Citrus Sinensis ID: 022491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR
Secondary Structure (PSIPRED)
ccccccEEEEEEccccHHHHHHHHHHccccEEEEEEcccccccccEEEEcccccccccccccEEEEEcccEEEEccEEEEEEEcccccccccccccccEEEEcccccccHHHHHHHHcccccEEEEccccccccEEEEEEccccccccccEEEcccccccccHHHHHHHccccccccccHHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEEcccccccEEEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHccccccccccEEEEEcEccEEEEccEEEEEEccccHHHccHHHHcccEEEEcccccccHHHHHHHHcccccEEEEccccccccEccccccHHHccccccEEEcccHHHHHHHHHHHHHHHHHcEEEEEEEEEEccccccEccccccccccHHHcEcccccEEEcccHHHHHHHHcHHHcccEEEEEEEccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccEEEEcccccHHHHccccc
Coil and Loop (DISEMBL)
MAGDKKIKIGINGFGRIGRLVARVAlqrddvelvavndpfistdyMTYMFKYdsvhgqwkhnelkvkdektllfgekpvavfgfrnpeeipwaktgAEYVVEstgvftdkdKAAAHLKGGAKKVVisapskdapmfvvgvnekeykpeldivsnascttnclaPLAKVIHDKFGIVEGLMTTVHSITatqktvdgpsmkdwrggraasfniipsstgaaKAVGKVlpalngkltgmsfrvptvdvSVVDLTVRLEKEATYEEIKNAIKEESEGKLKgilgyteedvvstdfvgdsr
Flexible Loop (DISEMBL)
magdkkikigingfgriGRLVARValqrddvelvavndpfISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKvvisapskdaPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSItatqktvdgpsmkDWRGGRAASFNIIPSSTGAAKAVGKVLPALNgkltgmsfrvptvdvsvVDLTVrlekeatyeeiknaikeesegklkgilgyteedvvstdfvgdsr
Low Complexity Region (SEG)
MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTdkdkaaahlkggakkVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR
Disordered region (IsUnstruct)
******IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDG**MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI*******LKGILGYTEEDVV*********
Disordered Region (DISOPRED)
****KKI**GINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG***
Disordered Region (DISEMBL)
MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR
Disordered Region (DISPRO)
****KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
P25858	338	Glyceraldehyde-3-phosphat	yes	no	0.993	0.869	0.925	1e-159
P34783	360	Glyceraldehyde-3-phosphat	N/A	no	0.983	0.808	0.917	1e-157
P04796	338	Glyceraldehyde-3-phosphat	N/A	no	0.989	0.866	0.914	1e-157
Q9FX54	338	Glyceraldehyde-3-phosphat	yes	no	0.989	0.866	0.911	1e-157
P26518	341	Glyceraldehyde-3-phosphat	N/A	no	0.993	0.862	0.914	1e-157
P25861	337	Glyceraldehyde-3-phosphat	N/A	no	0.979	0.860	0.934	1e-156
P34922	338	Glyceraldehyde-3-phosphat	N/A	no	0.983	0.860	0.903	1e-155
P34921	338	Glyceraldehyde-3-phosphat	N/A	no	0.979	0.857	0.910	1e-154
P26520	337	Glyceraldehyde-3-phosphat	N/A	no	0.983	0.863	0.903	1e-154
Q42671	337	Glyceraldehyde-3-phosphat	N/A	no	0.983	0.863	0.900	1e-154

>sp|P25858|G3PC1_ARATH Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic OS=Arabidopsis thaliana GN=GAPC1 PE=1 SV=2

 Score =  562 bits (1448), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/294 (92%), Positives = 285/294 (96%)

Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
            DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHN
Sbjct: 2   ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHN 61

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           ELK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFTDKDKAAAHLKGGAK
Sbjct: 62  ELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAK 121

Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           KVVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 122 KVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 181

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT
Sbjct: 182 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 241

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 242 VDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 295

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|P34783|G3P_ATRNU Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1

 Score =  554 bits (1428), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/291 (91%), Positives = 281/291 (96%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+KIGINGFGRIGRLVARV LQ DD ELVA+NDPFI+TDYMTYMFKYDSVHGQWKH+ELK
Sbjct: 3   KVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKDEKTLLFGE+PV VFG RNPEEIPW +TGA+YVVESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 63  VKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVI 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNE EYK EL+IVSNASCTTNCLAPLAKVI+DKFGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEHEYKSELNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV
Sbjct: 183 ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVRLEKEATYE+IK AIKEESEGK+KGILGYTE+DVVSTDFVGD+R
Sbjct: 243 SVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNR 293

Atriplex nummularia (taxid: 3553)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P04796|G3PC_SINAL Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2

 Score =  554 bits (1427), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/293 (91%), Positives = 283/293 (96%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           DKKIKIGINGFGRIGRLVARV LQR+DVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNE
Sbjct: 3   DKKIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNE 62

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           LKVKDEKTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 63  LKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPSKDAPMFVVGVNE EYK +L+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 123 VVISAPSKDAPMFVVGVNEHEYKSDLNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTV
Sbjct: 183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTV 242

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           DVSVVDLTVRLEK ATY+EIK AIKEES+GKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 243 DVSVVDLTVRLEKAATYDEIKKAIKEESQGKLKGILGYTEDDVVSTDFVGDNR 295

Sinapis alba (taxid: 3728)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9FX54|G3PC2_ARATH Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Arabidopsis thaliana GN=GAPC2 PE=1 SV=1

 Score =  553 bits (1426), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 267/293 (91%), Positives = 284/293 (96%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKH+E
Sbjct: 3   DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHE 62

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           LKVKD+KTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 63  LKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPTV
Sbjct: 183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTV 242

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           DVSVVDLTVRLEK ATY+EIK AIKEESEGK+KGILGYTE+DVVSTDFVGD+R
Sbjct: 243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNR 295

Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). Binds DNA in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P26518|G3PC_MAGLI Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1

 Score =  552 bits (1423), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/294 (91%), Positives = 280/294 (95%)

Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWKH+
Sbjct: 2   GGKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 61

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           ELKVKD KTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFTDKDKAAAHLKGGAK
Sbjct: 62  ELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAK 121

Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           KV+ISAPSKDAPMFVVGVNE EYK  +DIVSNASCTTNCLAPLAKVI+DKFGIVEGLMTT
Sbjct: 122 KVIISAPSKDAPMFVVGVNEHEYKSNIDIVSNASCTTNCLAPLAKVINDKFGIVEGLMTT 181

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPS KDWRGGRAA FNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPT
Sbjct: 182 VHSITATQKTVDGPSSKDWRGGRAAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 241

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDVSVVDLTVRLEK A+YEEIK  IK ESEGKLKGILGYTEEDVVSTDF+GD+R
Sbjct: 242 VDVSVVDLTVRLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDFIGDNR 295

Magnolia liliiflora (taxid: 3403)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P25861|G3PC_ANTMA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1

 Score =  552 bits (1423), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 271/290 (93%), Positives = 280/290 (96%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG WKH+ELKV
Sbjct: 4   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKV 63

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KDEKTLLFGEKPV VFG RNPEEIP A TGAEY+VESTGVFTDKDKAAAHLKGGAKKV+I
Sbjct: 64  KDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVII 123

Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           SAPSKDAPMFVVGVNEKEYK +L IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHSI
Sbjct: 124 SAPSKDAPMFVVGVNEKEYKSDLHIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSI 183

Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTVDVS
Sbjct: 184 TATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVS 243

Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VVDLTVRLEK+ATYE+IK AIKEESEGKLKGILGYTE+DVVSTDFVGDSR
Sbjct: 244 VVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSR 293

Antirrhinum majus (taxid: 4151)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P34922|G3PC_PEA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1

 Score =  546 bits (1407), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/291 (90%), Positives = 278/291 (95%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVAL+RDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWK++EL 
Sbjct: 4   KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELT 63

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKD  TLLFG+KPV VF  RNPEEIPWA TGA+ +VESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 64  VKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVI 123

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNE EYKPE DI+SNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 124 ISAPSKDAPMFVVGVNENEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 183

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV
Sbjct: 184 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 243

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDF+GD+R
Sbjct: 244 SVVDLTVRLEKAATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDTR 294

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P34921|G3PC_DIACA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1

 Score =  545 bits (1404), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/290 (91%), Positives = 280/290 (96%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IKIGINGFGRIGRLVARV LQR+D ELVAVNDPFI+T+YMTYMFKYDSVHGQWKH+++KV
Sbjct: 4   IKIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKV 63

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KDEKTLLFGEK V VFG RNPEEIPW  TGA+YVVESTGVFTDKDKAAAHLKGGAKKV+I
Sbjct: 64  KDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVII 123

Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           SAPSKDAPMFVVGVNE EYKPELDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHSI
Sbjct: 124 SAPSKDAPMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSI 183

Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPTVDVS
Sbjct: 184 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVS 243

Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VVDLTVR+EK ATYE++K AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 244 VVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 293

Dianthus caryophyllus (taxid: 3570)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P26520|G3PC_PETHY Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1

 Score =  545 bits (1404), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 263/291 (90%), Positives = 280/291 (96%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS +YMTYMFKYDSVHGQWKH+ELK
Sbjct: 3   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            KD+KTLLFGEKPV VFG RNPEEIPW + GA+YVVESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 63  AKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVI 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEKEYK +L +VSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKEYKSDLTVVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           +TATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDV
Sbjct: 183 MTATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVRLEKEATY+EIK AIKEESEGKLKGI G+TE+DVVSTDF+GD+R
Sbjct: 243 SVVDLTVRLEKEATYDEIKAAIKEESEGKLKGIPGHTEDDVVSTDFIGDNR 293

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q42671|G3PC_CRAPL Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1

 Score =  543 bits (1399), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/291 (90%), Positives = 280/291 (96%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+KIGINGFGRIGRLVARVAL RDDVELVAVNDPFI+ DYM YMFKYD+VHGQ+KH+ELK
Sbjct: 3   KVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKDEKTLLFG+KPVAVFG RNPEEIPWA+TGAEYVVESTGVFT+K+KAAAHLKGGAKKV+
Sbjct: 63  VKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVI 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEK Y P++D+VSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKTYTPDIDVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTVDV
Sbjct: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTV L KEA+Y+EIK AIKEESEGKLKGILGYTEEDVVS+DFVGDSR
Sbjct: 243 SVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSR 293

Craterostigma plantagineum (taxid: 4153)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
157042763	340	glyceraldehyde 3-phosphate dehydrogenase	1.0	0.870	0.935	1e-160
224110772	341	predicted protein [Populus trichocarpa]	1.0	0.868	0.922	1e-159
418731090	337	glyceraldehyde 3-phosphate dehydrogenase	0.983	0.863	0.938	1e-159
74419004	341	glyceraldehyde-3-phosphate dehydrogenase	1.0	0.868	0.922	1e-159
297828898	338	glyceraldehyde-3-phosphate dehydrogenase	0.993	0.869	0.928	1e-158
386870483	337	glyceraldehyde 3-phosphate dehydrogenase	0.983	0.863	0.934	1e-158
15229231	338	glyceraldehyde-3-phosphate dehydrogenase	0.993	0.869	0.925	1e-158
257815169	337	NAD-dependent glyceraldehyde 3-P dehydro	0.983	0.863	0.927	1e-158
166706	338	cystolic glyceraldehyde-3-phosphate dehy	0.993	0.869	0.925	1e-158
359806082	340	uncharacterized protein LOC100807342 [Gl	1.0	0.870	0.918	1e-158

>gi|157042763|gb|ABV02033.1| glyceraldehyde 3-phosphate dehydrogenase [Nicotiana langsdorffii x Nicotiana sanderae]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/296 (93%), Positives = 289/296 (97%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           MA DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK
Sbjct: 1   MASDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H+ELKVKDEKTLLFGEK V VFG RNPEEIPWA+ GA++VVESTGVFTDKDKAAAHLKGG
Sbjct: 61  HHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGG 120

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFVVGVNEKEYKPE DIVSNASCTTNCLAPLAKVI+D+FGIVEGLM
Sbjct: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPEYDIVSNASCTTNCLAPLAKVINDRFGIVEGLM 180

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVHS+TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRV
Sbjct: 181 TTVHSLTATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 240

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PTVDVSVVDLTVRLEKEA+Y+EIK AIKEESEGKLKGILG+TE+DVVSTDFVGDSR
Sbjct: 241 PTVDVSVVDLTVRLEKEASYDEIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSR 296

Source: Nicotiana langsdorffii x Nicotiana sanderae

Species: Nicotiana langsdorffii x Nicotiana sanderae

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110772|ref|XP_002315632.1| predicted protein [Populus trichocarpa] gi|118481113|gb|ABK92510.1| unknown [Populus trichocarpa] gi|118486257|gb|ABK94970.1| unknown [Populus trichocarpa] gi|222864672|gb|EEF01803.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/296 (92%), Positives = 287/296 (96%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           MA DKKIKIGINGFGRIGRLVARVALQRDDVELVA+NDPFI+TDYMTYMFKYD+VHG+WK
Sbjct: 1   MACDKKIKIGINGFGRIGRLVARVALQRDDVELVAINDPFITTDYMTYMFKYDTVHGRWK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H+ELKVKDEKTLLFGEK VAVFG RNPEEIPWA+ GAE+VVESTGVFTDKDKAAAHLKGG
Sbjct: 61  HSELKVKDEKTLLFGEKAVAVFGIRNPEEIPWAQAGAEFVVESTGVFTDKDKAAAHLKGG 120

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFVVGVNEK+Y P+LDIVSNASCTTNCLAPLAKVIHD+FGIVEGLM
Sbjct: 121 AKKVVISAPSKDAPMFVVGVNEKQYTPDLDIVSNASCTTNCLAPLAKVIHDRFGIVEGLM 180

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV
Sbjct: 181 TTVHAITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PTVDVSVVDLTVRLEK+ATYE IK+AIKEESE  LKGILGY EEDVVSTDF+GDSR
Sbjct: 241 PTVDVSVVDLTVRLEKKATYEAIKSAIKEESENNLKGILGYVEEDVVSTDFIGDSR 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731090|gb|AFX67011.1| glyceraldehyde 3-phosphate dehydrogenase [Solanum tuberosum]

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/291 (93%), Positives = 286/291 (98%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+KIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS DYMTYMFKYDSVHGQWKH+ELK
Sbjct: 3   KVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVDYMTYMFKYDSVHGQWKHHELK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKDEKTLLFGEK V VFGFRNPEEIPWA+TGA+Y+VESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 63  VKDEKTLLFGEKAVTVFGFRNPEEIPWAQTGADYIVESTGVFTDKDKAAAHLKGGAKKVI 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEKEYKPEL+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDV
Sbjct: 183 ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVRLEKEATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 243 SVVDLTVRLEKEATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 293

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|74419004|gb|ABA03227.1| glyceraldehyde-3-phosphate dehydrogenase [Populus maximowiczii x Populus nigra]

 Score =  565 bits (1456), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/296 (92%), Positives = 286/296 (96%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           MA DKKIKIGINGFGRIGRLVARVALQRDDVELVA+NDPFI+TDYMTYMFKYD+VHG+WK
Sbjct: 1   MACDKKIKIGINGFGRIGRLVARVALQRDDVELVAINDPFITTDYMTYMFKYDTVHGRWK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H ELKVKDEKTLLFGEK VAVFG RNPEEIPWA+ GAE+VVESTGVFTDKDKAAAHLKGG
Sbjct: 61  HGELKVKDEKTLLFGEKAVAVFGIRNPEEIPWAQAGAEFVVESTGVFTDKDKAAAHLKGG 120

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFVVGVNEK+Y P+LDIVSNASCTTNCLAPLAKVIHD+FGIVEGLM
Sbjct: 121 AKKVVISAPSKDAPMFVVGVNEKQYTPDLDIVSNASCTTNCLAPLAKVIHDRFGIVEGLM 180

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV
Sbjct: 181 TTVHAITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PTVDVSVVDLTVRLEK+ATYE IK+AIKEESE  LKGILGY EEDVVSTDF+GDSR
Sbjct: 241 PTVDVSVVDLTVRLEKKATYEAIKSAIKEESENNLKGILGYVEEDVVSTDFIGDSR 296

Source: Populus maximowiczii x Populus nigra

Species: Populus maximowiczii x Populus nigra

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828898|ref|XP_002882331.1| glyceraldehyde-3-phosphate dehydrogenase C subunit [Arabidopsis lyrata subsp. lyrata] gi|297328171|gb|EFH58590.1| glyceraldehyde-3-phosphate dehydrogenase C subunit [Arabidopsis lyrata subsp. lyrata]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 273/294 (92%), Positives = 285/294 (96%)

Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
            DKKIKIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHN
Sbjct: 2   ADKKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHN 61

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           ELK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFTDKDKAAAHLKGGAK
Sbjct: 62  ELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAK 121

Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           KVVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 122 KVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 181

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT
Sbjct: 182 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 241

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 242 VDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 295

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386870483|gb|AFJ42572.1| glyceraldehyde 3-phosphate dehydrogenase [Sesamum indicum]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/291 (93%), Positives = 283/291 (97%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQRDD++LVAVNDPFISTDYMTYMFKYDSVHG WKHNE+K
Sbjct: 3   KIKIGINGFGRIGRLVARVALQRDDIDLVAVNDPFISTDYMTYMFKYDSVHGHWKHNEVK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           +KDEKTLLFG+KPV VFGFRNPEEIPW + GAE+VVESTGVFTDKDKAAAHLKGGAKKVV
Sbjct: 63  MKDEKTLLFGDKPVKVFGFRNPEEIPWGEAGAEFVVESTGVFTDKDKAAAHLKGGAKKVV 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEKEYKP+L+IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKEYKPDLNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV
Sbjct: 183 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVRLEKEATYEEIK  IK+ESE  LKGILGYTE+DVVSTDFVGDSR
Sbjct: 243 SVVDLTVRLEKEATYEEIKAVIKQESENNLKGILGYTEDDVVSTDFVGDSR 293

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229231|ref|NP_187062.1| glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Arabidopsis thaliana] gi|20455492|sp|P25858.2|G3PC1_ARATH RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic gi|6721173|gb|AAF26801.1|AC016829_25 glyceraldehyde-3-phosphate dehydrogenase C subunit (GapC) [Arabidopsis thaliana] gi|15529286|gb|AAK97737.1| AT3g04120/T6K12_26 [Arabidopsis thaliana] gi|16974417|gb|AAL31134.1| AT3g04120/T6K12_26 [Arabidopsis thaliana] gi|22655270|gb|AAM98225.1| unknown protein [Arabidopsis thaliana] gi|110741920|dbj|BAE98901.1| glyceraldehyde-3-phosphate dehydrogenase C subunit [Arabidopsis thaliana] gi|332640518|gb|AEE74039.1| glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Arabidopsis thaliana]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/294 (92%), Positives = 285/294 (96%)

Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
            DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHN
Sbjct: 2   ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHN 61

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           ELK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFTDKDKAAAHLKGGAK
Sbjct: 62  ELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAK 121

Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           KVVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 122 KVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 181

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT
Sbjct: 182 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 241

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 242 VDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|257815169|gb|ACV69976.1| NAD-dependent glyceraldehyde 3-P dehydrogenase [Solanum chacoense]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/291 (92%), Positives = 285/291 (97%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI+ +YMTYMFKYDSVHGQWK+NEL+
Sbjct: 3   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITVEYMTYMFKYDSVHGQWKNNELR 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKDEKTLLFGEKPV VFG RNPEEIPWA+ GAEY+VESTGVFTDKDKAAAHLKGGAKKVV
Sbjct: 63  VKDEKTLLFGEKPVTVFGIRNPEEIPWAEAGAEYIVESTGVFTDKDKAAAHLKGGAKKVV 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEKEYKP+L++VSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKEYKPDLNVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPTVDV
Sbjct: 183 ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVRLEKEATY+EIK AIKEESEGKLKGILGYTE+DVVSTDF+GD+R
Sbjct: 243 SVVDLTVRLEKEATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNR 293

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166706|gb|AAA32794.1| cystolic glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] gi|166710|gb|AAA32796.1| glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana]

 Score =  562 bits (1448), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/294 (92%), Positives = 284/294 (96%)

Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
            DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHN
Sbjct: 2   ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHN 61

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           ELK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFTDKDKAAAHLKGGAK
Sbjct: 62  ELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAK 121

Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           KVVIS PSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 122 KVVISEPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 181

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT
Sbjct: 182 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 241

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDVSVVDLTVRLEK ATYEEIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 242 VDVSVVDLTVRLEKAATYEEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806082|ref|NP_001241184.1| uncharacterized protein LOC100807342 [Glycine max] gi|255638912|gb|ACU19758.1| unknown [Glycine max]

 Score =  561 bits (1447), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/296 (91%), Positives = 287/296 (96%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           MA DKKI+IGINGFGRIGRLVARVALQR+DVELVAVNDPFI+TDYMTYMFKYD+VHGQWK
Sbjct: 1   MASDKKIRIGINGFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMFKYDTVHGQWK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H ++K+KD KTLLFGEKPV VFGFRNPEEIPW + GA+YVVESTGVFTDKDKAAAHLKGG
Sbjct: 61  HFDVKLKDSKTLLFGEKPVTVFGFRNPEEIPWGEVGADYVVESTGVFTDKDKAAAHLKGG 120

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVI+D+FGIVEGLM
Sbjct: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLM 180

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV
Sbjct: 181 TTVHAITATQKTVDGPSNKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PTVDVSVVDLTVRLEK ATYE+IK AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 241 PTVDVSVVDLTVRLEKPATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2103085	338	GAPC1 "glyceraldehyde-3-phosph	0.989	0.866	0.877	2.3e-135
TAIR|locus:2010007	338	GAPC2 "glyceraldehyde-3-phosph	0.989	0.866	0.860	3e-133
TAIR|locus:2032810	420	GAPCP-2 "glyceraldehyde-3-phos	0.979	0.690	0.718	2.1e-107
TAIR|locus:2206435	422	GAPCP-1 "glyceraldehyde-3-phos	0.979	0.687	0.711	9.2e-107
CGD|CAL0005657	335	TDH3 [Candida albicans (taxid:	0.969	0.856	0.698	3.7e-103
UNIPROTKB|Q5ADM7	335	TDH3 "Glyceraldehyde-3-phospha	0.969	0.856	0.698	3.7e-103
SGD|S000003769	332	TDH2 "Glyceraldehyde-3-phospha	0.969	0.864	0.657	9.4e-98
POMBASE|SPBC32F12.11	336	tdh1 "glyceraldehyde-3-phospha	0.966	0.851	0.649	2.5e-97
UNIPROTKB|G4NCH2	336	MGG_01084 "Glyceraldehyde-3-ph	0.969	0.854	0.660	3.2e-97
ASPGD|ASPL0000009927	336	gpdA [Emericella nidulans (tax	0.969	0.854	0.647	8.4e-97

TAIR|locus:2103085 GAPC1 "glyceraldehyde-3-phosphate dehydrogenase C subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
 Identities = 257/293 (87%), Positives = 270/293 (92%)

Query:     4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
             DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNE
Sbjct:     3 DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNE 62

Query:    64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
             LK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFT               
Sbjct:    63 LKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKK 122

Query:   124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
             VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct:   123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query:   184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
             HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV
Sbjct:   183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 242

Query:   244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
             DVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct:   243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 295

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS;RCA;IDA;TAS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP;IDA

GO:0005740 "mitochondrial envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006094 "gluconeogenesis" evidence=RCA;TAS

GO:0042542 "response to hydrogen peroxide" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0008886 "glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity" evidence=IDA

GO:0010154 "fruit development" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=TAS

GO:0009408 "response to heat" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

TAIR|locus:2010007 GAPC2 "glyceraldehyde-3-phosphate dehydrogenase C2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1306 (464.8 bits), Expect = 3.0e-133, P = 3.0e-133
 Identities = 252/293 (86%), Positives = 269/293 (91%)

Query:     4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
             DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKH+E
Sbjct:     3 DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHE 62

Query:    64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
             LKVKD+KTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFT               
Sbjct:    63 LKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKK 122

Query:   124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
             VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct:   123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query:   184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
             HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPTV
Sbjct:   183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTV 242

Query:   244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
             DVSVVDLTVRLEK ATY+EIK AIKEESEGK+KGILGYTE+DVVSTDFVGD+R
Sbjct:   243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNR 295

GO:0005737 "cytoplasm" evidence=ISM

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS;RCA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006094 "gluconeogenesis" evidence=RCA;TAS

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0051049 "regulation of transport" evidence=RCA

TAIR|locus:2032810 GAPCP-2 "glyceraldehyde-3-phosphate dehydrogenase of plastid 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1062 (378.9 bits), Expect = 2.1e-107, P = 2.1e-107
 Identities = 209/291 (71%), Positives = 233/291 (80%)

Query:     6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             K K+GINGFGRIGRLV R+A  RDD+E+VAVNDPFI   YM YMFKYDS HG +K   + 
Sbjct:    84 KTKVGINGFGRIGRLVLRIATFRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNYK-GTIN 142

Query:    66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
             V D+ TL    K V V   R+P EIPWA  GAEYVVES+GVFT               V+
Sbjct:   143 VIDDSTLEINGKQVKVVSKRDPAEIPWADLGAEYVVESSGVFTTVGQASSHLKGGAKKVI 202

Query:   126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
             ISAPS DAPMFVVGVNEK Y P +DIVSNASCTTNCLAPLAKV+H++FGI+EGLMTTVH+
Sbjct:   203 ISAPSADAPMFVVGVNEKTYLPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 262

Query:   186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
              TATQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct:   263 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 322

Query:   246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
             SVVDLT RLEK+A+YE++K AIK  SEG L+GILGYTEEDVVS DF+GDSR
Sbjct:   323 SVVDLTCRLEKDASYEDVKAAIKFASEGPLRGILGYTEEDVVSNDFLGDSR 373

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009536 "plastid" evidence=ISS;IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2206435 GAPCP-1 "glyceraldehyde-3-phosphate dehydrogenase of plastid 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 207/291 (71%), Positives = 231/291 (79%)

Query:     6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             K K+GINGFGRIGRLV R+A  RDD+E+VAVNDPFI   YM YM KYDS HG +K   + 
Sbjct:    86 KTKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMLKYDSTHGNFK-GSIN 144

Query:    66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
             V D+ TL    K V V   R+P EIPWA  GA+YVVES+GVFT               V+
Sbjct:   145 VIDDSTLEINGKKVNVVSKRDPSEIPWADLGADYVVESSGVFTTLSKAASHLKGGAKKVI 204

Query:   126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
             ISAPS DAPMFVVGVNE  Y+P +DIVSNASCTTNCLAPLAKV+H++FGI+EGLMTTVH+
Sbjct:   205 ISAPSADAPMFVVGVNEHTYQPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 264

Query:   186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
              TATQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct:   265 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTSNV 324

Query:   246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
             SVVDLT RLEK A+YE++K AIK  SEG LKGILGYT+EDVVS DFVGDSR
Sbjct:   325 SVVDLTCRLEKGASYEDVKAAIKHASEGPLKGILGYTDEDVVSNDFVGDSR 375

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009536 "plastid" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0080144 "amino acid homeostasis" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

CGD|CAL0005657 TDH3 [Candida albicans (taxid:5476)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 202/289 (69%), Positives = 230/289 (79%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             IKIGINGFGRIGRLV RVAL R D+E+VAVNDPFI+ DY  YMFKYDS HG++K  E+  
Sbjct:     3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYK-GEVTA 61

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
               +  ++ G K + VF  R+P  IPW K+G +YV+ESTGVFT               V+I
Sbjct:    62 SGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKLEGAQKHIDAGAKKVII 120

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             +APS DAPMFVVGVNE +Y P+L I+SNASCTTNCLAPLAKV++D FGI EGLMTTVHSI
Sbjct:   121 TAPSADAPMFVVGVNEDKYTPDLKIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSI 180

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKV+P LNGKLTGMS RVPT DVS
Sbjct:   181 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVPTTDVS 240

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
             VVDLTVRL+K A+YEEI  AIK+ SEG LKG+LGYTE+ VVSTDF+G S
Sbjct:   241 VVDLTVRLKKAASYEEIAQAIKKASEGPLKGVLGYTEDAVVSTDFLGSS 289

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0030445 "yeast-form cell wall" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0006096 "glycolysis" evidence=TAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051701 "interaction with host" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0043236 "laminin binding" evidence=IMP;IDA

GO:0050840 "extracellular matrix binding" evidence=IMP;IDA

GO:0044406 "adhesion to host" evidence=IMP

GO:0007160 "cell-matrix adhesion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0001968 "fibronectin binding" evidence=IDA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q5ADM7 TDH3 "Glyceraldehyde-3-phosphate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 202/289 (69%), Positives = 230/289 (79%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             IKIGINGFGRIGRLV RVAL R D+E+VAVNDPFI+ DY  YMFKYDS HG++K  E+  
Sbjct:     3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYK-GEVTA 61

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
               +  ++ G K + VF  R+P  IPW K+G +YV+ESTGVFT               V+I
Sbjct:    62 SGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKLEGAQKHIDAGAKKVII 120

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             +APS DAPMFVVGVNE +Y P+L I+SNASCTTNCLAPLAKV++D FGI EGLMTTVHSI
Sbjct:   121 TAPSADAPMFVVGVNEDKYTPDLKIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSI 180

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKV+P LNGKLTGMS RVPT DVS
Sbjct:   181 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVPTTDVS 240

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
             VVDLTVRL+K A+YEEI  AIK+ SEG LKG+LGYTE+ VVSTDF+G S
Sbjct:   241 VVDLTVRLKKAASYEEIAQAIKKASEGPLKGVLGYTEDAVVSTDFLGSS 289

GO:0001968 "fibronectin binding" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006096 "glycolysis" evidence=TAS

GO:0007160 "cell-matrix adhesion" evidence=IDA

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0030445 "yeast-form cell wall" evidence=IDA

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0043236 "laminin binding" evidence=IDA

GO:0044406 "adhesion to host" evidence=IMP

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0050840 "extracellular matrix binding" evidence=IDA

GO:0051701 "interaction with host" evidence=IPI

SGD|S000003769 TDH2 "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 190/289 (65%), Positives = 225/289 (77%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             +++ INGFGRIGRLV R+ALQR +VE+VA+NDPFIS DY  YMFKYDS HG++   E+  
Sbjct:     2 VRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYA-GEVSH 60

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
              D+  ++ G K +A F  R+P  +PWA    +  ++STGVF                VVI
Sbjct:    61 DDKHIIVDGHK-IATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             +APS  APMFV+GVNE++Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct:   120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSM 179

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct:   180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
             VVDLTV+L KE TY+EIK  +K  +EGKLKG+LGYTE+ VVS+DF+GDS
Sbjct:   240 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDS 288

GO:0006096 "glycolysis" evidence=IEA;IEP

GO:0006094 "gluconeogenesis" evidence=IEP

GO:0050661 "NADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IEA;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

POMBASE|SPBC32F12.11 tdh1 "glyceraldehyde-3-phosphate dehydrogenase Tdh1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 187/288 (64%), Positives = 225/288 (78%)

Query:     8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
             K+GINGFGRIGR+V R AL    +++VA+NDPFI  +YM YMFKYDS HG++    +++K
Sbjct:     5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFD-GSVEIK 63

Query:    68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
             D K ++ G   + V   R+P +I W+ +GA+YV+ESTGVFT               V+IS
Sbjct:    64 DGKLVIDGNA-IDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIIS 122

Query:   128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
             APSKDAPM+VVGVNE+++ P   ++SNASCTTNCLAPLAKVI+D FGI EGLMTTVH+ T
Sbjct:   123 APSKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATT 182

Query:   188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
             ATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKV+PALNGKLTGM+FRVPT DVSV
Sbjct:   183 ATQKTVDGPSKKDWRGGRGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSV 242

Query:   248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
             VDLTV+L K   YE+IK AIK  SEG +KG+LGYTE+ VVSTDF GD+
Sbjct:   243 VDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDN 290

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006094 "gluconeogenesis" evidence=IC

GO:0006096 "glycolysis" evidence=IC

GO:0009277 "fungal-type cell wall" evidence=ISO

GO:0031098 "stress-activated protein kinase signaling cascade" evidence=IMP

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0070297 "regulation of phosphorelay signal transduction system" evidence=IPI

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

GO:0070302 "regulation of stress-activated protein kinase signaling cascade" evidence=IMP

UNIPROTKB|G4NCH2 MGG_01084 "Glyceraldehyde-3-phosphate dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 191/289 (66%), Positives = 225/289 (77%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             +K GINGFGRIGR+V R A++  D E+VAVNDPFI   Y  YM +YDS HG++K   ++V
Sbjct:     2 VKCGINGFGRIGRIVFRNAIEHPDCEIVAVNDPFIEPKYAKYMLEYDSTHGRFK-GTVEV 60

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                  ++ G+K V  +  R+P  IPW++TGAEYVVESTGVFT               V+I
Sbjct:    61 SGSDLVVNGKK-VKFYTERDPANIPWSETGAEYVVESTGVFTTTDKASAHLKGGAKKVII 119

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             SAPS DAPM+V+GVNEK Y     ++SNASCTTNCLAPLAKVI+DKFGIVEGLMTTVHS 
Sbjct:   120 SAPSADAPMYVMGVNEKSYDGSASVISNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSY 179

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+PALNGKLTGMS RVPT +VS
Sbjct:   180 TATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPALNGKLTGMSMRVPTANVS 239

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
             VVDLT RLEK A+YEEIK AIKE ++G LKGIL YTE+DVVS+D +G++
Sbjct:   240 VVDLTCRLEKGASYEEIKAAIKEAADGPLKGILEYTEDDVVSSDMIGNN 288

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

ASPGD|ASPL0000009927 gpdA [Emericella nidulans (taxid:162425)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 187/289 (64%), Positives = 225/289 (77%)

Query:     8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
             K+GINGFGRIGR+V R A++   V++VAVNDPFI T Y  YM KYDS HGQ+K   ++  
Sbjct:     4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFK-GTIETY 62

Query:    68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
             DE  ++ G+K +     R+P  IPW + GAEY+VESTGVFT               VVIS
Sbjct:    63 DEGLIVNGKK-IRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVIS 121

Query:   128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
             APS DAPMFV+GVN + YK ++ ++SNASCTTNCLAPLAKVI+D FGI+EGLMTTVHS T
Sbjct:   122 APSADAPMFVMGVNNETYKKDIQVLSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHSYT 181

Query:   188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
             ATQK VDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P+LNGKLTGM+ RVPT +VSV
Sbjct:   182 ATQKVVDGPSAKDWRGGRTAATNIIPSSTGAAKAVGKVIPSLNGKLTGMAMRVPTSNVSV 241

Query:   248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
             VDLTVR EK  TY++IK+A+K+ SE +LKGILGYTE+D+VSTD  GD+R
Sbjct:   242 VDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTR 290

GO:0005622 "intracellular" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISA;RCA;IMP

GO:0006096 "glycolysis" evidence=ISA;RCA

GO:0006094 "gluconeogenesis" evidence=ISA;RCA

GO:0071470 "cellular response to osmotic stress" evidence=IEP

GO:0035690 "cellular response to drug" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0009277 "fungal-type cell wall" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UR38	G3P_LENED	1, ., 2, ., 1, ., 1, 2	0.6931	0.9729	0.8545	N/A	no
Q9P8C0	G3P_PHANO	1, ., 2, ., 1, ., 1, 2	0.6931	0.9729	0.8545	N/A	no
P34923	G3PC_PHYPA	1, ., 2, ., 1, ., 1, 2	0.7939	0.9966	0.8625	N/A	no
P08439	G3P_ZYGRO	1, ., 2, ., 1, ., 1, 2	0.6689	0.9729	0.8648	yes	no
Q7FAH2	G3PC2_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.9037	0.9831	0.8635	yes	no
P54270	G3PC_GRAGA	1, ., 2, ., 1, ., 1, 2	0.6842	0.9560	0.8447	N/A	no
Q42671	G3PC_CRAPL	1, ., 2, ., 1, ., 1, 2	0.9003	0.9831	0.8635	N/A	no
P08477	G3PC2_HORVU	1, ., 2, ., 1, ., 1, 2	0.8773	0.8817	0.8557	N/A	no
P0CN74	G3P_CRYNJ	1, ., 2, ., 1, ., 1, 2	0.7275	0.9695	0.8466	yes	no
P0CN75	G3P_CRYNB	1, ., 2, ., 1, ., 1, 2	0.7275	0.9695	0.8466	N/A	no
P29497	G3P_COCHE	1, ., 2, ., 1, ., 1, 2	0.6931	0.9729	0.8545	N/A	no
P04796	G3PC_SINAL	1, ., 2, ., 1, ., 1, 2	0.9146	0.9898	0.8668	N/A	no
A2YQT7	G3PC_ORYSI	1, ., 2, ., 1, ., 1, 2	0.8659	0.9831	0.8635	N/A	no
P53430	G3P_MONPU	1, ., 2, ., 1, ., 1, 2	0.6933	0.9628	0.8456	N/A	no
P09317	G3P_USTMA	1, ., 2, ., 1, ., 1, 2	0.6872	0.9763	0.8575	N/A	no
Q00640	G3P_ERYGR	1, ., 2, ., 1, ., 1, 2	0.6862	0.9729	0.8520	N/A	no
P26518	G3PC_MAGLI	1, ., 2, ., 1, ., 1, 2	0.9149	0.9932	0.8621	N/A	no
P26519	G3PC_PETCR	1, ., 2, ., 1, ., 1, 2	0.8831	0.9831	0.8660	N/A	no
P26517	G3PC1_HORVU	1, ., 2, ., 1, ., 1, 2	0.8625	0.9831	0.8635	N/A	no
Q43247	G3PC3_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8969	0.9831	0.8635	N/A	no
P34924	G3PC_PINSY	1, ., 2, ., 1, ., 1, 2	0.8614	1.0	0.8705	N/A	no
Q8X1X3	G3P_PARBA	1, ., 2, ., 1, ., 1, 2	0.6862	0.9763	0.8550	N/A	no
Q6K5G8	G3PC3_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.8934	0.9831	0.8635	no	no
P34922	G3PC_PEA	1, ., 2, ., 1, ., 1, 2	0.9037	0.9831	0.8609	N/A	no
Q9FX54	G3PC2_ARATH	1, ., 2, ., 1, ., 1, 2	0.9112	0.9898	0.8668	yes	no
P34921	G3PC_DIACA	1, ., 2, ., 1, ., 1, 2	0.9103	0.9797	0.8579	N/A	no
Q92263	G3P_PICPA	1, ., 2, ., 1, ., 1, 2	0.7034	0.9729	0.8648	yes	no
P32636	G3P2_AGABI	1, ., 2, ., 1, ., 1, 2	0.6989	0.9695	0.8491	N/A	no
Q8NK47	G3P_RHIMI	1, ., 2, ., 1, ., 1, 2	0.7034	0.9695	0.8541	N/A	no
Q0J8A4	G3PC1_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.8659	0.9831	0.8635	no	no
P25861	G3PC_ANTMA	1, ., 2, ., 1, ., 1, 2	0.9344	0.9797	0.8605	N/A	no
P09094	G3PC_TOBAC	1, ., 2, ., 1, ., 1, 2	0.9290	0.9527	0.8650	N/A	no
Q8TFJ2	G3P_OMPOL	1, ., 2, ., 1, ., 1, 2	0.7206	0.9729	0.8545	N/A	no
Q09054	G3PC2_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8694	0.9831	0.8635	N/A	no
Q92211	G3P_CANAW	1, ., 2, ., 1, ., 1, 2	0.7197	0.9695	0.8567	N/A	no
Q6CCU7	G3P_YARLI	1, ., 2, ., 1, ., 1, 2	0.7216	0.9729	0.8520	yes	no
P56649	G3P_PANVR	1, ., 2, ., 1, ., 1, 2	0.6920	0.9662	0.8588	N/A	no
Q39769	G3PC_GINBI	1, ., 2, ., 1, ., 1, 2	0.875	1.0	0.8705	N/A	no
P34783	G3P_ATRNU	1, ., 2, ., 1, ., 1, 2	0.9175	0.9831	0.8083	N/A	no
Q41595	G3PC_TAXBA	1, ., 2, ., 1, ., 1, 2	0.8817	1.0	0.8705	N/A	no
P26521	G3PC_RANAC	1, ., 2, ., 1, ., 1, 2	0.8900	0.9831	0.8609	N/A	no
P26520	G3PC_PETHY	1, ., 2, ., 1, ., 1, 2	0.9037	0.9831	0.8635	N/A	no
P28844	G3P_COCLU	1, ., 2, ., 1, ., 1, 2	0.6896	0.9729	0.8545	N/A	no
Q6BMK0	G3P_DEBHA	1, ., 2, ., 1, ., 1, 2	0.7351	0.9628	0.8507	yes	no
Q9Y796	G3P_CRYCU	1, ., 2, ., 1, ., 1, 2	0.7256	0.9662	0.8486	N/A	no
P17878	G3PC_MESCR	1, ., 2, ., 1, ., 1, 2	0.8797	0.9831	0.8635	N/A	no
P00357	G3P_HOMAM	1, ., 2, ., 1, ., 1, 2	0.6989	0.9662	0.8588	N/A	no
Q96UF2	G3P2_MUCCL	1, ., 2, ., 1, ., 1, 2	0.7024	0.9695	0.8491	N/A	no
P08735	G3PC1_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8625	0.9831	0.8635	N/A	no
P25858	G3PC1_ARATH	1, ., 2, ., 1, ., 1, 2	0.9251	0.9932	0.8698	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.2.1.12	0.994
4th Layer	1.2.1.59	LOW CONFIDENCE prediction!
3rd Layer	1.2.1	0.998

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
PLN02358	338	PLN02358, PLN02358, glyceraldehyde-3-phosphate deh	0.0
PLN02272	421	PLN02272, PLN02272, glyceraldehyde-3-phosphate deh	0.0
PTZ00023	337	PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh	1e-153
TIGR01534	326	TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh	1e-153
COG0057	335	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog	1e-152
PRK15425	331	PRK15425, gapA, glyceraldehyde-3-phosphate dehydro	1e-122
PTZ00434	361	PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-pho	1e-117
PRK07729	343	PRK07729, PRK07729, glyceraldehyde-3-phosphate deh	1e-110
PRK07403	337	PRK07403, PRK07403, glyceraldehyde-3-phosphate deh	3e-97
PLN03096	395	PLN03096, PLN03096, glyceraldehyde-3-phosphate deh	6e-95
PLN02237	442	PLN02237, PLN02237, glyceraldehyde-3-phosphate deh	3e-94
PRK08955	334	PRK08955, PRK08955, glyceraldehyde-3-phosphate deh	1e-86
pfam02800	157	pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate deh	2e-79
PRK13535	336	PRK13535, PRK13535, erythrose 4-phosphate dehydrog	5e-78
pfam00044	148	pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh	9e-73
TIGR01532	325	TIGR01532, E4PD_g-proteo, erythrose-4-phosphate de	8e-72
smart00846	149	smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de	3e-71
PRK08289	477	PRK08289, PRK08289, glyceraldehyde-3-phosphate deh	1e-69
PTZ00353	342	PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-ph	8e-56
COG0136	334	COG0136, Asd, Aspartate-semialdehyde dehydrogenase	2e-08
TIGR01296	338	TIGR01296, asd_B, aspartate-semialdehyde dehydroge	2e-04
PRK04207	341	PRK04207, PRK04207, glyceraldehyde-3-phosphate deh	2e-04
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	3e-04
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	3e-04
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	5e-04

>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase

 Score =  539 bits (1389), Expect = 0.0
 Identities = 268/294 (91%), Positives = 284/294 (96%)

Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
            DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKH+
Sbjct: 2   ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHH 61

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           ELKVKD+KTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFTDKDKAAAHLKGGAK
Sbjct: 62  ELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAK 121

Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           KVVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 122 KVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 181

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPT
Sbjct: 182 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPT 241

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+R
Sbjct: 242 VDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNR 295

Length = 338

>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase

 Score =  522 bits (1345), Expect = 0.0
 Identities = 221/293 (75%), Positives = 245/293 (83%), Gaps = 1/293 (0%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
             K KIGINGFGRIGRLV R+A  RDD+E+VAVNDPFI   YM YMFKYDS HG +K   
Sbjct: 83  SGKTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GT 141

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           + V D+ TL    K + V   R+P EIPW   GAEYVVES+GVFT  +KA+AHLKGGAKK
Sbjct: 142 INVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKK 201

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPS DAPMFVVGVNEK YKP ++IVSNASCTTNCLAPLAKV+H++FGI+EGLMTTV
Sbjct: 202 VVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTV 261

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           H+ TATQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT 
Sbjct: 262 HATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 321

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           +VSVVDLT RLEK A+YE++K AIK  SEG LKGILGYT+EDVVS DFVGDSR
Sbjct: 322 NVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSR 374

Length = 421

>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score =  432 bits (1113), Expect = e-153
 Identities = 194/293 (66%), Positives = 229/293 (78%), Gaps = 5/293 (1%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGRLV R AL+R+DVE+VA+NDPF++ DYM Y+ KYDSVHG     E+ V
Sbjct: 3   VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPA-EVSV 61

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D   L+ G K V VF  ++P  IPW K G + V ESTGVF  K+KA AHLKGGAKKV++
Sbjct: 62  TDG-FLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP KD  P++V+GVN  +Y     IVSNASCTTNCLAPLAKV++DKFGIVEGLMTTVH+
Sbjct: 121 SAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHA 180

Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
            TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+P LNGKLTGM+FRVP  
Sbjct: 181 STANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVP 240

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           DVSVVDLT +L K A YEEI  A+K+ +EG LKGILGYT+++VVS+DFV D R
Sbjct: 241 DVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKR 293

Length = 337

>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I

 Score =  431 bits (1110), Expect = e-153
 Identities = 167/292 (57%), Positives = 215/292 (73%), Gaps = 6/292 (2%)

Query: 8   KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+GINGFGRIGRLV R  L++   D+E+VA+ND     +Y+ Y+ KYDSVHG+++  E+ 
Sbjct: 1   KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEG-EVT 58

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             ++  ++ G++ ++VF  R+P ++PW   G + V+E TG F DK+K   HL+ GAKKV+
Sbjct: 59  ADEDGLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVL 118

Query: 126 ISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           ISAPSK D    V GVN  EY P   IVSNASCTTNCLAPLAKV+ + FGIV GLMTTVH
Sbjct: 119 ISAPSKGDVKTIVYGVNHDEYDPSERIVSNASCTTNCLAPLAKVLDEAFGIVSGLMTTVH 178

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q  VDGP  KD R  RAA+ NIIP+STGAAKA+GKVLP L GKLTGM+ RVPT +
Sbjct: 179 SYTNDQNLVDGP-HKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPN 237

Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VS+VDL V LEK+ T EE+  A+KE +EG+LKG+LGYTE+++VS+DF+G   
Sbjct: 238 VSLVDLVVNLEKDVTVEEVNAALKEAAEGELKGVLGYTEDELVSSDFIGSPY 289

This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two PFAM models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 326

>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

 Score =  428 bits (1104), Expect = e-152
 Identities = 176/294 (59%), Positives = 210/294 (71%), Gaps = 7/294 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
            IK+ INGFGRIGRLVAR AL+RD D+E+VA+ND     DY+ ++ KYDSVHG++   E+
Sbjct: 1   MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDG-EV 58

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL-KGGAKK 123
           +V  +  L+   K + V   R+P  +PWA  G + VVE TG FT ++KA  HL  GGAKK
Sbjct: 59  EV-KDDALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKK 117

Query: 124 VVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+ISAP KD     V GVN   Y     IVSNASCTTNCLAP+AKV++D FGI +GLMTT
Sbjct: 118 VLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTT 177

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VH+ T  QK VDGP  KD R  RAA+ NIIP+STGAAKAVG VLP L GKLTGM+ RVPT
Sbjct: 178 VHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            +VSVVDLTV LEKE T EEI  A+K  SE  LKGILGYTE+ +VS+DF GD  
Sbjct: 237 PNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPH 290

Length = 335

>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score =  352 bits (903), Expect = e-122
 Identities = 187/289 (64%), Positives = 227/289 (78%), Gaps = 5/289 (1%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 60

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F   + A  H+  GAKKVV+
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGE 287

Length = 331

>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

 Score =  340 bits (872), Expect = e-117
 Identities = 169/304 (55%), Positives = 216/304 (71%), Gaps = 14/304 (4%)

Query: 7   IKIGINGFGRIGRLVARVALQRD----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           IK+GINGFGRIGR+V +    +     ++++VAV D   + +Y  Y  KYD+VHG+ K+ 
Sbjct: 4   IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYT 63

Query: 63  ELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA 115
               K       D+  ++ G +   V   RNP ++PW K G +YV+ESTG+FTDK  A  
Sbjct: 64  VETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEG 123

Query: 116 HLKGGAKKVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
           HLKGGAKKVVISAP S  A   V+GVN+ EY P E  +VSNASCTTNCLAP+  V+  + 
Sbjct: 124 HLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEG 183

Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FGI  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 184 FGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 243

Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGMSFRVPT DVSVVDLT R  ++ + +EI  AIK  S+  +KGILG+T++++VS DF+
Sbjct: 244 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFI 303

Query: 293 GDSR 296
            D+R
Sbjct: 304 NDNR 307

Length = 361

>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated

 Score =  322 bits (826), Expect = e-110
 Identities = 142/294 (48%), Positives = 200/294 (68%), Gaps = 8/294 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K K+ INGFGRIGR+V R A++    E+VA+N  +  ++ + ++ KYD+VHG++   +  
Sbjct: 2   KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKF---DGT 57

Query: 66  VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
           V+  E  LL   K + +   R+P+E+PW   G + V+E+TG F  K+KA  H++ GAKKV
Sbjct: 58  VEAFEDHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKV 117

Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           +++AP K+  +  VVGVNE +   E   I+SNASCTTNCLAP+ KV+ ++FGI  GLMTT
Sbjct: 118 ILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTT 177

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VH+ T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GM+ RVPT
Sbjct: 178 VHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPT 236

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            +VS+VDL V ++++ T EEI  A K  + G LKGIL ++EE +VS DF  ++ 
Sbjct: 237 PNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTH 290

Length = 343

>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score =  289 bits (741), Expect = 3e-97
 Identities = 146/294 (49%), Positives = 199/294 (67%), Gaps = 13/294 (4%)

Query: 7   IKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
           I++ INGFGRIGR   R  L R++  +ELVA+ND   ++D  T  ++ KYDS+ G  K N
Sbjct: 2   IRVAINGFGRIGRNFLRCWLGRENSQLELVAIND---TSDPRTNAHLLKYDSMLG--KLN 56

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
                DE ++    K +     RNP  +PW + G + ++ESTGVF  K+ A+ H++ GAK
Sbjct: 57  ADISADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAK 116

Query: 123 KVVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
           KV+I+AP K  D   +VVGVN  EY  E  +I+SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 117 KVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGT 176

Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  V+P L GKL G++ R
Sbjct: 177 MTTTHSYTGDQRILDA-SHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALR 235

Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           VPT +VSVVDL V++EK    E++   +K+ SEG LKGIL Y++  +VS+D+ G
Sbjct: 236 VPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRG 289

Length = 337

>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score =  285 bits (731), Expect = 6e-95
 Identities = 140/291 (48%), Positives = 190/291 (65%), Gaps = 6/291 (2%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
           + KIK+ INGFGRIGR   R    R D  +++VA+ND        +++ KYDS  G +  
Sbjct: 58  EAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFD- 115

Query: 62  NELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121
            ++K   +  +    K + V   RNP  +PW + G + V+E TGVF D++ A  H++ GA
Sbjct: 116 ADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGA 175

Query: 122 KKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           KKV+I+AP K D P +VVGVN  +YK    I+SNASCTTNCLAP  KV+  KFGI++G M
Sbjct: 176 KKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTM 235

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G++ RV
Sbjct: 236 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRV 294

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           PT +VSVVDL V++EK+   EE+  A ++ +E +LKGIL   +E +VS DF
Sbjct: 295 PTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDF 345

Length = 395

>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B

 Score =  285 bits (730), Expect = 3e-94
 Identities = 144/292 (49%), Positives = 199/292 (68%), Gaps = 9/292 (3%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V VND        +++ KYDS+ G +K  +
Sbjct: 75  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSMLGTFK-AD 132

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           +K+ D++T+    KP+ V   R+P ++PWA+ G + V+E TGVF D   A  H++ GAKK
Sbjct: 133 VKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 192

Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+I+AP+K  D P +VVGVNE +Y  E+ +IVSNASCTTNCLAP  KV+ ++FGIV+G M
Sbjct: 193 VIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTM 252

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G++ RV
Sbjct: 253 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311

Query: 241 PTVDVSVVDLTVRLEKEA-TYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           PT +VSVVDL V +EK+  T E++  A ++ ++G LKGIL   +  +VS DF
Sbjct: 312 PTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDF 363

Length = 442

>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated

 Score =  262 bits (671), Expect = 1e-86
 Identities = 121/294 (41%), Positives = 178/294 (60%), Gaps = 8/294 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
            IK+GINGFGRIGRL  R A    ++E V +NDP      + ++ ++DSVHG+W H    
Sbjct: 2   TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHE--V 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             +   ++   K +     +   +  W  +G + V+E++GV   K    A+L  G K+VV
Sbjct: 60  TAEGDAIVINGKRIRTTQNKAIADTDW--SGCDVVIEASGVMKTKALLQAYLDQGVKRVV 117

Query: 126 ISAPSKDAPMF--VVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           ++AP K+  +   V+GVN+  + P +  IV+ ASCTTNCLAP+ KVIH+K GI  G MTT
Sbjct: 118 VTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMTT 177

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           +H +T TQ  +D P  KD R  RA   ++IP++TG+A A+ ++ P L GKL G + RVP 
Sbjct: 178 IHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            + S+ D    +E++ T EE+   +KE +EG+LKGILGY E  +VS D+  D R
Sbjct: 237 ANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPR 290

Length = 334

>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

 Score =  237 bits (607), Expect = 2e-79
 Identities = 97/135 (71%), Positives = 110/135 (81%), Gaps = 1/135 (0%)

Query: 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 221
           LAPLAKV++D FGI +GLMTTVH+ TA QK VD PS KD R GRAA+ NIIP+STGAAKA
Sbjct: 1   LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVD-PSHKDLRRGRAAAPNIIPTSTGAAKA 59

Query: 222 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 281
           VG VLP L GKLTGM+FRVPT +VSVVDLTV LEK  T EE+  A+KE +EG LKGILGY
Sbjct: 60  VGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKEAAEGALKGILGY 119

Query: 282 TEEDVVSTDFVGDSR 296
           TEE +VS+DFVGD  
Sbjct: 120 TEEPLVSSDFVGDPH 134

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Length = 157

>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional

 Score =  240 bits (614), Expect = 5e-78
 Identities = 112/298 (37%), Positives = 174/298 (58%), Gaps = 15/298 (5%)

Query: 7   IKIGINGFGRIGRLVARVAL----QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           I++ INGFGRIGR V R AL    +R ++ +VA+N+     + M ++ KYD+ HG++   
Sbjct: 2   IRVAINGFGRIGRNVLR-ALYESGRRAEITVVAINE-LADAEGMAHLLKYDTSHGRFAW- 58

Query: 63  ELKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121
              V+ E+  LF G+  + +   R+   +PW + G + V++ TGV+  ++   AH+  GA
Sbjct: 59  --DVRQERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGA 116

Query: 122 KKVVISAPSK---DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEG 178
           KKV+ S P     DA + V GVN  + + E  IVSNASCTTNC+ P+ K++ D FGI  G
Sbjct: 117 KKVLFSHPGSNDLDATV-VYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESG 175

Query: 179 LMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSF 238
            +TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + ++ P  N +   +S 
Sbjct: 176 TVTTIHSAMNDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISV 234

Query: 239 RVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           RVPT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D  
Sbjct: 235 RVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPH 292

Length = 336

>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score =  220 bits (562), Expect = 9e-73
 Identities = 86/151 (56%), Positives = 111/151 (73%), Gaps = 4/151 (2%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGRLV R AL +DD+E+VA+ND     + + Y+ KYDSVHG++   E++V
Sbjct: 1   IKVGINGFGRIGRLVLRAALAQDDLEVVAINDLT-DPETLAYLLKYDSVHGRFDG-EVEV 58

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            ++  L+   K + VF  R+P E+PW + G + VVESTGVFT  +KA AHLK GAKKV+I
Sbjct: 59  DEDG-LIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVII 117

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNAS 156
           SAP+KD  P FV GVN ++Y PE DIVSNAS
Sbjct: 118 SAPAKDDDPTFVYGVNHEDYDPEDDIVSNAS 148

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 148

>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase

 Score =  224 bits (571), Expect = 8e-72
 Identities = 108/292 (36%), Positives = 172/292 (58%), Gaps = 9/292 (3%)

Query: 8   KIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
           ++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++   E+
Sbjct: 1   RVAINGFGRIGRNVLRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA-WEV 58

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
           +  D   L  G+  + V   R+ + +PW + G + V++ TGV+  ++   AH+  GAKKV
Sbjct: 59  RQ-DRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKV 117

Query: 125 VISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           + S P + D    +V GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +TT
Sbjct: 118 LFSHPGASDLDATIVYGVNQDQLRAEHRIVSNASCTTNCIVPVIKLLDDAYGIESGTITT 177

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           +HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RVPT
Sbjct: 178 IHSAMNDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGIERFFPQFNDRFEAIAVRVPT 236

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           V+V+ +DL+V ++K     E+   +++ ++G L+GI+ YTE  +VS DF  D
Sbjct: 237 VNVTAIDLSVTVKKPVKANEVNLLLQKAAQGALRGIVDYTELPLVSVDFNHD 288

This model represents the small clade of dehydrogenases in gamma-proteobacteria which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose. This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 325

>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score =  216 bits (552), Expect = 3e-71
 Identities = 85/152 (55%), Positives = 109/152 (71%), Gaps = 4/152 (2%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGRLV R AL+R DVE+VA+ND     +Y+ Y+ KYDSVHG++    ++V
Sbjct: 1   IKVGINGFGRIGRLVLRAALERPDVEVVAINDL-TDPEYLAYLLKYDSVHGRFPG-TVEV 58

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           + +  L+   K + VF  R+P  +PW + G + VVE TG FT ++KA+AHLK GAKKV+I
Sbjct: 59  EGD-GLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVII 117

Query: 127 SAPSKDA-PMFVVGVNEKEYKPELDIVSNASC 157
           SAPSKDA P FV GVN  EY  E  I+SNASC
Sbjct: 118 SAPSKDADPTFVYGVNHDEYDGEDHIISNASC 149

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 149

>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score =  222 bits (569), Expect = 1e-69
 Identities = 113/301 (37%), Positives = 168/301 (55%), Gaps = 22/301 (7%)

Query: 13  GFGRIGRLVARVALQR----DDVELVAV-------NDPFISTDYMTYMFKYDSVHGQWKH 61
           GFGRIGRL+AR+ +++    + + L A+        D     +    + + DSVHG +  
Sbjct: 134 GFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGD----LEKRASLLRRDSVHGPFNG 189

Query: 62  NELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAE--YVVESTGVFTDKDKAAAHLKG 119
                ++   ++     + V    +PEE+ +   G     VV++TG + D++  + HLK 
Sbjct: 190 TITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKS 249

Query: 120 -GAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVE 177
            G  KV+++AP K D    V GVN  +   E  IVS ASCTTN + P+ K ++DK+GIV 
Sbjct: 250 KGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVN 309

Query: 178 GLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMS 237
           G + TVHS T  Q  +D     D R GR+A  N++ + TGAAKAV K LP L GKLTG +
Sbjct: 310 GHVETVHSYTNDQNLIDNYHKGD-RRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNA 368

Query: 238 FRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES-EGKLKGILGYTEE-DVVSTDFVGDS 295
            RVPT +VS+  L + LEKE + EE+   +++ S    L+  + YT+  +VVS+DFVG  
Sbjct: 369 IRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSR 428

Query: 296 R 296
            
Sbjct: 429 H 429

Length = 477

>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score =  183 bits (466), Expect = 8e-56
 Identities = 86/291 (29%), Positives = 153/291 (52%), Gaps = 1/291 (0%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           I +GINGFG +G+ V   +L    V +VAVND  +S  Y+ Y+ + +S         ++V
Sbjct: 3   ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV 62

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             E+ +L G + + V    +  EI W   G +YVVE TG+++ + +   H+ GGAK V +
Sbjct: 63  VGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFV 122

Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           +  S DAP  + G N++     L +    +     LAP+ + +H+ +G+ E   T +H +
Sbjct: 123 AGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGM 182

Query: 187 TATQKT-VDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
              +       + +DWR  R A   I P     A+ V K+LP L G+++G +F+VP    
Sbjct: 183 QPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVKKG 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
             +D+ VR ++  + E + +A+ E +  +L G+L  ++ D++S D + + +
Sbjct: 243 CAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGK 293

Length = 342

>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 43/235 (18%)

Query: 74  FGEKPVAVFGFRNPEEIP--WAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAP 129
           FG K + V     PE+    +  +  + V  + G       +       A+   VVI   
Sbjct: 47  FGGKSIGV-----PEDAADEFVFSDVDIVFFAAG----GSVSKEVEPKAAEAGCVVIDNS 97

Query: 130 S-----KDAPMFVVGVNE---KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
           S      D P+ V  VN     +Y+    I++N +C+T  L    K +HD FGI   +++
Sbjct: 98  SAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVS 157

Query: 182 TVHSI----------TATQKTVDGPSMKDWRGGRAASFNIIP-----SSTGAAKA----- 221
           T  ++           A Q       +     G   +FN+IP        G  K      
Sbjct: 158 TYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIE 217

Query: 222 --VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
               K+L   + K++    RVP        +TV  +K+   EEI+  +   + G 
Sbjct: 218 AETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPGV 272

Length = 334

>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 39/204 (19%)

Query: 103 STGVFTDKDKAAAHLKGGAKKVVISAPS-----KDAPMFVVGVNEKEYK--PELDIVSNA 155
           S G    K+ A    K G   +VI   S      D P+ V  VN ++ K      I++N 
Sbjct: 68  SAGGSVSKEFAPKAAKAGV--IVIDNTSAFRMDPDVPLVVPEVNFEDLKEFNPKGIIANP 125

Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT-ATQKTVDG--PSMKDWRGGRAA----- 207
           +C+T  +  + K +HD+  I   +++T  +++ A    V+      K    G        
Sbjct: 126 NCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAVLEGAEQLPYIQ 185

Query: 208 ----------SFNIIP------------SSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
                     +FN IP                      K++   + K++    RVP    
Sbjct: 186 PKANKFPYQIAFNAIPHIDSFVDDGYTKEEQKMLFETRKIMGIPDLKVSATCVRVPVFTG 245

Query: 246 SVVDLTVRLEKEATYEEIKNAIKE 269
               + +  EKE + E+ +  +K 
Sbjct: 246 HSESINIEFEKEISPEDARELLKN 269

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978 [Amino acid biosynthesis, Aspartate family]. Length = 338

>gnl|CDD|179786 PRK04207, PRK04207, glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 6  KIKIGINGFGRIGRLVAR-VALQRDDVELVAVNDPFISTDYMTYM 49
           IK+G+NG+G IG+ VA  VA Q  D+ELV V       DY   +
Sbjct: 1  MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAK--TKPDYEARV 42

Length = 341

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 7  IKIGINGF-GRIGRLVARVALQRDDVELVAV 36
          IK+ + G  GR+GR + +  L+  D ELVA 
Sbjct: 1  IKVAVVGASGRMGRELIKAILEAPDFELVAA 31

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 34/146 (23%)

Query: 6   KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
            IK+ + G  GR+GR +       +D+ELVA  D               S         +
Sbjct: 1   MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP------------GSPLVGQGALGV 48

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPE---EIPWAKTGAEY----VVESTGVFTDKDKAAAHL 117
            + D+   +  +  V +  F  PE   E    +   E+    V+ +TG FT++  A   L
Sbjct: 49  AITDDLEAVLADADVLI-DFTTPEATLEN--LEFALEHGKPLVIGTTG-FTEEQLAE--L 102

Query: 118 KGGAKK--VVISAPSKDAPMFVVGVN 141
           +  AKK  VVI      AP F +GVN
Sbjct: 103 EEAAKKIPVVI------APNFSIGVN 122

Length = 257

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 24/145 (16%)

Query: 6   KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
            IK+ + G  GR+GR + R  L+  D+ELVA  D   S      +              +
Sbjct: 2   MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS----LSLGSDAGELAGLGLLGV 57

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPE------EIPWAKTGAEYVVESTGVFTDKDKAAAHLK 118
            V D+  L+  +  V +  F  PE      E    + G   V+ +TG FT++      L+
Sbjct: 58  PVTDDLLLVKADADVLI-DFTTPEATLENLEFA-LEHGKPLVIGTTG-FTEEQLEK--LR 112

Query: 119 GGAKK--VVISAPSKDAPMFVVGVN 141
             A+K  VVI      AP F +GVN
Sbjct: 113 EAAEKVPVVI------APNFSLGVN 131

Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	100.0
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	100.0
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	100.0
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	100.0
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	100.0
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	100.0
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	100.0
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	100.0
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	100.0
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	100.0
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	100.0
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	100.0
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	100.0
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	100.0
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	100.0
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	100.0
KOG0657	285	consensus Glyceraldehyde 3-phosphate dehydrogenase	100.0
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	100.0
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	100.0
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	100.0
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	100.0
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	100.0
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	100.0
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	100.0
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	100.0
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	100.0
PLN02383	344	aspartate semialdehyde dehydrogenase	100.0
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	100.0
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	100.0
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	100.0
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	100.0
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	100.0
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	100.0
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	100.0
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	100.0
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	100.0
PF02800	157	Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase,	100.0
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	99.92
KOG4777	361	consensus Aspartate-semialdehyde dehydrogenase [Am	99.85
PRK08300	302	acetaldehyde dehydrogenase; Validated	99.69
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	99.65
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.52
PF02774	184	Semialdhyde_dhC: Semialdehyde dehydrogenase, dimer	99.27
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	99.16
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.96
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.72
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.61
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.46
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.44
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.43
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	98.38
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.38
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.33
PRK11579	346	putative oxidoreductase; Provisional	98.32
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.3
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	98.29
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.24
PRK06270	341	homoserine dehydrogenase; Provisional	98.2
PRK10206	344	putative oxidoreductase; Provisional	98.04
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.0
PRK06349	426	homoserine dehydrogenase; Provisional	97.86
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	97.71
PRK08374	336	homoserine dehydrogenase; Provisional	97.66
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.6
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.58
PLN02775	286	Probable dihydrodipicolinate reductase	97.57
PRK06392	326	homoserine dehydrogenase; Provisional	97.48
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.42
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.42
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.41
PRK06813	346	homoserine dehydrogenase; Validated	97.39
COG2344	211	AT-rich DNA-binding protein [General function pred	97.39
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	97.18
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.16
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	97.09
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.08
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	97.05
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.0
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.96
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.83
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.81
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	96.76
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.66
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.62
PRK08818	370	prephenate dehydrogenase; Provisional	96.53
PRK07417	279	arogenate dehydrogenase; Reviewed	96.52
PRK08507	275	prephenate dehydrogenase; Validated	96.46
PLN02256	304	arogenate dehydrogenase	96.41
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	96.37
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.3
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.27
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.24
PLN02700	377	homoserine dehydrogenase family protein	96.2
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.2
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.13
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.09
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.01
COG2910	211	Putative NADH-flavin reductase [General function p	95.96
CHL00194	317	ycf39 Ycf39; Provisional	95.9
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	95.89
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.83
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.8
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	95.8
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	95.76
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.74
PRK08618	325	ornithine cyclodeaminase; Validated	95.74
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.72
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.7
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	95.62
PRK06545	359	prephenate dehydrogenase; Validated	95.6
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.55
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.54
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	95.46
PLN02712	667	arogenate dehydrogenase	95.45
PRK07680	273	late competence protein ComER; Validated	95.44
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	95.44
PLN02712	667	arogenate dehydrogenase	95.42
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.38
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	95.26
PTZ00431	260	pyrroline carboxylate reductase; Provisional	95.25
PRK06046	326	alanine dehydrogenase; Validated	95.24
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.2
PRK08605	332	D-lactate dehydrogenase; Validated	95.19
COG3804	350	Uncharacterized conserved protein related to dihyd	95.18
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	95.18
PLN02688	266	pyrroline-5-carboxylate reductase	95.15
PRK09414	445	glutamate dehydrogenase; Provisional	95.12
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.03
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	94.94
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	94.9
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.84
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.84
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	94.73
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	94.67
PRK06223	307	malate dehydrogenase; Reviewed	94.54
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	94.47
PRK12480	330	D-lactate dehydrogenase; Provisional	94.43
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	94.43
PRK07574	385	formate dehydrogenase; Provisional	94.39
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.38
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.35
PRK13243	333	glyoxylate reductase; Reviewed	94.19
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.15
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	94.05
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.01
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	93.88
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	93.85
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.83
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.71
PLN00203	519	glutamyl-tRNA reductase	93.7
PRK08655	437	prephenate dehydrogenase; Provisional	93.54
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.54
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.51
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	93.51
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.49
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.25
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.21
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	93.2
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.15
PTZ00117	319	malate dehydrogenase; Provisional	93.06
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.06
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	93.02
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.0
PLN00016	378	RNA-binding protein; Provisional	92.82
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	92.79
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	92.77
PRK15059	292	tartronate semialdehyde reductase; Provisional	92.68
PRK05479	330	ketol-acid reductoisomerase; Provisional	92.68
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.61
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	92.54
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	92.53
PLN02602	350	lactate dehydrogenase	92.48
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	92.39
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	92.36
PRK14982	340	acyl-ACP reductase; Provisional	92.29
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	92.22
PTZ00325	321	malate dehydrogenase; Provisional	92.14
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.11
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	92.1
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.01
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.92
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	91.89
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	91.88
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.82
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.81
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.6
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	91.48
COG5322	351	Predicted dehydrogenase [General function predicti	91.42
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.34
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	91.26
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	91.1
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.01
PRK13403	335	ketol-acid reductoisomerase; Provisional	90.96
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	90.94
PRK14030	445	glutamate dehydrogenase; Provisional	90.85
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	90.82
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	90.72
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.42
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.41
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	90.38
PRK05442	326	malate dehydrogenase; Provisional	90.36
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	90.27
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	90.23
PLN02477	410	glutamate dehydrogenase	90.15
PRK06487	317	glycerate dehydrogenase; Provisional	90.03
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	90.01
PRK14031	444	glutamate dehydrogenase; Provisional	89.99
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	89.98
PTZ00075	476	Adenosylhomocysteinase; Provisional	89.78
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	89.7
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	89.61
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	89.59
PLN02214	342	cinnamoyl-CoA reductase	89.54
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	89.51
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.49
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	89.42
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	89.36
PLN00106	323	malate dehydrogenase	89.32
PRK06932	314	glycerate dehydrogenase; Provisional	89.32
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.29
PRK06199	379	ornithine cyclodeaminase; Validated	89.19
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	89.16
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	89.11
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	88.97
PLN02858	1378	fructose-bisphosphate aldolase	88.73
PRK08291	330	ectoine utilization protein EutC; Validated	88.69
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.64
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	88.46
PRK06407	301	ornithine cyclodeaminase; Provisional	88.36
PLN02928	347	oxidoreductase family protein	88.29
PLN02166	436	dTDP-glucose 4,6-dehydratase	88.1
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	88.06
PRK07340	304	ornithine cyclodeaminase; Validated	87.92
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	87.79
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	87.77
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	87.77
PRK06436	303	glycerate dehydrogenase; Provisional	87.74
PRK07236	386	hypothetical protein; Provisional	87.63
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	87.52
PLN02206	442	UDP-glucuronate decarboxylase	87.46
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	87.31
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	87.25
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.19
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	87.15
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	87.07
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	87.06
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	87.01
PLN02494	477	adenosylhomocysteinase	86.89
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	86.67
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	86.56
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	86.34
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.21
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.1
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	86.05
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	86.03
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	86.02
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	85.97
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	85.8
PLN02306	386	hydroxypyruvate reductase	85.79
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	85.73
PLN03139	386	formate dehydrogenase; Provisional	85.71
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	85.65
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	85.64
COG3268	382	Uncharacterized conserved protein [Function unknow	85.49
PRK06823	315	ornithine cyclodeaminase; Validated	85.47
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	85.02
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	84.99
PLN02353	473	probable UDP-glucose 6-dehydrogenase	84.77
PLN00112	444	malate dehydrogenase (NADP); Provisional	84.69
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	84.59
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	84.35
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	84.34
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	84.14
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	84.09
PRK13940	414	glutamyl-tRNA reductase; Provisional	83.93
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.67
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	83.48
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	83.44
PLN03209	576	translocon at the inner envelope of chloroplast su	83.34
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	83.24
PRK06141	314	ornithine cyclodeaminase; Validated	82.81
COG0569	225	TrkA K+ transport systems, NAD-binding component [	82.8
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	82.66
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	82.66
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	82.61
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	82.51
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.32
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	82.02
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.97
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	81.97
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.96
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	81.87
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	81.78
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	81.68
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	81.68
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	81.51
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	81.24
PLN02586	360	probable cinnamyl alcohol dehydrogenase	81.21
PLN02858	1378	fructose-bisphosphate aldolase	81.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	80.93
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	80.76
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	80.71
PLN02427	386	UDP-apiose/xylose synthase	80.57
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	80.48
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	80.48
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	80.48
PRK07589	346	ornithine cyclodeaminase; Validated	80.42
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	80.06

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-78  Score=552.60  Aligned_cols=290  Identities=57%  Similarity=0.942  Sum_probs=274.8

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC----CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceee--------eCCcee
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV--------KDEKTL   72 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~----p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~--------~~~~~l   72 (296)
                      |++||||||||||||.++|++.+.    +++|+|+|||+..++++++|+|+|||+||+|+ +.+..        +++ .|
T Consensus         2 m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~l   79 (361)
T PTZ00434          2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-VL   79 (361)
T ss_pred             CceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-EE
Confidence            558999999999999999998764    68999999997678999999999999999999 77765        344 69


Q ss_pred             EECCEEEEEE-ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCC-CC
Q 022491           73 LFGEKPVAVF-GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-EL  149 (296)
Q Consensus        73 ~~~~~~i~~~-~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~-~~  149 (296)
                      .+||+.|.++ +++||++++|.+.++|+|+||||.|.+++.+..|+++|+|||+||+|++| .+++|||+|++.|++ ..
T Consensus        80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~  159 (361)
T PTZ00434         80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH  159 (361)
T ss_pred             EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence            9999999986 88899999999999999999999999999999999999999999999886 679999999999985 47


Q ss_pred             CeEEcCCcchhhhHhHHHHH-HhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccc
Q 022491          150 DIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPA  228 (296)
Q Consensus       150 ~iIs~p~C~~tal~~~l~~L-~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pe  228 (296)
                      ++|||+||||+||+|+++.| +++|||++++|||+|++|++|+++|+++++|||++|++++||||+.+|+++++.+++|+
T Consensus       160 ~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP~  239 (361)
T PTZ00434        160 HVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPS  239 (361)
T ss_pred             cEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceeccc
Confidence            89999999999999999999 79999999999999999999999999966799999999999999999999999999999


Q ss_pred             cCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          229 LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       229 l~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |+|+++++++|||+.+|++++++++++++++.|||+++|+++++++|||||+|+|+|+||+||+|+||
T Consensus       240 L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~  307 (361)
T PTZ00434        240 TKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNR  307 (361)
T ss_pred             cCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999996

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=100.00  E-value=4.8e-76  Score=536.19  Aligned_cols=288  Identities=65%  Similarity=1.031  Sum_probs=274.6

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++||||||||||||.++|++.+++++|+|+|||. .++++++|+|+|||+||+|+ +.+..+++ .|.++|+.|.++++
T Consensus         1 m~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~   77 (331)
T PRK15425          1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAE   77 (331)
T ss_pred             CceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEc
Confidence            34899999999999999999888899999999996 78899999999999999999 88877665 59999999999998


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~  163 (296)
                      ++|++++|.+.++|+||||||.+.+++.++.|+++|+|+|++|+++++ .|++|||+|++.++ ..++||||+|+|+|++
T Consensus        78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~-~~~IISnaSCtTn~La  156 (331)
T PRK15425         78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLA  156 (331)
T ss_pred             CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcC-CCCEEECCCcHHHHHH
Confidence            899999998889999999999999999999999999999999998775 79999999999997 5789999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeC
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~  243 (296)
                      |+++||+++|||+++.+||+|++|++|.++|+++.+++|++|++++|++|+.+|+++++.+++|+|+|+++++++||||+
T Consensus       157 pvlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~  236 (331)
T PRK15425        157 PLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP  236 (331)
T ss_pred             HHHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEeccc
Confidence            99999999999999999999999999999998866799999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       244 ~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +||+.+++++++++++.||++++|+++++++||||++|+++|+||+||+|+||
T Consensus       237 ~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~  289 (331)
T PRK15425        237 NVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVC  289 (331)
T ss_pred             CeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCc
Confidence            99999999999999999999999999999999999999999999999999997

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=6.8e-76  Score=536.39  Aligned_cols=290  Identities=67%  Similarity=1.062  Sum_probs=275.3

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++||||||||||||.++|++.+++++|+|+|||+..++++++|+|+|||+||+|+ +.+..+++ .|.+||+.|+++++
T Consensus         1 m~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~~   78 (337)
T PTZ00023          1 MVVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFFE   78 (337)
T ss_pred             CceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEeC
Confidence            45899999999999999999888899999999997678999999999999999999 88877665 59999999999999


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~  163 (296)
                      +||.+++|.+.++|+||||||.+.++++++.|+++|+|+|++|++.++ .|++|||+|++.+++..+|||||+|+|+|++
T Consensus        79 ~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~La  158 (337)
T PTZ00023         79 KDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLA  158 (337)
T ss_pred             CChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHH
Confidence            999999999999999999999999999999999999999999988765 7999999999999855689999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCC--CccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~--~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      |+++||++.|||+++.+||+|++|..|..+|+++  .+++|++|++++|++|+.+|+++++.+++|||+++++++++|||
T Consensus       159 p~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVP  238 (337)
T PTZ00023        159 PLAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP  238 (337)
T ss_pred             HHHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEec
Confidence            9999999999999999999999999999999875  36899999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+||||
T Consensus       239 t~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~  293 (337)
T PTZ00023        239 VPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKR  293 (337)
T ss_pred             ccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCC
Confidence            9999999999999999999999999999999999999999999999999999997

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=100.00  E-value=3.5e-75  Score=541.96  Aligned_cols=289  Identities=49%  Similarity=0.800  Sum_probs=273.2

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |++||||||||||||.++|.+.++  +++|+|+|||. .++++++|+|+|||+||+|+ +.++..+++.|.++|+.|.++
T Consensus        74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~~L~v~Gk~I~V~  151 (442)
T PLN02237         74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDETISVDGKPIKVV  151 (442)
T ss_pred             ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCCEEEECCEEEEEE
Confidence            679999999999999999998755  78999999997 78899999999999999999 887653344699999999999


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCCC-CCeEEcCCcch
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPE-LDIVSNASCTT  159 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~~-~~iIs~p~C~~  159 (296)
                      +.++|.+++|.+.++|+||||||.+.++++++.|+++|+|+|+++++..+  +|++|||+|++.|++. .+|||||+|+|
T Consensus       152 ~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTT  231 (442)
T PLN02237        152 SNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTT  231 (442)
T ss_pred             EcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHH
Confidence            88899999998889999999999999999999999999999999988664  7999999999999854 68999999999


Q ss_pred             hhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEE
Q 022491          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR  239 (296)
Q Consensus       160 tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~  239 (296)
                      +||+|+++||+++|||+++.|||+|++|++|+++|+++ +|||++|++++||||+.+|+++++.+++|+|+|++.++++|
T Consensus       232 NcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~R  310 (442)
T PLN02237        232 NCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALR  310 (442)
T ss_pred             HHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCceeeEEEe
Confidence            99999999999999999999999999999999999997 79999999999999999999999999999999999999999


Q ss_pred             eeeCceEEEEEEEEeec-CCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          240 VPTVDVSVVDLTVRLEK-EATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       240 VP~~~g~~~~~~~~l~~-~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||+.+|+++++++++++ +++.|||+++|+++++++|||||+|+++|+||+||+|+||
T Consensus       311 VPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~  368 (442)
T PLN02237        311 VPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDV  368 (442)
T ss_pred             cccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCc
Confidence            99999999999999998 7999999999999999999999999999999999999997

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=5.2e-75  Score=529.93  Aligned_cols=287  Identities=48%  Similarity=0.805  Sum_probs=272.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |+||||||||||||.++|++.++  +++|+|+||+. .++++++|+|+|||+||+|+ +.+..+++ .|.+||+.|.+++
T Consensus         1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~   77 (337)
T PRK07403          1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVS   77 (337)
T ss_pred             CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEE
Confidence            38999999999999999998776  68999999997 78899999999999999999 88776554 6999999999999


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCC-CCCeEEcCCcchh
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTN  160 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~-~~~iIs~p~C~~t  160 (296)
                      +.||+++||.+.++|+||||||.+.+++.++.|+++|+|+|++|+++.+  .|++|||+|++.+++ ..++||||+|+|+
T Consensus        78 ~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn  157 (337)
T PRK07403         78 DRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTN  157 (337)
T ss_pred             cCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHH
Confidence            8899999998889999999999999999999999999999999988654  599999999999974 4689999999999


Q ss_pred             hhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEe
Q 022491          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (296)
Q Consensus       161 al~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~V  240 (296)
                      |++|+++||+++|||+++.+||+|++|++|+++|.++ +++|++|++++|+||+.+|+++++.+++|+|+|+++++++||
T Consensus       158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRV  236 (337)
T PRK07403        158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRV  236 (337)
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEe
Confidence            9999999999999999999999999999999999998 699999999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       241 P~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |+++||+++++++++++++.|||+++|+++++++|||||+|+++|+||+||+||||
T Consensus       237 Pt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~  292 (337)
T PRK07403        237 PTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDA  292 (337)
T ss_pred             ccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCC
Confidence            99999999999999999999999999999999999999999999999999999987

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=100.00  E-value=1.5e-74  Score=529.49  Aligned_cols=294  Identities=91%  Similarity=1.362  Sum_probs=279.6

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCc-ceeeeCCceeEECCEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPV   79 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~-~v~~~~~~~l~~~~~~i   79 (296)
                      |+.. ++||||+|+|+||+.++|.+.++|++|+++|+|+..++++++|+|+|||+||+|+ + .+..++|+.|.++|+.|
T Consensus         1 ~~~~-~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i   78 (338)
T PLN02358          1 MADK-KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPV   78 (338)
T ss_pred             CCCC-ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEE
Confidence            5643 5899999999999999999998999999999997688999999999999999998 5 77765666799999999


Q ss_pred             EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcch
Q 022491           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT  159 (296)
Q Consensus        80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~  159 (296)
                      .++...||++++|.+.++|+||||||.+.++++++.|+++|+|+|++|++++|.|++|||+|++.+++..++||||||+|
T Consensus        79 ~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTT  158 (338)
T PLN02358         79 TVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTT  158 (338)
T ss_pred             EEEEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchH
Confidence            99998899999998889999999999999999999999999999999999888899999999999986578999999999


Q ss_pred             hhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEE
Q 022491          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR  239 (296)
Q Consensus       160 tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~  239 (296)
                      +||+|+|+||++.|||+++.|||+|++|++|+++|+++.+++|++|++++|++|+.+|+++++.+++|+++++++++++|
T Consensus       159 n~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avR  238 (338)
T PLN02358        159 NCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFR  238 (338)
T ss_pred             HHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEE
Confidence            99999999999999999999999999999999999886679999999999999999999999999999999999999999


Q ss_pred             eeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       240 VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||+++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+|+||
T Consensus       239 VPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~  295 (338)
T PLN02358        239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNR  295 (338)
T ss_pred             eeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCc
Confidence            999999999999999999999999999999999999999999999999999999997

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=100.00  E-value=1.3e-74  Score=537.69  Aligned_cols=289  Identities=76%  Similarity=1.169  Sum_probs=275.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||||||||||||.++|.+..++++++++|||+..+.++++|+|+|||+||+|+ +.++..++..|.++|+.|.+++.++
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~~l~~~G~~I~V~~~~d  164 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDSTLEINGKQIKVTSKRD  164 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCCEEEECCEEEEEEecCC
Confidence            799999999999999999887788999999997788999999999999999999 8887523336999999999999889


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHhHH
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA  166 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~l  166 (296)
                      |++++|.+.++|+||||||.+.+++.++.|+++|+|++|||+|++|.|++|||+|++.|++..+|||||+|+|+||+|++
T Consensus       165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap~l  244 (421)
T PLN02272        165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA  244 (421)
T ss_pred             cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHHHH
Confidence            99999987799999999999999999999999999999999998888999999999999865789999999999999999


Q ss_pred             HHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCceE
Q 022491          167 KVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS  246 (296)
Q Consensus       167 ~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~g~  246 (296)
                      +||++.|||+++.|||+|++|++|+++|+++.++++++|++++|+||+.+|++++..+++|+|+|+++++++||||++||
T Consensus       245 k~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~gs  324 (421)
T PLN02272        245 KVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVS  324 (421)
T ss_pred             HHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCceE
Confidence            99999999999999999999999999998866799999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       247 ~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +.+++++++++++.||++++|+++++++|||||+|+|+|+||+||+|+||
T Consensus       325 ~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~  374 (421)
T PLN02272        325 VVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSR  374 (421)
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCC
Confidence            99999999999999999999999999999999999999999999999997

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=100.00  E-value=2e-74  Score=534.07  Aligned_cols=289  Identities=47%  Similarity=0.769  Sum_probs=275.5

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |++||||||||+|||.++|+|.++  |.+++++|||. .++++++|+|+|||+||+|+ +.+..++|+.|.++|+.|.++
T Consensus        59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~  136 (395)
T PLN03096         59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVV  136 (395)
T ss_pred             cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEE
Confidence            668999999999999999999876  78999999997 78899999999999999999 888765666799999999999


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhh
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNC  161 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~ta  161 (296)
                      +++||++++|.+.++|+||||||.+.+++.++.|+++|+|+|++++++++ +|++|||+|++.|++..+|||||+|+|+|
T Consensus       137 ~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~  216 (395)
T PLN03096        137 SDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNC  216 (395)
T ss_pred             EcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHH
Confidence            99999999998889999999999999999999999999999999998765 79999999999998557899999999999


Q ss_pred             hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      |+|++++|+++|||+++.|||+|++|++|+++|+++ +++|++|++++|+||+.+|+++++.+++|+|+|+++++++|||
T Consensus       217 LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVP  295 (395)
T PLN03096        217 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVP  295 (395)
T ss_pred             HHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEcc
Confidence            999999999999999999999999999999999987 6999999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+|+||
T Consensus       296 v~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~  350 (395)
T PLN03096        296 TPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDV  350 (395)
T ss_pred             ccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCC
Confidence            9999999999999999999999999999999999999999999999999999997

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=5.8e-74  Score=523.54  Aligned_cols=288  Identities=48%  Similarity=0.819  Sum_probs=272.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++||||||||||||.++|++.+++++|+|+|||. .++++++|+|+|||+||+|+ +.+..+++ .|.+||+.|+++++
T Consensus         1 m~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~   77 (343)
T PRK07729          1 MKTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNN   77 (343)
T ss_pred             CceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEc
Confidence            45899999999999999999888899999999997 78999999999999999999 88876555 69999999999999


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCC-CCCeEEcCCcchhhh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCL  162 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~-~~~iIs~p~C~~tal  162 (296)
                      +||+++||.+.++|+||||||.+.++++++.|+++|+|+|++|+++.+ ++++|||+|++.|++ ..++||||+|+|+||
T Consensus        78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~L  157 (343)
T PRK07729         78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCL  157 (343)
T ss_pred             CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHH
Confidence            999999998889999999999999999999999999999999988665 556799999999975 368999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~  242 (296)
                      +|+++||++.|||+++.+||+|++|++|+++|.++ +++|++|+++.|++|..+|+++++.+++|+++|+++++++|||+
T Consensus       158 ap~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt  236 (343)
T PRK07729        158 APVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPT  236 (343)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeee
Confidence            99999999999999999999999999999999987 69999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       243 ~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++||+.+++++++++++.||++++|+++++++||||++|+++|+||+||+|+||
T Consensus       237 ~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~  290 (343)
T PRK07729        237 PNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTH  290 (343)
T ss_pred             cCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCc
Confidence            999999999999999999999999999999999999999999999999999997

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=100.00  E-value=2.2e-72  Score=513.04  Aligned_cols=286  Identities=59%  Similarity=0.967  Sum_probs=270.9

Q ss_pred             EEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE-EEEEEec
Q 022491            8 KIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK-PVAVFGF   84 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~-~i~~~~~   84 (296)
                      ||||||||||||.++|++.++  +++++|+|||. .++++++|+|+|||+||+|+ +.+..++++.|.++|+ .|.+++.
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~   78 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE   78 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence            699999999999999998877  58999999997 78999999999999999999 8887655424999999 9999998


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~  163 (296)
                      .+|++++|.+.++|+||||||.+.+++.++.|+++|+|+|++|+++.| +|++|||+|++.+++..++||||+|+|+|++
T Consensus        79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La  158 (327)
T TIGR01534        79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA  158 (327)
T ss_pred             CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence            899999998889999999999999999999999999999999998776 7999999999999865789999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeC
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~  243 (296)
                      |+|+||++.|||+++.+||+|++|++|+++|+++ ++++++|++++|++|+.+|+++++.+++|+++++++++++||||+
T Consensus       159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~  237 (327)
T TIGR01534       159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP  237 (327)
T ss_pred             HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence            9999999999999999999999999999999887 588999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       244 ~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +||+.+++++++++++.||++++|+++++++||||++|+++|+||+||+|+||
T Consensus       238 ~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~  290 (327)
T TIGR01534       238 NVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPY  290 (327)
T ss_pred             CeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCc
Confidence            99999999999999999999999999999999999999999999999999997

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2e-72  Score=513.19  Aligned_cols=290  Identities=30%  Similarity=0.547  Sum_probs=270.4

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECC-EEEEEEe
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE-KPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~-~~i~~~~   83 (296)
                      |++||||||||||||.++|++.+++++|+|+|||+..++++++|+|+|||+||+|+.+.+..+++ .|.+|| +.|.+++
T Consensus         1 m~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~   79 (342)
T PTZ00353          1 LPITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSA   79 (342)
T ss_pred             CCeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEe
Confidence            44799999999999999999888889999999996578999999999999999995246766555 599998 8999999


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~  163 (296)
                      +.+|++++|.+.++|+||||||.+.+.+.+..|+++|+|+++|+.+++|.|++|||+|++.|++..++||||+|+|+|++
T Consensus        80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~La  159 (342)
T PTZ00353         80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALA  159 (342)
T ss_pred             cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHH
Confidence            99999999988899999999999999999999999999999999999889999999999999865789999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCC--ccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~--~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      |+++||+++|||++++|||+|+++ .+...|.+++  +++|++|.+.+|++|..+|..+++.+++|+|+|+++++++|||
T Consensus       160 pvlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVP  238 (342)
T PTZ00353        160 PVIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVP  238 (342)
T ss_pred             HHHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEcc
Confidence            999999999999999999999996 5667776553  7999999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |++||+.+++++++++++.||++++|+++++++|||||+|+|+|+||+||+|||+
T Consensus       239 t~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~~  293 (342)
T PTZ00353        239 VKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGK  293 (342)
T ss_pred             ccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCCC
Confidence            9999999999999999999999999999999999999999999999999999985

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=8.8e-72  Score=510.47  Aligned_cols=287  Identities=42%  Similarity=0.751  Sum_probs=271.0

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++||||+|+|+||+.++|.+.+++++++++++++..+.++++|+|+|||+||+|+ +.+.. .|+.|.++|+.|.++++
T Consensus         1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~-~g~~l~~~g~~i~v~~~   78 (334)
T PRK08955          1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTA-EGDAIVINGKRIRTTQN   78 (334)
T ss_pred             CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEE-cCCEEEECCEEEEEEec
Confidence            34899999999999999999999999999999997678999999999999999998 77764 34469999999999988


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCC-CCCeEEcCCcchhh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTNC  161 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~-~~~iIs~p~C~~ta  161 (296)
                      +++++++|.  ++|+||||||.+.++++++.|+++|+|+|++|+++.+  .|++|||+|++.+++ ..+|||||+|+|+|
T Consensus        79 ~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~  156 (334)
T PRK08955         79 KAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNC  156 (334)
T ss_pred             CChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHH
Confidence            899999995  9999999999999999999999999999999988654  699999999999985 36899999999999


Q ss_pred             hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      ++|+++||++.|||+++.|||+|++|.+|+.+|+++ +++|++|++++|++|+.+|++++..+++|+|+|+++++++|||
T Consensus       157 Lap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVP  235 (334)
T PRK08955        157 LAPVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVP  235 (334)
T ss_pred             HHHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEec
Confidence            999999999999999999999999999999999987 5889999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +++||+.+++++++++++.||++++|+++.+++|||||+|+|+|+||+||+|+||
T Consensus       236 v~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~  290 (334)
T PRK08955        236 LANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPR  290 (334)
T ss_pred             cCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCc
Confidence            9999999999999999999999999999999999999999999999999999997

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-71  Score=509.77  Aligned_cols=286  Identities=37%  Similarity=0.686  Sum_probs=270.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC---CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~---p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||||||||+|||.++|+|.++   +++++++|||. .+.++++|+|+|||+||+|+ +.++..++ .|.++|+.|.+++
T Consensus         2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~   78 (336)
T PRK13535          2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQERD-QLFVGDDAIRLLH   78 (336)
T ss_pred             eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEE
Confidence            7999999999999999999874   57999999997 78999999999999999999 77765444 6999999999999


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-C-CCeEEcccChhccCCCCCeEEcCCcchhh
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNC  161 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d-~~~~v~gvn~~~l~~~~~iIs~p~C~~ta  161 (296)
                      +++|++++|...++|+||||||.+.++++++.|+++|+|+|++|+++. | .+++|||+|++.|++..+|||||+|+|+|
T Consensus        79 ~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~  158 (336)
T PRK13535         79 ERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNC  158 (336)
T ss_pred             cCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHH
Confidence            999999999888999999999999999999999999999999999975 4 45899999999998657899999999999


Q ss_pred             hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      ++|+++||+++|||+++.|||+|++|..|+++|+++ +++|++|.+++|++|+.++.+++..+++|+++++++++++|||
T Consensus       159 Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRVP  237 (336)
T PRK13535        159 IIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRVP  237 (336)
T ss_pred             HHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEeC
Confidence            999999999999999999999999999999999987 6999999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+|+||
T Consensus       238 v~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~  292 (336)
T PRK13535        238 TINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPH  292 (336)
T ss_pred             ccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCc
Confidence            9999999999999999999999999999999999999999999999999999997

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-71  Score=497.40  Aligned_cols=287  Identities=62%  Similarity=0.947  Sum_probs=275.0

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||||||+|||.++|++.+++ ++|+|+||+. .+++++||+++||++||+|. +.+...++ .+.++++.|+++..
T Consensus         1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~   77 (335)
T COG0057           1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAE   77 (335)
T ss_pred             CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEec
Confidence            389999999999999999999998 7999999997 78999999999999999999 77664444 59999999999999


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC-CCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG-GAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCL  162 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~-G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal  162 (296)
                      .+|+.++|.+.++|+|+||||.|.+++.+++|+++ |+|+|++++++.+ ++++|||+|++.++.++++|||.|||||||
T Consensus        78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcL  157 (335)
T COG0057          78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCL  157 (335)
T ss_pred             CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhh
Confidence            99999999999999999999999999999999988 5999999999987 999999999999987789999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~  242 (296)
                      +|++++|+++|||+++.|||+|++|++|+.+|++| +++|++|+++.|++|..+|+++++.+++|||+|+++++++|||+
T Consensus       158 ap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt  236 (335)
T COG0057         158 APVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT  236 (335)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence            99999999999999999999999999999999999 58999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       243 ~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +.+|+.++++++++++|.|||+++|++++++.+||+++|+|+|+||+||+|+||
T Consensus       237 ~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~  290 (335)
T COG0057         237 PNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPH  290 (335)
T ss_pred             CCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcc
Confidence            999999999999999999999999999999999999999999999999999986

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=1.4e-69  Score=505.25  Aligned_cols=288  Identities=39%  Similarity=0.621  Sum_probs=270.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC----CCcEEEEEecC---CCChhhhhhcccccccCCCCcCcceeeeC-CceeEECCEE
Q 022491            7 IKIGINGFGRIGRLVARVALQR----DDVELVAVNDP---FISTDYMTYMFKYDSVHGQWKHNELKVKD-EKTLLFGEKP   78 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~----p~~elv~i~~~---~~~~~~~a~~l~~~s~~~~~~~~~v~~~~-~~~l~~~~~~   78 (296)
                      .||||||||||||.++|++.++    +++++++|+++   ..+++++||+|+|||+||+|+ +.+...+ +..|.+||+.
T Consensus       128 ~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~~liing~~  206 (477)
T PRK08289        128 RDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFN-GTITVDEENNAIIANGNY  206 (477)
T ss_pred             ceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCC-CceEeecCCCEEEECCEE
Confidence            6999999999999999998876    58999999631   257789999999999999999 8877652 3369999999


Q ss_pred             EEEEecCCCCCCCcccCCCc--EEEEccCCccCHHHHHHHHH-CCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEc
Q 022491           79 VAVFGFRNPEEIPWAKTGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSN  154 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~D--vV~~at~~~~~~~~~~~~l~-~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~  154 (296)
                      |+++.+.+|+++||.+.++|  +|+||||.|...+.+.+|++ +|+|||++++|+++ +|++|||+|++.+++..+||||
T Consensus       207 I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IISn  286 (477)
T PRK08289        207 IQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSA  286 (477)
T ss_pred             EEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEEC
Confidence            99999999999999999999  99999999999999999999 89999999999886 7999999999999755789999


Q ss_pred             CCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCcee
Q 022491          155 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLT  234 (296)
Q Consensus       155 p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~  234 (296)
                      |||+|+|++|++++|++.|||+++.|||+|++|+.|+++|+++ +++|++|++++|++|+.+|+++++.+++|+|+|+++
T Consensus       287 ASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GKlt  365 (477)
T PRK08289        287 ASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGKLT  365 (477)
T ss_pred             CccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChhhhhhhcccccCCcEE
Confidence            9999999999999999999999999999999999999999998 589999999999999999999999999999999999


Q ss_pred             EEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh-cCcCCCcccccCC-ceeeecCCCCCC
Q 022491          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES-EGKLKGILGYTEE-DVVSTDFVGDSR  296 (296)
Q Consensus       235 ~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~-~~~~~~~~~~~~~-~~vs~d~~~~~~  296 (296)
                      ++++||||++|++++++++++++++.||++++|++++ +++|+|+++|+++ |+||+||+|+||
T Consensus       366 g~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~  429 (477)
T PRK08289        366 GNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRH  429 (477)
T ss_pred             EEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCc
Confidence            9999999999999999999999999999999999999 4899999999999 799999999986

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=100.00  E-value=4.4e-69  Score=492.44  Aligned_cols=285  Identities=38%  Similarity=0.697  Sum_probs=267.8

Q ss_pred             EEEEEecCHHHHHHHHHHHcCC---CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            8 KIGINGFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p---~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||||||||+|||.++|+|.+++   ++++++|++. .+.++++|+++|||+|++|+ +.+...++ .|.++|+.|.++++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~   77 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKVDGD-CLHVNGDCIRVLHS   77 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEEeCC-EEEECCeEEEEEEc
Confidence            6999999999999999998764   6999999996 67899999999999999998 77765444 69999999999999


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-C-CCeEEcccChhccCCCCCeEEcCCcchhhh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNCL  162 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal  162 (296)
                      .+|++++|...++|+||+|||.+.+++++++|+++|++++++++++. + ..++|||+|++.+++..+|||||+|+|+||
T Consensus        78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l  157 (325)
T TIGR01532        78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI  157 (325)
T ss_pred             CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence            99999999888999999999999999999999999999999998865 3 358999999999985578999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~  242 (296)
                      +|+++||++.|||+++.|||+|++|+.|+++|+++ +++|++|.+.+|++|+.++..+++.+++|+|+++++++++|||+
T Consensus       158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv  236 (325)
T TIGR01532       158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPT  236 (325)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecc
Confidence            99999999999999999999999999999999997 69999998888999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       243 ~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++||+.+++++++++++.||++++|+++++++|||||+|+++|+||+||+||||
T Consensus       237 ~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~  290 (325)
T TIGR01532       237 VNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPH  290 (325)
T ss_pred             cCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCc
Confidence            999999999999999999999999999999999999999999999999999996

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-50  Score=350.80  Aligned_cols=256  Identities=65%  Similarity=1.045  Sum_probs=243.7

Q ss_pred             CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCCCCCCcccCCCcEEEEccCCc
Q 022491           28 RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVF  107 (296)
Q Consensus        28 ~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~  107 (296)
                      ..+++++++|+++.+.++++|+++||++||+|+ +.++.+++ .+.++|..|.++++++|..++|...+.|+|+++|+.|
T Consensus         8 ~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g~~~v~e~tg~f   85 (285)
T KOG0657|consen    8 RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKGADIVVESTGVF   85 (285)
T ss_pred             cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCccccccceeEeeccccc
Confidence            455999999999889999999999999999999 88887776 4677899999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecC
Q 022491          108 TDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT  187 (296)
Q Consensus       108 ~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~s  187 (296)
                      ++.+.+..|+++|+|+++|++++.|.|++|+|+|.++++++..+|||.+|+++|++|..+.++++|||.+++|||+|+++
T Consensus        86 ~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~EgLMtTvha~t  165 (285)
T KOG0657|consen   86 TTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIMEGLMTTVHAIT  165 (285)
T ss_pred             cccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccccccccceeeec
Confidence            99999999999999999999999999999999999999876669999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHH
Q 022491          188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI  267 (296)
Q Consensus       188 g~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~  267 (296)
                      .+|+.+|++++++||.||.+.+|++|..+|+++++.+++|||+|++++++||||+. ....+++++++++.+.|++++++
T Consensus       166 atQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k~a~~ddikkvv  244 (285)
T KOG0657|consen  166 ATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEKPAKYDDIKKVV  244 (285)
T ss_pred             cccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeecccccccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             HHhhcCcCCCcccccCCceee
Q 022491          268 KEESEGKLKGILGYTEEDVVS  288 (296)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~vs  288 (296)
                      +++.+++|||||  +|+.++|
T Consensus       245 k~~~~~~lkGIL--te~~fIS  263 (285)
T KOG0657|consen  245 KLASEIPLKGIL--TEHHFIS  263 (285)
T ss_pred             HHhhcccccccc--cccceee
Confidence            999999999999  8887655

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=100.00  E-value=2e-41  Score=309.51  Aligned_cols=234  Identities=24%  Similarity=0.322  Sum_probs=199.5

Q ss_pred             EEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChh---hhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD---YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~---~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |||||||+||+.++|.+.++|++|+++|+|.  +++   .++++++|+++|+ +....+..+++ .+.+++         
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~-~~~~~~~~~~~-~l~v~g---------   67 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAA-SEEFIPRFEEA-GIEVAG---------   67 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEee-cCCcceEeccC-ceEecC---------
Confidence            6999999999999999998899999999995  444   7778888999883 43122322221 232222         


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~  163 (296)
                      +++++.   .++|+|++|||.+.+....+.|++.|+|++++++++++  +++||||+|.+.+. +.++|+|.||+||||+
T Consensus        68 ~~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~-~~~~vs~aSCtTn~La  143 (333)
T TIGR01546        68 TLEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAAL-GKDYVRVVSCNTTGLV  143 (333)
T ss_pred             CHHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcC-cCceEEecCchHhhHH
Confidence            456662   57999999999999999999999999999999999886  57899999999987 5569999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeec-cC---ChhhHHHHhccccCCceeEEEEE
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMSFR  239 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~-~~---g~~~~~~~~~pel~~~v~~~~~~  239 (296)
                      |++++|++.|||+++.+|++|+ +++|+        ++|+||  ++||+|. .+   .+.+.+.+++|+|+  +.+.++|
T Consensus       144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~Avr  210 (333)
T TIGR01546       144 RTLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFV  210 (333)
T ss_pred             HHHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEE
Confidence            9999999999999999999997 77763        677788  5899998 33   56899999999998  9999999


Q ss_pred             eeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (296)
Q Consensus       240 VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~  272 (296)
                      ||++.+|+++++++++++++.|||+++|+++.+
T Consensus       211 VPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r  243 (333)
T TIGR01546       211 VPTTLMHVHSIMVELKKPVTKDDIIDILENTPR  243 (333)
T ss_pred             eCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence            999999999999999999999999999999875

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-40  Score=307.52  Aligned_cols=229  Identities=24%  Similarity=0.356  Sum_probs=187.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||+|+|+ |++|++|+|+|.+  ||.++++++.+. .+.+.   .                      +.+++..+.+. 
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-~~~g~---~----------------------l~~~g~~i~v~-   54 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-RSAGK---E----------------------LSFKGKELKVE-   54 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-ccCCC---e----------------------eeeCCceeEEe-
Confidence            79999999 9999999999998  799999999765 33221   1                      11222223332 


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCC--CCeEEcCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--LDIVSNAS  156 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~--~~iIs~p~  156 (296)
                        +++..+|  .++|+||+|+|++.+++++++++++|+  +|||+|++     +.|..+||+|++.++..  .++|||||
T Consensus        55 --d~~~~~~--~~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~  128 (334)
T PRK14874         55 --DLTTFDF--SGVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPN  128 (334)
T ss_pred             --eCCHHHH--cCCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECcc
Confidence              3444456  489999999999999999999999999  89999886     37899999999999742  37999999


Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc------------cCCCC--CccccCcccccceeeecc-----CC
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPS--MKDWRGGRAASFNIIPSS-----TG  217 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~------------~d~~~--~~~~~~~r~~~~ni~P~~-----~g  217 (296)
                      ||+||++|+|+||++.|+|++..++++|++||+|+.            +|.++  .++.+++|++++|++|+.     +|
T Consensus       129 C~~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~g  208 (334)
T PRK14874        129 CSTIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDG  208 (334)
T ss_pred             HHHHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCC
Confidence            999999999999999999999999999999997632            33221  246678999999999997     67


Q ss_pred             hhhHH-------HHhc--cccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHh
Q 022491          218 AAKAV-------GKVL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE  270 (296)
Q Consensus       218 ~~~~~-------~~~~--pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~  270 (296)
                      |.+|+       .+++  |++  ++.++|+|||++|||+.++|++++++++.+|++++|+++
T Consensus       209 h~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~  268 (334)
T PRK14874        209 YTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEA  268 (334)
T ss_pred             CcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcC
Confidence            87773       3454  555  499999999999999999999999999999999999984

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-39  Score=299.20  Aligned_cols=251  Identities=28%  Similarity=0.347  Sum_probs=191.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccccc--ccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~--s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |+||||+|+|+||+.+++++.++|++||+++++.  ++++.++++++.  +.|+.++ ....       .+++..+.+..
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~-~~~~-------~~~~~~i~V~~   70 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADP-EREK-------AFEEAGIPVAG   70 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCc-cccc-------cccCCceEEcC
Confidence            3899999999999999999999999999999986  355555554421  2344443 2111       01222233322


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CC--CeEEcccChhccCCCCCeEEcCCcchh
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DA--PMFVVGVNEKEYKPELDIVSNASCTTN  160 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~--~~~v~gvn~~~l~~~~~iIs~p~C~~t  160 (296)
                        +++++   ..++|+||+|||.+.+.+.++.++++|+ ++|+++++. ++  ..+|||+|++.+. +.++|+||||+||
T Consensus        71 --~~~el---~~~vDVVIdaT~~~~~~e~a~~~~~aGk-~VI~~~~~~~~~~~~~~v~~vN~~~~~-~~~~v~~~sCtT~  143 (341)
T PRK04207         71 --TIEDL---LEKADIVVDATPGGVGAKNKELYEKAGV-KAIFQGGEKAEVAGVSFNALANYEEAL-GKDYVRVVSCNTT  143 (341)
T ss_pred             --ChhHh---hccCCEEEECCCchhhHHHHHHHHHCCC-EEEEcCCCCCCCCCCcEEeeECHHHhC-CCCcEEccChHHH
Confidence              34444   2479999999999999999999999995 455555543 33  3489999999887 4558999999999


Q ss_pred             hhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeecc----CChhhHHHHhccccCCceeEE
Q 022491          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGM  236 (296)
Q Consensus       161 al~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~----~g~~~~~~~~~pel~~~v~~~  236 (296)
                      |++|+|+||++.|||+++.+||+|++|+       +  .++  .|.+..|++|..    +.+.+++.+++|+++  ++++
T Consensus       144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~--~r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~  210 (341)
T PRK04207        144 GLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEV--KRGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTM  210 (341)
T ss_pred             HHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chh--hHHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEE
Confidence            9999999999999999999999999874       1  233  266778888752    233578899999997  9999


Q ss_pred             EEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC----cCCCcccccCCcee
Q 022491          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG----KLKGILGYTEEDVV  287 (296)
Q Consensus       237 ~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~----~~~~~~~~~~~~~v  287 (296)
                      |+|||+++||+.+++++++++++.||++++|+++.+-    +-.|+.. +++++.
T Consensus       211 avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~  264 (341)
T PRK04207        211 AVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIE  264 (341)
T ss_pred             EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhH
Confidence            9999999999999999999999999999999998763    2245555 544443

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=7.4e-39  Score=294.44  Aligned_cols=235  Identities=23%  Similarity=0.280  Sum_probs=184.4

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      |.+  ++||||+|+ |++|++++|+|.+  ||.+++..+++. .+.+.   .                      +.++++
T Consensus         1 ~~~--~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~-~saG~---~----------------------~~~~~~   52 (336)
T PRK08040          1 MSE--GWNIALLGATGAVGEALLELLAERQFPVGELYALASE-ESAGE---T----------------------LRFGGK   52 (336)
T ss_pred             CCC--CCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc-CcCCc---e----------------------EEECCc
Confidence            543  489999999 9999999999999  899999999876 33321   1                      222222


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccCh---hccCCCC
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNE---KEYKPEL  149 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~---~~l~~~~  149 (296)
                      .+.+.   ++++++|  .++|+||+|+|+..++++++++.++|+  +|||++++     +.|..++++|+   +.++ ++
T Consensus        53 ~~~v~---~~~~~~~--~~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~-~~  124 (336)
T PRK08040         53 SVTVQ---DAAEFDW--SQAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYR-NR  124 (336)
T ss_pred             ceEEE---eCchhhc--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhc-cC
Confidence            23332   3556666  489999999999999999999999999  89999986     48899999999   4444 57


Q ss_pred             CeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCC--------CCC---ccccCcccccceeeecc--
Q 022491          150 DIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDG--------PSM---KDWRGGRAASFNIIPSS--  215 (296)
Q Consensus       150 ~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~--------~~~---~~~~~~r~~~~ni~P~~--  215 (296)
                      ++|+||||++|+++++|+||++.++|++..+++++++||+|+ .++.        ..+   ....+.++.++|++|+.  
T Consensus       125 ~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~  204 (336)
T PRK08040        125 NIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPD  204 (336)
T ss_pred             CEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCC
Confidence            899999999999999999999999999999999999999984 2322        011   11345666899999994  


Q ss_pred             -------CCh-hhHHHHhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          216 -------TGA-AKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       216 -------~g~-~~~~~~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                             +.| ..|+.+++..-+-.+++||+||||+|||+.++|++++++++.++++++|++++
T Consensus       205 ~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~p  268 (336)
T PRK08040        205 SEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQGE  268 (336)
T ss_pred             cCCcchHhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence                   223 44555555211123899999999999999999999999999999999999843

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=100.00  E-value=2.8e-39  Score=299.25  Aligned_cols=231  Identities=24%  Similarity=0.327  Sum_probs=187.4

Q ss_pred             EEEEEec-CHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            8 KIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||+|+|+ |++|++|+|+|.+  ||.++++.+.+. .+.+.   .                      +.+.+..+.+ .+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-~~~g~---~----------------------~~~~~~~~~~-~~   53 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-RSAGR---K----------------------VTFKGKELEV-NE   53 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-ccCCC---e----------------------eeeCCeeEEE-Ee
Confidence            6899999 9999999999998  899999888665 33221   1                      1111222222 21


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCCeEEcCCc
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASC  157 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~iIs~p~C  157 (296)
                      .+.+  .|  .++|+||+|+|++.+++++++++++|+  +|||++++     +.|.++||+|++.+++  ..++||||||
T Consensus        54 ~~~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C  127 (339)
T TIGR01296        54 AKIE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNC  127 (339)
T ss_pred             CChH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCc
Confidence            1222  33  589999999999999999999999999  79999875     3789999999999874  2449999999


Q ss_pred             chhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc------------cCCCCCcc-------ccCcccccceeeecc---
Q 022491          158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSMKD-------WRGGRAASFNIIPSS---  215 (296)
Q Consensus       158 ~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~------------~d~~~~~~-------~~~~r~~~~ni~P~~---  215 (296)
                      |+||++|+|+||++.|+|++..++++|++||+|+.            .+.+....       .+++|++.+|+||+.   
T Consensus       128 ~~t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~  207 (339)
T TIGR01296       128 STIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDF  207 (339)
T ss_pred             HHHHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCc
Confidence            99999999999999999999999999999998631            23222111       677899999999995   


Q ss_pred             --CChhhHHHHhccccC-------CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          216 --TGAAKAVGKVLPALN-------GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       216 --~g~~~~~~~~~pel~-------~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                        ++|++|+.|+.+|++       .+++++|+|||++|||+.++|++++++++.+|++++|++++
T Consensus       208 ~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~  272 (339)
T TIGR01296       208 NDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAP  272 (339)
T ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence              589999888888876       25899999999999999999999999999999999999654

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-39  Score=292.42  Aligned_cols=239  Identities=17%  Similarity=0.170  Sum_probs=180.5

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ||+||+|+|+ ||+|.||+|+|.+||++|+..+.++ ...+.     .+.+.|+++. +.+      .+.        ++
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~-~~~g~-----~~~~~~p~l~-g~~------~l~--------~~   59 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR-ERAGK-----PVSDVHPNLR-GLV------DLP--------FQ   59 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech-hhcCC-----chHHhCcccc-ccc------ccc--------cc
Confidence            4699999999 9999999999999999998777765 32321     3467788877 321      121        12


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC--------------------C-CCeEEcccC-
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--------------------D-APMFVVGVN-  141 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~--------------------d-~~~~v~gvn-  141 (296)
                      ..+++++.  ..++|+||.|+|++++++.++.+++.|+  .|||+|+|                    + ...+|||++ 
T Consensus        60 ~~~~~~~~--~~~~DvvFlalPhg~s~~~v~~l~~~g~--~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpE  135 (349)
T COG0002          60 TIDPEKIE--LDECDVVFLALPHGVSAELVPELLEAGC--KVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPE  135 (349)
T ss_pred             cCChhhhh--cccCCEEEEecCchhHHHHHHHHHhCCC--eEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcc
Confidence            22444442  3579999999999999999999999999  58999886                    1 247999997 


Q ss_pred             --hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCC---cccccCCCCCccccCcccccceeeecc-
Q 022491          142 --EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA---TQKTVDGPSMKDWRGGRAASFNIIPSS-  215 (296)
Q Consensus       142 --~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg---~~~~~d~~~~~~~~~~r~~~~ni~P~~-  215 (296)
                        +++|+ ++++|||||||+||..++|+||.++.-|......+++++||   +|+-....+....     ...|+.||. 
T Consensus       136 l~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e-----~~~~~~~Y~~  209 (349)
T COG0002         136 LHREKIR-GAKLIANPGCYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPE-----VNDSLRPYGL  209 (349)
T ss_pred             cCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchh-----hccccccccc
Confidence              67787 89999999999999999999998864333333334555554   3332211111111     223556655 


Q ss_pred             --CChhhHHHHhccccC---CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCc
Q 022491          216 --TGAAKAVGKVLPALN---GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK  274 (296)
Q Consensus       216 --~g~~~~~~~~~pel~---~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~  274 (296)
                        |.|.+|+.+++..+.   ..+.|+++.+|+.||+++|+|+.+++.++.+|++++|+++|+++
T Consensus       210 ~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~e  273 (349)
T COG0002         210 TGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGE  273 (349)
T ss_pred             cccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCC
Confidence              778899999888776   34889999999999999999999999999999999999999873

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=7.7e-39  Score=295.04  Aligned_cols=236  Identities=15%  Similarity=0.205  Sum_probs=188.5

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHH--cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~--~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      |+++  +||+|+|+ |++|++++|+|.  +||.++++.+.+. .+.+.   .+.       |.               ++
T Consensus         1 m~~~--~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~---~l~-------~~---------------~~   52 (336)
T PRK05671          1 MSQP--LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGH---SVP-------FA---------------GK   52 (336)
T ss_pred             CCCC--CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCC---eec-------cC---------------Cc
Confidence            7754  79999999 999999999999  7899999999876 33321   111       11               11


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC----CCCeEEcccChhccCC--CCCe
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----DAPMFVVGVNEKEYKP--ELDI  151 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~----d~~~~v~gvn~~~l~~--~~~i  151 (296)
                      .+.+ .  +++..+|  .++|+||+|+|++.+.+++++++++|+  +|||+|++    +.|..++++|+++++.  .+++
T Consensus        53 ~l~~-~--~~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~i  125 (336)
T PRK05671         53 NLRV-R--EVDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFL  125 (336)
T ss_pred             ceEE-e--eCChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCE
Confidence            1112 2  2222234  489999999999999999999999999  79999987    5899999999999872  2789


Q ss_pred             EEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc-cCCC--------C---CccccCcccccceeeeccC---
Q 022491          152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VDGP--------S---MKDWRGGRAASFNIIPSST---  216 (296)
Q Consensus       152 Is~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~-~d~~--------~---~~~~~~~r~~~~ni~P~~~---  216 (296)
                      ||||||++|+++++|+||++.+++++..+++++++||+|+. ++..        .   .....+.++++||++|+..   
T Consensus       126 IAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~  205 (336)
T PRK05671        126 VSSPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPD  205 (336)
T ss_pred             EECCCcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccc
Confidence            99999999999999999998899999999999999999843 3320        0   0122466788899999874   


Q ss_pred             --ChhhHHHHhccccCC-------ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          217 --GAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       217 --g~~~~~~~~~pel~~-------~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                        +|++|+.||.||+..       ++++||+|||++|||+.++|++++++++.+|++++|++++
T Consensus       206 ~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~  269 (336)
T PRK05671        206 AQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP  269 (336)
T ss_pred             cCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC
Confidence              777777777777653       3889999999999999999999999999999999999544

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-38  Score=292.77  Aligned_cols=236  Identities=20%  Similarity=0.324  Sum_probs=186.2

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcE---EEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECC
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE   76 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~e---lv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~   76 (296)
                      ||.. .+||||+|+ |++|++++|+|.+||+++   +..+.+. .+.+.                         .+.+.+
T Consensus         1 ~~~~-~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~-~saGk-------------------------~~~~~~   53 (347)
T PRK06728          1 MSEK-GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSK-RSAGK-------------------------TVQFKG   53 (347)
T ss_pred             CCCC-CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECc-ccCCC-------------------------CeeeCC
Confidence            6653 489999999 999999999999999998   5566554 23321                         122333


Q ss_pred             EEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCCCCe
Q 022491           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPELDI  151 (296)
Q Consensus        77 ~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~~~i  151 (296)
                      +.+.+. ..+++.  |  .++|+||+|+|+..++++++++.++|+  +|||++++     +.|..++++|++.++...++
T Consensus        54 ~~l~v~-~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~i  126 (347)
T PRK06728         54 REIIIQ-EAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGI  126 (347)
T ss_pred             cceEEE-eCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCE
Confidence            333332 223433  3  489999999999999999999999999  89999987     58999999999999842379


Q ss_pred             EEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCC-----------CCCccccCc-------ccccceee
Q 022491          152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDG-----------PSMKDWRGG-------RAASFNII  212 (296)
Q Consensus       152 Is~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~-----------~~~~~~~~~-------r~~~~ni~  212 (296)
                      |+||||++|+++++|+||++.++|++..+++++++||+|+ .++.           .......++       +++++|++
T Consensus       127 IanPnC~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNvi  206 (347)
T PRK06728        127 IAVPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVL  206 (347)
T ss_pred             EECCCCHHHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceecccc
Confidence            9999999999999999999999999999999999999883 3332           111122345       88999999


Q ss_pred             ecc-----CChhhHHH-------Hhc--cccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491          213 PSS-----TGAAKAVG-------KVL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (296)
Q Consensus       213 P~~-----~g~~~~~~-------~~~--pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~  272 (296)
                      |+.     +|+++|+.       |++  |.+  +++.||+||||++||...++++++++++.++++++|+++..
T Consensus       207 P~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~g  278 (347)
T PRK06728        207 PQVDIFTDNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAPG  278 (347)
T ss_pred             CcCCccccCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCCC
Confidence            998     45555555       455  333  48999999999999999999999999999999999987643

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=2.4e-37  Score=286.01  Aligned_cols=235  Identities=15%  Similarity=0.168  Sum_probs=180.9

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcE---EEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~e---lv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      +||||+|+ |++|++++|++++||+++   ++...+. .+.+          ..+.|.               ++...++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~----------~~~~f~---------------g~~~~v~   55 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGG----------AAPSFG---------------GKEGTLQ   55 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCC----------cccccC---------------CCcceEE
Confidence            79999999 999999999999999887   6664433 2222          112232               2222333


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCC--C--CeEE
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--L--DIVS  153 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~--~--~iIs  153 (296)
                      ...+++.  |  .++|+||+|+|+.+++++++++.++|++.+|||++++     +.|.+++++|++.++..  .  ++|+
T Consensus        56 ~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa  131 (369)
T PRK06598         56 DAFDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV  131 (369)
T ss_pred             ecCChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence            3222332  3  4799999999999999999999999954489999987     59999999999988631  1  5899


Q ss_pred             cCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc-cC------------------------------------CC
Q 022491          154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VD------------------------------------GP  196 (296)
Q Consensus       154 ~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~-~d------------------------------------~~  196 (296)
                      ||||+||+++++|+||++.++|++..+++++++||+|+. ++                                    ..
T Consensus       132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (369)
T PRK06598        132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSG  211 (369)
T ss_pred             cCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccC
Confidence            999999999999999999989999999999999999842 11                                    00


Q ss_pred             CCccccCcccccceeeecc-----CChhhHHH-------Hhcccc--CCceeEEEEEeeeCceEEEEEEEEeecCCCHHH
Q 022491          197 SMKDWRGGRAASFNIIPSS-----TGAAKAVG-------KVLPAL--NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEE  262 (296)
Q Consensus       197 ~~~~~~~~r~~~~ni~P~~-----~g~~~~~~-------~~~pel--~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~e  262 (296)
                      ......+++++++|++|+.     +|+++|+.       |++...  .-+++.||+||||++||...++++++++++.++
T Consensus       212 ~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~  291 (369)
T PRK06598        212 DLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAE  291 (369)
T ss_pred             CCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHH
Confidence            0012345678999999998     46666655       455221  114899999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 022491          263 IKNAIKEES  271 (296)
Q Consensus       263 v~~~~~~~~  271 (296)
                      ++++|+++.
T Consensus       292 i~~~L~~~~  300 (369)
T PRK06598        292 IEEILAAHN  300 (369)
T ss_pred             HHHHHHhcC
Confidence            999999853

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-36  Score=272.06  Aligned_cols=234  Identities=19%  Similarity=0.223  Sum_probs=188.1

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||| |+ |.+|++++++|.++. |       +..+.    +++  ++.   +      .+.|+.+.|+|+++.+..  
T Consensus         4 ~~iAi-GATg~VG~~~l~~Leer~-f-------pv~~l----~l~--~s~---~------~s~gk~i~f~g~~~~V~~--   57 (322)
T PRK06901          4 LNIAI-AAEFELSEKLLEALEQSD-L-------EIEQI----SIV--EIE---P------FGEEQGIRFNNKAVEQIA--   57 (322)
T ss_pred             ceEEE-ecCcHHHHHHHHHHHhcC-C-------chhhe----eec--ccc---c------ccCCCEEEECCEEEEEEE--
Confidence            68999 99 999999999999875 2       11111    111  111   0      113446888898887763  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCCeEEcCCcc
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNASCT  158 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~iIs~p~C~  158 (296)
                       +++.+|  .++|++|+ +|...++++++.+.++|+  +|||+||.     |+|++||++|++.+..  ..+||+||+|+
T Consensus        58 -l~~~~f--~~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCs  131 (322)
T PRK06901         58 -PEEVEW--ADFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQ  131 (322)
T ss_pred             -CCccCc--ccCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHH
Confidence             445555  58999999 899999999999999999  99999986     5999999999998874  35799999999


Q ss_pred             hhhhHhHHHHHHhhcCeeEEEEEEEeecCCcc-cccCCC--------CCc-cccCcccccceeeeccC-ChhhHHHHhcc
Q 022491          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQ-KTVDGP--------SMK-DWRGGRAASFNIIPSST-GAAKAVGKVLP  227 (296)
Q Consensus       159 ~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~-~~~d~~--------~~~-~~~~~r~~~~ni~P~~~-g~~~~~~~~~p  227 (296)
                      |++++++|+||++.|||++..++|||++||+| ++++..        .+. .....++++||++|+.. +-..|.+|++|
T Consensus       132 Ti~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iAFNviP~ig~~m~~EtrKIl~  211 (322)
T PRK06901        132 VSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPANAQNLELQLQKIFP  211 (322)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeeeccccccCCccHHHHHHHHhC
Confidence            99999999999999999999999999999987 233321        010 11223789999999994 56688889998


Q ss_pred             ccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          228 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       228 el~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      ++ .+++.||+||||++||...++++++++++.++++++|+++.+-
T Consensus       212 ~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~gv  256 (322)
T PRK06901        212 QL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNNLL  256 (322)
T ss_pred             Cc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCCCc
Confidence            77 2489999999999999999999999999999999999987753

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=100.00  E-value=5.1e-36  Score=278.33  Aligned_cols=255  Identities=21%  Similarity=0.245  Sum_probs=189.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||||+|+ |++|++|+|+|.+||+++++++.+...+.+.     .+...++.+.++..   .+ .+    ..+ .+...
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~-----~~~~~~~~~~~~~~---~~-~~----~~~-~~~~~   66 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGK-----RYGEAVKWIEPGDM---PE-YV----RDL-PIVEP   66 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCC-----cchhhccccccCCC---cc-cc----cee-EEEeC
Confidence            48999999 9999999999999999999999654222221     11233332100000   00 00    111 12222


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC---------CCCe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP---------ELDI  151 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~---------~~~i  151 (296)
                      +++  .|  .++|+||+|+|++.+.++++.+.++|+  .|||++++     +.|.+++++|.+.|..         +.++
T Consensus        67 ~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~--~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~i  140 (341)
T TIGR00978        67 EPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGK--PVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFI  140 (341)
T ss_pred             CHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCC--EEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccE
Confidence            232  23  589999999999999999999999999  67888876     3788999999664431         3579


Q ss_pred             EEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccC----ChhhHHHHhcc
Q 022491          152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST----GAAKAVGKVLP  227 (296)
Q Consensus       152 Is~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~----g~~~~~~~~~p  227 (296)
                      |||||||+||++++|+||++.++|++..+++++++||+|+...     .   .+.+++|++|+..    .|.+|+.++++
T Consensus       141 VanPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~~~-----~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~  212 (341)
T TIGR00978       141 VTNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYPGV-----P---SMDILDNIIPHIGGEEEKIERETRKILG  212 (341)
T ss_pred             EeCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCCCC-----c---cchhhCCeEecCcHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999986421     1   2457889999984    35677888888


Q ss_pred             ccCC--------ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeee
Q 022491          228 ALNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVST  289 (296)
Q Consensus       228 el~~--------~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~  289 (296)
                      .+.+        +++|+|+|||++|||++++|++++++++.+|++++|+++|+.+....+.-+.+|+|-.
T Consensus       213 ~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~fv~~  282 (341)
T TIGR00978       213 KLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIV  282 (341)
T ss_pred             ccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCCcEEE
Confidence            7633        4899999999999999999999999999999999999999874433333344455433

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=100.00  E-value=2.6e-36  Score=279.32  Aligned_cols=233  Identities=16%  Similarity=0.200  Sum_probs=180.7

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            6 KIKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      ++||+|+|+ |++|++++|+|.+  ||.+++..+.+. ++.+.   .+                      .+++..+. +
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~-rsaGk---~~----------------------~~~~~~~~-v   59 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA-RSAGK---KV----------------------TFEGRDYT-V   59 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc-CCCCC---ee----------------------eecCceeE-E
Confidence            589999999 9999999999998  999999999766 34321   11                      11111121 2


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCC------CCe
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE------LDI  151 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~------~~i  151 (296)
                      ...+++  +|  .++|+||+|+|++.++++++++.++|+  +|||+|++     +.|..++++|++.++..      .++
T Consensus        60 ~~~~~~--~~--~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~i  133 (344)
T PLN02383         60 EELTED--SF--DGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGAL  133 (344)
T ss_pred             EeCCHH--HH--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcE
Confidence            222222  23  479999999999999999999999999  89999987     48899999999988731      239


Q ss_pred             EEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCCC-----------CccccCcccccceeeeccC---
Q 022491          152 VSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPS-----------MKDWRGGRAASFNIIPSST---  216 (296)
Q Consensus       152 Is~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~~-----------~~~~~~~r~~~~ni~P~~~---  216 (296)
                      |+|||||+|+++++|+||++.++|++..+++++++||+|+ .++..+           .....+++..++|++|+.+   
T Consensus       134 IanPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~  213 (344)
T PLN02383        134 IANPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQ  213 (344)
T ss_pred             EECCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccc
Confidence            9999999999999999999999999999999999999983 333221           1244577889999999875   


Q ss_pred             --ChhhHHH-------HhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          217 --GAAKAVG-------KVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       217 --g~~~~~~-------~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                        |+++++.       +++..-.-++++||+|||++|||+.++|++++++++.++++++|++++
T Consensus       214 ~~g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~p  277 (344)
T PLN02383        214 ENGYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASAP  277 (344)
T ss_pred             cCCCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence              2333322       333111124899999999999999999999999999999999999843

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=100.00  E-value=8e-37  Score=250.44  Aligned_cols=149  Identities=56%  Similarity=0.988  Sum_probs=136.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||||||||||||.++|++..+|++|+++||+...++++++|+++|||+|+.|+ +.+..+++ .|.++|+.|++++..+
T Consensus         1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d   78 (151)
T PF00044_consen    1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD   78 (151)
T ss_dssp             EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred             CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence            699999999999999999999999999999999558999999999999999998 77776666 5999999999999999


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCCCCCeEEcCCc
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASC  157 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~~~~iIs~p~C  157 (296)
                      |+++||.+.++|+|+||||.|.+++.++.|+++|+|+|++++++++  +|++|||+|++.+++..++||++||
T Consensus        79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC  151 (151)
T PF00044_consen   79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC  151 (151)
T ss_dssp             GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred             hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence            9999999999999999999999999999999999999999999986  8999999999999965599999999

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.5e-36  Score=270.52  Aligned_cols=233  Identities=23%  Similarity=0.301  Sum_probs=181.3

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |+||||+|+ |.+|++++++|.+ |+.++.+.+....++.+         ..|..|.               ++.+.+..
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG---------~~~~~f~---------------~~~~~v~~   56 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAG---------KKYIEFG---------------GKSIGVPE   56 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccC---------Ccccccc---------------CccccCcc
Confidence            379999999 9999999999998 88888666654424443         2223232               22221211


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCC-eEEcC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELD-IVSNA  155 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~-iIs~p  155 (296)
                       .-.+..+|  .++|+||+|.|...++++.+++.++|+  +|||++|.     |+|.+|+++|++.+..  ... ||+||
T Consensus        57 -~~~~~~~~--~~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp  131 (334)
T COG0136          57 -DAADEFVF--SDVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP  131 (334)
T ss_pred             -cccccccc--ccCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence             01334455  389999999999999999999999999  99999986     6999999999888763  234 99999


Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCCCC---------ccccCcccccceeeeccC-----Chhh
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSM---------KDWRGGRAASFNIIPSST-----GAAK  220 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~~~---------~~~~~~r~~~~ni~P~~~-----g~~~  220 (296)
                      +|+|..++++|+||+++++|++..++|+|++||+|. .++....         ...-.++.+++|++|++.     |+++
T Consensus       132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~  211 (334)
T COG0136         132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTK  211 (334)
T ss_pred             ChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCcccccccccccccccccCCccccCCccH
Confidence            999999999999999999999999999999999984 4432110         011126789999999995     4677


Q ss_pred             HHHH-------hccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHH
Q 022491          221 AVGK-------VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAI  267 (296)
Q Consensus       221 ~~~~-------~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~  267 (296)
                      |+.|       ++++-.-+++++|+|||+++||...++++++++++.+|+.+.+
T Consensus       212 EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~  265 (334)
T COG0136         212 EEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREEL  265 (334)
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHH
Confidence            7665       4443334699999999999999999999999999999999665

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=100.00  E-value=7.4e-36  Score=277.42  Aligned_cols=238  Identities=18%  Similarity=0.192  Sum_probs=175.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||||+|+ |++|++++|+|.+||.++++++.+...+.+.     .+.+.|+++. +.    .+  +        .+...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk-----~~~~~~~~l~-~~----~~--~--------~~~~~   60 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGK-----PVSEVHPHLR-GL----VD--L--------NLEPI   60 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCC-----ChHHhCcccc-cc----CC--c--------eeecC
Confidence            48999999 9999999999999999999987543233321     1233344333 10    00  1        11111


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC---CCC------------------eEEccc---C
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAP------------------MFVVGV---N  141 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~---d~~------------------~~v~gv---n  141 (296)
                      +++++   ..++|+||+|+|+..+++++++++++|+  .|||+|++   +.+                  .++||+   |
T Consensus        61 ~~~~~---~~~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n  135 (346)
T TIGR01850        61 DEEEI---AEDADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELH  135 (346)
T ss_pred             CHHHh---hcCCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccC
Confidence            23322   1379999999999999999999999998  89999876   111                  255554   6


Q ss_pred             hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee--EEEEEEEeecCCcccc-cCCCCCccccCcccccceeeeccCCh
Q 022491          142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSMKDWRGGRAASFNIIPSSTGA  218 (296)
Q Consensus       142 ~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~--~~~~~~v~a~sg~~~~-~d~~~~~~~~~~r~~~~ni~P~~~g~  218 (296)
                      +++++ ++++||||||++|+++++|+||++.+.++  +..+++++++||+|+. .+..+ ...+.+....+|++|  +.|
T Consensus       136 ~~~i~-~~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~-~~~~~~~~~~y~~~~--h~h  211 (346)
T TIGR01850       136 REEIK-GARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANH-FPEVNENLRPYKVTG--HRH  211 (346)
T ss_pred             HHHhC-CCcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCcccccc-chhhcCCeeeeccCC--cCc
Confidence            78887 68899999999999999999999988886  6789999999999864 33322 122222222334443  456


Q ss_pred             hhHHHHhccccCC---ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          219 AKAVGKVLPALNG---KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       219 ~~~~~~~~pel~~---~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      .+|+.+.+..+.+   +++|+|+|||++|||+.++|++++++++.+|++++|+++|++
T Consensus       212 ~~Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~  269 (346)
T TIGR01850       212 TPEIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYAD  269 (346)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCC
Confidence            7777776655422   489999999999999999999999999999999999999976

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-35  Score=276.33  Aligned_cols=238  Identities=23%  Similarity=0.268  Sum_probs=179.4

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE-ecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i-~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      ||+||+|+|+ |++|++++|+|.+||++|++.+ .+. .+.+.   .  +.+.++...  .     + .+.-....+.+ 
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~-~~~G~---~--~~~~~~~~~--~-----~-~~~~~~~~~~v-   66 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE-RSAGK---T--YGEAVRWQL--D-----G-PIPEEVADMEV-   66 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh-hhcCC---c--ccccccccc--c-----c-cccccccceEE-
Confidence            4589999999 9999999999999999999999 443 23321   1  122222100  0     0 00000011112 


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccC----------C
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK----------P  147 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~----------~  147 (296)
                      ...+++.+    .++|+||+|+|++.+.++++.+.++|+  .+||++++     +.|..++++|++.+.          +
T Consensus        67 ~~~~~~~~----~~~DvVf~a~p~~~s~~~~~~~~~~G~--~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~  140 (349)
T PRK08664         67 VSTDPEAV----DDVDIVFSALPSDVAGEVEEEFAKAGK--PVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGW  140 (349)
T ss_pred             EeCCHHHh----cCCCEEEEeCChhHHHHHHHHHHHCCC--EEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccC
Confidence            22244433    479999999999999999988889999  67888775     366788899865442          1


Q ss_pred             CCCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCC----hhhHHH
Q 022491          148 ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG----AAKAVG  223 (296)
Q Consensus       148 ~~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g----~~~~~~  223 (296)
                      +.++||||||||||++++|+||++ +|+++..++++|++||+|+...        ..+.+++|++|+..+    |.+|+.
T Consensus       141 ~~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~~~~--------~~~~~~~N~~p~~~~~ehrh~~Ei~  211 (349)
T PRK08664        141 DGFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGYPGV--------PSMDIVDNVIPYIGGEEEKIEKETL  211 (349)
T ss_pred             CceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCcccc--------hhhhhhcCcccccCchhhhhhHHHH
Confidence            357999999999999999999999 9999999999999999975321        134578899998843    456666


Q ss_pred             Hhcccc--------CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491          224 KVLPAL--------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (296)
Q Consensus       224 ~~~pel--------~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~  272 (296)
                      +++...        +.+++++|+|||++|||++++|++++++++.+|++++|+++|+
T Consensus       212 ~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~  268 (349)
T PRK08664        212 KILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG  268 (349)
T ss_pred             HHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence            665443        5569999999999999999999999999999999999999998

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=100.00  E-value=2.6e-35  Score=273.56  Aligned_cols=238  Identities=21%  Similarity=0.222  Sum_probs=180.2

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ||+||+|+|+ |++|++++++|.+||+++++++.++ .+.+.   .  +.+.|+++. +.    .+  +        .+.
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~---~--l~~~~~~~~-~~----~~--~--------~~~   59 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGK---P--LSDVHPHLR-GL----VD--L--------VLE   59 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCc---c--hHHhCcccc-cc----cC--c--------eee
Confidence            4589999999 9999999999999999999999875 33221   1  122333222 10    00  1        111


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC----C--------------------CCeEEcc
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----D--------------------APMFVVG  139 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~----d--------------------~~~~v~g  139 (296)
                        +.++..|  .++|+||.|+|+..+.+.+++++++|+  .|||+|++    +                    .|..+++
T Consensus        60 --~~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe  133 (343)
T PRK00436         60 --PLDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE  133 (343)
T ss_pred             --cCCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence              2222222  479999999999999999999999998  89999886    1                    2344455


Q ss_pred             cChhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee--EEEEEEEeecCCccc-ccCCCCCccccCcccccceeeeccC
Q 022491          140 VNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSST  216 (296)
Q Consensus       140 vn~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~--~~~~~~v~a~sg~~~-~~d~~~~~~~~~~r~~~~ni~P~~~  216 (296)
                      +|+++++ +.++||||||++|+++++|+||++.++|+  +..+++++++||+|+ .++..+ ...+.+.-.++|++|  +
T Consensus       134 ~~~~~i~-~~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~-~~~~~~~~~~y~~~~--h  209 (343)
T PRK00436        134 LNREEIK-GARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTL-FSEVNENLRPYKVGG--H  209 (343)
T ss_pred             cCHHHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCcccccc-chhhcCCeeecccCC--C
Confidence            5678887 57999999999999999999999988887  789999999999985 344332 122233333555555  4


Q ss_pred             ChhhHHHHhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       217 g~~~~~~~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      .|.+|+.+++..+.++++|+|+|||++|||+.++|++++++++.+|++++|+++|++
T Consensus       210 ~h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~  266 (343)
T PRK00436        210 RHTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYAD  266 (343)
T ss_pred             CCHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            467787777765533699999999999999999999999999999999999999976

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=100.00  E-value=2.3e-35  Score=271.92  Aligned_cols=234  Identities=15%  Similarity=0.192  Sum_probs=179.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcE---EEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~e---lv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      +||||+|+ |.+|++++++|.+|++|.   +..+.+. ++.+                         +.+.++++.+.+.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~-~s~g-------------------------~~~~f~~~~~~v~   54 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTS-QLGQ-------------------------AAPSFGGTTGTLQ   54 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEch-hhCC-------------------------CcCCCCCCcceEE
Confidence            47999999 999999999999887665   3333322 1221                         1233334433333


Q ss_pred             ecCCCCCC-CcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCCe--E
Q 022491           83 GFRNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDI--V  152 (296)
Q Consensus        83 ~~~d~~~i-~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~i--I  152 (296)
                         +.++. +|  .++|+||+|+|...++++++.+.++|+..+|||++|.     |+|++|+++|++.+..  ...+  |
T Consensus        55 ---~~~~~~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~i  129 (366)
T TIGR01745        55 ---DAFDIDAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTF  129 (366)
T ss_pred             ---cCcccccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeE
Confidence               23232 34  5899999999999999999999999943389999986     5999999999988763  2456  8


Q ss_pred             EcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-cc-----------C--------CC----------------
Q 022491          153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TV-----------D--------GP----------------  196 (296)
Q Consensus       153 s~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~-----------d--------~~----------------  196 (296)
                      +||+|+|+.++++|+||++.|+|++..++|||++||+|+ .+           .        ..                
T Consensus       130 anPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~  209 (366)
T TIGR01745       130 VGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRS  209 (366)
T ss_pred             ECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhcccccccccc
Confidence            999999999999999999999999999999999999982 11           1        00                


Q ss_pred             -CCccccCcccccceeeecc-----CChhhHHH-------Hhccc-cCCceeEEEEEeeeCceEEEEEEEEeecCCCHHH
Q 022491          197 -SMKDWRGGRAASFNIIPSS-----TGAAKAVG-------KVLPA-LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEE  262 (296)
Q Consensus       197 -~~~~~~~~r~~~~ni~P~~-----~g~~~~~~-------~~~pe-l~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~e  262 (296)
                       ......+++++++|++|+.     +|+++|+.       |++.. -.-+++.||+||||++||...++++++++++.++
T Consensus       210 ~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~  289 (366)
T TIGR01745       210 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLET  289 (366)
T ss_pred             CCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHH
Confidence             0013346788999999998     35656655       45532 1124899999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 022491          263 IKNAIKEES  271 (296)
Q Consensus       263 v~~~~~~~~  271 (296)
                      ++++|+++.
T Consensus       290 i~~~L~~~~  298 (366)
T TIGR01745       290 IEEIIRAHN  298 (366)
T ss_pred             HHHHHHhCC
Confidence            999999864

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=100.00  E-value=5.5e-35  Score=265.68  Aligned_cols=218  Identities=13%  Similarity=0.084  Sum_probs=165.7

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ||+||||+|+ ||+|++|+|+|.+||+++++++.+.  ...         .                 +           
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~--~~~---------~-----------------~-----------   41 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEA--KRK---------D-----------------A-----------   41 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecC--CCC---------c-----------------c-----------
Confidence            5799999999 9999999999999999999999754  110         0                 0           


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccCh---hccCCCCCeEEcC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNE---KEYKPELDIVSNA  155 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~---~~l~~~~~iIs~p  155 (296)
                       .+.++ .|  .++|+||+|+|++.++++++++.++|+  +|||+|++     +.|..++++|+   +.++ ++++||||
T Consensus        42 -~~~~~-~~--~~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~-~~~~IanP  114 (313)
T PRK11863         42 -AARRE-LL--NAADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIA-AAKRVANP  114 (313)
T ss_pred             -cCchh-hh--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhh-cCCeEEcC
Confidence             01112 23  479999999999999999999999999  79999987     24444445543   3454 68999999


Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCC---cccccCCCCCccccC-cccccceeeecc----CChhhHHHHhcc
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITA---TQKTVDGPSMKDWRG-GRAASFNIIPSS----TGAAKAVGKVLP  227 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg---~~~~~d~~~~~~~~~-~r~~~~ni~P~~----~g~~~~~~~~~p  227 (296)
                      |||+|+++++|+||.+...+++...++++++||   +|+.....    ... --....|++||.    |.|.+|+.+++.
T Consensus       115 gC~~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SGAG~~~~~~----~~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l~  190 (313)
T PRK11863        115 GCYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAA----YEAAPDGKAPAFRLYGLGLAHKHLPEMQAHAG  190 (313)
T ss_pred             CcHHHHHHHHHHHHHHcCCcccCceEEEEEccccccCCccchHH----HhhhhhhhccCeeeccCCcCCcchHHHHHHhc
Confidence            999999999999999975565544578888864   44321110    000 011345778877    446777777776


Q ss_pred             ccCCceeEEEEEeeeCceEEEEEEEEe---ecCCCHHHHHHHHHHhhcC
Q 022491          228 ALNGKLTGMSFRVPTVDVSVVDLTVRL---EKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       228 el~~~v~~~~~~VP~~~g~~~~~~~~l---~~~~~~~ev~~~~~~~~~~  273 (296)
                      .+ -++.|+++.+|++|||++|+|+++   +++++.+|++++|+++|++
T Consensus       191 ~~-~~~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~  238 (313)
T PRK11863        191 LA-RRPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAG  238 (313)
T ss_pred             cc-cCcEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCC
Confidence            54 347899999999999999999997   8889999999999999986

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=100.00  E-value=2.8e-34  Score=259.38  Aligned_cols=218  Identities=12%  Similarity=0.101  Sum_probs=164.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||+|+|+ ||+|.||+|+|.+||++|++.+.+. ...         +.                              .
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~-~~~---------~~------------------------------~   41 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPD-RRK---------DA------------------------------A   41 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecc-ccc---------Cc------------------------------C
Confidence            48999999 9999999999999999999999765 110         10                              0


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEccc---Ch---hccCCCCCeEEcCCc
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGV---NE---KEYKPELDIVSNASC  157 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gv---n~---~~l~~~~~iIs~p~C  157 (296)
                      +++++   ..++|+||+|+|++.++++++.+.++|+  +|||+|++-  .+.++||+   |+   ++++ ++++||||||
T Consensus        42 ~~~~~---~~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~-~a~lIAnPgC  115 (310)
T TIGR01851        42 ERAKL---LNAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIR-NSKRIANPGC  115 (310)
T ss_pred             CHhHh---hcCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhc-cCCEEECCCC
Confidence            12222   2478999999999999999999989999  799999871  33455555   42   3454 7899999999


Q ss_pred             chhhhHhHHHHHHhhcCeeEEEEEEEeecCC---cccc-cCCCCCccccCcccccceeeecc----CChhhHHHHhcccc
Q 022491          158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITA---TQKT-VDGPSMKDWRGGRAASFNIIPSS----TGAAKAVGKVLPAL  229 (296)
Q Consensus       158 ~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg---~~~~-~d~~~~~~~~~~r~~~~ni~P~~----~g~~~~~~~~~pel  229 (296)
                      |+|+++++|+||.+...+++...++++++||   +|+. .+..+. ..++. ....|+.||.    |.|.+|+++++..+
T Consensus       116 ~aTa~~LaL~PL~~~~li~~~~~~~~~a~SG~SGAGr~~~~~l~~-q~~~~-e~~~~~~~Y~~~~~HrH~pEi~q~l~~~  193 (310)
T TIGR01851       116 YPTGFIALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQ-GSADN-PSLQPFRIYGLALTHKHLPEMRVHSGLA  193 (310)
T ss_pred             HHHHHHHHHHHHHHcCCccccceEEEEeccccCccChhhhHHhhh-cccch-hhccCceeccCCCCCCcHHHHHHHhCCC
Confidence            9999999999999986665554688999987   4432 221110 00000 1223555554    56778888777544


Q ss_pred             CCceeEEEEEeeeCceEEEEEEEEe---ecCCCHHHHHHHHHHhhcC
Q 022491          230 NGKLTGMSFRVPTVDVSVVDLTVRL---EKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       230 ~~~v~~~~~~VP~~~g~~~~~~~~l---~~~~~~~ev~~~~~~~~~~  273 (296)
                       -++.|+++.+|++||+++|+|+++   ++.++.+|++++|+++|++
T Consensus       194 -~~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~  239 (310)
T TIGR01851       194 -LPPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQG  239 (310)
T ss_pred             -CCEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCC
Confidence             358999999999999999999999   8889999999999999986

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=100.00  E-value=1.1e-33  Score=264.84  Aligned_cols=235  Identities=14%  Similarity=0.128  Sum_probs=167.9

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |++||+|+|+ |++|++++|+|.+||+++|+.+.+. .+.+.   .  +...++++. +      +        ....+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~-~saG~---~--i~~~~~~l~-~------~--------~~~~~~   95 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD-RKAGQ---S--FGSVFPHLI-T------Q--------DLPNLV   95 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh-hhcCC---C--chhhCcccc-C------c--------ccccee
Confidence            4579999999 9999999999999999999999875 33321   1  233343332 1      0        011111


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC---C----------CCe--------EEcccC-
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---D----------APM--------FVVGVN-  141 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~---d----------~~~--------~v~gvn-  141 (296)
                        +.+..+|  .++|+||+|+|+..++++++.+ ++|+  +|||++++   +          .|.        .+||++ 
T Consensus        96 --~~~~~~~--~~~DvVf~Alp~~~s~~i~~~~-~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE  168 (381)
T PLN02968         96 --AVKDADF--SDVDAVFCCLPHGTTQEIIKAL-PKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTE  168 (381)
T ss_pred             --cCCHHHh--cCCCEEEEcCCHHHHHHHHHHH-hCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccch
Confidence              1222123  4799999999999999999985 7887  78999886   1          232        356653 


Q ss_pred             --hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCe--eEEEEEEEeecCCcccccCCCCCccccCcccccceeeecc--
Q 022491          142 --EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS--  215 (296)
Q Consensus       142 --~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi--~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~--  215 (296)
                        +++++ ++++|||||||+|+++++|+||++.++|  +...+++++++||+|+.....+....     ...|+.|+.  
T Consensus       169 ~~r~~i~-~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e-----~~~n~~~y~~~  242 (381)
T PLN02968        169 LQREEIK-SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTE-----IAEGIGAYGVT  242 (381)
T ss_pred             hCHHHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHH-----hcccceeeccC
Confidence              56666 6889999999999999999999999999  66889999999999854332211111     112333433  


Q ss_pred             -CChhhHHHHhcccc---CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          216 -TGAAKAVGKVLPAL---NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       216 -~g~~~~~~~~~pel---~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                       +.|..|+++.+-.+   .-+++|||++||++|||+.++|++++++++.+|++++|+++|++
T Consensus       243 ~h~h~pEie~~~~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~  304 (381)
T PLN02968        243 RHRHVPEIEQGLADAAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEG  304 (381)
T ss_pred             CCCCcchHHHHHHHHhCCCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCC
Confidence             33444443322111   22489999999999999999999999999999999999998765

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=100.00  E-value=5.1e-33  Score=228.20  Aligned_cols=148  Identities=54%  Similarity=0.921  Sum_probs=137.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||||+|+|++|+.++|.+.+++++++++++++ .++++++|+|+|||+|+.|+ +.+..+++ .+.++|+.+++++..+
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~   77 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD   77 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence            489999999999999999999999999999997 78999999999999999998 77766555 5999999999999999


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCc
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASC  157 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C  157 (296)
                      |.+++|.+.++|+|+||||.|.+++.++.|+++|+|+|++++++++ .+++|||+|++.+++..++|||+||
T Consensus        78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC  149 (149)
T smart00846       78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC  149 (149)
T ss_pred             hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence            9999999999999999999999999999999999999999999887 4689999999999855669999999

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=100.00  E-value=6e-33  Score=229.74  Aligned_cols=134  Identities=65%  Similarity=0.992  Sum_probs=128.7

Q ss_pred             hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      |+|++++|++.|||+++.+|++|+++..|+.+|+++ +++|+||.+++|++|..+++++++.+++|+|+++++++++|||
T Consensus         1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP   79 (157)
T PF02800_consen    1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP   79 (157)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred             CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence            689999999999999999999999999999999999 7999999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++.||+++++++++++++.|||+++|+++++++++|+++|+|+|+||+||+|++|
T Consensus        80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~  134 (157)
T PF02800_consen   80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRH  134 (157)
T ss_dssp             SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCS
T ss_pred             ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCce
Confidence            9999999999999999999999999999999999999999999999999999986

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=99.92  E-value=3.3e-25  Score=189.58  Aligned_cols=233  Identities=12%  Similarity=0.125  Sum_probs=163.3

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +|||.+|+ ||.|++++|++.+||.+|+..+.++ .-.++   -+  . .|++..           +.+.+     ++..
T Consensus        20 ~rv~LlGArGYTGknlv~Lin~HPylevthvssr-el~Gq---kl--~-~ytk~e-----------iqy~~-----lst~   76 (340)
T KOG4354|consen   20 IRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSR-ELAGQ---KL--E-VYTKLE-----------IQYAD-----LSTV   76 (340)
T ss_pred             ceEEEEeccccchhhHHHHhcCCCceEEEeeehh-hhcCC---cc--c-Ccchhh-----------eeecc-----cchh
Confidence            89999999 9999999999999999999999876 22221   11  1 343332           11100     0000


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CC--eEEcccC----hhccCCCCCeEEcCCc
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--AP--MFVVGVN----EKEYKPELDIVSNASC  157 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~--~~v~gvn----~~~l~~~~~iIs~p~C  157 (296)
                      |...+.- ...+|..+.++|..+-+.++...-...-|-++||.+++-  .|  .++||++    ++.|+ ++++||||||
T Consensus        77 D~~klee-~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNPGC  154 (340)
T KOG4354|consen   77 DAVKLEE-PHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANPGC  154 (340)
T ss_pred             hHHHhhc-CCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCCCc
Confidence            1111110 135788888899888877777666666677899998872  55  8999996    67787 8999999999


Q ss_pred             chhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeecc---CChhhHHHHhccccCCcee
Q 022491          158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNGKLT  234 (296)
Q Consensus       158 ~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~---~g~~~~~~~~~pel~~~v~  234 (296)
                      |+|...+.|-||.+..... ..+.-+-.+||+|.....+   +  .-.-++.|++|+.   +-|.+|+.+   .++..+.
T Consensus       155 YaTgsQl~l~Pllk~i~g~-p~ifgvSGySGAGtkpspk---N--d~~~l~nnlipY~ltdHiHerEIs~---r~k~~Va  225 (340)
T KOG4354|consen  155 YATGSQLPLVPLLKAILGK-PEIFGVSGYSGAGTKPSPK---N--DYSELANNLIPYGLTDHIHEREISQ---RSKVTVA  225 (340)
T ss_pred             ccccCcccchHHHHHhcCC-cceeeeccccCCCCCCCCc---c--CHHHHhcCCccccccccchhHhHHH---hhCCcee
Confidence            9999888888877643222 1233334455554322111   1  2233667899988   445566555   2344689


Q ss_pred             EEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       235 ~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      |+++..|.++|+..|+++.+++.++.+|++++|+..|++
T Consensus       226 F~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~Yed  264 (340)
T KOG4354|consen  226 FTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYED  264 (340)
T ss_pred             echhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999987

>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=99.85  E-value=2.9e-21  Score=166.58  Aligned_cols=238  Identities=18%  Similarity=0.230  Sum_probs=171.0

Q ss_pred             EEE-EEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            8 KIG-INGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         8 ~vg-I~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |+| |+|+ |.+|++++-+|..||+++|.-+....++++.     +|. .-++|++.....+.       -.++.+ .+.
T Consensus         5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK-----~ya-~a~~wkqt~~lp~~-------~~e~~V-~ec   70 (361)
T KOG4777|consen    5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGK-----RYA-FAGNWKQTDLLPES-------AHEYTV-EEC   70 (361)
T ss_pred             cccceeeccchhHHHHHHHhccCCcceeeeecccccccCC-----ceE-ecccchhcccccch-------hhhhhH-hhc
Confidence            565 9999 9999999999999999999888544355542     221 12445411100000       012222 234


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC-----------CC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP-----------EL  149 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~-----------~~  149 (296)
                      +++.+    .++|+||+.++...+.+.-+.+.++|.  +|+|++..     ++|++|+.+|+|+++-           ..
T Consensus        71 ~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G  144 (361)
T KOG4777|consen   71 TADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKG  144 (361)
T ss_pred             Chhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCc
Confidence            56655    599999999999999999999999999  99998765     4999999999988751           12


Q ss_pred             CeEEcCCcchhhhHhHHHHHHhhcC-eeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChh----hHHHH
Q 022491          150 DIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA----KAVGK  224 (296)
Q Consensus       150 ~iIs~p~C~~tal~~~l~~L~~~~g-i~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~----~~~~~  224 (296)
                      -||+|++|.|..+...|+||++.|| |.+-.++|+|++||+|-.--.       -+-....|++|...|..    .+..+
T Consensus       145 ~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~apgv-------~~vdildnilp~iggee~k~ewet~k  217 (361)
T KOG4777|consen  145 AIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAAPGV-------ELVDILDNILPGIGGEENKFEWETAK  217 (361)
T ss_pred             eEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcCCCc-------hHHHHHHhhcCCCCccchhhhHHHHH
Confidence            4999999999999999999999996 666678899999998632110       11235568888886532    23334


Q ss_pred             hccccCC-----------ceeEEEEEeeeCceEEEEEEEEeecC--CCHHHHHHHHHHhhc
Q 022491          225 VLPALNG-----------KLTGMSFRVPTVDVSVVDLTVRLEKE--ATYEEIKNAIKEESE  272 (296)
Q Consensus       225 ~~pel~~-----------~v~~~~~~VP~~~g~~~~~~~~l~~~--~~~~ev~~~~~~~~~  272 (296)
                      ++-..+.           .++..|-|||+..||+..+.++++-+  .+.+++..++.++.-
T Consensus       218 iL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~  278 (361)
T KOG4777|consen  218 ILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVL  278 (361)
T ss_pred             hhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccC
Confidence            4433221           25567899999999999999999743  378999999887664

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=99.69  E-value=4.8e-16  Score=140.63  Aligned_cols=154  Identities=18%  Similarity=0.115  Sum_probs=110.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|.|.+|..++..+.+.|+++++++.++..+..-    ++....++. +           ..+++.+. +    
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~g----la~A~~~Gi-~-----------~~~~~ie~-L----   62 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDG----LARARRLGV-A-----------TSAEGIDG-L----   62 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHH----HHHHHHcCC-C-----------cccCCHHH-H----
Confidence            4899999999999999999988999999999987333111    111111110 0           00000000 0    


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCC--CCCeEEcCCcchhhh
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCL  162 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~--~~~iIs~p~C~~tal  162 (296)
                       .+..+|  .++|+||+|||...+.++++.++++|+  .|||.++. ..|++||++|.+++..  +.++|+||+|.++.+
T Consensus        63 -L~~~~~--~dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~  137 (302)
T PRK08300         63 -LAMPEF--DDIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPI  137 (302)
T ss_pred             -HhCcCC--CCCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHH
Confidence             111123  479999999999999999999999999  88888766 5999999999776653  568999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecC
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSIT  187 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~s  187 (296)
                      +.+|+|+++ .++.+.. .|+.+.|
T Consensus       138 v~Al~~v~~-~~~~eIv-at~~s~s  160 (302)
T PRK08300        138 VAAVSRVAP-VHYAEIV-ASIASKS  160 (302)
T ss_pred             HHHhcccCc-Cceeeee-eeehhhc
Confidence            999999654 3444443 6666665

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.65  E-value=1.4e-16  Score=126.59  Aligned_cols=113  Identities=28%  Similarity=0.317  Sum_probs=82.7

Q ss_pred             EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      ||||+|+ |++|++++|+|.+||+++++.+.++..+.+.     ++...++.+. +.      .++       .+. ..+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~-----~~~~~~~~~~-~~------~~~-------~~~-~~~   60 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGK-----PLSEVFPHPK-GF------EDL-------SVE-DAD   60 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTS-----BHHHTTGGGT-TT------EEE-------BEE-ETS
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCC-----eeehhccccc-cc------cce-------eEe-ecc
Confidence            7999998 9999999999999999999999987442321     2344444333 10      012       121 123


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK  146 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~  146 (296)
                      .+.+    .++|+||+|+|+..+++++++++++|+  +|||++++     +.|..++++|+++++
T Consensus        61 ~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i~  119 (121)
T PF01118_consen   61 PEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQIK  119 (121)
T ss_dssp             GHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred             hhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence            3333    589999999999999999999999999  89999887     367778888888875

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.52  E-value=1.1e-13  Score=124.96  Aligned_cols=152  Identities=19%  Similarity=0.190  Sum_probs=110.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|.|++|+.++..+.+.++++++++.++..+...+    .....++     .       ..        .+.  
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~l----a~A~~~G-----i-------~~--------~~~--   54 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGL----ARARELG-----V-------KT--------SAE--   54 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHH----HHHHHCC-----C-------CE--------EEC--
Confidence            37999999999999998888888899999999873321111    1111111     0       00        010  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCC--CCCeEEcCCcchhhh
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP--ELDIVSNASCTTNCL  162 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~--~~~iIs~p~C~~tal  162 (296)
                      +.+.+ ....++|+||+|||...+.+++..++++|+  .|+|..+. ..|.+++.+|.++...  +.++|++|+|.++.+
T Consensus        55 ~~e~l-l~~~dIDaV~iaTp~~~H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~  131 (285)
T TIGR03215        55 GVDGL-LANPDIDIVFDATSAKAHARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI  131 (285)
T ss_pred             CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence            22222 112479999999999999999999999998  77776554 5899999999666543  578999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecCC
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSITA  188 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~sg  188 (296)
                      ..+++++++...+  ..+.++++.|+
T Consensus       132 ~~al~r~~d~~~~--~iv~ti~s~S~  155 (285)
T TIGR03215       132 VAAISRVAPVHYA--EIVASIASRSA  155 (285)
T ss_pred             HHHHHHhhccccE--EEEEEEEeecc
Confidence            9999999886644  45567888774

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.27  E-value=2.1e-11  Score=103.80  Aligned_cols=105  Identities=18%  Similarity=0.264  Sum_probs=73.5

Q ss_pred             HHHHHhh-cCeeEEEEEEEeecCCcccc-cCC-----------CCCccccCcccccceeeeccCC----hhhHHH---H-
Q 022491          166 AKVIHDK-FGIVEGLMTTVHSITATQKT-VDG-----------PSMKDWRGGRAASFNIIPSSTG----AAKAVG---K-  224 (296)
Q Consensus       166 l~~L~~~-~gi~~~~~~~v~a~sg~~~~-~d~-----------~~~~~~~~~r~~~~ni~P~~~g----~~~~~~---~-  224 (296)
                      |+||+++ +++++..+++++++||+|+. ++.           ............++|++|+..+    |.++..   + 
T Consensus         1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~   80 (184)
T PF02774_consen    1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM   80 (184)
T ss_dssp             HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred             CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence            6899997 99999999999999999863 110           0001223456788999999843    322322   1 


Q ss_pred             ------hccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          225 ------VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       225 ------~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                            ++... ..++++|+|||++|||+.++|++++  .+..++.++++.+|+.
T Consensus        81 ~~~~~~~l~~~-~~v~~t~~~vPv~rG~~~ti~v~~~--~~~~~~~~~~~~~~~~  132 (184)
T PF02774_consen   81 IAETRKILGFP-PRVSFTCVRVPVFRGHLATIYVELK--ETPVDVEEIYEAFYKG  132 (184)
T ss_dssp             HHHHHHHCTET-TEEEEEEEEESSSSEEEEEEEEEES--SSHHHHHHHHHHHHTS
T ss_pred             hccccceeecc-ccccccEEEEeeeeeEceeEEEEec--CCHHHHHHHHHHHhCC
Confidence                  22211 2688999999999999999999996  3456666666666655

It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=99.16  E-value=2.8e-10  Score=104.27  Aligned_cols=209  Identities=20%  Similarity=0.204  Sum_probs=128.0

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|+|.+|+.+++.+.++|++||+++.++ .+.+.+.      ...+                       ++...
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr-~~~~~~~------~~~~-----------------------v~~~~   52 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSR-RGAETLD------TETP-----------------------VYAVA   52 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcC-CcHHHHh------hcCC-----------------------ccccC
Confidence            4899999999999999999999999999999987 3322111      0000                       11111


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccC--hhccCC---CCCeEEcCCcchh
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVN--EKEYKP---ELDIVSNASCTTN  160 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn--~~~l~~---~~~iIs~p~C~~t  160 (296)
                      +.+++   ..++|+|+.|+|...+.+.+.+++++|.  -|||...   |.  ..++  .+.++.   ...-+   ++..+
T Consensus        53 d~~e~---l~~iDVViIctPs~th~~~~~~~L~aG~--NVV~s~~---~h--~~~p~~~~~ld~AAk~~g~v---svi~~  119 (324)
T TIGR01921        53 DDEKH---LDDVDVLILCMGSATDIPEQAPYFAQFA--NTVDSFD---NH--RDIPRHRQVMDAAAKAAGNV---SVIST  119 (324)
T ss_pred             CHHHh---ccCCCEEEEcCCCccCHHHHHHHHHcCC--CEEECCC---cc--cCCHHHHHHHHHHHHHcCCE---EEEEC
Confidence            22222   2579999999999999999999999998  6676521   10  0111  122221   11112   22336


Q ss_pred             hhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcc---cccceeeeccCChhhHHHHhc-cccCCceeEE
Q 022491          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGR---AASFNIIPSSTGAAKAVGKVL-PALNGKLTGM  236 (296)
Q Consensus       161 al~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r---~~~~ni~P~~~g~~~~~~~~~-pel~~~v~~~  236 (296)
                      .+-|.+..|.+.++  +.++..-..||.+|+.++..+....++-.   .+.+.-||    ...++..++ .|.. .++  
T Consensus       120 GwDPG~~si~r~~~--ea~lp~g~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~tip----~~dal~~v~~Ge~~-~l~--  190 (324)
T TIGR01921       120 GWDPGMFSINRVYG--EAVLPKGQTYTFWGPGLSQGHSDAVRRIDGVKKAVQYTLP----SEDALEKARRGEAP-ELT--  190 (324)
T ss_pred             CCCcChHHHHHHHH--hccCCCCcceeccCCCcCchhhhhhcccCCcccceEEEEe----hHHHHHHHHcCCcc-ccc--
Confidence            68888888877643  44445556677778777755422222222   23455566    234555554 2221 122  


Q ss_pred             EEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       237 ~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                           ....|...+|+.++...+.++|++..++.+
T Consensus       191 -----~~~~h~r~~~vv~e~g~~~~~v~~~i~~~p  220 (324)
T TIGR01921       191 -----GKQTHKRQCFVVLKDGADHERVENEIRTMP  220 (324)
T ss_pred             -----cccceeeeEEEEecCCCCHHHHHHHHhhCc
Confidence                 223366788888988889999999988643

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.96  E-value=3.8e-09  Score=83.76  Aligned_cols=112  Identities=24%  Similarity=0.238  Sum_probs=73.8

Q ss_pred             EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |+||+|+ |++|+.+++.|.++|+++++++.++..+.+.   .  ....++++. .         .        .+...+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~---~--~~~~~~~~~-~---------~--------~~~~~~   57 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGK---R--VSEAGPHLK-G---------E--------VVLELE   57 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCc---C--HHHHCcccc-c---------c--------cccccc
Confidence            6899998 9999999999999999999999654222221   1  112232211 0         0        001112


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeCCCC-----CCCeEEcccChhccC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK  146 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~  146 (296)
                      .+  +|...++|+||.|+|...+.+.++.+   ++.|+  ++||.++.     +.+..++++|+++++
T Consensus        58 ~~--~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~~  121 (122)
T smart00859       58 PE--DFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAIK  121 (122)
T ss_pred             cC--ChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHhc
Confidence            22  23335899999999999888854433   35676  99999876     367778888877654

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.72  E-value=5e-08  Score=88.04  Aligned_cols=92  Identities=20%  Similarity=0.204  Sum_probs=65.8

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i   79 (296)
                      ||.+.++||||+|+|+||+.+++.|.+ .++++++++.++  +.+.. ..  +...++.-                    
T Consensus         1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr--~~~~a-~~--~a~~~g~~--------------------   55 (271)
T PRK13302          1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR--DPQRH-AD--FIWGLRRP--------------------   55 (271)
T ss_pred             CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC--CHHHH-HH--HHHhcCCC--------------------
Confidence            777667999999999999999999987 589999999987  33211 10  11111100                    


Q ss_pred             EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                      ..+  .+++++   ..++|+|++|+|...+.++..+++++|..
T Consensus        56 ~~~--~~~eel---l~~~D~Vvi~tp~~~h~e~~~~aL~aGk~   93 (271)
T PRK13302         56 PPV--VPLDQL---ATHADIVVEAAPASVLRAIVEPVLAAGKK   93 (271)
T ss_pred             ccc--CCHHHH---hcCCCEEEECCCcHHHHHHHHHHHHcCCc
Confidence            011  134555   24689999999999999999999999974

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.61  E-value=1.1e-07  Score=85.49  Aligned_cols=88  Identities=25%  Similarity=0.309  Sum_probs=63.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||||+|+|.+|+.+++.+.++|+++++++..+....+.....      +   .       .         .+.++.  +
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~------~---~-------~---------~~~~~~--d   54 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRA------L---G-------E---------AVRVVS--S   54 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhh------h---c-------c---------CCeeeC--C
Confidence            7999999999999999999999999999998552222110000      0   0       0         011222  3


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeE
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV  124 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~v  124 (296)
                      .+++   ..++|+|++|+|+..+.+++.+++++|+..+
T Consensus        55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vv   89 (265)
T PRK13303         55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGIDCA   89 (265)
T ss_pred             HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEE
Confidence            4444   2579999999999999999999999998533

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.46  E-value=5e-07  Score=80.37  Aligned_cols=93  Identities=23%  Similarity=0.257  Sum_probs=66.6

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |++||||+|+|.||+.+++.|...  +.+++++|+++  +.+.. ..+         . +.               .++.
T Consensus         1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~--~~~~~-~~~---------~-~~---------------~~~~   52 (267)
T PRK13301          1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN--AADLP-PAL---------A-GR---------------VALL   52 (267)
T ss_pred             CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC--CHHHH-HHh---------h-cc---------------Cccc
Confidence            568999999999999999998864  45999999876  22110 100         0 00               0111


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .  +++++-  ...+|+|+||.++...+++.++.|++|+..+++|-.
T Consensus        53 ~--~l~~ll--~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvG   95 (267)
T PRK13301         53 D--GLPGLL--AWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAG   95 (267)
T ss_pred             C--CHHHHh--hcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChh
Confidence            1  445531  247999999999999999999999999987777643

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.44  E-value=6.6e-07  Score=80.57  Aligned_cols=95  Identities=23%  Similarity=0.312  Sum_probs=64.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||+|+|+ |++|+.+++.+.++|+++++++.++ .+.....+.+  ....+...                ..+.++.  
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~-~~~~~~~~~~--~~~~~~~~----------------~gv~~~~--   60 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER-HGSSLQGTDA--GELAGIGK----------------VGVPVTD--   60 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCccccCCCH--HHhcCcCc----------------CCceeeC--
Confidence            79999996 9999999999999999999999985 2221000000  00000000                0122222  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      |++++   ..++|+|++||+...+.+.+..+++.|.. +|+
T Consensus        61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi   97 (266)
T TIGR00036        61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV   97 (266)
T ss_pred             CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence            44444   24689999999999999999999999975 444

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.43  E-value=4e-07  Score=71.46  Aligned_cols=93  Identities=31%  Similarity=0.492  Sum_probs=66.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC-CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||||+|+|.+|+..++.+.++ |++++++|.++  +.+.. ..  ....++              +       +.+.  
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~--~~~~~-~~--~~~~~~--------------~-------~~~~--   52 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP--DPERA-EA--FAEKYG--------------I-------PVYT--   52 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS--SHHHH-HH--HHHHTT--------------S-------EEES--
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC--CHHHH-HH--HHHHhc--------------c-------cchh--
Confidence            6899999999999999888877 89999999988  33211 10  011110              1       1222  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      +.+++ +...++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP   94 (120)
T PF01408_consen   53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKP   94 (120)
T ss_dssp             SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESS
T ss_pred             HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcC
Confidence            34444 223579999999999999999999999998 4667544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.38  E-value=1.5e-06  Score=73.67  Aligned_cols=139  Identities=21%  Similarity=0.278  Sum_probs=88.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhh--cccccccCCCCcCcceeeeCCceeEECCE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTY--MFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~--~l~~~s~~~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      |++  |.||+|+|-|.||..|+-.+++|. .+|..+........+-+++  .|....+|           +|  +.  + 
T Consensus         1 m~s--k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~-----------eg--v~--~-   62 (310)
T COG4569           1 MSS--KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTH-----------EG--VI--G-   62 (310)
T ss_pred             CCC--cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchh-----------hH--HH--H-
Confidence            554  389999999999999988888774 4666555533111111221  11111221           11  00  0 


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccC-hhccCCCCCeEEcC
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVN-EKEYKPELDIVSNA  155 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn-~~~l~~~~~iIs~p  155 (296)
                         ..  .-| +    ..++|+||++|..+.+.+.++++.++|.  ..||+..+. -|-+|+-+| ++.++  ++-|+--
T Consensus        63 ---ll--~~p-~----~~di~lvfdatsa~~h~~~a~~~ae~gi--~~idltpaaigp~vvp~~n~~eh~~--a~nvnmv  128 (310)
T COG4569          63 ---LL--NMP-E----FADIDLVFDATSAGAHVKNAAALAEAGI--RLIDLTPAAIGPYVVPVVNLEEHVD--ALNVNMV  128 (310)
T ss_pred             ---HH--hCC-C----CCCcceEEeccccchhhcchHhHHhcCC--ceeecchhccCCeeccccchHHhcC--CCCcceE
Confidence               00  012 2    2578999999999999999999999999  577765543 788899999 44454  3334444


Q ss_pred             CcchhhhHhHHHHHHh
Q 022491          156 SCTTNCLAPLAKVIHD  171 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~  171 (296)
                      -|...+..|.++...+
T Consensus       129 tcggqatipiv~avsr  144 (310)
T COG4569         129 TCGGQATIPIVAAVSR  144 (310)
T ss_pred             eecCcccchhhhhhhh
Confidence            6888888888877644

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.38  E-value=3.7e-07  Score=72.71  Aligned_cols=92  Identities=29%  Similarity=0.339  Sum_probs=58.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |||+|+|+ |++|+.+++.+.++++++|+++.++..+. .    .  ....+.+. +.           ....++++  .
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~-~----~--g~d~g~~~-~~-----------~~~~~~v~--~   59 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA-K----V--GKDVGELA-GI-----------GPLGVPVT--D   59 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST-T----T--TSBCHHHC-TS-----------ST-SSBEB--S
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc-c----c--cchhhhhh-Cc-----------CCcccccc--h
Confidence            68999999 99999999999999999999999873321 0    0  00000000 00           00111122  2


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                      +.+++   ...+|+++|+|-.....+.++.+++.|..
T Consensus        60 ~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~   93 (124)
T PF01113_consen   60 DLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVP   93 (124)
T ss_dssp             -HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-E
T ss_pred             hHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCC
Confidence            44444   23599999999877778888888998884

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.33  E-value=1.8e-06  Score=74.42  Aligned_cols=93  Identities=26%  Similarity=0.368  Sum_probs=67.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++|||+|+|.||+.+++++...+ ++|++++.|+..+-  .-.+   ..-.   .               +..  +   .
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~---~~~~---~---------------~~~--~---s   52 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKEL---EASV---G---------------RRC--V---S   52 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHH---Hhhc---C---------------CCc--c---c
Confidence            47999999999999999999764 69999999873221  1111   1100   0               000  0   1


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +.+++   ..++|++++|.++...+++++++|++|+..+|+|-++
T Consensus        53 ~ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA   94 (255)
T COG1712          53 DIDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA   94 (255)
T ss_pred             cHHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence            34444   3689999999999999999999999999888887543

>PRK11579 putative oxidoreductase; Provisional

Probab=98.32  E-value=1.8e-06  Score=80.61  Aligned_cols=92  Identities=25%  Similarity=0.382  Sum_probs=65.7

Q ss_pred             eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|+. +++.+...|++++++|.++  +.+..+      ..++    +                .+++. 
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~--~~~~~~------~~~~----~----------------~~~~~-   54 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSS--DATKVK------ADWP----T----------------VTVVS-   54 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECC--CHHHHH------hhCC----C----------------CceeC-
Confidence            389999999999984 6788888999999999987  332211      1111    0                01121 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       |.+++ ..+.++|+|+.|||+..+.+.+.+++++|. .|++.-|
T Consensus        55 -~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP   96 (346)
T PRK11579         55 -EPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP   96 (346)
T ss_pred             -CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence             34444 223579999999999999999999999995 4666544

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.30  E-value=2.1e-06  Score=76.98  Aligned_cols=87  Identities=28%  Similarity=0.329  Sum_probs=62.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||+|+|+ |++|+.+++.+.++|+++++++.++..+..        ... ..+.                  +..+  .
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~--------~~~-~~~~------------------i~~~--~   52 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL--------VGQ-GALG------------------VAIT--D   52 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------ccc-CCCC------------------cccc--C
Confidence            79999999 999999999999999999999998622210        000 1000                  1111  1


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      |.+++   ..++|+|+++|+.....+.+..++++|+. +++
T Consensus        53 dl~~l---l~~~DvVid~t~p~~~~~~~~~al~~G~~-vvi   89 (257)
T PRK00048         53 DLEAV---LADADVLIDFTTPEATLENLEFALEHGKP-LVI   89 (257)
T ss_pred             CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence            34443   13789999999988889999999999985 444

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=98.29  E-value=5.2e-06  Score=73.46  Aligned_cols=98  Identities=28%  Similarity=0.310  Sum_probs=65.6

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |||||+|+|+ |++|+++++++.+.|+++|++..++..+.     ..  .+-.+.+. +           .+...+++..
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~-----~~--g~d~ge~~-g-----------~~~~gv~v~~   61 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSL-----SL--GSDAGELA-G-----------LGLLGVPVTD   61 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcc-----cc--ccchhhhc-c-----------ccccCceeec
Confidence            3589999999 99999999999999999999998873322     11  01011111 0           0011222322


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                        ++...   ..+.|+++|-|-...+.+.++.+++.|.+.||-
T Consensus        62 --~~~~~---~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIG   99 (266)
T COG0289          62 --DLLLV---KADADVLIDFTTPEATLENLEFALEHGKPLVIG   99 (266)
T ss_pred             --chhhc---ccCCCEEEECCCchhhHHHHHHHHHcCCCeEEE
Confidence              22222   468999999988888999999999999764433

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.24  E-value=3.4e-06  Score=75.97  Aligned_cols=89  Identities=25%  Similarity=0.383  Sum_probs=62.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||||+|+|.+|+.+++.+.+.+ +++++++.++  +.+....+   .+.++                     ...+.  
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~--~~~~a~~~---a~~~~---------------------~~~~~--   53 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDR--NLEKAENL---ASKTG---------------------AKACL--   53 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECC--CHHHHHHH---HHhcC---------------------CeeEC--
Confidence            69999999999999999998864 8999999987  33211111   11000                     01121  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +.+++.   .++|+|++|++.....++++.++++|...++.
T Consensus        54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~   91 (265)
T PRK13304         54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIM   91 (265)
T ss_pred             CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEE
Confidence            344442   47999999999999999999999999753333

>PRK06270 homoserine dehydrogenase; Provisional

Probab=98.20  E-value=4.4e-06  Score=77.92  Aligned_cols=105  Identities=25%  Similarity=0.318  Sum_probs=61.5

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCC---------CcEEEEEecCCCCh----h-hhhhcccccccCCCCcCcceeeeCCc
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFIST----D-YMTYMFKYDSVHGQWKHNELKVKDEK   70 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p---------~~elv~i~~~~~~~----~-~~a~~l~~~s~~~~~~~~~v~~~~~~   70 (296)
                      |++||||+|+|.+|+.+++.|.+++         ++++++|.++....    + +......+...++.+.          
T Consensus         1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~----------   70 (341)
T PRK06270          1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLA----------   70 (341)
T ss_pred             CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcc----------
Confidence            5699999999999999999998764         79999999852110    0 0000000001011000          


Q ss_pred             eeEECCEEEEEEecCCCCCCCcccCCCcEEEEccCCccC-----HHHHHHHHHCCCCeEEeeC
Q 022491           71 TLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD-----KDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        71 ~l~~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~-----~~~~~~~l~~G~k~vvid~  128 (296)
                        .+.+    .....+++++ ....++|+|++|||+..+     .+++..++++|+  -||.+
T Consensus        71 --~~~~----~~~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVta  124 (341)
T PRK06270         71 --DYPE----GGGEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTS  124 (341)
T ss_pred             --cCcc----ccccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcC
Confidence              0000    0000133332 223579999999997554     678889999998  55543

>PRK10206 putative oxidoreductase; Provisional

Probab=98.04  E-value=1e-05  Score=75.61  Aligned_cols=94  Identities=16%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             eeEEEEEecCHHHH-HHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGR-LVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~-~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ++||||+|+|.+++ .+++.+.. .+++++++|.|+..+...      ....|+.                    ++++.
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~------~~~~~~~--------------------~~~~~   54 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEE------QAPIYSH--------------------IHFTS   54 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHH------HHHhcCC--------------------CcccC
Confidence            38999999999774 46776655 468999999987322111      1111110                    01111


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        |.+++ +...++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        55 --~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP   96 (344)
T PRK10206         55 --DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLVEKP   96 (344)
T ss_pred             --CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcCC-cEEEecC
Confidence              34443 224579999999999999999999999995 5666544

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.00  E-value=1.6e-05  Score=73.55  Aligned_cols=96  Identities=26%  Similarity=0.342  Sum_probs=65.7

Q ss_pred             CeeEEEEEecC-HHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFG-RIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G-~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      +++||||+|+| +.++.+++.+.+.++ ++++++.|+  +.+...   .+...|+              +    .  ..+
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~--~~~~a~---~~a~~~~--------------~----~--~~~   56 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR--DPERAE---AFAEEFG--------------I----A--KAY   56 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC--CHHHHH---HHHHHcC--------------C----C--ccc
Confidence            45999999996 666779999999887 799999987  332211   1122121              0    0  012


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .  +.+++ ..+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        57 ~--~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKP   99 (342)
T COG0673          57 T--DLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKP   99 (342)
T ss_pred             C--CHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCC
Confidence            1  34443 223468999999999999999999999997 4666544

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.86  E-value=4.3e-05  Score=73.38  Aligned_cols=90  Identities=22%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC---------CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE   76 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p---------~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~   76 (296)
                      ++||||+|+|.+|+.++++|.+|+         ++++++|.++  +... +..+  +     +. +              
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~--~~~~-~~~~--~-----~~-~--------------   57 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR--DLEK-DRGV--D-----LP-G--------------   57 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC--Chhh-ccCC--C-----Cc-c--------------
Confidence            489999999999999999997764         6899999886  2211 0000  0     00 0              


Q ss_pred             EEEEEEecCCCCCCCcccCCCcEEEEccCC-ccCHHHHHHHHHCCCCeEEee
Q 022491           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        77 ~~i~~~~~~d~~~i~~~~~~~DvV~~at~~-~~~~~~~~~~l~~G~k~vvid  127 (296)
                        ...+  .|++++ ..+.++|+|++|+|. ..+.+++.+++++|.  -|++
T Consensus        58 --~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk--hVVt  102 (426)
T PRK06349         58 --ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK--HVVT  102 (426)
T ss_pred             --ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC--eEEE
Confidence              0011  134443 224579999999976 345778889999996  4554

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.71  E-value=0.00012  Score=67.16  Aligned_cols=101  Identities=24%  Similarity=0.300  Sum_probs=71.0

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      |+..+.+|.||+|+|++++.+++.|..-|  +.+|++|++++.+- ...|....+       +       +         
T Consensus         1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~-------~-------~---------   57 (351)
T KOG2741|consen    1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNI-------P-------N---------   57 (351)
T ss_pred             CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCC-------C-------C---------
Confidence            66667799999999999999999999988  89999999983322 211111111       0       0         


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       .+++.  ..|++ .++..+|+|..++|+..+.+++-.++..|. .|++.-|
T Consensus        58 -~k~y~--syEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~EKP  104 (351)
T KOG2741|consen   58 -PKAYG--SYEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLCEKP  104 (351)
T ss_pred             -Ccccc--CHHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEeccc
Confidence             01121  23444 235689999999999999999988888874 3666544

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.66  E-value=8.6e-05  Score=69.11  Aligned_cols=106  Identities=25%  Similarity=0.323  Sum_probs=61.0

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC--------C-CcEEEEEecCCCCh----h-hhhhcccccccCCCCcCcceeeeCCc
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR--------D-DVELVAVNDPFIST----D-YMTYMFKYDSVHGQWKHNELKVKDEK   70 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~--------p-~~elv~i~~~~~~~----~-~~a~~l~~~s~~~~~~~~~v~~~~~~   70 (296)
                      |++||+|+|+|.+|+.++++|.++        . ++++++|.++....    + ....++.+-..++...          
T Consensus         1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~----------   70 (336)
T PRK08374          1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS----------   70 (336)
T ss_pred             CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh----------
Confidence            569999999999999999998763        1 48999998752211    0 0000000000000000          


Q ss_pred             eeEECCEEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491           71 TLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        71 ~l~~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid  127 (296)
                      .+.-+   ... ...+++++ +...++|+|++|++.....+...++++.|+  -||.
T Consensus        71 ~~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVt  120 (336)
T PRK08374         71 NWGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK--SVVT  120 (336)
T ss_pred             hcccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEE
Confidence            00000   000 00122332 223579999999998888889999999998  4453

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.60  E-value=0.0002  Score=75.21  Aligned_cols=152  Identities=14%  Similarity=0.042  Sum_probs=87.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcE------------EEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVE------------LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLL   73 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~e------------lv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~   73 (296)
                      |.||+|+|+|++|+.+++.|.++|+++            +++|.|+  +.+.... +  ...+++..             
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~--~~~~a~~-l--a~~~~~~~-------------  630 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL--YLKDAKE-T--VEGIENAE-------------  630 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC--CHHHHHH-H--HHhcCCCc-------------
Confidence            369999999999999999999998877            7888886  2221111 1  11111100             


Q ss_pred             ECCEEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEE
Q 022491           74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVS  153 (296)
Q Consensus        74 ~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs  153 (296)
                          .+.+ ...|.+++.-...++|+|+.|+|...+...+..++++|+  -+++.+... + -...+. ++.+ .+.+.-
T Consensus       631 ----~v~l-Dv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGk--Hvv~eky~~-~-e~~~L~-e~Ak-~AGV~~  699 (1042)
T PLN02819        631 ----AVQL-DVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKK--HLVTASYVS-E-EMSALD-SKAK-EAGITI  699 (1042)
T ss_pred             ----eEEe-ecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCC--CEEECcCCH-H-HHHHHH-HHHH-HcCCEE
Confidence                0111 011333331001479999999999999999999999998  566654220 0 001111 1122 344455


Q ss_pred             cCCcchhhhHhHHHH-----HHhhcCeeEEEEEEEeecCCc
Q 022491          154 NASCTTNCLAPLAKV-----IHDKFGIVEGLMTTVHSITAT  189 (296)
Q Consensus       154 ~p~C~~tal~~~l~~-----L~~~~gi~~~~~~~v~a~sg~  189 (296)
                      -++|.   +.|.+.-     +.+.+.-+-+.+..++++.|.
T Consensus       700 m~e~G---lDPGid~~lA~~~Id~~~~~~GkI~s~~s~~GG  737 (1042)
T PLN02819        700 LCEMG---LDPGIDHMMAMKMIDDAHERGGKVKSFTSYCGG  737 (1042)
T ss_pred             EECCc---cCHHHHHHHHHHHHHhhcccCCcEEEEEEEEcC
Confidence            55666   5665554     233331112345677777774

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.58  E-value=6.3e-05  Score=58.95  Aligned_cols=86  Identities=24%  Similarity=0.286  Sum_probs=52.5

Q ss_pred             ecCHHHHHHHHHHHcCC---CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCCCC
Q 022491           13 GFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEE   89 (296)
Q Consensus        13 G~G~iG~~l~r~l~~~p---~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~~~   89 (296)
                      |+|.+|+.++++|.++.   ++++++|.++. ..-.  ...  ....   . .      .  .        ..  .+.++
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~--~~~--~~~~---~-~------~--~--------~~--~~~~~   53 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLIS--KDW--AASF---P-D------E--A--------FT--TDLEE   53 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEE--TTH--HHHH---T-H------S--C--------EE--SSHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhh--hhh--hhhc---c-c------c--c--------cc--CCHHH
Confidence            88999999999999886   79999999873 1100  000  0000   0 0      0  0        01  12333


Q ss_pred             CCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           90 IPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        90 i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      + ....++|+|+|||+.....++.+.++++|+  -||.+
T Consensus        54 ~-~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~   89 (117)
T PF03447_consen   54 L-IDDPDIDVVVECTSSEAVAEYYEKALERGK--HVVTA   89 (117)
T ss_dssp             H-HTHTT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred             H-hcCcCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence            2 001379999999999988999999999998  55544

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PLN02775 Probable dihydrodipicolinate reductase

Probab=97.57  E-value=0.00023  Score=64.22  Aligned_cols=96  Identities=25%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +.+||.|+|+ |++|+++++.+.+ ++++||+..++....+.+.                        +.+.|..++++.
T Consensus        10 ~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~------------------------~~~~g~~v~~~~   64 (286)
T PLN02775         10 SAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVT------------------------VEVCGVEVRLVG   64 (286)
T ss_pred             CCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccccccc------------------------ceeccceeeeec
Confidence            3589999999 9999999999999 9999999887622221100                        011112334442


Q ss_pred             cCCCCCCC--cccCCCc-EEEEccCCccCHHHHHHHHHCCCCeEE
Q 022491           84 FRNPEEIP--WAKTGAE-YVVESTGVFTDKDKAAAHLKGGAKKVV  125 (296)
Q Consensus        84 ~~d~~~i~--~~~~~~D-vV~~at~~~~~~~~~~~~l~~G~k~vv  125 (296)
                      ..|.++.-  .....+| ++||-|-.....+.++.+++.|+..|+
T Consensus        65 ~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~Vv  109 (286)
T PLN02775         65 PSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVM  109 (286)
T ss_pred             CccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEE
Confidence            22333320  0012588 899998888888999999999986433

>PRK06392 homoserine dehydrogenase; Provisional

Probab=97.48  E-value=0.00036  Score=64.63  Aligned_cols=33  Identities=36%  Similarity=0.663  Sum_probs=29.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC-------CCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQR-------DDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~-------p~~elv~i~~~   39 (296)
                      |||+|+|+|.+|+.++++|.++       .++++++|.++
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds   40 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS   40 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence            4899999999999999999874       46899999876

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.42  E-value=0.00027  Score=56.46  Aligned_cols=81  Identities=25%  Similarity=0.271  Sum_probs=50.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      .+||+|||+|++|..|.++|.+.. .+++.+.+++... +..+..+         +               ..  .+.  
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~~---------~---------------~~--~~~--   60 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSRSPASAERAAAFI---------G---------------AG--AIL--   60 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC-----------T---------------T--------
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCccccccccccc---------c---------------cc--ccc--
Confidence            489999999999999999999875 7899998763222 2111110         0               00  011  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG  119 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~  119 (296)
                       +++++   ....|++|.|+|...-.+.++++.+.
T Consensus        61 -~~~~~---~~~aDlv~iavpDdaI~~va~~La~~   91 (127)
T PF10727_consen   61 -DLEEI---LRDADLVFIAVPDDAIAEVAEQLAQY   91 (127)
T ss_dssp             --TTGG---GCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred             -ccccc---cccCCEEEEEechHHHHHHHHHHHHh
Confidence             34443   35899999999998877777777665

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.42  E-value=0.00058  Score=62.66  Aligned_cols=98  Identities=23%  Similarity=0.175  Sum_probs=56.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~   80 (296)
                      |+.++..||+|+|+|.+|..+++.|.......-+.+.++  +.+.....   .. .     +         +.     ..
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr--~~~~~~~a---~~-~-----g---------~~-----~~   55 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR--SAETRARA---RE-L-----G---------LG-----DR   55 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC--CHHHHHHH---Hh-C-----C---------CC-----ce
Confidence            777766799999999999999999987653222344455  22211110   00 0     0         00     00


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCCC
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAPS  130 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~~  130 (296)
                      +.  .++++.   ..++|+||.|+|.....+..+.+.   +.|.  +|+|.++
T Consensus        56 ~~--~~~~~~---~~~aDvViiavp~~~~~~v~~~l~~~l~~~~--iv~dvgs  101 (307)
T PRK07502         56 VT--TSAAEA---VKGADLVILCVPVGASGAVAAEIAPHLKPGA--IVTDVGS  101 (307)
T ss_pred             ec--CCHHHH---hcCCCEEEECCCHHHHHHHHHHHHhhCCCCC--EEEeCcc
Confidence            11  122222   247899999999876655555443   3454  6777655

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.41  E-value=0.00035  Score=65.80  Aligned_cols=123  Identities=20%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||-|+|+|.+|+.+++.|.++.+.+| .|+|+  +.+..+...  +...++..          .+.+        ...+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V-~iAdR--s~~~~~~i~--~~~~~~v~----------~~~v--------D~~d   58 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEV-TIADR--SKEKCARIA--ELIGGKVE----------ALQV--------DAAD   58 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceE-EEEeC--CHHHHHHHH--hhccccce----------eEEe--------cccC
Confidence            689999999999999999999887655 45566  333222211  12111111          0111        1112


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcc
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCT  158 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~  158 (296)
                      .+.+.-...+.|+||.|.|.+.....++.+++.|+  -++|.+....+.  ..+.++.-  .+.+.+.++|.
T Consensus        59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv--~yvDts~~~~~~--~~~~~~a~--~Agit~v~~~G  124 (389)
T COG1748          59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGV--DYVDTSYYEEPP--WKLDEEAK--KAGITAVLGCG  124 (389)
T ss_pred             hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCC--CEEEcccCCchh--hhhhHHHH--HcCeEEEcccC
Confidence            21110012467999999999999999999999999  677776543331  33332222  46667777775

>PRK06813 homoserine dehydrogenase; Validated

Probab=97.39  E-value=0.00056  Score=63.78  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=29.4

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC---------CCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR---------DDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~---------p~~elv~i~~~   39 (296)
                      |+++|+|+|+|.+|+.++++|.++         -+++|++|.++
T Consensus         1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~   44 (346)
T PRK06813          1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR   44 (346)
T ss_pred             CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence            468999999999999999998653         25889999865

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.39  E-value=0.00024  Score=59.77  Aligned_cols=91  Identities=21%  Similarity=0.364  Sum_probs=63.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +.++.|+|+|.+|+.++..-.. +.+++++++.|.  +++.+      ..    .              +++  +++..-
T Consensus        84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~~V------G~----~--------------~~~--v~V~~~  135 (211)
T COG2344          84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPDKV------GT----K--------------IGD--VPVYDL  135 (211)
T ss_pred             ceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHHHh------Cc----c--------------cCC--eeeech
Confidence            4899999999999988765443 567999999986  33211      11    0              111  333332


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEE
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV  125 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vv  125 (296)
                      .+.+.+ ....++|+++.|.|...+.+.+..+.++|+|.++
T Consensus       136 d~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIl  175 (211)
T COG2344         136 DDLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGIL  175 (211)
T ss_pred             HHHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEE
Confidence            234433 1235899999999999999999999999998643

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=97.18  E-value=0.001  Score=62.03  Aligned_cols=92  Identities=20%  Similarity=0.182  Sum_probs=59.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ++||||+|+ ++|+..++.+.+.| ++|+++|.|+..+. +.+      ...|+                     ++.+.
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~------A~~~g---------------------i~~y~   54 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRAL------AHRLG---------------------VPLYC   54 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHH------HHHhC---------------------CCccC
Confidence            389999999 56999999999988 89999999873221 111      11111                     00111


Q ss_pred             cCCCCCCCcccCCCcEEEE--ccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVE--STGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~--at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        +.+++. .+.++|+|..  ++|++.+.+.+.+++++|. .|++--|
T Consensus        55 --~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGk-HVL~EKP   98 (343)
T TIGR01761        55 --EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGI-HVLQEHP   98 (343)
T ss_pred             --CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCC-eEEEcCC
Confidence              344441 1234455554  3366788999999999996 4666544

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.16  E-value=0.00082  Score=58.45  Aligned_cols=91  Identities=18%  Similarity=0.280  Sum_probs=59.4

Q ss_pred             eEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||+|+|+|.+|+.+++.+. ..+.++++++.|.  +++....     .                   +++..  +....
T Consensus        85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~~~~-----~-------------------i~g~~--v~~~~  136 (213)
T PRK05472         85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEKIGT-----K-------------------IGGIP--VYHID  136 (213)
T ss_pred             cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--ChhhcCC-----E-------------------eCCeE--EcCHH
Confidence            78999999999999998643 3457999999876  3321000     0                   01111  11111


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +.+++ ....++|+|+.|+|.....+.+..++++|.+.++.
T Consensus       137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~  176 (213)
T PRK05472        137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILN  176 (213)
T ss_pred             HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEee
Confidence            22332 12347999999999998888888899999864433

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=97.09  E-value=0.0013  Score=59.13  Aligned_cols=88  Identities=24%  Similarity=0.214  Sum_probs=57.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEE-ecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i-~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +||.|+|+ |++|+++++++.+ ++++||+. .++....++...                         +.+..+++..+
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~-------------------------~~g~~v~v~~~   54 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAE-------------------------VAGKEILLHGP   54 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhh-------------------------hcccceeeecc
Confidence            58999999 9999999999888 89999997 443111111100                         01112333211


Q ss_pred             ----CCCCCCCcccCCCc-EEEEccCCccCHHHHHHHHHCCCC
Q 022491           85 ----RNPEEIPWAKTGAE-YVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        85 ----~d~~~i~~~~~~~D-vV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                          .+++++.  ...+| ++||-|-.....+.+..+++.|+.
T Consensus        55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~   95 (275)
T TIGR02130        55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIP   95 (275)
T ss_pred             ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCC
Confidence                1233331  12378 999999888888999999999985

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.08  E-value=0.0013  Score=58.84  Aligned_cols=93  Identities=19%  Similarity=0.171  Sum_probs=53.9

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ||+||+|+|+|.+|..+++.|.+.. ....+.+.++  +.+....+   ...++              +       .+. 
T Consensus         1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r--~~~~~~~~---~~~~g--------------~-------~~~-   53 (267)
T PRK11880          1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP--SPEKRAAL---AEEYG--------------V-------RAA-   53 (267)
T ss_pred             CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC--CHHHHHHH---HHhcC--------------C-------eec-
Confidence            4579999999999999999887653 2234455555  22211111   11000              1       011 


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       .+.+++   ..++|+||.|++.....+.++.+.... +++|++..
T Consensus        54 -~~~~~~---~~~advVil~v~~~~~~~v~~~l~~~~-~~~vvs~~   94 (267)
T PRK11880         54 -TDNQEA---AQEADVVVLAVKPQVMEEVLSELKGQL-DKLVVSIA   94 (267)
T ss_pred             -CChHHH---HhcCCEEEEEcCHHHHHHHHHHHHhhc-CCEEEEec
Confidence             123332   247899999999987777766654432 23667654

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0028  Score=58.45  Aligned_cols=98  Identities=27%  Similarity=0.375  Sum_probs=59.2

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC---------CCcEEEEEecCCCChhhhhhcccccccC-CCCcCcceeeeCCceeEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR---------DDVELVAVNDPFISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLF   74 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~---------p~~elv~i~~~~~~~~~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~   74 (296)
                      |++||+|+|+|-+|+.++|+|.++         -++++++|.+++....   +  .++-.- ..|.      .++ .+  
T Consensus         2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~---~--~~~~~~~~~~~------~~~-~~--   67 (333)
T COG0460           2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLV---R--DLDLLNAEVWT------TDG-AL--   67 (333)
T ss_pred             ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhc---c--cccccchhhhe------ecc-cc--
Confidence            469999999999999999999874         2588889887622211   0  001000 0010      000 00  


Q ss_pred             CCEEEEEEecCCCCCCCcccCCCcEEEEccCC--ccCH--HHHHHHHHCCCCeEEeeCC
Q 022491           75 GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV--FTDK--DKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        75 ~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~--~~~~--~~~~~~l~~G~k~vvid~~  129 (296)
                              . .+ .++.+ ..++|+|++++|.  ..+.  ++..++++.|.  .||.+.
T Consensus        68 --------~-~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN  113 (333)
T COG0460          68 --------S-LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN  113 (333)
T ss_pred             --------c-cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC
Confidence                    0 01 22222 4678999999997  2233  57788899997  677653

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.00  E-value=0.0013  Score=49.21  Aligned_cols=90  Identities=26%  Similarity=0.266  Sum_probs=54.0

Q ss_pred             EEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ||||+|+|.+|..+++.|.++.  .-++..++++  +.+...++.   ..++              .       .++.. 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~---~~~~--------------~-------~~~~~-   53 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELA---KEYG--------------V-------QATAD-   53 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHH---HHCT--------------T-------EEESE-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHH---Hhhc--------------c-------ccccC-
Confidence            7999999999999999998875  3566555555  443332221   1111              0       01110 


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHH--HHCCCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH--LKGGAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~--l~~G~k~vvid~~  129 (296)
                      +..++   ..+.|+||.|.+.....+.+..+  ...+.  .+||..
T Consensus        54 ~~~~~---~~~advvilav~p~~~~~v~~~i~~~~~~~--~vis~~   94 (96)
T PF03807_consen   54 DNEEA---AQEADVVILAVKPQQLPEVLSEIPHLLKGK--LVISIA   94 (96)
T ss_dssp             EHHHH---HHHTSEEEE-S-GGGHHHHHHHHHHHHTTS--EEEEES
T ss_pred             ChHHh---hccCCEEEEEECHHHHHHHHHHHhhccCCC--EEEEeC
Confidence            12222   23689999999998888777665  44555  788753

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.96  E-value=0.0014  Score=62.07  Aligned_cols=98  Identities=22%  Similarity=0.376  Sum_probs=57.2

Q ss_pred             EEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCCC
Q 022491            9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPE   88 (296)
Q Consensus         9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~~   88 (296)
                      |.|+|+|++|+.+++.|.+++.++-+.+.++  +.+.+..+.  ++..+    ..        +.     .......|++
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~--~~~~~----~~--------~~-----~~~~d~~~~~   59 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLA--EKLLG----DR--------VE-----AVQVDVNDPE   59 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHH--T--TT----TT--------EE-----EEE--TTTHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHH--hhccc----cc--------ee-----EEEEecCCHH
Confidence            6899999999999999999998855666666  333222221  11000    00        10     0011111222


Q ss_pred             CCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           89 EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        89 ~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      ++.=...+.|+|+.|+|.+.....++.+++.|+  -.+|.+
T Consensus        60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~~   98 (386)
T PF03435_consen   60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDTS   98 (386)
T ss_dssp             HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEESS
T ss_pred             HHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceeccc
Confidence            221113588999999999988889999999999  678744

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.83  E-value=0.0011  Score=50.14  Aligned_cols=89  Identities=19%  Similarity=0.275  Sum_probs=59.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .|+.|+|+|..|+.++........++++++.|.  +++..      .+                  .+++  ++++.  +
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~~------G~------------------~i~g--ipV~~--~   53 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEKI------GK------------------EIGG--IPVYG--S   53 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTTT------TS------------------EETT--EEEES--S
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCcc------Cc------------------EECC--EEeec--c
Confidence            789999999999988865666667889888876  33210      11                  1111  34552  1


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .+++.-.. ++|+.+.|.|.....+.+.+++++|.|.++.
T Consensus        54 ~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~~gIk~i~n   92 (96)
T PF02629_consen   54 MDELEEFI-EIDIAIITVPAEAAQEVADELVEAGIKGIVN   92 (96)
T ss_dssp             HHHHHHHC-TTSEEEEES-HHHHHHHHHHHHHTT-SEEEE
T ss_pred             HHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEE
Confidence            22221001 4899999999999999999999999987654

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.81  E-value=0.0029  Score=58.24  Aligned_cols=100  Identities=23%  Similarity=0.335  Sum_probs=61.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCccee----------eeCCceeEEC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK----------VKDEKTLLFG   75 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~----------~~~~~~l~~~   75 (296)
                      .+|||+||+|.+|+-++-.+..-|.+++++|+++.-+....|+    +..+..=. ..+.          .+.|+     
T Consensus        17 PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~----~~ag~~~~-~~~e~~~~s~~a~Ai~aGK-----   86 (438)
T COG4091          17 PIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY----DRAGGPKI-EAVEADDASKMADAIEAGK-----   86 (438)
T ss_pred             ceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH----HHhcCCcc-cccccchhhHHHHHHhcCc-----
Confidence            4999999999999999999999999999999988444433332    33221100 0000          01221     


Q ss_pred             CEEEEEEecCCCCCCCcccCCCcEEEEccCCccC-HHHHHHHHHCCC
Q 022491           76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD-KDKAAAHLKGGA  121 (296)
Q Consensus        76 ~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~-~~~~~~~l~~G~  121 (296)
                         +.+.  .|.+.+ .....+|++|++||+-.. .+....++..|.
T Consensus        87 ---i~vT--~D~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~K  127 (438)
T COG4091          87 ---IAVT--DDAELI-IANDLIDVIIDATGVPEVGAKIALEAILHGK  127 (438)
T ss_pred             ---EEEe--cchhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcCC
Confidence               2222  134443 335689999999998443 345555555553

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.76  E-value=0.0026  Score=56.12  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=52.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +||+|+|+|.+|..+++.|.+++  .++.+.+.++ .+.+....+   ...+   .                  +...  
T Consensus         5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~-~~~~~~~~~---~~~~---~------------------~~~~--   57 (245)
T PRK07634          5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR-SNVEKLDQL---QARY---N------------------VSTT--   57 (245)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC-CCHHHHHHH---HHHc---C------------------cEEe--
Confidence            78999999999999999887654  4552333333 122211110   0000   0                  0111  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      .+.+++   ..++|+||.|+|.....+.++.+...--.++||+..+
T Consensus        58 ~~~~~~---~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~~  100 (245)
T PRK07634         58 TDWKQH---VTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAA  100 (245)
T ss_pred             CChHHH---HhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEECC
Confidence            133332   2478999999999888777665532101236776543

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.66  E-value=0.0055  Score=57.69  Aligned_cols=111  Identities=19%  Similarity=0.203  Sum_probs=65.1

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---eeE--ECCEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TLL--FGEKPV   79 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l~--~~~~~i   79 (296)
                      .||+|+|+ |-||+..++.+.++| .+++++++.. .+.+.+....  ....|++-    ...++.   .+.  ..+..+
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~-~n~~~l~~q~--~~f~p~~v----~i~~~~~~~~l~~~l~~~~~   74 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG-KNVELLAEQA--REFRPKYV----VVADEEAAKELKEALAAAGI   74 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhccCCc
Confidence            68999998 999999999999988 5999999854 4544332221  12122211    110100   000  001012


Q ss_pred             EEEecC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           80 AVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        80 ~~~~~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .++... ...++ ....++|+|+.+.+.+...+..-.++++|.+ +.+
T Consensus        75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~-VaL  120 (385)
T PRK05447         75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGKR-IAL  120 (385)
T ss_pred             eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCCc-EEE
Confidence            222211 12222 1124799999999998888888889999963 444

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.62  E-value=0.01  Score=53.93  Aligned_cols=158  Identities=16%  Similarity=0.235  Sum_probs=76.8

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcc-cccccCCCCc-CcceeeeCCceeEECCEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMF-KYDSVHGQWK-HNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l-~~~s~~~~~~-~~~v~~~~~~~l~~~~~~   78 (296)
                      |+..| .||||+|+|.+|..++..+..+. .+++.. |+  +.+.+.... +......++. .+......-... .  ..
T Consensus         1 ~~~~~-~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~-d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-~--~~   72 (286)
T PRK07819          1 MSDAI-QRVGVVGAGQMGAGIAEVCARAG-VDVLVF-ET--TEELATAGRNRIEKSLERAVSRGKLTERERDAA-L--AR   72 (286)
T ss_pred             CCCCc-cEEEEEcccHHHHHHHHHHHhCC-CEEEEE-EC--CHHHHHHHHHHHHHHHHHHHhcccCChhhHHHH-H--hC
Confidence            67664 58999999999999999888774 554444 44  222111100 0000000000 000000000000 0  11


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCHHH-----HHHHH-HCCCCeEEeeCCCC----------CCCeEEccc--
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDK-----AAAHL-KGGAKKVVISAPSK----------DAPMFVVGV--  140 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~-----~~~~l-~~G~k~vvid~~~~----------d~~~~v~gv--  140 (296)
                      +...  .+++.+    .++|+||+|.+-....+.     ++++. ..++  ++.|++|.          ..|.-+.|+  
T Consensus        73 l~~~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf  144 (286)
T PRK07819         73 LRFT--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHF  144 (286)
T ss_pred             eEee--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEec
Confidence            2222  244433    589999999998655432     23333 4455  78887664          123222232  


Q ss_pred             -ChhccCCCCCeEEcCCcchhhhHhHHHHHHhhcC
Q 022491          141 -NEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFG  174 (296)
Q Consensus       141 -n~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~g  174 (296)
                       |+..+-+...+|..+++....+.-+..-+.+..|
T Consensus       145 ~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lg  179 (286)
T PRK07819        145 FNPVPVLPLVELVPTLVTSEATVARAEEFASDVLG  179 (286)
T ss_pred             CCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence             3333222345777666666665554444333333

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.53  E-value=0.0061  Score=57.42  Aligned_cols=121  Identities=17%  Similarity=0.176  Sum_probs=74.9

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||+|+|. |.||+.+.+.|.+....+|.++ |+ .+           ..                          .  .
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~-~d-----------~~--------------------------~--~   43 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DP-AD-----------PG--------------------------S--L   43 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cC-Cc-----------cc--------------------------c--C
Confidence            68999999 9999999999986445665543 33 11           00                          0  0


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHH------HCCCCeEEeeCCCC----------CCCeEEcccC---hhccC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL------KGGAKKVVISAPSK----------DAPMFVVGVN---EKEYK  146 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l------~~G~k~vvid~~~~----------d~~~~v~gvn---~~~l~  146 (296)
                      ++++.   ..++|+||.|+|.....+..+++.      +.|+  +|.|.+|-          ..+.||-+-|   +|.-.
T Consensus        44 ~~~~~---v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~--iVtDVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~  118 (370)
T PRK08818         44 DPATL---LQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ--LWLDVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSP  118 (370)
T ss_pred             CHHHH---hcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe--EEEECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCc
Confidence            12221   247899999999988888777664      4566  89998774          1234665555   33211


Q ss_pred             --CCCCeEEcCCcchhhhHhHHHHHHhhcC
Q 022491          147 --PELDIVSNASCTTNCLAPLAKVIHDKFG  174 (296)
Q Consensus       147 --~~~~iIs~p~C~~tal~~~l~~L~~~~g  174 (296)
                        ++..+|-.|+-.... ...+.-|.+..|
T Consensus       119 lf~g~~~iltp~~~~~~-~~~v~~l~~~~G  147 (370)
T PRK08818        119 TLKGRVMVVCEARLQHW-SPWVQSLCSALQ  147 (370)
T ss_pred             ccCCCeEEEeCCCchhH-HHHHHHHHHHcC
Confidence              256666666533322 334455555555

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.52  E-value=0.011  Score=53.56  Aligned_cols=89  Identities=15%  Similarity=0.079  Sum_probs=52.5

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~   87 (296)
                      ||+|+|+|.+|+.+++.|.++. .++.++ ++  +.+.+....  .  .     +.        +       .... .+.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~-d~--~~~~~~~a~--~--~-----g~--------~-------~~~~-~~~   52 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGV-SR--RESTCERAI--E--R-----GL--------V-------DEAS-TDL   52 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCC-CEEEEE-EC--CHHHHHHHH--H--C-----CC--------c-------cccc-CCH
Confidence            7999999999999999998764 565554 44  222111111  0  0     00        0       0000 122


Q ss_pred             CCCCcccCCCcEEEEccCCccCHHHHHHHHH---CCCCeEEeeCCCC
Q 022491           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLK---GGAKKVVISAPSK  131 (296)
Q Consensus        88 ~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~---~G~k~vvid~~~~  131 (296)
                      +.    ..++|+||.|+|.....+..+++..   .++  ++.|.++-
T Consensus        53 ~~----~~~aDlVilavp~~~~~~~~~~l~~~l~~~~--ii~d~~Sv   93 (279)
T PRK07417         53 SL----LKDCDLVILALPIGLLLPPSEQLIPALPPEA--IVTDVGSV   93 (279)
T ss_pred             hH----hcCCCEEEEcCCHHHHHHHHHHHHHhCCCCc--EEEeCcch
Confidence            22    2478999999998776666555543   344  77877653

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.46  E-value=0.0084  Score=54.08  Aligned_cols=89  Identities=17%  Similarity=0.173  Sum_probs=53.3

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            8 KIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      ||+|+|+|.+|..+++.|.+... .++.. .++  +.+......  +  .     +         +.      ...  .+
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~-~d~--~~~~~~~~~--~--~-----g---------~~------~~~--~~   52 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYG-YDH--NELHLKKAL--E--L-----G---------LV------DEI--VS   52 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEE-EcC--CHHHHHHHH--H--C-----C---------CC------ccc--CC
Confidence            79999999999999999987643 35444 344  222111110  0  0     0         00      000  12


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHH--CCCCeEEeeCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK--GGAKKVVISAPSK  131 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~--~G~k~vvid~~~~  131 (296)
                      ++++    .++|+||.|+|.....+.+..+..  .|.  +|+|.++.
T Consensus        53 ~~~~----~~aD~Vilavp~~~~~~~~~~l~~l~~~~--iv~d~gs~   93 (275)
T PRK08507         53 FEEL----KKCDVIFLAIPVDAIIEILPKLLDIKENT--TIIDLGST   93 (275)
T ss_pred             HHHH----hcCCEEEEeCcHHHHHHHHHHHhccCCCC--EEEECccc
Confidence            3333    248999999999877777666543  444  78887653

>PLN02256 arogenate dehydrogenase

Probab=96.41  E-value=0.0087  Score=54.97  Aligned_cols=89  Identities=20%  Similarity=0.395  Sum_probs=54.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||+|+|+|.+|+.+++.|.+.+ .++.++...  .....+.      .+            |  +       ..+.  
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~~--~~~~~a~------~~------------g--v-------~~~~--   83 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSRS--DYSDIAA------EL------------G--V-------SFFR--   83 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEECc--cHHHHHH------Hc------------C--C-------eeeC--
Confidence            479999999999999999998765 577655432  2111111      00            0  1       0111  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHH----HHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH----LKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~----l~~G~k~vvid~~~  130 (296)
                      +.+++-  ..++|+||.|+|.....+...++    +..|+  +++|..+
T Consensus        84 ~~~e~~--~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~--iviDv~S  128 (304)
T PLN02256         84 DPDDFC--EEHPDVVLLCTSILSTEAVLRSLPLQRLKRST--LFVDVLS  128 (304)
T ss_pred             CHHHHh--hCCCCEEEEecCHHHHHHHHHhhhhhccCCCC--EEEecCC
Confidence            222220  13589999999987766666554    23455  8888776

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=96.37  E-value=0.013  Score=49.17  Aligned_cols=33  Identities=15%  Similarity=-0.028  Sum_probs=27.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +.+-|+|+ |..|+++++.+++.|.|.-|.+-.+
T Consensus        19 ~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~R   52 (238)
T KOG4039|consen   19 MSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILR   52 (238)
T ss_pred             cceEEEeccccccHHHHHHHHhcccceeEEEEEe
Confidence            67899999 9999999999999999865555444

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.30  E-value=0.0067  Score=55.19  Aligned_cols=33  Identities=30%  Similarity=0.545  Sum_probs=25.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |++||||+|+|.+|..+++.|.+.. .++. +.++
T Consensus         1 ~~~~IgviG~G~mG~~~a~~l~~~g-~~v~-~~d~   33 (296)
T PRK11559          1 MTMKVGFIGLGIMGKPMSKNLLKAG-YSLV-VYDR   33 (296)
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCC-CeEE-EEcC
Confidence            4478999999999999999998754 5654 3454

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.27  E-value=0.015  Score=52.74  Aligned_cols=122  Identities=20%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +++|+|+|+|.||+.++|.|.... .+.+.... .  +.+.+..     ...  +  +         +..  .   ..  
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d-~--~~~~~~~-----a~~--l--g---------v~d--~---~~--   54 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRD-R--SAATLKA-----ALE--L--G---------VID--E---LT--   54 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeec-C--cHHHHHH-----Hhh--c--C---------ccc--c---cc--
Confidence            478999999999999999998754 34454442 2  2211100     000  0  0         100  0   00  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeCCCC---------C-CC---eEEcccC---hh--
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISAPSK---------D-AP---MFVVGVN---EK--  143 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~~~~---------d-~~---~~v~gvn---~~--  143 (296)
                      .+.... + ..+.|+||.|+|...+.+.++++   ++.|+  .|.|..|.         . .|   .++.+-|   ++  
T Consensus        55 ~~~~~~-~-~~~aD~VivavPi~~~~~~l~~l~~~l~~g~--iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~  130 (279)
T COG0287          55 VAGLAE-A-AAEADLVIVAVPIEATEEVLKELAPHLKKGA--IVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEAD  130 (279)
T ss_pred             cchhhh-h-cccCCEEEEeccHHHHHHHHHHhcccCCCCC--EEEecccccHHHHHHHHHhccCCCeeEecCCCCCCccc
Confidence            011011 1 24689999999998888777665   45788  88887764         0 11   4666665   31  


Q ss_pred             --ccCCCCCeEEcCCcchh
Q 022491          144 --EYKPELDIVSNASCTTN  160 (296)
Q Consensus       144 --~l~~~~~iIs~p~C~~t  160 (296)
                        .+. +..+|=.|+-.+-
T Consensus       131 ~~lf~-~~~~vltp~~~~~  148 (279)
T COG0287         131 AGLFE-NAVVVLTPSEGTE  148 (279)
T ss_pred             ccccC-CCEEEEcCCCCCC
Confidence              122 5677777776544

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.24  E-value=0.0064  Score=55.42  Aligned_cols=91  Identities=21%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .+++|+|+|.+|+.+++.|..+. +++... ++  +.+..+...   . .            +  .    .   .+...+
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~-~R--~~~~~~~~~---~-~------------g--~----~---~~~~~~  202 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALG-ARVFVG-AR--SSADLARIT---E-M------------G--L----I---PFPLNK  202 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCC-CEEEEE-eC--CHHHHHHHH---H-C------------C--C----e---eecHHH
Confidence            58999999999999999999876 565544 44  222111110   0 0            0  0    0   000001


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK  131 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~  131 (296)
                      .++.   ..+.|+||.|+|.....+..-..++.++  ++||.++.
T Consensus       203 l~~~---l~~aDiVint~P~~ii~~~~l~~~k~~a--liIDlas~  242 (287)
T TIGR02853       203 LEEK---VAEIDIVINTIPALVLTADVLSKLPKHA--VIIDLASK  242 (287)
T ss_pred             HHHH---hccCCEEEECCChHHhCHHHHhcCCCCe--EEEEeCcC
Confidence            2222   2578999999997642222223345566  88987764

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02700 homoserine dehydrogenase family protein

Probab=96.20  E-value=0.021  Score=53.90  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=28.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCC--------CcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p--------~~elv~i~~~   39 (296)
                      |+++|+|+|+|.+|+.|+++|.+..        ++++++|++.
T Consensus         2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s   44 (377)
T PLN02700          2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS   44 (377)
T ss_pred             cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence            4589999999999999999986532        4788899764

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.20  E-value=0.017  Score=50.73  Aligned_cols=33  Identities=33%  Similarity=0.616  Sum_probs=29.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+||+|.|+|.+|+.+++.|.+. .+++++|+|.
T Consensus        31 ~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~   63 (227)
T cd01076          31 GARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS   63 (227)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence            47999999999999999999887 5999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.13  E-value=0.017  Score=52.19  Aligned_cols=91  Identities=15%  Similarity=0.215  Sum_probs=52.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCC--cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~--~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      .+||||+|+|.+|..+++.|.+...  .+-+.+.++  +.+.+..+.  +. ++              .       ....
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r--~~~~~~~l~--~~-~g--------------~-------~~~~   55 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL--NVSNLKNAS--DK-YG--------------I-------TITT   55 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC--CHHHHHHHH--Hh-cC--------------c-------EEeC
Confidence            3689999999999999999987542  222344454  332211111  00 10              0       0111


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~  129 (296)
                        +..++   ..++|+||.|++.....+.++.+.   +.+.  ++||.-
T Consensus        56 --~~~e~---~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~--lvISi~   97 (272)
T PRK12491         56 --NNNEV---ANSADILILSIKPDLYSSVINQIKDQIKNDV--IVVTIA   97 (272)
T ss_pred             --CcHHH---HhhCCEEEEEeChHHHHHHHHHHHHhhcCCc--EEEEeC
Confidence              23333   247899999999876666555543   3343  788753

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.09  E-value=0.0041  Score=51.66  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=23.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+|||++|+|.+|..+++.|.++. .++. +.++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g-~~v~-~~d~   32 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAG-YEVT-VYDR   32 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTT-TEEE-EEES
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcC-CeEE-eecc
Confidence            379999999999999999998775 5654 4455

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.01  E-value=0.0076  Score=50.32  Aligned_cols=29  Identities=34%  Similarity=0.462  Sum_probs=26.0

Q ss_pred             EEEEec-CHHHHHHHHHHHcCCCcEEEEEec
Q 022491            9 IGINGF-GRIGRLVARVALQRDDVELVAVND   38 (296)
Q Consensus         9 vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~   38 (296)
                      |.|.|+ |++|+.+++.|.+++ .++.++.-
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R   30 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR   30 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEec
Confidence            689999 999999999999987 88888863

...

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.96  E-value=0.068  Score=45.24  Aligned_cols=30  Identities=37%  Similarity=0.562  Sum_probs=25.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||||+|+ |.+|.+++.-+..+. -|+++|.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAiv   31 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIV   31 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCC-CeeEEEE
Confidence            48999999 999999998887765 6788886

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.90  E-value=0.029  Score=51.43  Aligned_cols=30  Identities=23%  Similarity=0.437  Sum_probs=25.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||.|.|+ |++|+.+++.|.++. .++.++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~   31 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEG-YQVRCLV   31 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CeEEEEE
Confidence            37999999 999999999999875 5777775

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.89  E-value=0.012  Score=52.48  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=24.9

Q ss_pred             EEEEEecCHHHHHHHHHHHcCC-CcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRD-DVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~   39 (296)
                      ||||+|+|.+|+.+++.|.+.. ..+.+.+.++
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r   34 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR   34 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence            7999999999999999988754 3444556555

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.83  E-value=0.017  Score=52.79  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=52.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .||+|+|+|.+|+.+++.|.... .++..+ ++  +......   ..+ ++              .    +   .....+
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~-~r--~~~~~~~---~~~-~G--------------~----~---~~~~~~  203 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALG-ANVTVG-AR--KSAHLAR---ITE-MG--------------L----S---PFHLSE  203 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CEEEEE-EC--CHHHHHH---HHH-cC--------------C----e---eecHHH
Confidence            58999999999999999999876 555444 44  2211111   011 10              0    0   000001


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK  131 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~  131 (296)
                      ..+.   ..+.|+||.|+|.....+..-..++.|.  +++|..+.
T Consensus       204 l~~~---l~~aDiVI~t~p~~~i~~~~l~~~~~g~--vIIDla~~  243 (296)
T PRK08306        204 LAEE---VGKIDIIFNTIPALVLTKEVLSKMPPEA--LIIDLASK  243 (296)
T ss_pred             HHHH---hCCCCEEEECCChhhhhHHHHHcCCCCc--EEEEEccC
Confidence            1121   2578999999997543332223345676  88887654

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.80  E-value=0.067  Score=49.33  Aligned_cols=36  Identities=28%  Similarity=0.374  Sum_probs=27.9

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |...++.+|-|-|+ |+||..+++.|+.+.+-=...|
T Consensus         1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtV   37 (327)
T KOG1502|consen    1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTV   37 (327)
T ss_pred             CCCCCCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEE
Confidence            44444578999999 9999999999999986533333

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=95.80  E-value=0.038  Score=47.73  Aligned_cols=92  Identities=22%  Similarity=0.164  Sum_probs=54.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      ++++|+|+|.+|..|.+.+..-. .|++..+.+  .++..+...  +...+              .      +.-.  ..
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r--~~~~~~a~a--~~l~~--------------~------i~~~--~~   54 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAG-HEVIIGSSR--GPKALAAAA--AALGP--------------L------ITGG--SN   54 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCC-CeEEEecCC--ChhHHHHHH--Hhhcc--------------c------cccC--Ch
Confidence            68999999999999999988754 555555443  332111111  00000              0      0001  01


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHH-CCCCeEEeeCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK-GGAKKVVISAPS  130 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~-~G~k~vvid~~~  130 (296)
                      .+.    ....|+||.+.|-.......+.+.+ -| .|+|||..-
T Consensus        55 ~dA----~~~aDVVvLAVP~~a~~~v~~~l~~~~~-~KIvID~tn   94 (211)
T COG2085          55 EDA----AALADVVVLAVPFEAIPDVLAELRDALG-GKIVIDATN   94 (211)
T ss_pred             HHH----HhcCCEEEEeccHHHHHhHHHHHHHHhC-CeEEEecCC
Confidence            122    2468999999998877777776654 23 348998653

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=95.76  E-value=0.019  Score=52.91  Aligned_cols=93  Identities=16%  Similarity=0.255  Sum_probs=53.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||+|+|+|.+|+.+++.|..+. .+-+.+.++..+ ...++.      .++    .              .   +....
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~------~~g----~--------------~---~~~~~  230 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAK------ELG----G--------------N---AVPLD  230 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH------HcC----C--------------e---EEeHH
Confidence            68999999999999999998743 444555555221 111111      111    0              0   00000


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC--CCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG--GAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~--G~k~vvid~~~  130 (296)
                      +..+.   ..++|+||.|||.....+....+++.  +.+++++|.+-
T Consensus       231 ~~~~~---l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         231 ELLEL---LNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             HHHHH---HhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            11221   24689999999987764444444432  23458888764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.74  E-value=0.028  Score=46.38  Aligned_cols=96  Identities=17%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCC--C-CcCcceeeeCCceeEECCEEEEEEec
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG--Q-WKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~--~-~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||+|+|+|..|..++..|..+.  .-|.+..+  +.+.+.. +  ...+.  . ++ + +      .+..   .+.+.  
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~--~~~~~~~-i--~~~~~n~~~~~-~-~------~l~~---~i~~t--   60 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG--HEVTLWGR--DEEQIEE-I--NETRQNPKYLP-G-I------KLPE---NIKAT--   60 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT--EEEEEETS--CHHHHHH-H--HHHTSETTTST-T-S------BEET---TEEEE--
T ss_pred             CEEEECcCHHHHHHHHHHHHcC--CEEEEEec--cHHHHHH-H--HHhCCCCCCCC-C-c------ccCc---ccccc--
Confidence            7999999999999999999876  33445554  3222211 1  11121  1 11 1 1      1111   12232  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISA  128 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~  128 (296)
                      .|+++.   ..+.|+++.|+|+...++.++++.   +.+.  .++..
T Consensus        61 ~dl~~a---~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~--~ii~~  102 (157)
T PF01210_consen   61 TDLEEA---LEDADIIIIAVPSQAHREVLEQLAPYLKKGQ--IIISA  102 (157)
T ss_dssp             SSHHHH---HTT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEEET
T ss_pred             cCHHHH---hCcccEEEecccHHHHHHHHHHHhhccCCCC--EEEEe
Confidence            255443   358999999999999888777653   3555  55544

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.74  E-value=0.022  Score=52.81  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=57.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .+++|+|+|.+|+..++.+.....++.+.|.++  +.+....+.  +.....+.           +     .+..+  .+
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r--~~~~a~~~~--~~~~~~~~-----------~-----~~~~~--~~  185 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR--TFEKAYAFA--QEIQSKFN-----------T-----EIYVV--NS  185 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECC--CHHHHHHHH--HHHHHhcC-----------C-----cEEEe--CC
Confidence            589999999999999988876566888888887  332211111  00000000           1     11122  13


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +++.   ..++|+|+.|||.. +.... ..++.|+  .|+.-.+
T Consensus       186 ~~~~---~~~aDiVi~aT~s~-~p~i~-~~l~~G~--hV~~iGs  222 (325)
T PRK08618        186 ADEA---IEEADIIVTVTNAK-TPVFS-EKLKKGV--HINAVGS  222 (325)
T ss_pred             HHHH---HhcCCEEEEccCCC-CcchH-HhcCCCc--EEEecCC
Confidence            3433   25799999999987 34445 6778888  5554443

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.72  E-value=0.011  Score=51.63  Aligned_cols=95  Identities=23%  Similarity=0.234  Sum_probs=55.7

Q ss_pred             EEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCC
Q 022491            9 IGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (296)
Q Consensus         9 vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~   87 (296)
                      |.|.|+ |.+|+.+++.|.. +.+++.++.-. . ....+..+  ..             .|..+      + .....|+
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~-~-~~~~~~~l--~~-------------~g~~v------v-~~d~~~~   55 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRD-P-SSDRAQQL--QA-------------LGAEV------V-EADYDDP   55 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESS-S-HHHHHHHH--HH-------------TTTEE------E-ES-TT-H
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEec-c-chhhhhhh--hc-------------ccceE------e-ecccCCH
Confidence            689999 9999999999998 66888888744 2 11111111  11             01001      0 0001122


Q ss_pred             CCCCcccCCCcEEEEccCCc------cCHHHHHHHHHCCCCeEEeeC
Q 022491           88 EEIPWAKTGAEYVVESTGVF------TDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        88 ~~i~~~~~~~DvV~~at~~~------~~~~~~~~~l~~G~k~vvid~  128 (296)
                      +.+.-...++|.||.+++..      .....+..+.++|+|++|.+.
T Consensus        56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss  102 (233)
T PF05368_consen   56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS  102 (233)
T ss_dssp             HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred             HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence            22221136999999999954      223456677888999888754

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.70  E-value=0.03  Score=45.55  Aligned_cols=32  Identities=22%  Similarity=0.196  Sum_probs=25.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .|++|+|+|.+|+.+++.|..+. .+.+.+.++
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r   51 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNR   51 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence            68999999999999999998875 444555555

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=95.62  E-value=0.023  Score=53.76  Aligned_cols=77  Identities=19%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             eeEEEEEe-cCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G-~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +.||+|+| +|.+|+.+.+.|.... .++..+ ++ .+.         +                               
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G-~~V~~~-d~-~~~---------~-------------------------------  134 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQVRIL-EQ-DDW---------D-------------------------------  134 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCC-CeEEEe-CC-Ccc---------h-------------------------------
Confidence            37899999 6999999999998764 333222 22 000         0                               


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHH--CCCCeEEeeCCCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK--GGAKKVVISAPSK  131 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~--~G~k~vvid~~~~  131 (296)
                       ++++.   ..++|+||+|+|.....+....+..  .|+  +|+|.+|-
T Consensus       135 -~~~~~---~~~aDlVilavP~~~~~~~~~~l~~l~~~~--iv~Dv~Sv  177 (374)
T PRK11199        135 -RAEDI---LADAGMVIVSVPIHLTEEVIARLPPLPEDC--ILVDLTSV  177 (374)
T ss_pred             -hHHHH---HhcCCEEEEeCcHHHHHHHHHHHhCCCCCc--EEEECCCc
Confidence             11111   2478999999999877766665433  345  88998773

>PRK06545 prephenate dehydrogenase; Validated

Probab=95.60  E-value=0.04  Score=51.75  Aligned_cols=91  Identities=20%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             EEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            8 KIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      ||+|+|+|.||..+++.|.+.. ++.+... +  .+......    ....+              +.  .   ...  .+
T Consensus         2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~-~--~~~~~~~~----a~~~~--------------~~--~---~~~--~~   53 (359)
T PRK06545          2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGY-D--PSAAQLAR----ALGFG--------------VI--D---ELA--AD   53 (359)
T ss_pred             eEEEEEeCHHHHHHHHHHHhcCCCeEEEEe-C--CCHHHHHH----HhcCC--------------CC--c---ccc--cC
Confidence            6999999999999999998754 4444332 2  22221111    00000              00  0   000  12


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHH----CCCCeEEeeCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK----GGAKKVVISAPSK  131 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~----~G~k~vvid~~~~  131 (296)
                      .++.   ..++|+||.|+|.....+.+.++..    .++  +|.|.++-
T Consensus        54 ~~~~---~~~aDlVilavP~~~~~~vl~~l~~~~l~~~~--ivtDv~Sv   97 (359)
T PRK06545         54 LQRA---AAEADLIVLAVPVDATAALLAELADLELKPGV--IVTDVGSV   97 (359)
T ss_pred             HHHH---hcCCCEEEEeCCHHHHHHHHHHHhhcCCCCCc--EEEeCccc
Confidence            2222   2578999999999876666666543    344  77776653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.55  E-value=0.017  Score=46.40  Aligned_cols=95  Identities=17%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .|+.|+|+|-+|+.++..|..+. ++-+.|..+  +.+....+.   +.++    +              ..+....-.+
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR--t~~ra~~l~---~~~~----~--------------~~~~~~~~~~   68 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR--TPERAEALA---EEFG----G--------------VNIEAIPLED   68 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES--SHHHHHHHH---HHHT----G--------------CSEEEEEGGG
T ss_pred             CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC--CHHHHHHHH---HHcC----c--------------cccceeeHHH
Confidence            68999999999999999999884 554445445  332211111   1111    0              0011221112


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC--eEEeeCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAP  129 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k--~vvid~~  129 (296)
                      ..+.   ..++|+||.|||.... ...+..++...+  ++++|.+
T Consensus        69 ~~~~---~~~~DivI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla  109 (135)
T PF01488_consen   69 LEEA---LQEADIVINATPSGMP-IITEEMLKKASKKLRLVIDLA  109 (135)
T ss_dssp             HCHH---HHTESEEEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred             HHHH---HhhCCeEEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence            2211   3579999999998755 333445555432  3889874

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.54  E-value=0.077  Score=49.20  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=25.0

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ||+||+|+|+|.+|..++..|..+. .++..+
T Consensus         1 ~~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~   31 (341)
T PRK08229          1 MMARICVLGAGSIGCYLGGRLAAAG-ADVTLI   31 (341)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcC-CcEEEE
Confidence            4579999999999999999998764 444444

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=95.46  E-value=0.045  Score=52.56  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---eeE--ECCE--
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TLL--FGEK--   77 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l~--~~~~--   77 (296)
                      .||+|+|+ |-||...++.+.+||+ ++++++... .+.+.++...  ..-.|++-    ...+..   .+.  ..+.  
T Consensus        58 KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~--~~f~p~~v----~v~d~~~~~~l~~~l~~~~~  130 (454)
T PLN02696         58 KPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQV--RKFKPKLV----AVRNESLVDELKEALADLDD  130 (454)
T ss_pred             cEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhcCCCC
Confidence            79999999 9999999999999986 999999876 5654333311  11112111    110000   000  0000  


Q ss_pred             EEEEEe-cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           78 PVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        78 ~i~~~~-~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .+.++. ..+..++ -...++|+|+.+...+.-..-.-.++++|. ++.+
T Consensus       131 ~~~vl~G~egl~~l-a~~~evDiVV~AIvG~aGL~pTl~AIkaGK-~VAL  178 (454)
T PLN02696        131 KPEIIPGEEGIVEV-ARHPEAVTVVTGIVGCAGLKPTVAAIEAGK-DIAL  178 (454)
T ss_pred             CcEEEECHHHHHHH-HcCCCCCEEEEeCccccchHHHHHHHHCCC-cEEE
Confidence            112222 1112222 112478999999988766666677889995 3444

>PLN02712 arogenate dehydrogenase

Probab=95.45  E-value=0.033  Score=56.56  Aligned_cols=90  Identities=18%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|+|.+|+.+++.|.+.. .+|++. ++....+ .+.     . +            |  +       ..+  .
T Consensus       369 ~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~-dr~~~~~-~a~-----~-~------------G--v-------~~~--~  416 (667)
T PLN02712        369 KLKIAIVGFGNFGQFLAKTMVKQG-HTVLAY-SRSDYSD-EAQ-----K-L------------G--V-------SYF--S  416 (667)
T ss_pred             CCEEEEEecCHHHHHHHHHHHHCc-CEEEEE-ECChHHH-HHH-----H-c------------C--C-------eEe--C
Confidence            479999999999999999998754 576655 4411111 000     0 0            0  0       011  1


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHH----HCCCCeEEeeCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL----KGGAKKVVISAPSK  131 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l----~~G~k~vvid~~~~  131 (296)
                      +.+++.  ...+|+||.|+|.....+.+..+.    +.|+  +++|.++-
T Consensus       417 ~~~el~--~~~aDvVILavP~~~~~~vi~~l~~~~lk~g~--ivvDv~Sv  462 (667)
T PLN02712        417 DADDLC--EEHPEVILLCTSILSTEKVLKSLPFQRLKRST--LFVDVLSV  462 (667)
T ss_pred             CHHHHH--hcCCCEEEECCChHHHHHHHHHHHHhcCCCCc--EEEECCCc
Confidence            233321  125799999999876666665543    2455  88887653

>PRK07680 late competence protein ComER; Validated

Probab=95.44  E-value=0.03  Score=50.45  Aligned_cols=91  Identities=12%  Similarity=0.146  Sum_probs=52.8

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCC--cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~--~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ||+|+|+|.+|..+++.|.+...  .+-+.+.++  +.+....+   ...+   .        +         +.+..  
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r--~~~~~~~~---~~~~---~--------g---------~~~~~--   54 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR--TPAKAYHI---KERY---P--------G---------IHVAK--   54 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC--CHHHHHHH---HHHc---C--------C---------eEEEC--
Confidence            69999999999999999887653  233455555  33221111   1101   0        0         11111  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~~  130 (296)
                      ++.+.   ..+.|+||.|++.....+.++.+.   ..+.  .|+|..+
T Consensus        55 ~~~~~---~~~aDiVilav~p~~~~~vl~~l~~~l~~~~--~iis~~a   97 (273)
T PRK07680         55 TIEEV---ISQSDLIFICVKPLDIYPLLQKLAPHLTDEH--CLVSITS   97 (273)
T ss_pred             CHHHH---HHhCCEEEEecCHHHHHHHHHHHHhhcCCCC--EEEEECC
Confidence            23332   247899999998876666655543   3343  7777654

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=95.44  E-value=0.057  Score=56.23  Aligned_cols=102  Identities=16%  Similarity=0.242  Sum_probs=57.4

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCC--------CcEEEEEecCCCChhhhhhccccccc-CCCCcCcceeeeCCceeEEC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDPFISTDYMTYMFKYDSV-HGQWKHNELKVKDEKTLLFG   75 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p--------~~elv~i~~~~~~~~~~a~~l~~~s~-~~~~~~~~v~~~~~~~l~~~   75 (296)
                      +.++|+|+|+|.+|+.++++|.++.        ++++++|.+....      ++...-. ...|. ...   ..  .   
T Consensus       464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~------~~~~~g~~~~~~~-~~~---~~--~---  528 (819)
T PRK09436        464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKM------LLDEHGIDLDNWR-EEL---AE--A---  528 (819)
T ss_pred             ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCcc------ccCCCCCCHHHHH-HHH---hh--c---
Confidence            4589999999999999999987542        5788888764111      1100000 00111 000   00  0   


Q ss_pred             CEEEEEEecCCCCC-CCcc---cCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           76 EKPVAVFGFRNPEE-IPWA---KTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        76 ~~~i~~~~~~d~~~-i~~~---~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                            ....+.+. +++.   ....|+|||||+.........+++++|+  -||++.
T Consensus       529 ------~~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~--~VVtaN  578 (819)
T PRK09436        529 ------GEPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGF--HVVTPN  578 (819)
T ss_pred             ------cCCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCC--EEEcCC
Confidence                  00000000 0000   1146899999998666666778999998  677654

>PLN02712 arogenate dehydrogenase

Probab=95.42  E-value=0.032  Score=56.69  Aligned_cols=89  Identities=17%  Similarity=0.325  Sum_probs=54.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||||+|+|.+|+.+++.|.++. .+|+++ ++ .+....+.     . +            |  +       ..+  .+
T Consensus        53 ~kIgIIG~G~mG~slA~~L~~~G-~~V~~~-dr-~~~~~~A~-----~-~------------G--v-------~~~--~d  100 (667)
T PLN02712         53 LKIAIIGFGNYGQFLAKTLISQG-HTVLAH-SR-SDHSLAAR-----S-L------------G--V-------SFF--LD  100 (667)
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEE-eC-CHHHHHHH-----H-c------------C--C-------EEe--CC
Confidence            68999999999999999998874 677665 33 12211110     0 0            0  1       011  13


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHH----HCCCCeEEeeCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHL----KGGAKKVVISAPSK  131 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l----~~G~k~vvid~~~~  131 (296)
                      ++++-  ..++|+||.|+|.....+.++.+.    +.|+  +|+|..+-
T Consensus       101 ~~e~~--~~~aDvViLavP~~~~~~vl~~l~~~~l~~g~--iVvDv~Sv  145 (667)
T PLN02712        101 PHDLC--ERHPDVILLCTSIISTENVLKSLPLQRLKRNT--LFVDVLSV  145 (667)
T ss_pred             HHHHh--hcCCCEEEEcCCHHHHHHHHHhhhhhcCCCCe--EEEECCCC
Confidence            33321  135899999999876666555442    3455  88887653

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.38  E-value=0.077  Score=46.32  Aligned_cols=32  Identities=25%  Similarity=0.574  Sum_probs=29.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|.|||.+|+.+++.|.+. ...+|+|+|.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~   55 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDP   55 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence            7999999999999999999987 4889999986

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.26  E-value=0.052  Score=49.05  Aligned_cols=136  Identities=13%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC--C-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRD--D-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p--~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||+|+|+|.+|..+++.|.++.  . .++ .+.++ ...+.. ..+  ...++              .       ....
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v-~v~~r-~~~~~~-~~l--~~~~g--------------~-------~~~~   57 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANVVKGEQI-TVSNR-SNETRL-QEL--HQKYG--------------V-------KGTH   57 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceE-EEECC-CCHHHH-HHH--HHhcC--------------c-------eEeC
Confidence            48999999999999999998764  1 333 34444 121111 111  00000              0       0111


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC-CCCeEEeeC-CCC---------C-CCeEEcccC--hhccCCCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG-GAKKVVISA-PSK---------D-APMFVVGVN--EKEYKPEL  149 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~-G~k~vvid~-~~~---------d-~~~~v~gvn--~~~l~~~~  149 (296)
                        ++.+.   ..++|+||.|++.....+.+..+... ...+++||. ++-         . ...++.++|  ......+.
T Consensus        58 --~~~e~---~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~  132 (279)
T PRK07679         58 --NKKEL---LTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSA  132 (279)
T ss_pred             --CHHHH---HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhccc
Confidence              23332   24789999999998777766655431 112378885 321         1 123555554  22222233


Q ss_pred             CeE-EcCCcchhhhHhHHHHHHhhcC
Q 022491          150 DIV-SNASCTTNCLAPLAKVIHDKFG  174 (296)
Q Consensus       150 ~iI-s~p~C~~tal~~~l~~L~~~~g  174 (296)
                      .++ .+..|.... .-.+.+|.+.+|
T Consensus       133 t~~~~~~~~~~~~-~~~v~~l~~~~G  157 (279)
T PRK07679        133 TAISPSKHATAEH-IQTAKALFETIG  157 (279)
T ss_pred             EEEeeCCCCCHHH-HHHHHHHHHhCC
Confidence            344 333332222 335566666666

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=95.25  E-value=0.04  Score=49.34  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=20.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      +||+|+|+|.+|..+++.|.+..
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~   26 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSN   26 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCC
Confidence            47999999999999999998764

>PRK06046 alanine dehydrogenase; Validated

Probab=95.24  E-value=0.04  Score=51.12  Aligned_cols=34  Identities=29%  Similarity=0.231  Sum_probs=31.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ..++||+|+|..|+.+++.+...+.++.+.|.++
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r  162 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR  162 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence            3689999999999999999988888999999987

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.20  E-value=0.046  Score=50.59  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |+..  +||+|+|+|.+|..++..|.... .++..+
T Consensus         1 ~~~~--m~I~iIG~G~mG~~ia~~L~~~G-~~V~~~   33 (328)
T PRK14618          1 MHHG--MRVAVLGAGAWGTALAVLAASKG-VPVRLW   33 (328)
T ss_pred             CCCC--CeEEEECcCHHHHHHHHHHHHCC-CeEEEE
Confidence            7765  58999999999999999998764 444433

>PRK08605 D-lactate dehydrogenase; Validated

Probab=95.19  E-value=0.043  Score=51.02  Aligned_cols=30  Identities=33%  Similarity=0.522  Sum_probs=23.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++|||+|+|.||+.+++.|...-.+++.+.
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~  176 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAY  176 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence            589999999999999999843224676554

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=95.18  E-value=0.1  Score=46.85  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=32.2

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |.++|-|.|.|++|.+.+|.+..+|++|+|+.-..
T Consensus         1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv~   35 (350)
T COG3804           1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH   35 (350)
T ss_pred             CCceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence            44789999999999999999999999999998876

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.18  E-value=0.035  Score=50.19  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCC---cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~---~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||+|+|+|.+|..+++.|.+...   .++..++.+  ..... ..+  ...+   .               +  +.+..
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~--~~~~~-~~l--~~~~---~---------------~--~~~~~   56 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS--KNEHF-NQL--YDKY---P---------------T--VELAD   56 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC--cHHHH-HHH--HHHc---C---------------C--eEEeC
Confidence            589999999999999999887542   455555432  21110 101  0100   0               0  00111


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~  129 (296)
                        +..+.   ..+.|+||.|+|.....+.+.++.   ..+.  .+|+..
T Consensus        57 --~~~e~---~~~aDvVilavpp~~~~~vl~~l~~~l~~~~--~ivS~~   98 (277)
T PRK06928         57 --NEAEI---FTKCDHSFICVPPLAVLPLLKDCAPVLTPDR--HVVSIA   98 (277)
T ss_pred             --CHHHH---HhhCCEEEEecCHHHHHHHHHHHHhhcCCCC--EEEEEC
Confidence              22222   247899999999887777666553   3454  677654

>PLN02688 pyrroline-5-carboxylate reductase

Probab=95.15  E-value=0.068  Score=47.75  Aligned_cols=33  Identities=18%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCC---cEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~---~elv~i~~~   39 (296)
                      +|||++|+|.+|..+++.|.+...   .++...+++
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r   36 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS   36 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence            479999999999999999887542   254444254

>PRK09414 glutamate dehydrogenase; Provisional

Probab=95.12  E-value=0.14  Score=49.35  Aligned_cols=102  Identities=15%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh---h--hhhhcccccccC-CCCcCcceeeeCCceeEECCEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST---D--YMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEKPVA   80 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~---~--~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~~~~~i~   80 (296)
                      .||+|.|||.+|+.+++.|.+.. ++|++|+|.+...   +  +...++++.... +.+. +.   ...  .   +  ..
T Consensus       233 ~rVaIqGfGnVG~~~A~~L~~~G-akVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~-~~---~~~--~---~--~~  300 (445)
T PRK09414        233 KRVVVSGSGNVAIYAIEKAQQLG-AKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRIS-EY---AEE--F---G--AE  300 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchh-hh---hhh--c---C--Ce
Confidence            79999999999999999998764 9999998842211   0  000111111110 1111 00   000  0   0  00


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCC-ccCHHHHHHHHHCCCCeEEe
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~-~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .   .+.+++ | ..++||++.|+.. ..+.+.+..+.+.+|| +|+
T Consensus       301 ~---i~~~~i-~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv  341 (445)
T PRK09414        301 Y---LEGGSP-W-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVA  341 (445)
T ss_pred             e---cCCccc-c-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence            1   134454 5 3689999999875 4455667777766785 444

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.03  E-value=0.053  Score=49.72  Aligned_cols=31  Identities=23%  Similarity=0.316  Sum_probs=24.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..+.+.|.+.. .++ .+.++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g-~~V-~~~~r   32 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNG-HDV-TLWAR   32 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEE-EEEEC
Confidence            58999999999999999998754 444 33344

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=94.94  E-value=0.09  Score=41.16  Aligned_cols=82  Identities=20%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             EEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            8 KIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         8 ~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +|+|+|+    +..|..+++.|.++. .++..||-. .           ++..                   |  ++.+.
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~-~-----------~~i~-------------------G--~~~y~   47 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPK-G-----------GEIL-------------------G--IKCYP   47 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTT-C-----------SEET-------------------T--EE-BS
T ss_pred             EEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCC-c-----------eEEC-------------------c--EEeec
Confidence            6899995    778999999999854 788888644 1           1110                   1  01221


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                        +.++++   ..+|+++.|+|.....+.++++.+.|++.+++-.
T Consensus        48 --sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~   87 (116)
T PF13380_consen   48 --SLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQP   87 (116)
T ss_dssp             --SGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-T
T ss_pred             --cccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEc
Confidence              222222   4789999999999999999999999999887743

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=94.90  E-value=0.085  Score=54.78  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCC---------CcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p---------~~elv~i~~~   39 (296)
                      ++++|+|+|+|.+|+.++++|.++.         ++++++|.+.
T Consensus       457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s  500 (810)
T PRK09466        457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS  500 (810)
T ss_pred             ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence            4599999999999999999986532         5888999865

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.84  E-value=0.052  Score=49.82  Aligned_cols=26  Identities=27%  Similarity=0.294  Sum_probs=22.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVEL   33 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~el   33 (296)
                      +||+|+|+|.+|..+.+.|.... .++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G-~~V   30 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANG-HRV   30 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCC-CEE
Confidence            68999999999999999998764 344

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.84  E-value=0.036  Score=44.95  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=26.9

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+ |.+|..++-.|...+-..-+.+.|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~   34 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI   34 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEecc
Confidence            48999999 9999999999988876554555565

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=94.73  E-value=0.067  Score=48.85  Aligned_cols=31  Identities=29%  Similarity=0.420  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|.|.+|..+++.|.++. .++ .+.++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G-~~V-~v~d~   32 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQG-HQL-QVFDV   32 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCC-CeE-EEEcC
Confidence            48999999999999999998775 454 34454

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=94.67  E-value=0.074  Score=49.31  Aligned_cols=34  Identities=26%  Similarity=0.176  Sum_probs=30.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ..++||+|+|..|+..++.+.....++-+.|.++
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r  161 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR  161 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC
Confidence            3689999999999999999888777899999887

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.54  E-value=0.14  Score=46.85  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=25.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..+..++..+++.+ |.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~-D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLF-DI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEE-EC
Confidence            699999999999999998887653355544 54

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=94.47  E-value=0.094  Score=47.17  Aligned_cols=92  Identities=20%  Similarity=0.186  Sum_probs=55.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +|||++|+|.+|+.+++-|.+.+  .-+.+.+.++  +.+...++   .+.|+              .    .   .  .
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~~l---~~~~g--------------~----~---~--~   53 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRAAL---AAEYG--------------V----V---T--T   53 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHHHH---HHHcC--------------C----c---c--c
Confidence            68999999999999999999877  3356666666  33221111   22221              0    0   0  0


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+.++.   ..+.|+||.|.-.....+.+.++...-..++|||..
T Consensus        54 ~~~~~~---~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISia   95 (266)
T COG0345          54 TDNQEA---VEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIA   95 (266)
T ss_pred             CcHHHH---HhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEe
Confidence            122222   257899999998877667666664311123788754

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=94.43  E-value=0.068  Score=49.67  Aligned_cols=29  Identities=28%  Similarity=0.423  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++|||+|+|.||+.+++.|.... +++.+.
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~  175 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFG-ATITAY  175 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            58999999999999999998754 677665

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=94.43  E-value=0.13  Score=47.10  Aligned_cols=30  Identities=30%  Similarity=0.572  Sum_probs=24.3

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||||+|+|.+|..+++.|.++. .++.. .++
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g-~~V~~-~dr   31 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRG-HDCVG-YDH   31 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCC-CEEEE-EEC
Confidence            7999999999999999998764 56654 444

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK07574 formate dehydrogenase; Provisional

Probab=94.39  E-value=0.064  Score=50.89  Aligned_cols=30  Identities=40%  Similarity=0.516  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|||+|+|.||+.+++.|.... +++.+.+
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG-~~V~~~d  222 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFD-VKLHYTD  222 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence            57999999999999999998753 7776653

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.38  E-value=0.1  Score=45.45  Aligned_cols=28  Identities=21%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             eEEEEEe-cCHHHHHHHHHHHcCCCcEEEE
Q 022491            7 IKIGING-FGRIGRLVARVALQRDDVELVA   35 (296)
Q Consensus         7 i~vgI~G-~G~iG~~l~r~l~~~p~~elv~   35 (296)
                      |||+|+| +|.+|..+++.|.+.. .++..
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v   29 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAG-NKIII   29 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCC-CEEEE
Confidence            3799998 6999999999998764 34443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.35  E-value=0.13  Score=50.50  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||||+|+|.+|..++..+..+. .++. +.|+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G-~~V~-v~D~   35 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAG-IDVA-VFDP   35 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEeC
Confidence            58999999999999999998875 4543 4455

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.19  E-value=0.086  Score=49.05  Aligned_cols=31  Identities=42%  Similarity=0.573  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.|.... +++.+. ++
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G-~~V~~~-d~  181 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFG-MRILYY-SR  181 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEE-CC
Confidence            68999999999999999998664 676554 44

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=94.15  E-value=0.19  Score=47.96  Aligned_cols=93  Identities=18%  Similarity=0.251  Sum_probs=53.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||-|+|+|-+|..+++.|.+++--++..+| +... +..+|..+      +    +.+       +.        +  .
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaN-RT~erA~~La~~~------~----~~~-------~~--------l--~  230 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKITIAN-RTLERAEELAKKL------G----AEA-------VA--------L--E  230 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEEEEEc-CCHHHHHHHHHHh------C----Cee-------ec--------H--H
Confidence            5799999999999999999999754444444 4122 23333221      1    100       10        1  1


Q ss_pred             CCCCCCcccCCCcEEEEccCCc---cCHHHHHHHHHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVF---TDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~---~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +..+.   ..++|+||.||+..   ...+.++.+++.....++||.+-
T Consensus       231 el~~~---l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiav  275 (414)
T COG0373         231 ELLEA---LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAV  275 (414)
T ss_pred             HHHHh---hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecC
Confidence            11111   35899999998763   23445555555332237788653

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.05  E-value=0.12  Score=47.29  Aligned_cols=30  Identities=30%  Similarity=0.458  Sum_probs=24.5

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||||+|+|.+|..+++.|.++. .+|+ +.++
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g-~~v~-v~dr   31 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDG-HEVV-GYDV   31 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCC-CEEE-EEEC
Confidence            7999999999999999998764 5665 4455

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.01  E-value=0.13  Score=47.72  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++..+....-.+ +.+.|.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi   38 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI   38 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence            68999999999999988877665446 555565

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=93.88  E-value=0.19  Score=51.78  Aligned_cols=32  Identities=31%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..+++.|.+.. ..++.. .++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~-~d~   36 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVA-VDR   36 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEE-EEC
Confidence            68999999999999999998764 235444 454

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=93.85  E-value=0.19  Score=45.02  Aligned_cols=29  Identities=21%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             EEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            8 KIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +|.|.|+ |.+|+.+++.|.+.. .++.++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~   30 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAAS-VPFLVAS   30 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCC-CcEEEEe
Confidence            4789999 999999999998764 5665554

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.83  E-value=0.33  Score=44.57  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=23.4

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++||+|+|+|.+|..+...|.+.. .++..+
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~   34 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFL   34 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC-CeEEEE
Confidence            379999999999999999988753 344433

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.71  E-value=0.12  Score=46.87  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=24.2

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||||+|+|.+|..+++.|..+. .++.. .++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G-~~V~~-~dr   30 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAG-YQLHV-TTI   30 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCC-CeEEE-EcC
Confidence            5899999999999999998764 56654 454

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN00203 glutamyl-tRNA reductase

Probab=93.70  E-value=0.2  Score=49.45  Aligned_cols=32  Identities=16%  Similarity=0.402  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.+|+.+++.|..++ ++-+.|.++
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~G-~~~V~V~nR  298 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSKG-CTKMVVVNR  298 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhCC-CCeEEEEeC
Confidence            68999999999999999998876 433444444

>PRK08655 prephenate dehydrogenase; Provisional

Probab=93.54  E-value=0.2  Score=48.40  Aligned_cols=89  Identities=18%  Similarity=0.247  Sum_probs=51.7

Q ss_pred             eEEEEEe-cCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G-~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |||+|+| +|.+|+.+++.|.+.. .++..+ ++  +.+.....   ...+            |  +       ...  .
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G-~~V~v~-~r--~~~~~~~~---a~~~------------g--v-------~~~--~   50 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKG-FEVIVT-GR--DPKKGKEV---AKEL------------G--V-------EYA--N   50 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCC-CEEEEE-EC--ChHHHHHH---HHHc------------C--C-------eec--c
Confidence            3799998 5999999999998765 454443 34  22110000   0000            0  1       011  1


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~~  130 (296)
                      ++++.   ..++|+||.|+|.....+.+..+.   ..|+  +++|.++
T Consensus        51 ~~~e~---~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~--iViDvsS   93 (437)
T PRK08655         51 DNIDA---AKDADIVIISVPINVTEDVIKEVAPHVKEGS--LLMDVTS   93 (437)
T ss_pred             CHHHH---hccCCEEEEecCHHHHHHHHHHHHhhCCCCC--EEEEccc
Confidence            22222   247899999999876666555543   3555  8888776

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.54  E-value=0.43  Score=39.91  Aligned_cols=88  Identities=24%  Similarity=0.277  Sum_probs=54.6

Q ss_pred             eEEEEEecCH-HHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGR-IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~-iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||.|+|+|. +|..+++.|.++. .++..+ .+  ..+         .                 +             
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~-~r--~~~---------~-----------------l-------------   81 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVC-HS--KTK---------N-----------------L-------------   81 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCC-CEEEEE-EC--Cch---------h-----------------H-------------
Confidence            6899999986 5888999998875 353333 22  100         0                 0             


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-----CCeEEcccChhccC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-----APMFVVGVNEKEYK  146 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-----~~~~v~gvn~~~l~  146 (296)
                       .+.    ..++|+||.||+...  -.-+..++.|.  ++||.+...     ...+.-+++.+.++
T Consensus        82 -~~~----l~~aDiVIsat~~~~--ii~~~~~~~~~--viIDla~prdvd~~~~~~~G~~d~~~~~  138 (168)
T cd01080          82 -KEH----TKQADIVIVAVGKPG--LVKGDMVKPGA--VVIDVGINRVPDKSGGKLVGDVDFESAK  138 (168)
T ss_pred             -HHH----HhhCCEEEEcCCCCc--eecHHHccCCe--EEEEccCCCcccccCCCeeCCcCHHHHH
Confidence             011    247899999999743  23334566676  899986542     22455667766554

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.51  E-value=0.12  Score=43.52  Aligned_cols=30  Identities=37%  Similarity=0.627  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+++++.+..-. +++.+..
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d   66 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFG-MRVIGYD   66 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT--EEEEEE
T ss_pred             CEEEEEEEcCCcCeEeeeeecCC-ceeEEec
Confidence            68999999999999999999764 7877775

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=93.51  E-value=0.14  Score=49.13  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.+|+.+++.|..++-.++. +.++
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~r  212 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKIL-IANR  212 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEE-EEeC
Confidence            5899999999999999999887534444 4444

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.49  E-value=0.29  Score=43.52  Aligned_cols=116  Identities=13%  Similarity=0.039  Sum_probs=57.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC---------C-CcEEEEEecCC-CChhhhhhcccccccCCCCcCcceeeeCCcee-EE
Q 022491            7 IKIGINGFGRIGRLVARVALQR---------D-DVELVAVNDPF-ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTL-LF   74 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~---------p-~~elv~i~~~~-~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l-~~   74 (296)
                      .||.|+|+|-+|.++++.|...         + .+++.-+ |.. -+...+.+.+.+.+.-|+.+ ..+..+.   + .+
T Consensus        12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lv-D~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~~r---i~~~   86 (244)
T TIGR03736        12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVY-DDDTVSEANVGRQAFYPADVGQNK-AIVLVNR---LNQA   86 (244)
T ss_pred             CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEE-CCCEEccchhhcccCChhHCCcHH-HHHHHHH---HHhc
Confidence            7899999999999999999753         2 2344433 431 12222222221222222222 1111000   0 11


Q ss_pred             CCEEEEEEec-CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC--CeEEeeCCC
Q 022491           75 GEKPVAVFGF-RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA--KKVVISAPS  130 (296)
Q Consensus        75 ~~~~i~~~~~-~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~--k~vvid~~~  130 (296)
                      ++..+..+.. .+++++   ..+.|+||+|+....++....+....+-  .+..+|+..
T Consensus        87 ~~~~i~a~~~~~~~~~~---~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn  142 (244)
T TIGR03736        87 MGTDWTAHPERVERSST---LHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGN  142 (244)
T ss_pred             cCceEEEEEeeeCchhh---hcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccC
Confidence            1222222221 122222   2478999999999988877655443311  136666654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.25  E-value=0.2  Score=46.15  Aligned_cols=33  Identities=21%  Similarity=0.306  Sum_probs=25.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++-.|...+-..-+.+.|.
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~   36 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDV   36 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            589999999999999998887765543444454

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.21  E-value=0.18  Score=46.44  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=25.5

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||+|+|+|.+|..++-+|...+-+.-..+.|.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   32 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            69999999999999998888776654445555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=93.20  E-value=0.21  Score=47.22  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G-~~V~~~  145 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALG-IKTLLC  145 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 777655

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.15  E-value=0.68  Score=42.74  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=26.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++-+|...+-+.-+.+.|.
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~   39 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDI   39 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            699999999999999999988876644445554

>PTZ00117 malate dehydrogenase; Provisional

Probab=93.06  E-value=0.5  Score=43.68  Aligned_cols=32  Identities=38%  Similarity=0.471  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..+..++..++-.+ +.+.|.
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di   37 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGD-VVLYDV   37 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence            68999999999999998888776445 455555

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.06  E-value=0.16  Score=46.21  Aligned_cols=31  Identities=26%  Similarity=0.430  Sum_probs=24.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++..+.... .++... ++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G-~~V~l~-d~   35 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAG-YDVLLN-DV   35 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CeEEEE-eC
Confidence            68999999999999999988764 455443 44

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=93.02  E-value=0.22  Score=39.81  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             EEEEec-CHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhh
Q 022491            9 IGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMT   47 (296)
Q Consensus         9 vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a   47 (296)
                      |+|.|+ |-||+..++.+.+|| +|+++++... ++.+.+.
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~-~n~~~L~   40 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG-SNIEKLA   40 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES-STHHHHH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC-CCHHHHH
Confidence            689999 999999999999998 4999999986 6665443

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.00  E-value=0.21  Score=47.81  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=23.3

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ||||+|+|++|..++..|.+.. .++.++
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G-~~V~~~   29 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLG-HEVTGV   29 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcC-CeEEEE
Confidence            7999999999999999998764 455555

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN00016 RNA-binding protein; Provisional

Probab=92.82  E-value=0.3  Score=45.93  Aligned_cols=32  Identities=25%  Similarity=0.226  Sum_probs=26.7

Q ss_pred             CeeEEEEE----ec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGIN----GF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~----G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |++||.|.    |+ |++|+.+++.|.+.. .++.++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~   87 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFT   87 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEe
Confidence            45789999    99 999999999998875 5666665

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.79  E-value=0.19  Score=46.35  Aligned_cols=99  Identities=18%  Similarity=0.223  Sum_probs=54.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||+|+|+|..|..|+..|.++. ++.+ |  .+  +.+.+.. +..+...++|- ..+.      +.   ..+..  ..
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~l-w--~r--~~~~~~~-i~~~~~N~~yL-p~i~------lp---~~l~a--t~   63 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRL-W--GR--DEEIVAE-INETRENPKYL-PGIL------LP---PNLKA--TT   63 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEE-E--ec--CHHHHHH-HHhcCcCcccc-CCcc------CC---ccccc--cc
Confidence            68999999999999999998764 3433 2  22  2222222 11111112111 0000      10   01111  12


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISA  128 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~  128 (296)
                      |.++.   ..++|+++.+.|+..-++.+.++   +..+.  .++++
T Consensus        64 Dl~~a---~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~--~iv~~  104 (329)
T COG0240          64 DLAEA---LDGADIIVIAVPSQALREVLRQLKPLLLKDA--IIVSA  104 (329)
T ss_pred             CHHHH---HhcCCEEEEECChHHHHHHHHHHhhhccCCC--eEEEE
Confidence            44433   35699999999998888777664   44555  45544

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=92.77  E-value=0.23  Score=47.05  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G-~~V~~~  145 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLG-WKVLVC  145 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 676554

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=92.68  E-value=0.22  Score=45.37  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEE
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELV   34 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv   34 (296)
                      |||++|.|.+|..+++.|.+.. .++.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G-~~v~   27 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAG-HQLH   27 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCC-CeEE
Confidence            7999999999999999998775 4554

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=92.68  E-value=0.27  Score=45.71  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=24.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.+|+.+++.|.... ++++..
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~   46 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVG   46 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCC-CEEEEE
Confidence            68999999999999999998764 566543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.61  E-value=0.27  Score=44.54  Aligned_cols=29  Identities=14%  Similarity=0.243  Sum_probs=22.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||+|+|+|.+|..++..+.++. .++..+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G-~~V~l~   32 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHG-FDVTIY   32 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence            58999999999999999988764 444333

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=92.54  E-value=0.44  Score=46.22  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=58.2

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      .+|+|+|+    |..|..+++.|.+++. =++..||-. .           +.+++                     +++
T Consensus         8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~-~-----------~~i~G---------------------~~~   54 (447)
T TIGR02717         8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPK-A-----------GEILG---------------------VKA   54 (447)
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCC-C-----------CccCC---------------------ccc
Confidence            57999999    6789999999998763 256666522 1           11111                     112


Q ss_pred             EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +.  +.++++   ..+|+++.|+|.....+.++++.++|+|.+++
T Consensus        55 ~~--sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi   94 (447)
T TIGR02717        55 YP--SVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV   94 (447)
T ss_pred             cC--CHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence            21  344553   47899999999999999999999999997765

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=92.53  E-value=0.18  Score=48.41  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.+|+.+++.|...+ ++-+.+.++
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r  214 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR  214 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence            58999999999999999998765 433344444

>PLN02602 lactate dehydrogenase

Probab=92.48  E-value=0.22  Score=46.69  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=25.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++-.|...+-..-..+.|.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi   70 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV   70 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            599999999999999998887765544444454

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=92.39  E-value=0.3  Score=47.86  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=28.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |....+.+||++|.|.+|..+++.|.++. ++|. |.++
T Consensus         1 ~~~~~~~~IG~IGLG~MG~~mA~nL~~~G-~~V~-V~NR   37 (493)
T PLN02350          1 MASAALSRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNR   37 (493)
T ss_pred             CCCCCCCCEEEEeeHHHHHHHHHHHHhCC-CeEE-EECC
Confidence            44444578999999999999999999886 5554 4455

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=92.36  E-value=1.1  Score=41.50  Aligned_cols=30  Identities=17%  Similarity=0.227  Sum_probs=24.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .||||+|+|.+|..+++.|.... ++++...
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG-~~Viv~~   33 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSG-LNVIVGL   33 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCC-CeEEEEE
Confidence            57999999999999999998765 5554333

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK14982 acyl-ACP reductase; Provisional

Probab=92.29  E-value=0.17  Score=47.13  Aligned_cols=89  Identities=20%  Similarity=0.238  Sum_probs=50.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCc-EEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~-elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      .+|.|+|+ |.||++++|.|.++..+ +++.++ +  +...+ +.+  ...   +.       .+ .+         .  
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~-R--~~~rl-~~L--a~e---l~-------~~-~i---------~--  207 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVA-R--QQERL-QEL--QAE---LG-------GG-KI---------L--  207 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEc-C--CHHHH-HHH--HHH---hc-------cc-cH---------H--
Confidence            58999999 99999999999864323 454443 3  22111 111  110   00       00 00         0  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +.++.   ..++|+||.+++.......-+..++.++  +++|.+
T Consensus       208 -~l~~~---l~~aDiVv~~ts~~~~~~I~~~~l~~~~--~viDiA  246 (340)
T PRK14982        208 -SLEEA---LPEADIVVWVASMPKGVEIDPETLKKPC--LMIDGG  246 (340)
T ss_pred             -hHHHH---HccCCEEEECCcCCcCCcCCHHHhCCCe--EEEEec
Confidence             11211   2579999999987443223334557777  888864

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=92.22  E-value=0.36  Score=44.14  Aligned_cols=30  Identities=37%  Similarity=0.616  Sum_probs=24.1

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||||+|+|.+|..+++.|.+.. .++.. .++
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g-~~v~v-~dr   31 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGG-HEVVG-YDR   31 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCC-CeEEE-EEC
Confidence            7999999999999999998764 55544 454

>PTZ00325 malate dehydrogenase; Provisional

Probab=92.14  E-value=1.1  Score=41.63  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=25.9

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |.||+|+|+ |.+|..++..|...+...-+.+.|.
T Consensus         8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            369999999 9999999998887665544444454

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.11  E-value=0.56  Score=42.56  Aligned_cols=29  Identities=17%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |||+|+|+|.+|..+...|.+.. .++..+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~   29 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFL   29 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CceEEE
Confidence            47999999999999999998764 344444

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=92.10  E-value=0.31  Score=44.81  Aligned_cols=30  Identities=33%  Similarity=0.524  Sum_probs=25.1

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCc-EEEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAV   36 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~-elv~i   36 (296)
                      +||+|+|+ |++|..++..|...+.. +++.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lv   32 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLI   32 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEE
Confidence            48999999 99999999999987754 56665

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.01  E-value=0.66  Score=39.86  Aligned_cols=31  Identities=26%  Similarity=0.542  Sum_probs=26.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++++|+|+|.+|+.+++.|.+.. .+++ +.|.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~   59 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI   59 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence            68999999999999999998875 6777 5555

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.92  E-value=0.38  Score=44.21  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=25.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+|++|..++..|...+-...+.+.|+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~   33 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDI   33 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            379999999999999999988765444445555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.89  E-value=0.41  Score=45.14  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcC
Q 022491            6 KIKIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      ++||+|+|+|..|..++..|...
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n   33 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGEN   33 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc
Confidence            36899999999999999999865

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=91.88  E-value=0.33  Score=44.98  Aligned_cols=33  Identities=18%  Similarity=0.132  Sum_probs=28.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+++|+|+|..|+..++.|.....++-+.|.++
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R  162 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWAR  162 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence            589999999999999999975445888888877

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.82  E-value=0.42  Score=43.29  Aligned_cols=29  Identities=28%  Similarity=0.276  Sum_probs=22.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||+|+|+|.+|..++..|..+. .++..+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G-~~V~~~   30 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSG-FQTTLV   30 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCC-CcEEEE
Confidence            47999999999999999988764 444433

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.81  E-value=1  Score=40.65  Aligned_cols=30  Identities=33%  Similarity=0.439  Sum_probs=23.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||+|+|+|.+|..++..|.+.. .++..+.
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~   30 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAG-HDVTLVA   30 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            37999999999999999988764 3554443

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.60  E-value=0.44  Score=43.70  Aligned_cols=29  Identities=31%  Similarity=0.402  Sum_probs=24.0

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCc-EEEEE
Q 022491            8 KIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~-elv~i   36 (296)
                      ||+|+|+|.+|+.++..|...+-. +++.+
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~   31 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLI   31 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            799999999999999999887654 55444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=91.48  E-value=0.69  Score=43.91  Aligned_cols=30  Identities=33%  Similarity=0.566  Sum_probs=25.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||.|.|+ |++|+.+++.|.++. .+++++.
T Consensus        61 ~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~   91 (390)
T PLN02657         61 VTVLVVGATGYIGKFVVRELVRRG-YNVVAVA   91 (390)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEE
Confidence            68999999 999999999998875 5666664

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=91.42  E-value=1.1  Score=40.41  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=21.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCc
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDV   31 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~   31 (296)
                      -.|||+|+ |-||..+.|.|..|-..
T Consensus       168 atvaivGa~G~Ia~~Iar~la~~~~~  193 (351)
T COG5322         168 ATVAIVGATGDIASAIARWLAPKVGV  193 (351)
T ss_pred             CeEEEecCCchHHHHHHHHhccccCE
Confidence            36999999 99999999999877543

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.34  E-value=0.42  Score=45.77  Aligned_cols=31  Identities=13%  Similarity=0.302  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.+|+.+++.+.... ++++. .+.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~  233 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV  233 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence            48999999999999999988775 46544 444

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=91.26  E-value=0.92  Score=41.78  Aligned_cols=30  Identities=30%  Similarity=0.439  Sum_probs=23.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCc-EEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~-elv~i   36 (296)
                      +||+|+|+|.+|..++-+|.+.+-. |++-+
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~Li   31 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLI   31 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEE
Confidence            4899999999999999999776644 44433

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=91.10  E-value=0.81  Score=42.37  Aligned_cols=105  Identities=22%  Similarity=0.157  Sum_probs=54.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHc----CCC----cEEEEEecCCCCh--hhhhhcccccccCCCCcCcceeeeCCceeEEC
Q 022491            6 KIKIGINGFGRIGRLVARVALQ----RDD----VELVAVNDPFIST--DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFG   75 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~----~p~----~elv~i~~~~~~~--~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~   75 (296)
                      ++||+|+|.|..|..+++++.+    +|.    ++. ++.......  +.+...  +.+.|-     .++.-.|..+.-|
T Consensus        21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrm-wv~ee~i~~~~~~L~ei--IN~~he-----N~KYlpg~~lP~N   92 (372)
T KOG2711|consen   21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRM-WVFEEEINGEAEKLTEI--INSRHE-----NVKYLPGIKLPEN   92 (372)
T ss_pred             ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeE-EEeccccCChhHHHHHH--hccccc-----cccccCCccCCCC
Confidence            4899999999999999998864    332    211 222110111  111111  123331     1111111112111


Q ss_pred             CEEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeC
Q 022491           76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISA  128 (296)
Q Consensus        76 ~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~  128 (296)
                           +....|..+.-   .+.|+++++.||.......+++   ++.++  ..||+
T Consensus        93 -----vvAv~dl~ea~---~dADilvf~vPhQf~~~ic~~l~g~vk~~~--~aISL  138 (372)
T KOG2711|consen   93 -----VVAVPDLVEAA---KDADILVFVVPHQFIPRICEQLKGYVKPGA--TAISL  138 (372)
T ss_pred             -----eEecchHHHHh---ccCCEEEEeCChhhHHHHHHHHhcccCCCC--eEEEe
Confidence                 11112343432   3789999999998887776665   45666  55665

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.01  E-value=1.6  Score=42.52  Aligned_cols=90  Identities=20%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .||.|+|+|.+|.++++.|.++. .+++.+ +. .+......+.   .   .+.      ..|  +       .++....
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~-d~-~~~~~~~~~~---~---~l~------~~g--v-------~~~~~~~   72 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELG-ARVTVV-DD-GDDERHRALA---A---ILE------ALG--A-------TVRLGPG   72 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC-CchhhhHHHH---H---HHH------HcC--C-------EEEECCC
Confidence            58999999999999999998876 565444 43 1211000000   0   000      001  1       1221112


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      ++ .   ..++|+||.++|.--....+..+.+.|.  .++
T Consensus        73 ~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~  106 (480)
T PRK01438         73 PT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVW  106 (480)
T ss_pred             cc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eec
Confidence            22 1   2468999999998666677777778887  444

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=90.96  E-value=0.63  Score=43.10  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=26.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.+|+.+++.|.... ++++..+++
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G-~~ViV~~r~   48 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSG-VEVVVGVRP   48 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCc-CEEEEEECc
Confidence            58999999999999999998764 777665443

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=90.94  E-value=0.78  Score=41.89  Aligned_cols=85  Identities=18%  Similarity=0.149  Sum_probs=57.2

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +-||-|.|. |.+|+.+++.|.+.+.-.+..||-.  ..        ++...                   |  ++.+. 
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~--~~--------~~~v~-------------------G--~~~y~-   55 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPG--KG--------GTTVL-------------------G--LPVFN-   55 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCC--CC--------CCeEe-------------------C--eeccC-
Confidence            368999999 9999999999987653344455421  10        01111                   0  11222 


Q ss_pred             CCCCCCCcccCC--CcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           85 RNPEEIPWAKTG--AEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        85 ~d~~~i~~~~~~--~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                       +.++++   ..  +|+++.++|.....+.++++.++|+|.++|
T Consensus        56 -sv~dlp---~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI   95 (291)
T PRK05678         56 -TVAEAV---EATGANASVIYVPPPFAADAILEAIDAGIDLIVC   95 (291)
T ss_pred             -CHHHHh---hccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence             334443   23  899999999999999999999999997655

>PRK14030 glutamate dehydrogenase; Provisional

Probab=90.85  E-value=1.5  Score=42.30  Aligned_cols=104  Identities=16%  Similarity=0.272  Sum_probs=59.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh--------hhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST--------DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~--------~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      .||+|=|+|.+|..+++.|.+. ..++++|+|.....        +.+.+++.+...++... ..  ...    .+.+. 
T Consensus       229 ~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga-  299 (445)
T PRK14030        229 KTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS-  299 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC-
Confidence            6899999999999999999876 49999987652221        11111221111111000 00  000    11111 


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEcc-CCccCHHHHHHHHHCCCCeEEe
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at-~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                       ...   +.+++ | ..++|+.+-|. +...+.+.++.+.+.+|| +|+
T Consensus       300 -~~i---~~~~~-~-~~~cDVliPcAl~n~I~~~na~~l~~~~ak-~V~  341 (445)
T PRK14030        300 -TFF---AGKKP-W-EQKVDIALPCATQNELNGEDADKLIKNGVL-CVA  341 (445)
T ss_pred             -EEc---CCccc-e-eccccEEeeccccccCCHHHHHHHHHcCCe-EEE
Confidence             111   34454 6 36899988765 456667778888888886 444

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=90.82  E-value=0.57  Score=45.05  Aligned_cols=29  Identities=14%  Similarity=0.297  Sum_probs=23.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|+|+|+|.+|+.+++.+.... ++++.+
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~  241 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVT  241 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            57999999999999999998775 564443

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=90.72  E-value=0.7  Score=42.45  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|++|..++..+..+...++ .+.|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~V-vlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADL-VLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeE-EEEeC
Confidence            489999999999999999888654464 44454

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.42  E-value=1.3  Score=41.34  Aligned_cols=31  Identities=26%  Similarity=0.317  Sum_probs=24.6

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +|.|+|+|.||...+.++...+--+++.+ |.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~  201 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR  201 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC
Confidence            69999999999988777777776666665 54

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.41  E-value=0.43  Score=44.50  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=21.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDD   30 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~   30 (296)
                      +||+|+|+|.+|..+...|.++..
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g~   31 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRGP   31 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC
Confidence            789999999999999999987653

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=90.38  E-value=0.34  Score=47.69  Aligned_cols=29  Identities=21%  Similarity=0.390  Sum_probs=23.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||||+|+|.+|..++..+..+. .+++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG-~~V~l~   34 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAG-HQVLLY   34 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCC-CeEEEE
Confidence            57999999999999999988764 555443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK05442 malate dehydrogenase; Provisional

Probab=90.36  E-value=0.67  Score=43.03  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=21.7

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCC
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRD   29 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p   29 (296)
                      |-.+  .||+|+|+ |.+|..++-.|....
T Consensus         1 ~~~~--~KV~IiGaaG~VG~~~a~~l~~~~   28 (326)
T PRK05442          1 MKAP--VRVAVTGAAGQIGYSLLFRIASGD   28 (326)
T ss_pred             CCCC--cEEEEECCCcHHHHHHHHHHHhhh
Confidence            4444  79999999 999999988777543

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=90.27  E-value=1.4  Score=39.83  Aligned_cols=29  Identities=31%  Similarity=0.383  Sum_probs=22.0

Q ss_pred             EEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491           11 INGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus        11 I~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |.|+ |++|+.+++.|.++++..-|.+.+.
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~   31 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR   31 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence            6789 9999999999999886433344444

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=90.23  E-value=0.72  Score=42.72  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRD   29 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p   29 (296)
                      .||+|+|+ |.+|..++-.|....
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~   26 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGE   26 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcc
Confidence            69999999 999999999887654

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02477 glutamate dehydrogenase

Probab=90.15  E-value=3.3  Score=39.73  Aligned_cols=32  Identities=31%  Similarity=0.526  Sum_probs=29.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|.|||.+|+.+++.|.+.. .+|++|+|.
T Consensus       207 ~~VaIqGfGnVG~~~A~~L~e~G-akVVaVsD~  238 (410)
T PLN02477        207 QTFVIQGFGNVGSWAAQLIHEKG-GKIVAVSDI  238 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence            68999999999999999998864 999999986

>PRK06487 glycerate dehydrogenase; Provisional

Probab=90.03  E-value=0.4  Score=44.31  Aligned_cols=29  Identities=28%  Similarity=0.438  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+++++.+... .+++.+.
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~~  177 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAF-GMRVLIG  177 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC-CCEEEEE
Confidence            5899999999999999999866 3777665

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=90.01  E-value=0.48  Score=46.69  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|..++..+..+. ++++.. |+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG-~~V~l~-D~   38 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAG-HTVLLY-DA   38 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEE-eC
Confidence            57999999999999999988764 565543 44

>PRK14031 glutamate dehydrogenase; Provisional

Probab=89.99  E-value=2.1  Score=41.44  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|-|+|.+|...++.|.+. ..+|++|+|.
T Consensus       229 ~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~  260 (444)
T PRK14031        229 KVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDS  260 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence            6899999999999999999876 4999999883

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=89.98  E-value=0.4  Score=44.15  Aligned_cols=29  Identities=38%  Similarity=0.524  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+++++.+..- .+++.+.
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~f-gm~V~~~  174 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAF-GAKVVYY  174 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhc-CCEEEEE
Confidence            6899999999999999998765 4777665

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=89.78  E-value=0.79  Score=44.59  Aligned_cols=29  Identities=17%  Similarity=0.316  Sum_probs=24.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|+|+|+|.+|+.+++.+.... ++++..
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~G-a~ViV~  283 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGFG-ARVVVT  283 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 565444

>TIGR00518 alaDH alanine dehydrogenase

Probab=89.70  E-value=0.66  Score=43.82  Aligned_cols=31  Identities=23%  Similarity=0.214  Sum_probs=24.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||.|+|+|.+|+..++.+.... +++..+ ++
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~-d~  198 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLG-ATVTIL-DI  198 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCC-CeEEEE-EC
Confidence            47999999999999999999875 564444 44

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=89.61  E-value=0.42  Score=40.56  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |||+|+|.||+|.-++-.+.++. .+++++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~   29 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGV   29 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT-SEEEEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCC-CEEEEE
Confidence            58999999999999998888875 777777

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=89.59  E-value=2.6  Score=40.86  Aligned_cols=103  Identities=15%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC--------hhhhhhcccccccC-CCCcCcceeeeCCceeEECCE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS--------TDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~--------~~~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      .||+|=|+|.+|..+++.|.+. ..++++|+|....        .+.+..++.+.... +.+. ..   ..   . ..+ 
T Consensus       238 k~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-~~---~~---~-~~~-  307 (454)
T PTZ00079        238 KTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-EY---AK---H-SST-  307 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-hh---hh---c-cCC-
Confidence            6899999999999999999876 4999999987311        11111111111000 1000 00   00   0 000 


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccC-CccCHHHHHHHHHCCCCeEEe
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTG-VFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~-~~~~~~~~~~~l~~G~k~vvi  126 (296)
                       ....   +.+++ |. .++|+.+-|.- ...+.+.++.+++.+|| +|+
T Consensus       308 -a~~~---~~~~~-~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak-~V~  350 (454)
T PTZ00079        308 -AKYV---PGKKP-WE-VPCDIAFPCATQNEINLEDAKLLIKNGCK-LVA  350 (454)
T ss_pred             -cEEe---CCcCc-cc-CCccEEEeccccccCCHHHHHHHHHcCCe-EEE
Confidence             0111   34454 74 68999998764 45566777878888996 444

>PLN02214 cinnamoyl-CoA reductase

Probab=89.54  E-value=2  Score=39.87  Aligned_cols=31  Identities=16%  Similarity=0.322  Sum_probs=25.6

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +++|-|.|+ |++|+.+++.|.++. .+++++.
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~   41 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGTV   41 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence            468999999 999999999998875 4666654

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=89.51  E-value=0.62  Score=43.99  Aligned_cols=107  Identities=19%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---eeE--EC--CE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TLL--FG--EK   77 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l~--~~--~~   77 (296)
                      .||+|.|. |-||...+..+.+||+ ++++++... .+.+.+....  ..-.|++-    ...+..   .+.  ..  +.
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~q~--~~f~p~~v----~i~d~~~~~~l~~~l~~~~~   74 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVEQI--LEFRPKFV----AIDDEASLKDLKTMLQQQGS   74 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHH--HHcCCCEE----EEcCHHHHHHHHHHhhcCCC
Confidence            68999999 9999999999999986 999999876 5654333322  11112111    111100   000  00  10


Q ss_pred             EEEEEecC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491           78 PVAVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA  121 (296)
Q Consensus        78 ~i~~~~~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~  121 (296)
                      .+.++... ...++ -...++|+|+.|.-.+.-..-.-.++++|.
T Consensus        75 ~~~v~~G~~~l~~l-~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk  118 (389)
T TIGR00243        75 RTEVLVGEEGICEM-AALEDVDQVMNAIVGAAGLLPTLAAIRAGK  118 (389)
T ss_pred             CcEEEECHHHHHHH-HcCCCCCEEEEhhhcHhhHHHHHHHHHCCC
Confidence            12233211 11111 012468999999877666666666778885

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.49  E-value=0.66  Score=37.26  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||.|+|+|.+|.++++.|.... +.-+.+.|.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~G-v~~i~ivD~   31 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSG-VGKITLIDF   31 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEEcC
Confidence            5899999999999999998765 333334443

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=89.42  E-value=1.5  Score=40.10  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=24.3

Q ss_pred             EEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            9 IGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+|+|+|++|..++-.|...+-+.-+.+.|.
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~   31 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            5899999999999998888775554455555

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=89.36  E-value=1.3  Score=40.35  Aligned_cols=85  Identities=21%  Similarity=0.200  Sum_probs=56.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      -||-|.|. |+.|..+++.+..-+.--+.+|+ + ...        ++..++                     ++.+.  
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~-p-~~~--------~~~v~G---------------------~~~y~--   53 (286)
T TIGR01019         7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVT-P-GKG--------GTTVLG---------------------LPVFD--   53 (286)
T ss_pred             CcEEEecCCcHHHHHHHHHHHhCCCCEEEEEC-C-CCC--------cceecC---------------------eeccC--
Confidence            58999999 99999999988776533333443 3 110        111111                     11222  


Q ss_pred             CCCCCCcccC-CCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKT-GAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~-~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +.++++.  . ++|+++.|.|.....+.++++.++|+|.++|
T Consensus        54 sv~dlp~--~~~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI   93 (286)
T TIGR01019        54 SVKEAVE--ETGANASVIFVPAPFAADAIFEAIDAGIELIVC   93 (286)
T ss_pred             CHHHHhh--ccCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence            3344541  1 3799999999999899999999999987655

ATP citrate lyases appear to form an outgroup.

>PLN00106 malate dehydrogenase

Probab=89.32  E-value=2.1  Score=39.74  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=25.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+ |.+|..++..|..++...-..+.|.
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di   52 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI   52 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            68999999 9999999999987765543444454

>PRK06932 glycerate dehydrogenase; Provisional

Probab=89.32  E-value=0.49  Score=43.64  Aligned_cols=29  Identities=24%  Similarity=0.404  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+++++.+... .+++.+.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~f-g~~V~~~  176 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQAL-GMKVLYA  176 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence            6899999999999999998765 3777664

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.29  E-value=3.1  Score=34.24  Aligned_cols=29  Identities=21%  Similarity=0.055  Sum_probs=23.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||-|+|+|.+|...++.|.+.. .+++.|
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VI   42 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVV   42 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            58999999999999999988754 455545

>PRK06199 ornithine cyclodeaminase; Validated

Probab=89.19  E-value=0.87  Score=43.18  Aligned_cols=34  Identities=12%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~   39 (296)
                      ..+++|+|+|..++..++++.. +|.++-+.|.++
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r  189 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR  189 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC
Confidence            3689999999999999999887 677999999887

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=89.16  E-value=3.8  Score=35.24  Aligned_cols=30  Identities=20%  Similarity=0.276  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .||-|+|+|.+|...++.|.+.. .+++.|+
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs   40 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS   40 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence            58999999999999999988865 5655553

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=89.11  E-value=0.92  Score=44.27  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|.|.+|..+++.|.++. .+| .+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G-~~V-~v~dr   32 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRG-FKI-SVYNR   32 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCC-CeE-EEEeC
Confidence            47999999999999999999876 454 44455

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=88.97  E-value=0.53  Score=43.64  Aligned_cols=29  Identities=31%  Similarity=0.460  Sum_probs=24.0

Q ss_pred             eEEEEEecCHHHHHHHHHHH-cCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVAL-QRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i   36 (296)
                      .++||+|+|.||+++++.+. .. .+++++.
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~~  175 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGF-NMPILYN  175 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcC-CCEEEEE
Confidence            68999999999999999987 54 4777643

>PLN02858 fructose-bisphosphate aldolase

Probab=88.73  E-value=0.81  Score=50.43  Aligned_cols=37  Identities=24%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+..++.+||++|.|++|..+++.|.... +++.. .++
T Consensus       319 ~~~~~~~~IGfIGlG~MG~~mA~~L~~~G-~~V~v-~dr  355 (1378)
T PLN02858        319 MQAKPVKRIGFIGLGAMGFGMASHLLKSN-FSVCG-YDV  355 (1378)
T ss_pred             ccccCCCeEEEECchHHHHHHHHHHHHCC-CEEEE-EeC
Confidence            44444478999999999999999998765 45543 444

>PRK08291 ectoine utilization protein EutC; Validated

Probab=88.69  E-value=0.72  Score=42.79  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=27.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+++|+|+|..|+.+++.+.....++-+.|.++
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R  165 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR  165 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            589999999999999998886445777888776

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.64  E-value=2.7  Score=40.49  Aligned_cols=92  Identities=23%  Similarity=0.257  Sum_probs=53.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .+|.|+|+|.+|..+++.|.+.. .++. +.+. ...+.+...+  +.    +.      ..+  +       .++....
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G-~~V~-~~d~-~~~~~~~~~~--~~----l~------~~~--~-------~~~~~~~   61 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLG-AKVI-LTDE-KEEDQLKEAL--EE----LG------ELG--I-------ELVLGEY   61 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEeC-CchHHHHHHH--HH----HH------hcC--C-------EEEeCCc
Confidence            68999999889999999999876 4544 4454 2211110100  00    00      001  1       1121111


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid  127 (296)
                      +++.   ..+.|+||-+++.....+.+..+.+.|.  .+++
T Consensus        62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i--~~~~   97 (450)
T PRK14106         62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI--EVIG   97 (450)
T ss_pred             chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC--cEEe
Confidence            2222   2478999999998777777777778887  4553

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=88.46  E-value=0.61  Score=43.24  Aligned_cols=29  Identities=34%  Similarity=0.574  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~  171 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGY  171 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence            58999999999999999988774 777666

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=88.36  E-value=0.69  Score=42.44  Aligned_cols=33  Identities=12%  Similarity=-0.043  Sum_probs=29.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .++||+|+|..|+..++++..-..++-+.|.++
T Consensus       118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r  150 (301)
T PRK06407        118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR  150 (301)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence            579999999999999999987666888888877

>PLN02928 oxidoreductase family protein

Probab=88.29  E-value=0.62  Score=43.62  Aligned_cols=30  Identities=30%  Similarity=0.349  Sum_probs=25.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+.+++.|.... +++.+.+
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG-~~V~~~d  189 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFG-VKLLATR  189 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCC-CEEEEEC
Confidence            58999999999999999998764 7887763

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=88.10  E-value=2.9  Score=40.40  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||-|.|+ |+||+.|++.|.++. .+|+++.
T Consensus       121 mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ld  151 (436)
T PLN02166        121 LRIVVTGGAGFVGSHLVDKLIGRG-DEVIVID  151 (436)
T ss_pred             CEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence            68999999 999999999998875 5777764

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=88.06  E-value=1.4  Score=41.03  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=21.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDD   30 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~   30 (296)
                      .+|||+|+|.+|+.++..+..+..
T Consensus        53 l~IaIIGfGnmGqflAetli~aGh   76 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDAGH   76 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhcCc
Confidence            799999999999999999988763

>PRK07340 ornithine cyclodeaminase; Validated

Probab=87.92  E-value=0.57  Score=42.99  Aligned_cols=33  Identities=18%  Similarity=-0.021  Sum_probs=26.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+++|+|+|..|+..++.+..-..++-+.|.++
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r  158 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR  158 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            689999999999999999875323566777776

>TIGR00936 ahcY adenosylhomocysteinase

Probab=87.79  E-value=1.2  Score=42.49  Aligned_cols=29  Identities=17%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|+|+|+|.+|+.+++.+.... ++++.+
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~  224 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVT  224 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCc-CEEEEE
Confidence            58999999999999999988764 675554

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=87.77  E-value=3.5  Score=39.96  Aligned_cols=89  Identities=19%  Similarity=0.185  Sum_probs=54.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .+||.|+|.|..|+.++|.|.++. .++ .++|.......    .  .. .+.+.       .+         +.+....
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v-~v~D~~~~~~~----~--~~-~~~~~-------~~---------i~~~~g~   61 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLG-AEV-TVSDDRPAPEG----L--AA-QPLLL-------EG---------IEVELGS   61 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCC-CeE-EEEcCCCCccc----h--hh-hhhhc-------cC---------ceeecCc
Confidence            478999999999999999999876 444 44453122210    0  00 00000       00         1111111


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                      .+. .+|  .++|+|+.+=|-......+.++.++|++
T Consensus        62 ~~~-~~~--~~~d~vV~SPGi~~~~p~v~~A~~~gi~   95 (448)
T COG0771          62 HDD-EDL--AEFDLVVKSPGIPPTHPLVEAAKAAGIE   95 (448)
T ss_pred             cch-hcc--ccCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence            222 334  5889999998887777888999999994

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=87.77  E-value=0.76  Score=38.55  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             EEEEEecCHHHHHHHHHHHcCC
Q 022491            8 KIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      ||.|+|+|-+|.+++..|....
T Consensus         1 ~VlViG~GglGs~ia~~La~~G   22 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSG   22 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcC
Confidence            5899999999999999998765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06436 glycerate dehydrogenase; Provisional

Probab=87.74  E-value=0.73  Score=42.31  Aligned_cols=30  Identities=37%  Similarity=0.525  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+++++.+..- .+++.+.+
T Consensus       123 ktvgIiG~G~IG~~vA~~l~af-G~~V~~~~  152 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAF-GMNIYAYT  152 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCEEEEEC
Confidence            6899999999999999988754 47776654

>PRK07236 hypothetical protein; Provisional

Probab=87.63  E-value=0.8  Score=43.11  Aligned_cols=34  Identities=12%  Similarity=-0.036  Sum_probs=27.1

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVA   35 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~   35 (296)
                      |-.+|+.+|.|+|+|.+|..++..|.++. ++++-
T Consensus         1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v   34 (386)
T PRK07236          1 MTHMSGPRAVVIGGSLGGLFAALLLRRAG-WDVDV   34 (386)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHhCC-CCEEE
Confidence            66666689999999999999999998764 55433

>cd00704 MDH Malate dehydrogenase

Probab=87.52  E-value=1.4  Score=40.82  Aligned_cols=25  Identities=20%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCc
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDV   31 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~   31 (296)
                      +||+|+|+ |.+|..++..|...+-+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~   26 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELF   26 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCcc
Confidence            48999999 99999999988876544

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02206 UDP-glucuronate decarboxylase

Probab=87.46  E-value=3.3  Score=40.03  Aligned_cols=30  Identities=17%  Similarity=0.390  Sum_probs=25.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||-|.|+ |++|+.|++.|.++. .+++++.
T Consensus       120 ~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld  150 (442)
T PLN02206        120 LRVVVTGGAGFVGSHLVDRLMARG-DSVIVVD  150 (442)
T ss_pred             CEEEEECcccHHHHHHHHHHHHCc-CEEEEEe
Confidence            68999999 999999999998875 5666663

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=87.31  E-value=1.8  Score=39.03  Aligned_cols=32  Identities=25%  Similarity=0.219  Sum_probs=24.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .++.|+|+|-+|+.+++.|....-.++ .|.++
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~g~~~V-~v~~R  155 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDLGVAEI-TIVNR  155 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEE-EEEeC
Confidence            579999999999999999998763344 44444

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=87.25  E-value=0.88  Score=41.97  Aligned_cols=30  Identities=30%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+++++.|.... +++.+..
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~  166 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWG-FPLRCWS  166 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            58999999999999999998764 7776653

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.19  E-value=2.1  Score=39.22  Aligned_cols=71  Identities=25%  Similarity=0.257  Sum_probs=46.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .+|+|+|. |.+|+-++++|.++. ..+...+....                                            
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~~t~--------------------------------------------  194 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHSRST--------------------------------------------  194 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCC-CEEEEECCCCC--------------------------------------------
Confidence            58999999 699999999998764 44433332200                                            


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      ++.+.   ..++|+||.|+|....  .-+..++.|+  +|||.+
T Consensus       195 ~l~e~---~~~ADIVIsavg~~~~--v~~~~ik~Ga--iVIDvg  231 (301)
T PRK14194        195 DAKAL---CRQADIVVAAVGRPRL--IDADWLKPGA--VVIDVG  231 (301)
T ss_pred             CHHHH---HhcCCEEEEecCChhc--ccHhhccCCc--EEEEec
Confidence            11221   2468999999987532  2233478888  888875

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=87.15  E-value=1  Score=40.90  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=27.2

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+..  .||||+|+|.+|..+++.+..+. .++... ++
T Consensus         1 ~~~~--~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~-d~   35 (295)
T PLN02545          1 MAEI--KKVGVVGAGQMGSGIAQLAAAAG-MDVWLL-DS   35 (295)
T ss_pred             CCCc--CEEEEECCCHHHHHHHHHHHhcC-CeEEEE-eC
Confidence            5543  68999999999999999998875 565544 44

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=87.07  E-value=2.4  Score=39.52  Aligned_cols=32  Identities=16%  Similarity=0.162  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||-|+|+|-+|+.+++.|.++.- .-+.|..+
T Consensus       175 k~vLvIGaGem~~l~a~~L~~~g~-~~i~v~nR  206 (338)
T PRK00676        175 ASLLFIGYSEINRKVAYYLQRQGY-SRITFCSR  206 (338)
T ss_pred             CEEEEEcccHHHHHHHHHHHHcCC-CEEEEEcC
Confidence            589999999999999999999863 33444444

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=87.06  E-value=1.5  Score=40.70  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=21.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDD   30 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~   30 (296)
                      +||+|+|+ |.+|..++-.|...+-
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~   28 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGEL   28 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCc
Confidence            79999999 9999999998887653

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=87.01  E-value=1.7  Score=40.60  Aligned_cols=21  Identities=19%  Similarity=0.533  Sum_probs=19.0

Q ss_pred             EEEEEecCHHHHHHHHHHHcC
Q 022491            8 KIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      ||+|+|+|..|..++..|...
T Consensus         1 kI~VIGaG~wGtALA~~la~n   21 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAEN   21 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHc
Confidence            689999999999999999763

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02494 adenosylhomocysteinase

Probab=86.89  E-value=1.6  Score=42.44  Aligned_cols=29  Identities=17%  Similarity=0.280  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|+|+|+|.+|+.+++.+.... ++++.+
T Consensus       255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~  283 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVT  283 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 676554

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=86.67  E-value=2.1  Score=35.52  Aligned_cols=87  Identities=22%  Similarity=0.319  Sum_probs=45.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .++.|+|||.+|+.+++.|.... .+ |.|.+.  ++-.   .++  ..           .+|  .     .  +.   .
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~G-a~-V~V~e~--DPi~---alq--A~-----------~dG--f-----~--v~---~   71 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLG-AR-VTVTEI--DPIR---ALQ--AA-----------MDG--F-----E--VM---T   71 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT--E-EEEE-S--SHHH---HHH--HH-----------HTT--------E--EE----
T ss_pred             CEEEEeCCCcccHHHHHHHhhCC-CE-EEEEEC--ChHH---HHH--hh-----------hcC--c-----E--ec---C
Confidence            57999999999999999998875 33 244443  4421   111  10           012  1     1  11   1


Q ss_pred             CCCCCcccCCCcEEEEccCCcc--CHHHHHHHHHCCCCeEEeeCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFT--DKDKAAAHLKGGAKKVVISAPSK  131 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~--~~~~~~~~l~~G~k~vvid~~~~  131 (296)
                      .++.   ....|++|.|||...  ..+..+ .++.|+  ++.+..+.
T Consensus        72 ~~~a---~~~adi~vtaTG~~~vi~~e~~~-~mkdga--il~n~Gh~  112 (162)
T PF00670_consen   72 LEEA---LRDADIFVTATGNKDVITGEHFR-QMKDGA--ILANAGHF  112 (162)
T ss_dssp             HHHH---TTT-SEEEE-SSSSSSB-HHHHH-HS-TTE--EEEESSSS
T ss_pred             HHHH---HhhCCEEEECCCCccccCHHHHH-HhcCCe--EEeccCcC
Confidence            2222   246899999999743  344443 457788  77766543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=86.56  E-value=1.2  Score=43.38  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=24.1

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +|||+|.|.+|..+++.|.++. .++. +.++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G-~~V~-v~dr   30 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHG-FTVS-VYNR   30 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcC-CeEE-EEeC
Confidence            4899999999999999999886 4554 4444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=86.34  E-value=0.92  Score=42.08  Aligned_cols=29  Identities=34%  Similarity=0.502  Sum_probs=24.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++||+|.|+||+.++|.+..- .+++.+-
T Consensus       147 ktvGIiG~GrIG~avA~r~~~F-gm~v~y~  175 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGF-GMKVLYY  175 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcC-CCEEEEE
Confidence            6899999999999999999843 4776655

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.21  E-value=1.2  Score=40.64  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=26.1

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |+..  .||+|+|+|.+|..++..|.+.. .++..+
T Consensus         1 ~~~~--~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~   33 (311)
T PRK06130          1 MNPI--QNLAIIGAGTMGSGIAALFARKG-LQVVLI   33 (311)
T ss_pred             CCCc--cEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence            6653  68999999999999999998764 565554

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.10  E-value=4.5  Score=39.65  Aligned_cols=83  Identities=18%  Similarity=0.138  Sum_probs=51.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe-cC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG-FR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~-~~   85 (296)
                      .||.|+|+|.+|...++.|.... .++.. .|. . ...... +  .+ .            |  +.       ++. ..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~~-~D~-~-~~~~~~-l--~~-~------------g--~~-------~~~~~~   63 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFG-ARPTV-CDD-D-PDALRP-H--AE-R------------G--VA-------TVSTSD   63 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCC-CEEEE-EcC-C-HHHHHH-H--Hh-C------------C--CE-------EEcCcc
Confidence            48999999999999999888765 45444 564 2 211111 1  11 0            1  10       111 01


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                      .++.+    .+.|+||.+.|...+......+.++|++
T Consensus        64 ~~~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi~   96 (488)
T PRK03369         64 AVQQI----ADYALVVTSPGFRPTAPVLAAAAAAGVP   96 (488)
T ss_pred             hHhHh----hcCCEEEECCCCCCCCHHHHHHHHCCCc
Confidence            12222    3679999999887777777788888883

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=86.05  E-value=1.6  Score=31.27  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=23.6

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ||.|+|+|++|-|++..|.+.. .++.-|.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~   29 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELG-KEVTLIE   29 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-SEEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhC-cEEEEEe
Confidence            6899999999999999998764 5555443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=86.03  E-value=0.77  Score=42.07  Aligned_cols=30  Identities=33%  Similarity=0.326  Sum_probs=22.8

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVND   38 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~   38 (296)
                      ||.|+|+|-+|.++++.|..-. +.-..+.|
T Consensus         1 kVLIvGaGGLGs~vA~~La~aG-Vg~ItlvD   30 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWG-VRHITFVD   30 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEEC
Confidence            6899999999999999998764 43333334

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=86.02  E-value=1.7  Score=39.84  Aligned_cols=142  Identities=14%  Similarity=0.149  Sum_probs=72.2

Q ss_pred             EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +|-|.|. ||||...++.|.+.. .+++.+-.- .+... -.+.   ...++|-.+.        |  .++.       -
T Consensus         2 ~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL-~~g~~-~~v~---~~~~~f~~gD--------i--~D~~-------~   58 (329)
T COG1087           2 KVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNL-SNGHK-IALL---KLQFKFYEGD--------L--LDRA-------L   58 (329)
T ss_pred             eEEEecCcchhHHHHHHHHHHCC-CeEEEEecC-CCCCH-HHhh---hccCceEEec--------c--ccHH-------H
Confidence            6788888 999999999999864 666655322 22110 0011   0001111011        1  0000       0


Q ss_pred             CCCCCcccCCCcEEEEccCCccC------------------HHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhc-cCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTD------------------KDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKE-YKP  147 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~------------------~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~-l~~  147 (296)
                      .+++ +...++|.||...+.-..                  ....+...+.|+|++|+|+++     .|||.+... +.+
T Consensus        59 L~~v-f~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStA-----avYG~p~~~PI~E  132 (329)
T COG1087          59 LTAV-FEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTA-----AVYGEPTTSPISE  132 (329)
T ss_pred             HHHH-HHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecch-----hhcCCCCCcccCC
Confidence            1111 223467888876664222                  234566778999999998765     467776331 221


Q ss_pred             CCCeEEcCCcchhh---hHhHHHHHHhhcCeeEEE
Q 022491          148 ELDIVSNASCTTNC---LAPLAKVIHDKFGIVEGL  179 (296)
Q Consensus       148 ~~~iIs~p~C~~ta---l~~~l~~L~~~~gi~~~~  179 (296)
                      ... .+.-+.|...   .=-+|+-+.+.+++..+.
T Consensus       133 ~~~-~~p~NPYG~sKlm~E~iL~d~~~a~~~~~v~  166 (329)
T COG1087         133 TSP-LAPINPYGRSKLMSEEILRDAAKANPFKVVI  166 (329)
T ss_pred             CCC-CCCCCcchhHHHHHHHHHHHHHHhCCCcEEE
Confidence            111 1122233333   344555666666755443

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=85.97  E-value=1.3  Score=41.45  Aligned_cols=40  Identities=28%  Similarity=0.362  Sum_probs=34.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhh
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMT   47 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a   47 (296)
                      .|+.|.|. |-||..-+..+.++|+ |+++++... .+.+.+.
T Consensus         2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag-~n~~~l~   43 (385)
T COG0743           2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG-KNVELLA   43 (385)
T ss_pred             ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC-CcHHHHH
Confidence            68999999 9999999999999996 899999876 5655443

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=85.80  E-value=1.1  Score=41.31  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=26.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||-|.|+ |++|+.|++.|.++...+|.++.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~   33 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD   33 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence            58999999 99999999999876556787775

>PLN02306 hydroxypyruvate reductase

Probab=85.79  E-value=1.1  Score=42.59  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+++++.+. .. .+++.+. |+
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~-d~  197 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY-DL  197 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE-CC
Confidence            68999999999999999985 44 5787665 44

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.73  E-value=1  Score=43.12  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+.+++.+.... +++.+..
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fG-m~V~~~d  181 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLG-MRVYFYD  181 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998763 7776653

>PLN03139 formate dehydrogenase; Provisional

Probab=85.71  E-value=1.1  Score=42.67  Aligned_cols=31  Identities=32%  Similarity=0.449  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|+||+.+++.|... .+++.+. ++
T Consensus       200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~~-d~  230 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLYH-DR  230 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHC-CCEEEEE-CC
Confidence            5899999999999999999864 5777654 44

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=85.65  E-value=4.6  Score=34.84  Aligned_cols=85  Identities=16%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .||.|+|.|.+|..-++.|.+.. .+++.| ++....+ +..+   ...      +.+.+..              ....
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVv-sp~~~~~-l~~l---~~~------~~i~~~~--------------~~~~   63 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAG-AQLRVI-AEELESE-LTLL---AEQ------GGITWLA--------------RCFD   63 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCC-CEEEEE-cCCCCHH-HHHH---HHc------CCEEEEe--------------CCCC
Confidence            58999999999999999998865 454444 3412221 1111   110      1111111              1112


Q ss_pred             CCCCCcccCCCcEEEEccCCc-cCHHHHHHHHHCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGA  121 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~-~~~~~~~~~l~~G~  121 (296)
                      ++.+    .+.|+||-||+.. ........+.+.|+
T Consensus        64 ~~dl----~~~~lVi~at~d~~ln~~i~~~a~~~~i   95 (205)
T TIGR01470        64 ADIL----EGAFLVIAATDDEELNRRVAHAARARGV   95 (205)
T ss_pred             HHHh----CCcEEEEECCCCHHHHHHHHHHHHHcCC
Confidence            2223    4789999999986 55666666667777

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=85.64  E-value=4.7  Score=36.63  Aligned_cols=31  Identities=32%  Similarity=0.327  Sum_probs=23.4

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++.|+|+|-+|...+.++.... ++.+.+.+.
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~  177 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET  177 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC
Confidence            6899999999999998877765 554444444

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=85.49  E-value=1.1  Score=41.57  Aligned_cols=95  Identities=19%  Similarity=0.189  Sum_probs=54.9

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      |+.+|-.-+-|.|+ ||+|+.+++.|..+.. .. ++..++.. .+.+...|  +.....|+                  
T Consensus         1 ~~~e~e~d~iiYGAtGy~G~lvae~l~~~g~-~~-aLAgRs~~kl~~l~~~L--G~~~~~~p------------------   58 (382)
T COG3268           1 MPMEREYDIIIYGATGYAGGLVAEYLAREGL-TA-ALAGRSSAKLDALRASL--GPEAAVFP------------------   58 (382)
T ss_pred             CCCCcceeEEEEccccchhHHHHHHHHHcCC-ch-hhccCCHHHHHHHHHhc--CccccccC------------------
Confidence            55565577899999 9999999999987642 11 55555111 11111111  12122222                  


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCH--HHHHHHHHCCCC
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDK--DKAAAHLKGGAK  122 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~--~~~~~~l~~G~k  122 (296)
                        +.   +|..++-...+++||+.|.|.++..  ..+...+.+|..
T Consensus        59 --~~---~p~~~~~~~~~~~VVlncvGPyt~~g~plv~aC~~~GTd   99 (382)
T COG3268          59 --LG---VPAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTD   99 (382)
T ss_pred             --CC---CHHHHHHHHhcceEEEeccccccccccHHHHHHHHhCCC
Confidence              00   1221111146899999999987653  466777778873

>PRK06823 ornithine cyclodeaminase; Validated

Probab=85.47  E-value=2.7  Score=38.86  Aligned_cols=33  Identities=24%  Similarity=0.159  Sum_probs=29.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+++|+|+|..++..++++..-..++-+.|.++
T Consensus       129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r  161 (315)
T PRK06823        129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR  161 (315)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC
Confidence            689999999999999999887666888888887

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=85.02  E-value=1.4  Score=37.05  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=22.5

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ||||+|+|.+|+.++..+..+. +++..+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~   28 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAG-YEVTLY   28 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTT-SEEEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCC-CcEEEE
Confidence            6999999999999999988874 665554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=84.99  E-value=1.4  Score=39.32  Aligned_cols=32  Identities=22%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|-|||.+|+.+++.|.+.. .++++|+|.
T Consensus        39 ~~vaIqGfGnVG~~~a~~L~e~G-akvvaVsD~   70 (254)
T cd05313          39 KRVAISGSGNVAQYAAEKLLELG-AKVVTLSDS   70 (254)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECC
Confidence            69999999999999999998864 999999984

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=84.77  E-value=1.3  Score=43.33  Aligned_cols=31  Identities=32%  Similarity=0.433  Sum_probs=26.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~   37 (296)
                      |||+|+|+||+|.-++-.|.++. .++++++-
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD   33 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVD   33 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            68999999999999998888764 68888874

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=84.69  E-value=2.1  Score=41.43  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcC
Q 022491            7 IKIGINGF-GRIGRLVARVALQR   28 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~   28 (296)
                      +||+|+|+ |.+|..++-.|...
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhc
Confidence            89999999 99999999988876

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=84.59  E-value=1  Score=39.14  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      .||.|+|+|-+|.+++..|....
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~G   51 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARSG   51 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHcC
Confidence            58999999999999999998765

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=84.35  E-value=6.2  Score=37.63  Aligned_cols=32  Identities=28%  Similarity=0.594  Sum_probs=29.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|=|+|.+|+.+++.|.+. ..+|+++.|.
T Consensus       208 ~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds  239 (411)
T COG0334         208 ARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDS  239 (411)
T ss_pred             CEEEEECccHHHHHHHHHHHHc-CCEEEEEEcC
Confidence            6899999999999999999876 6999999876

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.34  E-value=3  Score=38.52  Aligned_cols=34  Identities=12%  Similarity=0.209  Sum_probs=24.9

Q ss_pred             CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        95 ~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      ...|++|+|++...+.+.+-.+++.|-..+++..
T Consensus       241 ~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  241 KQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             cCCCeEEEccCchHHHHHHHHHhccCCEEEEecc
Confidence            3489999999999988887777776543344433

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=84.14  E-value=1.5  Score=37.20  Aligned_cols=29  Identities=21%  Similarity=0.231  Sum_probs=23.9

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++.|+|+ |.+|+.+++.|.++. .++..+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~   58 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREG-ARVVLV   58 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999998 999999999998775 465544

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=84.09  E-value=2.1  Score=44.01  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=23.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||+|+|+|.+|..++..+.....++++.+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~  339 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIK  339 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence            579999999999999998873334555443

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=83.93  E-value=1.2  Score=42.71  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=25.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||.|+|+|-+|+.+++.|..++ +.-+.|..+
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g-~~~I~V~nR  213 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALA-PKQIMLANR  213 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcC-CCEEEEECC
Confidence            58999999999999999999876 333445444

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.67  E-value=4.8  Score=38.50  Aligned_cols=82  Identities=21%  Similarity=0.275  Sum_probs=50.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .||.|+|.|.+|+.+++.|.+.. .++. ..|...+.     +.   . .+.+.       .   .        ..  .+
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G-~~V~-g~D~~~~~-----~~---~-~~~~~-------~---~--------~~--~~   52 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKG-VYVI-GVDKSLEA-----LQ---S-CPYIH-------E---R--------YL--EN   52 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCC-CEEE-EEeCCccc-----cc---h-hHHHh-------h---h--------hc--CC
Confidence            58999999999999999998876 3443 34441111     00   0 00000       0   0        00  01


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                      ++.+   ..+.|++|-+.|.......+..++++|++
T Consensus        53 ~~~~---~~~~dlvV~s~gi~~~~~~l~~A~~~g~~   85 (418)
T PRK00683         53 AEEF---PEQVDLVVRSPGIKKEHPWVQAAIASHIP   85 (418)
T ss_pred             cHHH---hcCCCEEEECCCCCCCcHHHHHHHHCCCc
Confidence            2222   13679999988877667888899999984

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=83.48  E-value=4.1  Score=37.43  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      +||.|+|+|.+|..+.-.|.+.+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g   23 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG   23 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC
Confidence            48999999999999999888877

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=83.44  E-value=2.7  Score=38.17  Aligned_cols=32  Identities=28%  Similarity=0.274  Sum_probs=24.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||.|+|+|-+|+.++..|.... +.-+.|.++
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G-~~~I~I~nR  159 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLG-VERLTIFDV  159 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcC-CCEEEEECC
Confidence            47999999999999999998765 433555555

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=83.34  E-value=3.2  Score=41.50  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=24.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|.|.|+ |.+|+.+++.|.++. .+|+++.
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~G-~~Vval~  111 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKLG-FRVRAGV  111 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CeEEEEe
Confidence            46899999 999999999998875 5666653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=83.24  E-value=6.4  Score=36.28  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      -+|.|+|+|-+|...+.++....--+++++
T Consensus       171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~  200 (343)
T PRK09880        171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCA  200 (343)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            369999999999999988877642244444

>PRK06141 ornithine cyclodeaminase; Validated

Probab=82.81  E-value=2  Score=39.52  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.+|+..++.+.. ++ ++-+.|.++
T Consensus       126 ~~v~iiG~G~~a~~~~~al~~~~~-~~~V~V~~R  158 (314)
T PRK06141        126 SRLLVVGTGRLASLLALAHASVRP-IKQVRVWGR  158 (314)
T ss_pred             ceEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcC
Confidence            689999999999999987665 55 555666666

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=82.80  E-value=1.6  Score=38.14  Aligned_cols=101  Identities=25%  Similarity=0.240  Sum_probs=53.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |++.|+|+|++|+.+++.|.+.. -+++.|-..   .+...+.+  .+.+.    ..+       +..++.     ...-
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d---~~~~~~~~--~~~~~----~~~-------v~gd~t-----~~~~   58 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD---EERVEEFL--ADELD----THV-------VIGDAT-----DEDV   58 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC---HHHHHHHh--hhhcc----eEE-------EEecCC-----CHHH
Confidence            47999999999999999999875 455555322   22111101  10010    000       100000     0001


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHH-HHHHHH-CCCCeEEeeCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDK-AAAHLK-GGAKKVVISAPSK  131 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~-~~~~l~-~G~k~vvid~~~~  131 (296)
                      +++..  ..++|+++-+|+.....-. +.-+++ .|.+.++.-..++
T Consensus        59 L~~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~  103 (225)
T COG0569          59 LEEAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP  103 (225)
T ss_pred             HHhcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence            12222  3578999999999554433 333334 5888777765543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=82.66  E-value=1.9  Score=41.41  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||+|+|.|++|..++..|.++. .++.++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D   33 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQ-KQVIGVD   33 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence            68999999999999999998875 6666653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=82.66  E-value=2.6  Score=36.22  Aligned_cols=30  Identities=23%  Similarity=0.150  Sum_probs=23.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||.|+|+|-+|.++++.|....--++..+
T Consensus        22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lv   51 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIV   51 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence            589999999999999999988752244333

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=82.61  E-value=1.4  Score=40.53  Aligned_cols=94  Identities=23%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      .+++|+|+|..++..++++.. +| ++-+.|.++..+ .+.++..+  .. +   .           +     .+...  
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~--~~-~---~-----------~-----~v~~~--  183 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARL--RD-L---G-----------V-----PVVAV--  183 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHH--HC-C---C-----------T-----CEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhh--cc-c---c-----------c-----cceec--
Confidence            589999999999999999876 66 888888887222 12222211  11 1   0           1     11111  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHH-HHHHHHHCCCCeEEeeCCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKD-KAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~-~~~~~l~~G~k~vvid~~~  130 (296)
                      .++++.   ..++|+|+.||++..... .-...++.|+  .|....+
T Consensus       184 ~~~~~a---v~~aDii~taT~s~~~~P~~~~~~l~~g~--hi~~iGs  225 (313)
T PF02423_consen  184 DSAEEA---VRGADIIVTATPSTTPAPVFDAEWLKPGT--HINAIGS  225 (313)
T ss_dssp             SSHHHH---HTTSSEEEE----SSEEESB-GGGS-TT---EEEE-S-
T ss_pred             cchhhh---cccCCEEEEccCCCCCCccccHHHcCCCc--EEEEecC
Confidence            244443   368999999999876111 1123456677  5555444

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=82.51  E-value=5.7  Score=36.16  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=46.5

Q ss_pred             eEEEEEecCH-HHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGR-IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~-iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .+|.|+|.|. +|+-++.+|.++. ..+..++++  ..                                          
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~g-atVtv~~s~--t~------------------------------------------  193 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQKN-ASVTILHSR--SK------------------------------------------  193 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHCC-CeEEEEeCC--ch------------------------------------------
Confidence            5899999944 9999999988763 444443322  00                                          


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK  131 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~  131 (296)
                      +..+.   ..++|+||.|+|...-  ..+..++.|+  +|||.+..
T Consensus       194 ~l~~~---~~~ADIVIsAvg~p~~--i~~~~vk~ga--vVIDvGi~  232 (286)
T PRK14175        194 DMASY---LKDADVIVSAVGKPGL--VTKDVVKEGA--VIIDVGNT  232 (286)
T ss_pred             hHHHH---HhhCCEEEECCCCCcc--cCHHHcCCCc--EEEEcCCC
Confidence            01111   2478999999987421  2234567787  89987553

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.32  E-value=2.5  Score=36.27  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=27.0

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |..+++.++-|.|+ |.+|+++++.|.++.. +++.+
T Consensus         1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~   36 (249)
T PRK12825          1 MGSLMGRVALVTGAARGLGRAIALRLARAGA-DVVVH   36 (249)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEE
Confidence            55555578999999 9999999999987653 54443

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=82.02  E-value=1.8  Score=38.37  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=20.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      .||.|+|+|-+|.++++.|..-.
T Consensus        33 ~~VliiG~GglGs~va~~La~~G   55 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAG   55 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC
Confidence            58999999999999999998765

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.97  E-value=2.1  Score=38.53  Aligned_cols=29  Identities=34%  Similarity=0.519  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||+|+|+|++|..++..+..+. .+++.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g-~~V~~~   32 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAG-YDVVMV   32 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCC-CceEEE
Confidence            58999999999999999998875 455554

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=81.97  E-value=4.8  Score=36.83  Aligned_cols=72  Identities=17%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .+|+|+|- |.+|+-+++.|.+.. .++...+++..                                            
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g-~tVtv~~~rT~--------------------------------------------  193 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAAN-ATVTIAHSRTR--------------------------------------------  193 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCC-CEEEEECCCCC--------------------------------------------
Confidence            58999997 999999999988653 44433322211                                            


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      ++++.   ...+|+||.|+|....  .-...++.|+  +|||.+.
T Consensus       194 ~l~e~---~~~ADIVIsavg~~~~--v~~~~lk~Ga--vVIDvGi  231 (296)
T PRK14188        194 DLPAV---CRRADILVAAVGRPEM--VKGDWIKPGA--TVIDVGI  231 (296)
T ss_pred             CHHHH---HhcCCEEEEecCChhh--cchheecCCC--EEEEcCC
Confidence            11111   2468999999997432  2233477888  8888654

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.96  E-value=8.3  Score=37.35  Aligned_cols=91  Identities=14%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .||+|+|+|..|+.+++.|.+.. .+ |.+.|.......       ......+.      ..|  +       .++...+
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G-~~-V~~~D~~~~~~~-------~~~~~~l~------~~g--i-------~~~~~~~   70 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLG-AK-VTAFDKKSEEEL-------GEVSNELK------ELG--V-------KLVLGEN   70 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCC-CE-EEEECCCCCccc-------hHHHHHHH------hCC--C-------EEEeCCC
Confidence            58999999999999999999876 34 444564221110       00000000      011  1       1111111


Q ss_pred             -CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491           87 -PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        87 -~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid  127 (296)
                       ++.+    .+.|+||-+.+--.+......+.+.|+  .|++
T Consensus        71 ~~~~~----~~~dlVV~Spgi~~~~p~~~~a~~~~i--~i~s  106 (458)
T PRK01710         71 YLDKL----DGFDVIFKTPSMRIDSPELVKAKEEGA--YITS  106 (458)
T ss_pred             ChHHh----ccCCEEEECCCCCCCchHHHHHHHcCC--cEEe
Confidence             2223    468999888655556667777788888  4554

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=81.87  E-value=2.9  Score=39.73  Aligned_cols=25  Identities=12%  Similarity=0.258  Sum_probs=21.7

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCc
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDV   31 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~   31 (296)
                      +||+|+|+ |.+|..++-.|....-+
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~   70 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVF   70 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccc
Confidence            89999999 99999999988876533

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=81.78  E-value=12  Score=33.17  Aligned_cols=28  Identities=29%  Similarity=0.342  Sum_probs=23.0

Q ss_pred             EEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            9 IGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         9 vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |-|.|+ |++|..+++.|.+.. .++.++.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   29 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDG-HEVTILT   29 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcC-CEEEEEe
Confidence            358899 999999999998764 6777765

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=81.68  E-value=2.4  Score=38.63  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=22.5

Q ss_pred             EEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            9 IGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+|+|+|.+|..++..+..+.-.+++.+ |.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~-Di   30 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLL-DI   30 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEE-eC
Confidence            6899999999999888876653355444 65

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=81.68  E-value=3.6  Score=37.28  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=24.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|-|.|+ |++|+.+++.|.+++ .+++++.
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~   35 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV   35 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence            57999999 999999999999875 4665554

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=81.51  E-value=11  Score=37.25  Aligned_cols=31  Identities=23%  Similarity=0.101  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      -||.|+|+|.+|...++.+.... .+ |.+.|.
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~-V~a~D~  196 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLG-AI-VRAFDT  196 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CE-EEEEeC
Confidence            58999999999999999988876 45 445565

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=81.24  E-value=1.7  Score=42.10  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=23.0

Q ss_pred             CCCCeeEEEEEecCHHHHHHHHHHHcC
Q 022491            2 AGDKKIKIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         2 ~~~m~i~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      ..+|+.+|+|||||..|...+|.|..+
T Consensus         2 ~~~~~~~vaIIGAG~sGL~~ar~l~~~   28 (448)
T KOG1399|consen    2 IMMMSKDVAVIGAGPAGLAAARELLRE   28 (448)
T ss_pred             CcCCCCceEEECcchHHHHHHHHHHHC
Confidence            334568999999999999999999876

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=81.21  E-value=6.3  Score=36.75  Aligned_cols=29  Identities=14%  Similarity=0.562  Sum_probs=22.9

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +|.|.|+|-+|..++.++.... .+++.+.
T Consensus       186 ~VlV~G~G~vG~~avq~Ak~~G-a~vi~~~  214 (360)
T PLN02586        186 HLGVAGLGGLGHVAVKIGKAFG-LKVTVIS  214 (360)
T ss_pred             EEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            6899999999999988877764 5666554

>PLN02858 fructose-bisphosphate aldolase

Probab=81.00  E-value=3.3  Score=45.79  Aligned_cols=31  Identities=13%  Similarity=0.152  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .|||++|.|.+|..+++.|.++. .++. +.++
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~G-~~v~-v~dr   35 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRSG-FKVQ-AFEI   35 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHCC-CeEE-EEcC
Confidence            58999999999999999998875 5543 4455

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=80.93  E-value=2.8  Score=43.13  Aligned_cols=29  Identities=17%  Similarity=0.253  Sum_probs=23.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||+|+|+|.+|..++..+..+. ++++.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~  342 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKG-VPVIMK  342 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCC-CeEEEE
Confidence            57999999999999999888764 554444

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=80.76  E-value=5.5  Score=36.24  Aligned_cols=31  Identities=19%  Similarity=0.278  Sum_probs=25.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEec
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~   38 (296)
                      .+|-|.|+ |++|+.+++.|.+++ .+++++..
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r   37 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVR   37 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence            57999999 999999999999875 46665543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=80.71  E-value=4.8  Score=36.08  Aligned_cols=29  Identities=28%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++.|+|+|-+|+.+++.|.... .++...
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g-~~v~v~  146 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKAD-CNVIIA  146 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC-CEEEEE
Confidence            47999999999999999998776 455444

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02427 UDP-apiose/xylose synthase

Probab=80.57  E-value=2.4  Score=39.83  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||-|.|+ |++|+.|++.|.++...+++++.
T Consensus        15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~   46 (386)
T PLN02427         15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALD   46 (386)
T ss_pred             cEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence            68999999 99999999999987546777774

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=80.48  E-value=2.6  Score=43.60  Aligned_cols=29  Identities=21%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||+|+|+|.+|..++..+..+. ++++.+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G-~~V~l~  364 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKG-LKTVLK  364 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCC-CcEEEe
Confidence            57999999999999999888774 665544

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=80.48  E-value=2.2  Score=42.32  Aligned_cols=29  Identities=34%  Similarity=0.598  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+++++.|.... +++.+.
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG-~~V~~~  167 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFG-MKVLAY  167 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            58999999999999999998764 777665

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=80.48  E-value=10  Score=35.00  Aligned_cols=30  Identities=30%  Similarity=0.330  Sum_probs=24.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+|-+|...+.++.... .+++++.
T Consensus       174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~  203 (355)
T cd08230         174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLN  203 (355)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEEe
Confidence            47999999999999998877765 5776665

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK07589 ornithine cyclodeaminase; Validated

Probab=80.42  E-value=5.1  Score=37.55  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=27.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+++|+|+|..++..++++..--.++-+.|.++
T Consensus       130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r  162 (346)
T PRK07589        130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDI  162 (346)
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC
Confidence            679999999999999998776445777888776

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=80.06  E-value=1.6  Score=38.12  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEec
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~   38 (296)
                      .||.|+|+|-+|.++++.|.... +.-..+.|
T Consensus        22 ~~VlivG~GglGs~va~~La~~G-vg~i~lvD   52 (228)
T cd00757          22 ARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVD   52 (228)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence            58999999999999999998765 43334444

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
3e5r_O	337	Crystal Structure And Functional Analysis Of Glycer		1e-140
3e6a_O	336	Crystal Structure And Functional Analysis Of Glycer		1e-140
1ihx_A	333	Crystal Structure Of Two D-Glyceraldehyde-3-Phospha		1e-107
1gpd_G	334	Studies Of Asymmetry In The Three-Dimensional Struc		1e-107
4gpd_1	333	The Structure Of Lobster Apo-D-Glyceraldehyde-3-Pho		1e-107
1szj_G	333	Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydr		1e-107
4iq8_A	340	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		1e-106
3pym_A	332	Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Res		1e-106
1u8f_O	335	Crystal Structure Of Human Placental Glyceraldehyde		1e-106
1znq_O	338	Crsytal Structure Of Human Liver Gapdh Length = 338		1e-106
2i5p_O	342	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		1e-106
1dss_G	333	Structure Of Active-Site Carboxymethylated D-Glycer		1e-105
3gpd_R	334	Twinning In Crystals Of Human Skeletal Muscle D-Gly		1e-103
1j0x_O	332	Crystal Structure Of The Rabbit Muscle Glyceraldehy		1e-103
2vyn_D	334	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		1e-98
3h9e_B	346	Crystal Structure Of Human Sperm-Specific Glycerald		1e-98
1vsu_A	359	Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate		1e-98
3cps_A	354	Crystal Structure Of Cryptosporidium Parvum Glycera		1e-98
1s7c_A	331	Crystal Structure Of Mes Buffer Bound Form Of Glyce		5e-98
1gad_O	330	Comparison Of The Structures Of Wild Type And A N31		5e-98
1gae_O	330	Comparison Of The Structures Of Wild Type And A N31		6e-98
3cif_A	359	Crystal Structure Of C153s Mutant Glyceraldehyde 3-		2e-97
2vyn_A	331	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		9e-97
1ywg_O	337	The Structure Of Glyceraldehyde-3-Phosphate Dehydro		7e-94
2b4r_O	345	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		1e-93
3sth_A	361	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		2e-92
1dc4_A	330	Structural Analysis Of Glyceraldehyde 3-Phosphate D		4e-88
2x0n_A	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		2e-83
1k3t_A	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		9e-82
3dmt_C	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		2e-80
1a7k_A	360	Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase		7e-80
1gyp_A	358	Crystal Structure Of Glycosomal Glyceraldehyde-3-Ph		7e-80
1gd1_O	334	Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydr		1e-74
3dbv_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		4e-74
1dbv_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		8e-74
1npt_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		1e-73
1nq5_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		2e-73
1hdg_O	332	The Crystal Structure Of Holo-glyceraldehyde-3-phos		5e-71
3doc_A	335	Crystal Structure Of Trka Glyceraldehyde-3-Phosphat		3e-67
3hja_A	356	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		2e-64
2ep7_A	342	Structural Study Of Project Id Aq_1065 From Aquifex		2e-64
3l0d_A	356	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		1e-63
4dib_A	345	The Crystal Structure Of Glyceraldehyde-3-Phosphate		4e-60
2pkq_O	368	Crystal Structure Of The Photosynthetic A2b2-Glycer		1e-59
3gnq_A	344	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		2e-58
1vc2_A	331	Crystal Structure Of Glyceraldehyde 3-Phosphate Deh		6e-58
1cer_O	331	Determinants Of Enzyme Thermostability Observed In		1e-57
1rm3_O	337	Crystal Structure Of Mutant T33a Of Photosynthetic		2e-57
1nbo_O	337	The Dual Coenzyme Specificity Of Photosynthetic Gly		2e-57
2pkr_O	365	Crystal Structure Of (A+cte)4 Chimeric Form Of Phot		3e-57
1rm5_O	337	Crystal Structure Of Mutant S188a Of Photosynthetic		5e-57
1jn0_O	335	Crystal Structure Of The Non-Regulatory A4 Isoform		1e-56
2g82_O	331	High Resolution Structures Of Thermus Aquaticus Gly		3e-56
3vaz_P	344	Crystal Structure Of Staphylococcal Gapdh1 In A Hex		2e-55
3lvf_P	338	Crystal Structure Of Holo Glyceraldehyde-3-Phosphat		2e-55
3lc7_O	339	Crystal Structure Of Apo Glyceraldehyde-3-Phosphate		4e-55
3k73_Q	336	Crystal Structure Of Phosphate Bound Holo Glycerald		6e-55
3lc1_P	336	Crystal Structure Of H178n Mutant Of Glyceraldehyde		4e-54
1obf_O	335	The Crystal Structure Of Glyceraldehyde 3-Phosphate		6e-54
3hq4_R	336	Crystal Structure Of C151s Mutant Of Glyceraldehyde		8e-54
2d2i_A	380	Crystal Structure Of Nadp-Dependent Glyceraldehyde-		1e-53
3b1j_A	339	Crystal Structure Of Dehydrogenese Length = 339		1e-53
3k9q_Q	336	Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde		1e-53
3ksd_Q	336	Crystal Structure Of C151s+h178n Mutant Of Glyceral		6e-53
3k2b_A	337	Crystal Structure Of Photosynthetic A4 Isoform Glyc		4e-52
2x5j_O	339	Crystal Structure Of The Apoform Of The D-Erythrose		5e-46
2xf8_A	338	Structure Of The D-Erythrose-4-Phosphate Dehydrogen		5e-46
2x5k_O	339	Structure Of An Active Site Mutant Of The D-Erythro		2e-43

>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 337

Iteration: 1
 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/291 (81%), Positives = 258/291 (88%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K
Sbjct: 3   KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 62
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
           +KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT               VV
Sbjct: 63  IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 122
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFV GVNE +Y  ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH+
Sbjct: 123 ISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 182
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTVDV
Sbjct: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDV 242
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVR+EK A+Y+ IK+AIK  SEGKLKGI+GY EED+VSTDFVGDSR
Sbjct: 243 SVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSR 293

>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 336

Iteration: 1
 Score =  495 bits (1274), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/291 (81%), Positives = 258/291 (88%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K
Sbjct: 2   KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 61
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
           +KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT               VV
Sbjct: 62  IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 121
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFV GVNE +Y  ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH+
Sbjct: 122 ISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 181
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTVDV
Sbjct: 182 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDV 241
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVR+EK A+Y+ IK+AIK  SEGKLKGI+GY EED+VSTDFVGDSR
Sbjct: 242 SVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSR 292

>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetry Length = 333

Iteration: 1
 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/289 (66%), Positives = 229/289 (79%), Gaps = 3/289 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL+    ++VAVNDPFI+ +YM YMFKYDS HG +K  E+KV+
Sbjct: 2   KIGINGFGRIGRLVLRTALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKVE 59
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               V+IS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDLTVRL KE +Y++IK A+K  SEG L+G+LGYTE+DVVS DF GD+R
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKTASEGPLQGVLGYTEDDVVSCDFTGDNR 287

>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/289 (66%), Positives = 229/289 (79%), Gaps = 3/289 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL     ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K++
Sbjct: 3   KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKME 60
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               VVIS
Sbjct: 61  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 119
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 120 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 179
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT DVSV
Sbjct: 180 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 239
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDLTVRL KE +Y++IK A+K  SEG L+G LGYTE+DVVS+DF+GD+R
Sbjct: 240 VDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNR 288

>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0 Angstroms Resolution Length = 333

Iteration: 1
 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/289 (66%), Positives = 229/289 (79%), Gaps = 3/289 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL     ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K++
Sbjct: 2   KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKME 59
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               VVIS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT DVSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDLTVRL KE +Y++IK A+K  SEG L+G LGYTE+DVVS+DF+GD+R
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNR 287

>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From Palinurus Versicolor Refined 2.0 Angstrom Resolution Length = 333

Iteration: 1
 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/289 (65%), Positives = 228/289 (78%), Gaps = 3/289 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL+    ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K +
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAE 59
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               V+IS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDLTVRL KE +Y++IK A+K  SEG L+G+LGYTE+DVVS DF GD+R
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNR 287

>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase 3 From Saccharomyces Cerevisiae Length = 340

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/290 (64%), Positives = 224/290 (77%), Gaps = 2/290 (0%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY  YMFKYDS HG++   E+  
Sbjct: 10  VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS- 67
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D+K ++   K +A +  R+P  +PW  +  +  ++STGVF                VVI
Sbjct: 68  HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 127
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           +APS  APMFV+GVNE++Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 128 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 187
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct: 188 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 247
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VVDLTV+L KE TY+EIK  +K  +EGKLKG+LGYTE+ VVS+DF+GDS 
Sbjct: 248 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSH 297

>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution Length = 332

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/290 (64%), Positives = 224/290 (77%), Gaps = 2/290 (0%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY  YMFKYDS HG++   E+  
Sbjct: 2   VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS- 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D+K ++   K +A +  R+P  +PW  +  +  ++STGVF                VVI
Sbjct: 60  HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           +APS  APMFV+GVNE++Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VVDLTV+L KE TY+EIK  +K  +EGKLKG+LGYTE+ VVS+DF+GDS 
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSH 289

>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3- Phosphate Dehydrogenase At 1.75 Resolution Length = 335

Iteration: 1
 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/291 (63%), Positives = 221/291 (75%), Gaps = 2/291 (0%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NGFGRIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++ H  +K
Sbjct: 3   KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 61
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
            ++ K ++ G  P+ +F  R+P +I W   GAEYVVESTGVFT               V+
Sbjct: 62  AENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 120
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPS DAPMFV+GVN ++Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 181 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV 240
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLT RLEK A Y++IK  +K+ SEG LKGILGYTE  VVS+DF  D+ 
Sbjct: 241 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTH 291

>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh Length = 338

Iteration: 1
 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/291 (63%), Positives = 221/291 (75%), Gaps = 2/291 (0%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NGFGRIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++ H  +K
Sbjct: 6   KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 64
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
            ++ K ++ G  P+ +F  R+P +I W   GAEYVVESTGVFT               V+
Sbjct: 65  AENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 123
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPS DAPMFV+GVN ++Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 124 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 183
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 184 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV 243
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLT RLEK A Y++IK  +K+ SEG LKGILGYTE  VVS+DF  D+ 
Sbjct: 244 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTH 294

>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase Isoform 1 From K. Marxianus Length = 342

Iteration: 1
 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/294 (65%), Positives = 227/294 (77%), Gaps = 3/294 (1%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G + + I INGFGRIGRLV R+AL+R ++++VA+NDPFIS DY  YMFKYDS HG++K  
Sbjct: 11  GIQMVSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYK-G 69
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
           E+   D   L+   K VAVF  ++P  +PW K G +  V+STGVF               
Sbjct: 70  EVS-HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAK 128
Query: 123 XVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
            VVI+APSK APMFVVGVNE +Y  E  IVSNASCTTNCLAP+AK+I+D+FGI EGLMTT
Sbjct: 129 KVVITAPSKTAPMFVVGVNEDKYNGE-KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTT 187
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPT
Sbjct: 188 VHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPT 247
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            DVSVVDLTV+L K ATY+EIK A+K+ SEGKLK ++GYTE+ VVS+DF+GD+ 
Sbjct: 248 TDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTH 301

>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated D-Glyceraldehyde-3- Phosphate Dehydrogenase From Palinurus Versicolor Length = 333

Iteration: 1
 Score =  378 bits (971), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/289 (65%), Positives = 227/289 (78%), Gaps = 3/289 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL+    ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K +
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAE 59
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               V+IS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNAS TTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VDLTVRL KE +Y++IK A+K  SEG L+G+LGYTE+DVVS DF GD+R
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNR 287

>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-Glyceraldehyde-3- Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/291 (62%), Positives = 219/291 (75%), Gaps = 2/291 (0%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G++GFGRIGRLV R A     V++VA+NDPFI   YM YMF+YDS HG++ H  +K
Sbjct: 2   KVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVK 60
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
            +D K ++ G K + +F  R+PE I W   G  YVVESTGVFT               +V
Sbjct: 61  AEDGKLVIDG-KAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRIV 119
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPS DAPMFV+GVN  +Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 120 ISAPSADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 179
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVD PS K WRGGR A+ N+IP+STGAAKAVGKV+P L+GKLTGM+FRVPT +V
Sbjct: 180 ITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANV 239
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SV+DLT RLEK A Y++IK  +KE SEG LKGILGYTE++VVS DF G + 
Sbjct: 240 SVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSDDFNGSNH 290

>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) Length = 332

Iteration: 1
 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/290 (63%), Positives = 218/290 (75%), Gaps = 2/290 (0%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+G+NGFGRIGRLV R A     V++VA+NDPFI   YM YMF+YDS HG++ H  +K 
Sbjct: 1   VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKA 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT               V+I
Sbjct: 60  ENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 118
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           SAPS DAPMFV+GVN ++Y   L IVSNAS TTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct: 119 SAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 178
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +VS
Sbjct: 179 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 238
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VVDLT RLEK A Y++IK  +K+ SEG LKGILGYTE+ VVS DF  D+ 
Sbjct: 239 VVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 288

>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 334

Iteration: 1
 Score =  356 bits (913), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/291 (61%), Positives = 219/291 (75%), Gaps = 4/291 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGRLV RV +++  V +VAVNDPFI  +YM YMFKYDS HG++K   ++ 
Sbjct: 2   VKVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GTVEH 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           K+ + L+     + VF  + P+EIPW+  G  YVVE+TGV+                V++
Sbjct: 60  KNGR-LVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIV 118
Query: 127 SAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           +APS DAPM V+GVNEK+Y P  + +VSNAS TTNCLAPLAKVIH++FGIVEGLMTTVH+
Sbjct: 119 TAPSPDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR A  NIIPSSTGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 179 YTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLT RL + A+Y  IK A+K  ++G + GIL YTE+ VVSTDF GDS 
Sbjct: 239 SVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSH 289

>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score =  355 bits (912), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/290 (61%), Positives = 215/290 (74%), Gaps = 8/290 (2%)
Query: 9   IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 25  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               V+IS
Sbjct: 85  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           AP KD  PM+V+GVN  EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT 
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           DVSVVDLT +L K A+ EEI  A+KE S G +KGI+GYT +DVVSTDF+G
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIG 311

>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Glyceraldehyde-3-Phosphate Dehydrogenase Length = 354

Iteration: 1
 Score =  355 bits (911), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/290 (61%), Positives = 215/290 (74%), Gaps = 8/290 (2%)
Query: 9   IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 20  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 79
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               V+IS
Sbjct: 80  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           AP KD  PM+V+GVN  EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 137 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 196
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT 
Sbjct: 197 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 256
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           DVSVVDLT +L K A+ EEI  A+KE S G +KGI+GYT +DVVSTDF+G
Sbjct: 257 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIG 306

>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of Glyceraldehyde 3- Phosphate Dehydrogenase From Escherichia Coli Length = 331

Iteration: 1
 Score =  353 bits (907), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 219/289 (75%), Gaps = 5/289 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV+
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGE 287

>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score =  353 bits (907), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 219/289 (75%), Gaps = 5/289 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV+
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGE 286

>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score =  353 bits (906), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 219/289 (75%), Gaps = 5/289 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV+
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGE 286

>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score =  351 bits (901), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 178/290 (61%), Positives = 214/290 (73%), Gaps = 8/290 (2%)
Query: 9   IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 25  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               V+IS
Sbjct: 85  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           AP KD  PM+V+GVN  EY P + +++SNAS TTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT 
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           DVSVVDLT +L K A+ EEI  A+KE S G +KGI+GYT +DVVSTDF+G
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIG 311

>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 331

Iteration: 1
 Score =  349 bits (896), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 180/289 (62%), Positives = 218/289 (75%), Gaps = 5/289 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV+
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNAS TTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGE 287

>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum Length = 337

Iteration: 1
 Score =  340 bits (871), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 175/292 (59%), Positives = 212/292 (72%), Gaps = 5/292 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           K+GINGFGRIGRLV R A  R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+   E+   
Sbjct: 5   KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHA 63
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   LL GEK V+VF  ++P +IPW K   + V ESTGVF                V++S
Sbjct: 64  D-GFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 122
Query: 128 APSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           AP KD  P++V+G+N  +Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+ 
Sbjct: 123 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 182
Query: 187 TATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG++FRVP   
Sbjct: 183 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 242
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VSVVDL  RL+K A YEE+   IK+ +EG LKGILGYTE++VVS DFV D+R
Sbjct: 243 VSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNR 294

>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum At 2.25 Angstrom Resolution Reveals Intriguing Extra Electron Density In The Active Site Length = 345

Iteration: 1
 Score =  339 bits (870), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 175/292 (59%), Positives = 212/292 (72%), Gaps = 5/292 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           K+GINGFGRIGRLV R A  R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+   E+   
Sbjct: 13  KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHA 71
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   LL GEK V+VF  ++P +IPW K   + V ESTGVF                V++S
Sbjct: 72  D-GFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 130
Query: 128 APSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           AP KD  P++V+G+N  +Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+ 
Sbjct: 131 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 190
Query: 187 TATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG++FRVP   
Sbjct: 191 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 250
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VSVVDL  RL+K A YEE+   IK+ +EG LKGILGYTE++VVS DFV D+R
Sbjct: 251 VSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNR 302

>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Toxoplasma Gondii Length = 361

Iteration: 1
 Score =  335 bits (859), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 177/294 (60%), Positives = 216/294 (73%), Gaps = 6/294 (2%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G    K+GINGFGRIGRLV R A++R DVE++A+NDPF+S DYM Y+ +YDSVHG +   
Sbjct: 20  GSMVCKLGINGFGRIGRLVFRAAMERGDVEVLAINDPFMSLDYMVYLLRYDSVHGHYP-G 78
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
           E+  KD K L+ G K V VF  + P  IPW + G  Y+ ESTG+F               
Sbjct: 79  EVSHKDGK-LIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAK 137
Query: 123 XVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
            V++SAP KD  PMFV+GVN  +YK    IVSNASCTTNCLAPLAK++HDKFGIVEGLMT
Sbjct: 138 KVIMSAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKFGIVEGLMT 197
Query: 182 TVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           TVH++TA Q TVDGPS   KDWR GR+A  NIIP+STGAAKAVGK++P+LNGKLTGM+FR
Sbjct: 198 TVHAMTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFR 257
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKE-ESEGKLKGILGYTEEDVVSTDFV 292
           VP  DVSVVDLT +L K A YE+I  A+KE  + G +KGI+ YT+E+VVS+DFV
Sbjct: 258 VPVPDVSVVDLTCKLAKPAKYEDIVAAVKEAATSGPMKGIISYTDEEVVSSDFV 311

>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate Dehydrogenase From Escherichia Coli: Direct Evidence For Substrate Binding And Cofactor-Induced Conformational Changes Length = 330

Iteration: 1
 Score =  321 bits (822), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 176/289 (60%), Positives = 212/289 (73%), Gaps = 5/289 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DY  Y  KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYXAYXLKYDSTHGRF-DGTVEV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV 
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  P FV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGL TTVH+
Sbjct: 119 TGPSKDNTPXFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTG +FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           SVVDLTVRLEK ATYE+IK A+K  +EG+ KG+LGYTE+DVVSTDF G+
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEXKGVLGYTEDDVVSTDFNGE 286

>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Brucei Determined From Laue Data Length = 359

Iteration: 1
 Score =  305 bits (781), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/304 (53%), Positives = 204/304 (67%), Gaps = 14/304 (4%)
Query: 7   IKIGINGFGRIGRLVARV----ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           IK+GINGFGRIGR+V +      L  +++++VAV D      Y  Y  KYDSVHG++KH+
Sbjct: 3   IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 63  ELK-------VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
                      KD+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT       
Sbjct: 63  VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHDK 172
                   VVISAP S  A  FV+GVN   Y P E  +VSNASCTTNCLAPL  V + + 
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FGI  GLMTTVHS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGM+FRVPT DVSVVDLT    ++ + +EI  A+K  S+  +K ILGYT+E++VS DF+
Sbjct: 243 LTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFI 302
Query: 293 GDSR 296
            DSR
Sbjct: 303 SDSR 306

>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi Complexed With Chalepin, A Coumarin Derivative Inhibitor Length = 359

Iteration: 1
 Score =  300 bits (767), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 160/305 (52%), Positives = 206/305 (67%), Gaps = 16/305 (5%)
Query: 7   IKIGINGFGRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
           IK+GINGFGRIGR+V + AL  D     ++++VAV D     +Y  Y  +YD+VHG++K+
Sbjct: 3   IKVGINGFGRIGRMVFQ-ALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62  NELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX 114
                K       D+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT      
Sbjct: 62  EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 XXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHD 171
                    VVISAP S  A   V+GVN  EY P E  +VSNASCTTNCLAP+  V + +
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKE 181
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNG 231
            FG+  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 232 KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           KLTGMSFRVPT DVSVVDLT    ++ + +EI  A+K  S+  +KGILGYT+E++VS DF
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADF 301
Query: 292 VGDSR 296
           + D+R
Sbjct: 302 INDNR 306

>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi In Complex With The Irreversible Iodoacetate Inhibitor Length = 359

Iteration: 1
 Score =  295 bits (755), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/305 (52%), Positives = 205/305 (67%), Gaps = 16/305 (5%)
Query: 7   IKIGINGFGRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
           IK+GINGFGRIGR+V + AL  D     ++++VAV D     +Y  Y  +YD+VHG++K+
Sbjct: 3   IKVGINGFGRIGRMVFQ-ALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62  NELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX 114
                K       D+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT      
Sbjct: 62  EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 XXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHD 171
                    VVISAP S  A   V+GVN  EY P E  +VSNAS TTNCLAP+  V + +
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKE 181
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNG 231
            FG+  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 232 KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           KLTGMSFRVPT DVSVVDLT    ++ + +EI  A+K  S+  +KGILGYT+E++VS DF
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADF 301
Query: 292 VGDSR 296
           + D+R
Sbjct: 302 INDNR 306

>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic Crystal Form Length = 360

Iteration: 1
 Score =  293 bits (751), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 156/304 (51%), Positives = 205/304 (67%), Gaps = 14/304 (4%)
Query: 7   IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           IK+GINGFGRIGR+V +    +     ++++VAV D   + +Y  Y  K+D+VHG+ K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 63  ELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
              VK   ++       + G +   V   RNP ++PW K G +YV+ESTG+FT       
Sbjct: 63  VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
                   VVISAP S  A   V+GVN+ EY P    +VSNASCTTNCLAP+  V+  + 
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FGI  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGMSFRVPT DVSVVDLT R  ++ + +EI  AIK+ ++  +KGILG+T+E++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFI 302
Query: 293 GDSR 296
            D+R
Sbjct: 303 NDNR 306

>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Leishmania Mexicana: Implications For Structure-Based Drug Design And A New Position For The Inorganic Phosphate Binding Site Length = 358

Iteration: 1
 Score =  293 bits (750), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 156/304 (51%), Positives = 205/304 (67%), Gaps = 14/304 (4%)
Query: 7   IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           IK+GINGFGRIGR+V +    +     ++++VAV D   + +Y  Y  K+D+VHG+ K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 63  ELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
              VK   ++       + G +   V   RNP ++PW K G +YV+ESTG+FT       
Sbjct: 63  VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
                   VVISAP S  A   V+GVN+ EY P    +VSNASCTTNCLAP+  V+  + 
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FGI  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGMSFRVPT DVSVVDLT R  ++ + +EI  AIK+ ++  +KGILG+T+E++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFI 302
Query: 293 GDSR 296
            D+R
Sbjct: 303 NDNR 306

>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus At 1.8 Angstroms Resolution Length = 334

Iteration: 1
 Score =  276 bits (706), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/291 (50%), Positives = 196/291 (67%), Gaps = 6/291 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGST 288

>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu 33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  274 bits (701), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 148/291 (50%), Positives = 196/291 (67%), Gaps = 6/291 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDTG-GANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D  S KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGST 288

>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp 32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  273 bits (698), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 147/291 (50%), Positives = 195/291 (67%), Gaps = 6/291 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVN      + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVNG-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D  S KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGST 288

>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ala Complexed With Nad+ Length = 334

Iteration: 1
 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/291 (50%), Positives = 195/291 (67%), Gaps = 6/291 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGST 288

>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  272 bits (695), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 147/291 (50%), Positives = 195/291 (67%), Gaps = 6/291 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDS 295
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGST 288

>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate Dehydrogenase From The Hyperthermophilic Bacterium Thermotoga Maritima At 2.5 Angstroms Resolution Length = 332

Iteration: 1
 Score =  264 bits (674), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 139/290 (47%), Positives = 193/290 (66%), Gaps = 9/290 (3%)
Query: 8   KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           ++ INGFGRIGRLV R+  +R   D+E+VA+ND    T  + ++ KYDSVH ++     K
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57
Query: 66  VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
           V+  E +L+   K + VF   +P ++PW   G ++V+ESTGVF                V
Sbjct: 58  VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117
Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           +I+AP+K   +  V+G NE + KPE  I+S ASCTTN +AP+ KV+H+KFGIV G++TTV
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTV 177
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HS T  Q+ +D P  KD R  RAA+ NIIP++TGAAKAV  V+P + GKL GM+ RVPT 
Sbjct: 178 HSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTP 236
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           D S+ DLTV +EKE T EE+   +KE +EG+LKGI+GY +E +VS+D +G
Sbjct: 237 DGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIG 286

>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate Dehydrogenase From Brucella Melitensis Length = 335

Iteration: 1
 Score =  251 bits (642), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 135/293 (46%), Positives = 191/293 (65%), Gaps = 7/293 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
           +++ INGFGRIGR + R  ++  R D+++VA+ND     +   ++ +YDSVHG++   E+
Sbjct: 3   VRVAINGFGRIGRNILRAIVESGRTDIQVVAIND-LGPVETNAHLLRYDSVHGRFP-KEV 60
Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
           +V  + T+  G  P+ V   RNP E+PW +   +  +E TG+FT               V
Sbjct: 61  EVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 125 VISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           ++SAP+  A + VV GVN  +   +  ++SNASCTTNCLAP+A+V++D  GI +G MTT+
Sbjct: 120 IVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTI 179
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HS T  Q T+D    KD    RAA+ ++IP+STGAAKAVG VLP L GKL G++ RVPT 
Sbjct: 180 HSYTGDQPTLD-TMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTP 238
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           +VSVVDLT   ++E T EE+ NAI+E + G+LKGILGYT+E +VS DF  DS 
Sbjct: 239 NVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSH 291

>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Borrelia Burgdorferi Length = 356

Iteration: 1
 Score =  242 bits (618), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 137/302 (45%), Positives = 196/302 (64%), Gaps = 13/302 (4%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G   +K+ INGFGRIGR V ++A +R  +++VA+ND       + ++ KYDS  G + + 
Sbjct: 18  GPGSMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVY-NK 74
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX-----XXX 117
           +++ +D   ++ G + + +   R+P+ +PWAK G + V+ESTGVF+              
Sbjct: 75  KVESRDGAIVVDG-REIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVN 133
Query: 118 XXXXXXVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV 176
                 V+++ P+KD     V+GVN+ +   +L  VSNASCTTNCLAPLAKV+H+ FGI 
Sbjct: 134 HAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIE 193
Query: 177 EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM 236
           +GLMTTVH+ T  Q+ +D P   D R  RAA+ +IIP+STGAAKAVG VLP L GKL G 
Sbjct: 194 QGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGT 252
Query: 237 SFRVPTVDVSVVDLTVRL-EKEATYEEIKNAIKEESEG-KLKGILGYTEEDVVSTDFVGD 294
           S RVP    S+VDLTV+L +K+ T EEI + +++ SE  +LKGILGYTE+ +VS+D  G+
Sbjct: 253 SMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGN 312
Query: 295 SR 296
           S 
Sbjct: 313 SH 314

>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex Aeolicus Vf5 Length = 342

Iteration: 1
 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/298 (44%), Positives = 196/298 (65%), Gaps = 14/298 (4%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR   R +  R+++E+VA+ND      ++ ++ KYDSVHG +K   ++ 
Sbjct: 3   IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFK-GSVEA 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD+  ++ G K + VF  ++P +IPW   G + V+E+TGVF                V+I
Sbjct: 61  KDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 127 SAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K+  + VV GVNE++Y P E +I+SNASCTTNCLAP  KV+++ FG+ +G M TVH
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVH 179
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           + T  Q+ +D P  KD+R  RAA+ NI+P++TGAAKA+G+V+P L GKL G + RVP  D
Sbjct: 180 AYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESE-----GK--LKGILGYTEEDVVSTDFVGD 294
            S++DLTV + K  ++ EE+    +E ++     GK  LK IL Y E+ +VSTD VG+
Sbjct: 239 GSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGN 296

>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase From Bartonella Henselae With Bound Nad Length = 356

Iteration: 1
 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 130/292 (44%), Positives = 180/292 (61%), Gaps = 7/292 (2%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           G   +++ INGFGRIGR + R  ++  R D+E+VA+ND   S +   ++ +YDSVHG + 
Sbjct: 20  GSMSVRVAINGFGRIGRNILRAIIESGRQDIEVVALND-LGSVETNAHLLRYDSVHGCFP 78
Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXX 120
                V D   +  G   + VF  R+P ++PW     +  +E TG+FT            
Sbjct: 79  GTVQVVGD--AIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAG 136
Query: 121 XXXVVISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
              V++SAPS+ A + VV GVN +    E  ++SNASCTTNCLAP+A+V+H+  GI +G 
Sbjct: 137 AKRVLVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGF 196
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTT+HS T  Q  +D    +D    RAA+ ++IP+STGAAKAVG VLP L G L G+S R
Sbjct: 197 MTTIHSYTGDQPVLD-TMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIR 255
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           VPT +VSVVDLT   ++  T EEI  AI+  ++G LKGIL YT+E +VS DF
Sbjct: 256 VPTPNVSVVDLTFTAKRSTTIEEINTAIRTAAQGSLKGILDYTDEKLVSCDF 307

>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Anthracis Str. Sterne Length = 345

Iteration: 1
 Score =  228 bits (580), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 129/286 (45%), Positives = 184/286 (64%), Gaps = 6/286 (2%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           ++ INGFGRIGR+V R A++    E+VA+N  + S + + ++ KYD+VHG++       +
Sbjct: 6   RVAINGFGRIGRMVFRQAIKESAFEIVAINASYPS-ETLAHLIKYDTVHGKFDGTVEAFE 64
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   LL   K + +   R+P+E+PW   G E V+E+TG F                V+++
Sbjct: 65  DH--LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILT 122
Query: 128 APSKDAPM-FVVGVNEKEYK-PELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           AP K+  +  VVGVNE +    +  ++SNASCTTNCLAP+ KV+ ++FGI  GLMTTVH+
Sbjct: 123 APGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHA 182
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GM+ RVPT +V
Sbjct: 183 YTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNV 241
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           S+VDL V ++++ T E I +A K  + G LKGI+ ++EE +VS DF
Sbjct: 242 SLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDF 287

>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase, Complexed With Nadp Length = 368

Iteration: 1
 Score =  226 bits (575), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/292 (46%), Positives = 187/292 (64%), Gaps = 9/292 (3%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V VND        T++ KYDS+ G +K  +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K+ D +T     KP+ V   R+P ++PWA+ G + V+E TGVF                
Sbjct: 59  VKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 118
Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+I+AP+K  D P +VVGVNEK+Y  ++ +I+SNASCTTNCLAP  KV+ ++ GIV+G M
Sbjct: 119 VIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTM 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G++ RV
Sbjct: 179 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 237
Query: 241 PTVDVSVVDLTVRLEKEA-TYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           PT +VSVVDL V +EK   T E++ NA ++ + G LKG+L   +  +VS DF
Sbjct: 238 PTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDF 289

>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase, Type I From Burkholderia Pseudomallei Length = 344

Iteration: 1
 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 126/290 (43%), Positives = 176/290 (60%), Gaps = 9/290 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           I++ ING+GRIGR   R   +   + D+E+VA+ND         ++ +YD+ HG++   E
Sbjct: 11  IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAIND-LGDAKTNAHLTQYDTAHGKFP-GE 68
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           + V  +  ++ G++ + V   RNP E+PW + G + V+E TG FT               
Sbjct: 69  VSVDGDYLVVNGDR-IRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKK 127
Query: 124 VVISAPS-KDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
           V+ISAP  KD    +V GVN    K E  ++SNASCTTNCLAPL K ++DK G+  GLMT
Sbjct: 128 VIISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVKPLNDKIGLETGLMT 187
Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241
           T+H+ T  Q   D    +D R  R+A+ + IP+ TGAA AVG VLP LNGKL G + RVP
Sbjct: 188 TIHAYTNDQVLTD-VYHEDLRRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVP 246
Query: 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           T++VS+VDL+   +++ T  E+   +KE SEG LKGILGY E  +VS DF
Sbjct: 247 TINVSIVDLSFIAKRDTTAAEVNAIMKEASEGALKGILGYNEAPLVSIDF 296

>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Thermus Thermophilus Hb8 Length = 331

Iteration: 1
 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/290 (45%), Positives = 180/290 (62%), Gaps = 7/290 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R+  +R  VE+  +ND       + ++ KYDS +G++       
Sbjct: 1   MKVGINGFGRIGRQVFRILHERG-VEVALIND-LTDNKTLAHLLKYDSTYGRFP--GAVG 56
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            DE+ L    K +     ++P EIPW + G   VVESTGVFT               V+I
Sbjct: 57  YDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVII 116
Query: 127 SAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K+  + VV GVN ++Y P +  I+SNASCTTN LAP+ KV+   FG+ + LMTTVH
Sbjct: 117 TAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GM+ RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
            S+ D+T  L++E T EE+  A+K  +EG LKGIL YTE+++V  D V D
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMD 285

>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The Molecular Structure Of Thermus Aquaticus D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5 Angstroms Resolution Length = 331

Iteration: 1
 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/290 (44%), Positives = 181/290 (62%), Gaps = 7/290 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R+ L    VE+  +ND       + ++ KYDS++ ++   E+  
Sbjct: 1   MKVGINGFGRIGRQVFRI-LHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFP-GEVAY 57
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D+   + G K +     ++P+EIPWA+ G   V+ESTGVFT               V+I
Sbjct: 58  DDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K   +  V+GVN + Y P    I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GM+ RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
            S+ D+T  L++E T EE+  A+K  +EG LKGIL YTE+++V  D V D
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMD 285

>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337

Iteration: 1
 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/289 (44%), Positives = 175/289 (60%), Gaps = 6/289 (2%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDF 286

>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By The Crystal Structure Of A4 Isoform Complexed With Nad Length = 337

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 130/289 (44%), Positives = 175/289 (60%), Gaps = 6/289 (2%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDF 286

>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase, Complexed With Nadp Length = 365

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/289 (44%), Positives = 175/289 (60%), Gaps = 6/289 (2%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDF 286

>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337

Iteration: 1
 Score =  218 bits (554), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 129/289 (44%), Positives = 175/289 (60%), Gaps = 6/289 (2%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  + +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-AHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDF 286

>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of Spinach Chloroplast Glyceraldehyde-3-Phosphate Dehydrogenase Complexed With Nadp Length = 335

Iteration: 1
 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/288 (45%), Positives = 176/288 (61%), Gaps = 6/288 (2%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
           K+K+ INGFGRIGR   R    +D  +++V +ND        +++ KYDS+ G +   ++
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-DV 58
Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
           K   +  +  G K + V   RNP  +PW   G + V+E TGVF                V
Sbjct: 59  KTAGDSAISVG-KVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 117
Query: 125 VISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           +I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT 
Sbjct: 118 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 177
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT 
Sbjct: 178 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTP 236
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF
Sbjct: 237 NVSVVDLVVQVSKKTFAEEVNAAFRESADQELKGILSVCDEPLVSIDF 284

>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's Loop Motion In Catalysis Length = 331

Iteration: 1
 Score =  215 bits (547), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/290 (44%), Positives = 180/290 (62%), Gaps = 7/290 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R+ L    VE+  +ND       + ++ KYDS++ ++   E+  
Sbjct: 1   MKVGINGFGRIGRQVFRI-LHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFP-GEVAY 57
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D+   + G K +     ++P+EIPWA+ G   V+ESTGVFT               V+I
Sbjct: 58  DDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K   +  V+GVN + Y P    I+SNAS TTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GM+ RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
            S+ D+T  L++E T EE+  A+K  +EG LKGIL YTE+++V  D V D
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMD 285

>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal Space Group Length = 344

Iteration: 1
 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/294 (42%), Positives = 175/294 (59%), Gaps = 10/294 (3%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G   +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   
Sbjct: 7   GSMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-G 64
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
           E++V D    + G K V  F   +  ++PW     + V+E TG +T              
Sbjct: 65  EVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAK 123
Query: 123 XVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
            V+ISAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMT
Sbjct: 124 KVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMT 183
Query: 182 TVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           T+H+ T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RV
Sbjct: 184 TIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRV 243
Query: 241 PTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           P    S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG
Sbjct: 244 PVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVG 293

>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin Resistant Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution Length = 338

Iteration: 1
 Score =  212 bits (539), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/294 (42%), Positives = 175/294 (59%), Gaps = 10/294 (3%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G   +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   
Sbjct: 1   GSMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-G 58
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
           E++V D    + G K V  F   +  ++PW     + V+E TG +T              
Sbjct: 59  EVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAK 117
Query: 123 XVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
            V+ISAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMT
Sbjct: 118 KVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMT 177
Query: 182 TVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           T+H+ T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RV
Sbjct: 178 TIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRV 237
Query: 241 PTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           P    S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG
Sbjct: 238 PVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVG 287

>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicllin Resistant Staphylococcus Aureus (Mrsa252) Length = 339

Iteration: 1
 Score =  211 bits (537), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 125/290 (43%), Positives = 174/290 (60%), Gaps = 10/290 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 6   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 63
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 64  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 123 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 182
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 183 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 242
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG
Sbjct: 243 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVG 288

>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252 At 2.5 Angstrom Resolution Length = 336

Iteration: 1
 Score =  211 bits (536), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 125/290 (43%), Positives = 174/290 (60%), Gaps = 10/290 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVG 285

>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.0 Angstrom Resolution. Length = 336

Iteration: 1
 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 124/290 (42%), Positives = 174/290 (60%), Gaps = 10/290 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVG 285

>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Alcaligenes Xylosoxidans At 1.7 Resolution. Length = 335

Iteration: 1
 Score =  207 bits (527), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 121/294 (41%), Positives = 172/294 (58%), Gaps = 11/294 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           I++ ING+GRIGR + R   +     D+E+VA+ND         ++ +YD+ HG++    
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFP-GT 59
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           + V     ++ G+K + V   RNP ++PW     + V+E TG FT               
Sbjct: 60  VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 124 VVISAPSK---DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+ISAP     DA + V GVN    K    ++SNAS TTNCLAPL K ++DK G+ +GLM
Sbjct: 119 VIISAPGGADVDATV-VYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLM 177
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ T  Q   D    +D R  R+A+ ++IP+ TGAA AVG VLP L+GKL G + RV
Sbjct: 178 TTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRV 236
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           PT++VS+VDL+   ++  T EE+   +K  SEG+LKGIL Y  E +VS D+  D
Sbjct: 237 PTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHD 290

>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) Complexed With Nad From Staphylococcus Aureus Mrsa252 At 2.2 Angstrom Resolution Length = 336

Iteration: 1
 Score =  207 bits (526), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 124/290 (42%), Positives = 173/290 (59%), Gaps = 10/290 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVG 285

>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3- Phosphate Dehydrogenase From Synechococcus Sp. Complexed With Nadp+ Length = 380

Iteration: 1
 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/294 (43%), Positives = 187/294 (63%), Gaps = 13/294 (4%)
Query: 7   IKIGINGFGRIGRLVARVAL--QRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
           I++ INGFGRIGR   R     Q  D+E+VA+N+   ++D  T  ++ +YDSV G++  N
Sbjct: 3   IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRF--N 57
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
                DE ++    K + +   RNP  +PW +   + V+ESTGVF               
Sbjct: 58  ADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 123 XVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
            V+I+AP K   +  +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 118 KVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G++ R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           VPT +VSVVDL V++EK    E++   +++ S+  +KGI+ Y++  +VS+DF G
Sbjct: 237 VPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRG 290

>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese Length = 339

Iteration: 1
 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/294 (43%), Positives = 187/294 (63%), Gaps = 13/294 (4%)
Query: 7   IKIGINGFGRIGRLVARVAL--QRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
           I++ INGFGRIGR   R     Q  D+E+VA+N+   ++D  T  ++ +YDSV G++  N
Sbjct: 3   IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRF--N 57
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
                DE ++    K + +   RNP  +PW +   + V+ESTGVF               
Sbjct: 58  ADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 123 XVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
            V+I+AP K   +  +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 118 KVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G++ R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
           VPT +VSVVDL V++EK    E++   +++ S+  +KGI+ Y++  +VS+DF G
Sbjct: 237 VPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRG 290

>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde 3-Phosphate Dehydrogenase 1 From Methicillin Resistant Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom Resolution Length = 336

Iteration: 1
 Score =  206 bits (524), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/290 (42%), Positives = 173/290 (59%), Gaps = 10/290 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVG 285

>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2 Angstrom Resolution Length = 336

Iteration: 1
 Score =  204 bits (518), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 123/290 (42%), Positives = 173/290 (59%), Gaps = 10/290 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG 293
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVG 285

>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With Nad, From Arabidopsis Thaliana Length = 337

Iteration: 1
 Score =  201 bits (511), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/289 (44%), Positives = 176/289 (60%), Gaps = 6/289 (2%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +   +
Sbjct: 2   KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-D 59
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   E  +    K + V   RNP  +PW + G + V+E TGVF                
Sbjct: 60  VKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKK 119
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVN   Y  +  I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 120 VIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 179
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 180 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 238
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
            +VSVVDL V++ K+   EE+  A ++ +E +LKGIL   +E +VS DF
Sbjct: 239 PNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDF 287

>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339

Iteration: 1
 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 164/294 (55%), Gaps = 11/294 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 3   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 64  LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
            +V+ E+  LF G+  + V   R+ + +PW + G + V++ TGV+               
Sbjct: 59  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
            V+ S P S D    VV GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           PT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHD 291

>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase From E.Coli In Complex With A Nad Cofactor Analog (3- Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate Anion Length = 338

Iteration: 1
 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 164/294 (55%), Gaps = 11/294 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 2   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 57
Query: 64  LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
            +V+ E+  LF G+  + V   R+ + +PW + G + V++ TGV+               
Sbjct: 58  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 117
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
            V+ S P S D    VV GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +
Sbjct: 118 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 177
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RV
Sbjct: 178 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 236
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           PT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D
Sbjct: 237 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHD 290

>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 162/294 (55%), Gaps = 11/294 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 3   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 64  LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
            +V+ E+  LF G+  + V   R+ + +PW + G + V++ TGV+               
Sbjct: 59  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
            V+ S P S D    VV GVN+ + + E  IVSNAS TTN + P+ K++ D +GI  G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGD 294
           PT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHD 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	0.0
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	0.0
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	0.0
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	0.0
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	0.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	0.0
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	0.0
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	0.0
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	0.0
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	1e-177
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	1e-177
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	1e-176
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	1e-175
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	1e-175
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	1e-172
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	1e-171
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	1e-171
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	1e-168
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	1e-160
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	1e-154
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	1e-153
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	1e-116
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	1e-112
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	1e-107
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	1e-69
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	2e-08
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	3e-07
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	3e-06
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	1e-05
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	3e-05
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	6e-05
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	7e-05
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	7e-05
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	8e-05
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	1e-04
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	1e-04
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	2e-04
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	2e-04
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	3e-04
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	4e-04
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	5e-04
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	6e-04
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	6e-04
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	7e-04
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	8e-04

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Length = 337

 Score =  606 bits (1564), Expect = 0.0
 Identities = 253/296 (85%), Positives = 274/296 (92%), Gaps = 3/296 (1%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           M    KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWK
Sbjct: 1   MG---KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWK 57

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFTDK+KAAAHLKGG
Sbjct: 58  HSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGG 117

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFV GVNE +Y  ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLM
Sbjct: 118 AKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLM 177

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRV
Sbjct: 178 TTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRV 237

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PTVDVSVVDLTVR+EK A+Y+ IK+AIK  SEGKLKGI+GY EED+VSTDFVGDSR
Sbjct: 238 PTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSR 293

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* Length = 332

 Score =  595 bits (1536), Expect = 0.0
 Identities = 192/290 (66%), Positives = 232/290 (80%), Gaps = 2/290 (0%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY  YMFKYDS HG++   E+  
Sbjct: 2   VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAG-EVSH 60

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D+  ++   K +A +  R+P  +PW  +  +  ++STGVF + D A  H+  GAKKVVI
Sbjct: 61  DDKH-IIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119

Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           +APS  APMFV+GVNE++Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179

Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239

Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VVDLTV+L KE TY+EIK  +K  +EGKLKG+LGYTE+ VVS+DF+GDS 
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSH 289

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* Length = 346

 Score =  588 bits (1518), Expect = 0.0
 Identities = 180/297 (60%), Positives = 230/297 (77%), Gaps = 4/297 (1%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           ++  +++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K
Sbjct: 2   VSVARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
              ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+     A+ H+  G
Sbjct: 61  G-SVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAG 118

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
           A++VVISAPS DAPMFV+GVNE +Y P  ++IVSNASCTTNCLAPLAKVIH++FGIVEGL
Sbjct: 119 AQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGL 178

Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTTVHS TATQKTVDGPS K WR GR A  NIIP+STGAAKAV KV+P L GKLTGM+FR
Sbjct: 179 MTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFR 238

Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VPT DVSVVDLT RL + A Y  IK A+K  ++G + GIL YTE++VVSTDF+GD+ 
Sbjct: 239 VPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTH 295

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* Length = 354

 Score =  587 bits (1515), Expect = 0.0
 Identities = 187/295 (63%), Positives = 229/295 (77%), Gaps = 6/295 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           +  +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    ++
Sbjct: 17  QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNG-TVE 75

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           V  +  L    K V VF  ++P EIPW  +GA+ V ESTGVFT ++KA+ HLKGGAKKV+
Sbjct: 76  VSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVI 134

Query: 126 ISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           ISAP KD  PM+V+GVN  EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTV
Sbjct: 135 ISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTV 194

Query: 184 HSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241
           HS+TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGM+ RVP
Sbjct: 195 HSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVP 254

Query: 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           T DVSVVDLT +L K A+ EEI  A+KE S G +KGI+GYT +DVVSTDF+G   
Sbjct: 255 TPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKY 309

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Length = 345

 Score =  584 bits (1509), Expect = 0.0
 Identities = 185/294 (62%), Positives = 225/294 (76%), Gaps = 5/294 (1%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             K+GINGFGRIGRLV R A  R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+   E+ 
Sbjct: 11  ATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPC-EVT 69

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             D   LL GEK V+VF  ++P +IPW K   + V ESTGVF  K+ A++HLKGGAKKV+
Sbjct: 70  HADGF-LLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVI 128

Query: 126 ISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +SAP KD  P++V+G+N  +Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH
Sbjct: 129 MSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVH 188

Query: 185 SITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           + TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG++FRVP 
Sbjct: 189 ASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPI 248

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
             VSVVDL  RL+K A YEE+   IK+ +EG LKGILGYTE++VVS DFV D+R
Sbjct: 249 GTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNR 302

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Length = 330

 Score =  583 bits (1506), Expect = 0.0
 Identities = 187/291 (64%), Positives = 226/291 (77%), Gaps = 5/291 (1%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KD   ++ G K + V   R+P  + W + G + V E+TG+F   + A  H+  GAKKVV+
Sbjct: 60  KDGHLIVNG-KKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+  
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVC 288

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Length = 335

 Score =  583 bits (1504), Expect = 0.0
 Identities = 195/296 (65%), Positives = 232/296 (78%), Gaps = 5/296 (1%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           M    K+K+G+NGFGRIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++ 
Sbjct: 1   MG---KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH 57

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
              +K ++ K L+    P+ +F  R+P +I W   GAEYVVESTGVFT  +KA AHL+GG
Sbjct: 58  G-TVKAENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG 115

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AK+V+ISAPS DAPMFV+GVN ++Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLM
Sbjct: 116 AKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLM 175

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGM+FRV
Sbjct: 176 TTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 235

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PT +VSVVDLT RLEK A Y++IK  +K+ SEG LKGILGYTE  VVS+DF  D+ 
Sbjct: 236 PTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTH 291

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Length = 359

 Score =  572 bits (1476), Expect = 0.0
 Identities = 164/304 (53%), Positives = 215/304 (70%), Gaps = 14/304 (4%)

Query: 7   IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH- 61
           IK+GINGFGRIGR+V +   +      ++++VAV D     +Y  Y  +YD+VHG++K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62

Query: 62  ------NELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA 115
                 +    KD+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT K  A  
Sbjct: 63  VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122

Query: 116 HLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHDK 172
           HL+GGA+KVVISAP+   A   V+GVN  EY P E  +VSNASCTTNCLAP+  V + + 
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182

Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FG+  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242

Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGMSFRVPT DVSVVDLT    ++ + +EI  A+K  S+  +KGILGYT+E++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFI 302

Query: 293 GDSR 296
            D+R
Sbjct: 303 NDNR 306

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Length = 334

 Score =  512 bits (1320), Expect = 0.0
 Identities = 156/292 (53%), Positives = 206/292 (70%), Gaps = 6/292 (2%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            +   L+   K + V   R+PE + W + G + VVESTG FT ++ AA HL+ GAKKV+I
Sbjct: 60  -NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118

Query: 127 SAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+     V+GVN+ +Y P+   ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237

Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G + 
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTV 289

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* Length = 337

 Score =  492 bits (1269), Expect = e-177
 Identities = 136/294 (46%), Positives = 183/294 (62%), Gaps = 6/294 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R    +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF D+D A  HL+ GAKK
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118

Query: 124 VVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K   P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D    +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDAS-HRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF     
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDV 291

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Length = 338

 Score =  490 bits (1264), Expect = e-177
 Identities = 135/293 (46%), Positives = 186/293 (63%), Gaps = 10/293 (3%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 5   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 62

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D        K V  F   +  ++PW     + V+E TG +TDKDKA AH++ GAKKV+I
Sbjct: 63  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121

Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 181

Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 182 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 241

Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG + 
Sbjct: 242 GSLTELTVVLEKQDVTVEQVNEAMKNASN----ESFGYTEDEIVSSDVVGMTY 290

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} Length = 345

 Score =  488 bits (1260), Expect = e-176
 Identities = 136/293 (46%), Positives = 196/293 (66%), Gaps = 6/293 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             ++ INGFGRIGR+V R A++    E+VA+N  +  ++ + ++ KYD+VHG++    ++
Sbjct: 4   MTRVAINGFGRIGRMVFRQAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDG-TVE 61

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
              E  LL   K + +   R+P+E+PW   G E V+E+TG F  K+KA  H++ GAKKV+
Sbjct: 62  A-FEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVI 120

Query: 126 ISAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           ++AP K+     VVGVNE +       ++SNASCTTNCLAP+ KV+ ++FGI  GLMTTV
Sbjct: 121 LTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTV 180

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           H+ T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GM+ RVPT 
Sbjct: 181 HAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 239

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           +VS+VDL V ++++ T E I +A K  + G LKGI+ ++EE +VS DF  ++ 
Sbjct: 240 NVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTH 292

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Length = 331

 Score =  485 bits (1252), Expect = e-175
 Identities = 142/292 (48%), Positives = 192/292 (65%), Gaps = 7/292 (2%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R  L    VE+  +ND       + ++ KYDS++ ++   E+  
Sbjct: 1   MKVGINGFGRIGRQVFR-ILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPG-EVAY 57

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D++ L    K +     ++P+EIPWA+ G   V+ESTGVFTD DKA AHL+GGAKKV+I
Sbjct: 58  -DDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116

Query: 127 SAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K      V+GVN + Y P    I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GM+ RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235

Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            S+ D+T  L++E T EE+  A+K  +EG LKGIL YTE+++V  D V D  
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPH 287

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Length = 342

 Score =  485 bits (1252), Expect = e-175
 Identities = 139/301 (46%), Positives = 206/301 (68%), Gaps = 14/301 (4%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
            IK+GINGFGRIGR   R +  R+++E+VA+ND      ++ ++ KYDSVHG +K   ++
Sbjct: 2   AIKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKG-SVE 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            KD+ +++   K + VF  ++P +IPW   G + V+E+TGVF D++ A+ HL+GGAKKV+
Sbjct: 60  AKDD-SIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118

Query: 126 ISAPSKDA-PMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           I+AP+K+     V+GVNE++Y P E +I+SNASCTTNCLAP  KV+++ FG+ +G M TV
Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTV 178

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           H+ T  Q+ +D P  KD+R  RAA+ NI+P++TGAAKA+G+V+P L GKL G + RVP  
Sbjct: 179 HAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVP 237

Query: 244 DVSVVDLTVRLEKE-ATYEEIKNAIKEESEGK-------LKGILGYTEEDVVSTDFVGDS 295
           D S++DLTV + K  ++ EE+    +E ++         LK IL Y E+ +VSTD VG+ 
Sbjct: 238 DGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNP 297

Query: 296 R 296
            
Sbjct: 298 H 298

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Length = 380

 Score =  481 bits (1240), Expect = e-172
 Identities = 130/296 (43%), Positives = 192/296 (64%), Gaps = 9/296 (3%)

Query: 6   KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
            I++ INGFGRIGR   R    R   D+E+VA+N+         ++ +YDSV G++   +
Sbjct: 2   TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           +   DE ++    K + +   RNP  +PW +   + V+ESTGVF   + A+ H++ GAKK
Sbjct: 60  ISY-DENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118

Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+I+AP K      +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D    +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G++ RV
Sbjct: 179 TTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV 237

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PT +VSVVDL V++EK    E++   +++ S+  +KGI+ Y++  +VS+DF G   
Sbjct: 238 PTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDE 293

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* Length = 339

 Score =  476 bits (1229), Expect = e-171
 Identities = 130/296 (43%), Positives = 192/296 (64%), Gaps = 9/296 (3%)

Query: 6   KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
            I++ INGFGRIGR   R    R   D+E+VA+N+         ++ +YDSV G++   +
Sbjct: 2   TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           +   DE ++    K + +   RNP  +PW +   + V+ESTGVF   + A+ H++ GAKK
Sbjct: 60  ISY-DENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118

Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+I+AP K      +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D    +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G++ RV
Sbjct: 179 TTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV 237

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PT +VSVVDL V++EK    E++   +++ S+  +KGI+ Y++  +VS+DF G   
Sbjct: 238 PTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDE 293

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Length = 356

 Score =  477 bits (1230), Expect = e-171
 Identities = 139/299 (46%), Positives = 198/299 (66%), Gaps = 13/299 (4%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
            +K+ INGFGRIGR V ++A +R  +++VA+ND       + ++ KYDS  G +   +++
Sbjct: 21  SMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVYNK-KVE 77

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA----HLK-GG 120
              +  ++   + + +   R+P+ +PWAK G + V+ESTGVF+           H+   G
Sbjct: 78  S-RDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG 136

Query: 121 AKKVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
           AKKV+++ P+KD     V+GVN+ +   +L  VSNASCTTNCLAPLAKV+H+ FGI +GL
Sbjct: 137 AKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGL 196

Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTTVH+ T  Q+ +D P   D R  RAA+ +IIP+STGAAKAVG VLP L GKL G S R
Sbjct: 197 MTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMR 255

Query: 240 VPTVDVSVVDLTVRLEK-EATYEEIKNAIKEESEG-KLKGILGYTEEDVVSTDFVGDSR 296
           VP    S+VDLTV+L+K + T EEI + +++ SE  +LKGILGYTE+ +VS+D  G+S 
Sbjct: 256 VPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSH 314

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 332

 Score =  468 bits (1208), Expect = e-168
 Identities = 145/292 (49%), Positives = 205/292 (70%), Gaps = 7/292 (2%)

Query: 8   KIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           ++ INGFGRIGRLV R+  +R   D+E+VA+ND    T  + ++ KYDSVH ++   +++
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG-KVE 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
              E +L+   K + VF   +P ++PW   G ++V+ESTGVF +++KA  HL+ GAKKV+
Sbjct: 60  Y-TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI 118

Query: 126 ISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           I+AP+K      V+G NE + KPE  I+S ASCTTN +AP+ KV+H+KFGIV G++TTVH
Sbjct: 119 ITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKAV  V+P + GKL GM+ RVPT D
Sbjct: 179 SYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPD 237

Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            S+ DLTV +EKE T EE+   +KE +EG+LKGI+GY +E +VS+D +G + 
Sbjct: 238 GSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTF 289

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Length = 335

 Score =  448 bits (1155), Expect = e-160
 Identities = 143/294 (48%), Positives = 200/294 (68%), Gaps = 7/294 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
            +++ INGFGRIGR + R  ++  R D+++VA+ND     +   ++ +YDSVHG++   E
Sbjct: 2   AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLG-PVETNAHLLRYDSVHGRFPK-E 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           ++V    T+  G  P+ V   RNP E+PW +   +  +E TG+FT +DKAA HL+ GAK+
Sbjct: 60  VEV-AGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKR 118

Query: 124 VVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V++SAP+  A    V GVN  +   +  ++SNASCTTNCLAP+A+V++D  GI +G MTT
Sbjct: 119 VIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTT 178

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           +HS T  Q T+D    KD    RAA+ ++IP+STGAAKAVG VLP L GKL G++ RVPT
Sbjct: 179 IHSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPT 237

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            +VSVVDLT   ++E T EE+ NAI+E + G+LKGILGYT+E +VS DF  DS 
Sbjct: 238 PNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSH 291

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* Length = 339

 Score =  432 bits (1114), Expect = e-154
 Identities = 103/296 (34%), Positives = 168/296 (56%), Gaps = 9/296 (3%)

Query: 6   KIKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
            +++ INGFGRIGR V R   +     ++ +VA+N+       M ++ KYD+ HG++   
Sbjct: 2   TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELA-DAAGMAHLLKYDTSHGRFAW- 59

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           E++  +   L  G+  + V   R+ + +PW + G + V++ TGV+  ++   AH+  GAK
Sbjct: 60  EVRQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118

Query: 123 KVVISAPSKDA--PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           KV+ S P  +      V GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RV
Sbjct: 179 TTIHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           PT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D  
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPH 293

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Length = 335

 Score =  429 bits (1107), Expect = e-153
 Identities = 129/295 (43%), Positives = 181/295 (61%), Gaps = 9/295 (3%)

Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           I++ ING+GRIGR + R   +     D+E+VA+ND         ++ +YD+ HG++    
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFPG-T 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           + V +   ++     + V   RNP ++PW     + V+E TG FT K+KA AH+KGGAKK
Sbjct: 60  VSV-NGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118

Query: 124 VVISAPSKDA--PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
           V+ISAP         V GVN    K    ++SNASCTTNCLAPL K ++DK G+ +GLMT
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMT 178

Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241
           TVH+ T  Q   D    +D R  R+A+ ++IP+ TGAA AVG VLP L+GKL G + RVP
Sbjct: 179 TVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVP 237

Query: 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
           T++VS+VDL+   ++  T EE+   +K  SEG+LKGIL Y  E +VS D+  D  
Sbjct: 238 TINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPA 292

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337

 Score =  335 bits (862), Expect = e-116
 Identities = 58/293 (19%), Positives = 107/293 (36%), Gaps = 32/293 (10%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             + ING+G +G+ VA    Q+DD++++ V+      +    + K   ++          
Sbjct: 2   KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAI------- 54

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             E+  LF +  + V G  +          A+ V++ T           + + G K +  
Sbjct: 55  -PERVKLFEKAGIEVAGTVDD-----MLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108

Query: 127 SAPSKDAP--MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
                +     F    N +E   + D     SC T  L    K +HD FGI +     V 
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGK-DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVR 167

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVG-KVLPALNGKLTGMSFRVPTV 243
                 +   GP              IIP+        G  V   L+  +  M+  VPT 
Sbjct: 168 RGADPAQVSKGPIN-----------AIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTT 216

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR 296
            +   ++ V +E+  T ++I +  ++      + IL   E+ + ST  + +  
Sbjct: 217 LMHQHNVMVEVEETPTVDDIIDVFEDTP----RVILISAEDGLTSTAEIMEYA 265

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Length = 343

 Score =  327 bits (839), Expect = e-112
 Identities = 57/286 (19%), Positives = 101/286 (35%), Gaps = 23/286 (8%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             K+ ING+G IG+ VA     +DD+E++ V       D+   +    +V   +K     
Sbjct: 2   PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTK--TKPDFEARL----AVEKGYKLFVAI 55

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             +E+  LF +      G      I      A+ VV+       K       K    K +
Sbjct: 56  PDNERVKLFEDA-----GIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKPHKVKAI 110

Query: 126 ISAPSKDA---PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           +    K       F    +      + D V   SC T  L  +   I+    I +  +  
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGK-DYVRVVSCNTTGLCRILYAINSIADIKKARIVL 169

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           V           GP         A + N +   +     V  V+P   GK+   +  VPT
Sbjct: 170 VRRAADPNDDKTGPV-------NAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPT 222

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVV 287
             + +  L V ++ + + ++I  AIK+      ++   G++    +
Sbjct: 223 TLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKI 268

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Length = 334

 Score =  312 bits (802), Expect = e-107
 Identities = 57/272 (20%), Positives = 97/272 (35%), Gaps = 29/272 (10%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NG+G IG+ VA    ++DD+EL+ +       D+  Y  K   +       E  
Sbjct: 2   KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            + EK            GF     +       + +V++T           + K G K + 
Sbjct: 60  PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108

Query: 126 ISAPSKDAP--MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
                 D     FV   N +    + + V   SC T  L      I +    V  +M   
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGK-NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRR 167

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
            +     K          RG   A    +   +     V  V+P     +  M+F VPT 
Sbjct: 168 AADPNDTK----------RGPINAIKPTVEVPSHHGPDVQTVIP---INIETMAFVVPTT 214

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 275
            + V  + V L+K  T +++ +  +  +   L
Sbjct: 215 LMHVHSVMVELKKPLTKDDVIDIFENTTRVLL 246

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Length = 340

 Score =  218 bits (555), Expect = 1e-69
 Identities = 45/290 (15%), Positives = 95/290 (32%), Gaps = 28/290 (9%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           + + +NG+G IG+ VA   +++ D++LV V     S +Y  ++     +        + V
Sbjct: 2   VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAK--TSPNYEAFIAHRRGIR-------IYV 52

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             +    F E  + V G      +      ++ VV++T           +L+     +  
Sbjct: 53  PQQSIKKFEESGIPVAG-----TVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107

Query: 127 SAPSKDAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
                +             +      +   SC T  L      ++    + +   T V  
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRR 167

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
               ++   GP               +PS    AK V  V+   N  +  M+   PT  +
Sbjct: 168 AADQKEVKKGPI-----NSLVPDPATVPSHH--AKDVNSVIR--NLDIATMAVIAPTTLM 218

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESE----GKLKGILGYTEEDVVSTDF 291
            +  + + L+ +   ++I + ++                  E   V+ D 
Sbjct: 219 HMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDL 268

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Length = 304

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38
          M  DKKI+  I G+G IGR   +   +  D E+  +  
Sbjct: 4  MTDDKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVR 41

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Length = 320

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 5  KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
            I++ I G+G +GR V ++  ++ D++LV +
Sbjct: 2  TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGI 33

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Length = 350

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 60/240 (25%)

Query: 75  GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT-----------DKDKAAAHLKGGAKK 123
           G+K      +    +IP  +   +  + ST                 + A +      K 
Sbjct: 43  GKKYKDAVKWIEQGDIP--EEVQDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKN 100

Query: 124 --VVISAPS-----KDAPMFVVGVN----------EKEYKPELDIVSNASCTTNCLAPLA 166
             +V+S  S      D P+    +N          ++    +  +V N +CT   ++   
Sbjct: 101 GKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPI 160

Query: 167 KVIHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASFNIIP--------SSTG 217
           K + +     + ++TT+ +++ A    +   ++           NIIP         +  
Sbjct: 161 KPLIEIATKSKIIITTLQAVSGAGYNGISFMAI---------EGNIIPYIKGEEDKIAKE 211

Query: 218 AAKAVG-----KVLPALNGKLTGMSFRVPTVD---VSVVDLTVRLEKEATYEEIKNAIKE 269
             K  G     +++PA N   T  S RVPT       +    +   +    EEIK  +K 
Sbjct: 212 LTKLNGKLENNQIIPA-NLDSTVTSIRVPTRVGHMGVI---NIVTNERINIEEIKKTLKN 267

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Length = 315

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
           A +  +++ + G GR G+   R         LV +    
Sbjct: 5  PANNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSN 44

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Length = 346

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 1  MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
          +   K ++  I G GR+G      +  +   V+LVA     
Sbjct: 3  VTTRKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD 43

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Length = 294

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
          +    K  + + G GR G +  R          + +   
Sbjct: 2  ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Length = 308

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 5  KKIKIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39
          K IK+G+ G G I +     +  + +  E V    P
Sbjct: 5  KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP 40

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Length = 344

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 5  KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
            ++I + G GRIG + A       D+ELV + DPF
Sbjct: 3  LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPF 38

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 26/148 (17%)

Query: 4   DKKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQ 58
           D  I++ I G  GR+GR + + AL  + V+L A         + +D              
Sbjct: 3   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGA------- 55

Query: 59  WKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKA 113
                + V+     +  +  V    F  PE          + G   V+ +TG F +  K 
Sbjct: 56  -GKTGVTVQSSLDAVKDDFDV-FIDFTRPEGTLNHLAFCRQHGKGMVIGTTG-FDEAGKQ 112

Query: 114 AAHLKGGAKKVVISAPSKDAPMFVVGVN 141
           A  ++  A  + I      A  F VGVN
Sbjct: 113 A--IRDAAADIAIVF----AANFSVGVN 134

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Length = 319

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 5  KKIKIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39
          KK++IG+ G G I +     V     D  L     P
Sbjct: 4  KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP 39

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} Length = 354

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 43/198 (21%)

Query: 124 VVISAPS-----KDAPMFVVGVN----------EKEYKPELDIVSNASCTTNCLAPLAKV 168
           ++ S  S     +D P+ +  VN           ++   +  I++N +C+T C     K 
Sbjct: 109 LIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKP 168

Query: 169 IHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASFNIIP--------SSTGAA 219
           I DKFG+    + T+ +++ A    V   ++           N+IP          T + 
Sbjct: 169 IMDKFGLEAVFIATMQAVSGAGYNGVPSMAI---------LDNLIPFIKNEEEKMQTESL 219

Query: 220 KAVGKVLPAL----NGKLTGMSFRVPTVD---VSVVDLTVRLEKEATYEEIKNAIKEESE 272
           K +G +        N K++    RV  +D    S+    V+ ++ A  EEIK  + +   
Sbjct: 220 KLLGTLKDGKVELANFKISASCNRVAVIDGHTESI---FVKTKEGAEPEEIKEVMDKFDP 276

Query: 273 GKLKGILGYTEEDVVSTD 290
            K   +  Y +  V+  +
Sbjct: 277 LKDLNLPTYAKPIVIREE 294

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 26/147 (17%)

Query: 5   KKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQW 59
             +++ + G  GR+GR +     +R DVEL AV       F+  D    +          
Sbjct: 20  GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGS-------- 71

Query: 60  KHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKAA 114
               +++ D+    F      +  F  P+         A+    +++ +TG F+  ++A 
Sbjct: 72  DFLGVRITDDPESAFSNTEG-ILDFSQPQASVLYANYAAQKSLIHIIGTTG-FSKTEEAQ 129

Query: 115 AHLKGGAKKVVISAPSKDAPMFVVGVN 141
             +   AK   I      +    +GVN
Sbjct: 130 --IADFAKYTTIVK----SGNMSLGVN 150

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Length = 357

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 1  MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
                +K GI G G IG   + R+A     VE+VAV D  
Sbjct: 18 YFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV 58

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Length = 444

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 4  DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
           KK++I     G  G+       +RDDVE+VA  DP
Sbjct: 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Length = 344

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 6  KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
           ++IG+ G G IG+  + R+  +    E+VAV D  
Sbjct: 2  SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN 37

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Length = 354

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 5  KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
            + +   G GR   ++A    + + ++LV     
Sbjct: 4  NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR 38

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} Length = 243

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 30/140 (21%)

Query: 5   KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
             +KI + G+G + + VAR+A +    E+V V +                          
Sbjct: 2   ASMKILLIGYGAMNQRVARLA-EEKGHEIVGVIENT-------------------PKATT 41

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPE---EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121
             +  + +   +       F NP     +         VV +TG   +K      L   +
Sbjct: 42  PYQQYQHIADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTG-EKEKLLNK--LDELS 98

Query: 122 KKVVISAPSKDAPMFVVGVN 141
           + + +      +     GV+
Sbjct: 99  QNMPVFF----SANMSYGVH 114

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 6  KIKIGINGFGRIGRLVARVALQR-DDVELVAVNDP 39
          KI+ GI G G  G ++   A++   D ++VA  DP
Sbjct: 2  KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDP 36

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Length = 236

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 8  KIGINGFGRIGRLVARVALQRDDVELVAVND 38
           +G+ G+G IG+ +A   L+R+  E+ A+ D
Sbjct: 2  LVGLIGYGAIGKFLAE-WLERNGFEIAAILD 31

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 27/147 (18%)

Query: 5   KKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQW 59
             +KI I G  GR+GR++    L   D  LV        P +  D   ++          
Sbjct: 6   SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFL---------G 56

Query: 60  KHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKAA 114
           K   + + D+   +   +   +  F  PE          +   + V+ +TG F++  KA 
Sbjct: 57  KQTGVALTDDIERVC-AEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTG-FSEPQKAQ 114

Query: 115 AHLKGGAKKVVISAPSKDAPMFVVGVN 141
             L+   +K+ +      +    VGVN
Sbjct: 115 --LRAAGEKIALVF----SANMSVGVN 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	100.0
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	100.0
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	100.0
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	100.0
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	100.0
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	100.0
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	100.0
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	100.0
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	100.0
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	100.0
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	100.0
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	100.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	100.0
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	100.0
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	100.0
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	100.0
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	100.0
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	100.0
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	100.0
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	100.0
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	100.0
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	100.0
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	100.0
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	100.0
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	100.0
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	100.0
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	100.0
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	100.0
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	100.0
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	100.0
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	100.0
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	100.0
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	100.0
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	100.0
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	100.0
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	100.0
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	100.0
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	100.0
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	100.0
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	100.0
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	100.0
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	100.0
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	100.0
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	100.0
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	99.37
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.73
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.66
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.64
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.64
4had_A	350	Probable oxidoreductase protein; structural genomi	98.63
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.6
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.6
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.59
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.58
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	98.58
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.58
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.57
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.56
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.56
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.55
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.55
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.53
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.53
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.52
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.5
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.48
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.48
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.48
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.47
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.45
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.45
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.42
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.39
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.39
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.39
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.36
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.34
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	98.31
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.31
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.31
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.29
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.29
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.28
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.27
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.26
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.24
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.21
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.21
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	98.19
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.19
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.19
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	98.18
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.18
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.17
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	98.17
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.16
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.11
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.11
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.11
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.09
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	98.08
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.05
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.99
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.97
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.97
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.96
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.95
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.87
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.86
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.76
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.76
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.74
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.72
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.71
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	97.69
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.61
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.56
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.38
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.33
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.16
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.14
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	97.13
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.1
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.07
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	96.95
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.86
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.79
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.79
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.79
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.76
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.68
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.66
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.63
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.62
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.54
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.44
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	96.43
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.42
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.4
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.39
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.37
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.36
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.36
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.35
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	96.34
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.33
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.18
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.17
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.17
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.16
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.15
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.14
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.14
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.11
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.09
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.09
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.08
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.07
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.06
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.02
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.98
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.97
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.95
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.93
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	95.92
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.87
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.83
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	95.81
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.8
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.79
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.78
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.74
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.69
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.68
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.63
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.6
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.56
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.53
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.53
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.53
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.53
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.52
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.49
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.46
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.43
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.42
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.37
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.36
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.36
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.32
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.3
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.25
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.24
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.24
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.22
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.22
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.17
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.12
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.1
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.08
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.07
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.99
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	94.95
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.92
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.92
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.91
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.89
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.89
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.86
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	94.83
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.81
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.79
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.71
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.62
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	94.6
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.54
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.54
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.52
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	94.5
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	94.41
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	94.41
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	94.39
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.39
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	94.34
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.33
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.31
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.24
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	94.23
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	94.18
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.15
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.15
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.12
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.11
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	94.06
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	94.05
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.98
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.94
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.9
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.81
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.78
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.78
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.74
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	93.7
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.69
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.69
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.65
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.64
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.63
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	93.6
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	93.6
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	93.54
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.54
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	93.54
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	93.54
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.42
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	93.39
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	93.35
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	93.33
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.27
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.24
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.16
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	93.13
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	92.97
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	92.96
2csu_A	457	457AA long hypothetical protein; structural genomi	92.95
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.78
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	92.77
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	92.68
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	92.62
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	92.59
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	92.5
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	92.28
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	92.24
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	92.24
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	92.23
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	92.16
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.11
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.06
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	91.93
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	91.83
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	91.65
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	91.59
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.55
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.41
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.36
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	91.35
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	91.19
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	91.07
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	91.06
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	91.04
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	91.02
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	90.98
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	90.73
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	90.65
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	90.54
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	90.47
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	90.44
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.16
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	90.16
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	90.07
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	90.03
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	90.0
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	89.92
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	89.88
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.86
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	89.86
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	89.76
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	89.68
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	89.56
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	89.54
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	89.16
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	89.14
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	89.05
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	88.91
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	88.85
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	88.8
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	88.67
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	88.61
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	88.39
1id1_A	153	Putative potassium channel protein; RCK domain, E.	88.36
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	88.13
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	88.12
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	88.12
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	88.02
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	87.91
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	87.91
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	87.71
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	87.71
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	87.69
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	87.69
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	87.65
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	87.52
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	87.44
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	87.41
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	87.38
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	87.33
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	87.07
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	87.05
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	86.77
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	86.77
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	86.74
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	86.71
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	86.69
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	86.65
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	86.49
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	86.43
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	86.05
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	85.92
1xq6_A	253	Unknown protein; structural genomics, protein stru	85.89
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	85.76
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	85.66
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	85.47
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	85.38
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	85.24
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	84.91
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	84.82
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	84.66
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	84.49
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	84.49
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	84.45
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	84.37
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	84.32
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	84.26
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	84.2
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	83.99
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	83.92
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	83.87
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	83.85
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	83.8
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	83.74
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	83.33
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	82.73
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	82.72
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	82.71
3tl2_A	315	Malate dehydrogenase; center for structural genomi	82.31
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	82.19
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	82.11
4hb9_A	412	Similarities with probable monooxygenase; flavin,	82.08
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	82.01
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	82.01
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	81.99
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	81.91
3c85_A	183	Putative glutathione-regulated potassium-efflux S	81.86
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	81.81
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	81.75
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	81.1
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	81.07
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	80.73
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	80.33
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	80.15
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	80.12
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	80.12
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	80.04

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=100.00  E-value=5.3e-81  Score=566.24  Aligned_cols=289  Identities=66%  Similarity=1.084  Sum_probs=279.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |+||||||||||||.++|++.+++++|+|+|||++.+.++++|+|+|||+||+|+ ++++.+++ .|.+||+.|++++++
T Consensus         1 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~e~   78 (332)
T 3pym_A            1 MVRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVSHDDK-HIIVDGKKIATYQER   78 (332)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCC-CcEEEcCC-EEEECCEEEEEEeec
Confidence            3799999999999999999999999999999998779999999999999999999 98888766 699999999999989


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHhH
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPL  165 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~  165 (296)
                      ||++++|.+.++|+||||||.++++++++.|+++|+|+|+||+|++|+|++|||+|++.|++..+|||||||+|+||+|+
T Consensus        79 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~~IISnasCTTn~Lap~  158 (332)
T 3pym_A           79 DPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPL  158 (332)
T ss_dssp             SGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHHHH
T ss_pred             ccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCCCCeEeeccchhhcCccccEEecCcchhhhhHHH
Confidence            99999999899999999999999999999999999999999999988999999999999986679999999999999999


Q ss_pred             HHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCce
Q 022491          166 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV  245 (296)
Q Consensus       166 l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~g  245 (296)
                      ++||+++|||++++|||+|++|++|+.+|++++++||++|++++|+||+.+|+++++.+++|||+++++++|+|||+++|
T Consensus       159 lkvL~d~fGI~~g~mTTvha~T~~Q~~vDg~~~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~  238 (332)
T 3pym_A          159 AKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDV  238 (332)
T ss_dssp             HHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCTGGGSCGGGCCEEEECSHHHHHHHHSGGGTTSEEEEEEEESCSSC
T ss_pred             HHHHHHhcCeEEEEEEEEeeccccchhccCCCcccCccccchhhcccCCCCChHHHHHHhhhhhcCCEEEEEEEcCCCCc
Confidence            99999999999999999999999999999998789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       246 ~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |+.+++++++++++.||++++++++++++|||||+|+|+|+||+||+||||
T Consensus       239 s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~  289 (332)
T 3pym_A          239 SVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSH  289 (332)
T ss_dssp             EEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             EeeEEEEEECCcCCHHHHHHHHHHhccCccCceeEEEcCCeEeeccCCCCc
Confidence            999999999999999999999999999999999999999999999999997

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=100.00  E-value=1.6e-80  Score=564.22  Aligned_cols=289  Identities=87%  Similarity=1.326  Sum_probs=279.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCc-ceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~-~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||||||||||||.++|++.+++++|+|+|||++.++++++|+|+|||+||+|+ + +++.++++.|.+||+.|++++++
T Consensus         4 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~-~~~v~~~~~~~l~i~Gk~I~v~~e~   82 (337)
T 3v1y_O            4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWK-HSDIKIKDSKTLLLGEKPVTVFGIR   82 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCC-SSCEEEEETTEEEETTEEEEEECCS
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCccc-CceEEEcCCcEEEECCEEEEEEEec
Confidence            899999999999999999999999999999998789999999999999999999 8 88887663599999999999989


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHhH
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPL  165 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~  165 (296)
                      ||++++|.+.++|+||||||.++++++++.|+++|+|+|+||+|++|+|++|||+|++.|++..+|||||||+|+||+|+
T Consensus        83 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~~IISnasCTTn~Lap~  162 (337)
T 3v1y_O           83 NPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPL  162 (337)
T ss_dssp             SGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHHHH
T ss_pred             CcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeECCCCCHHHcCCCCcEEecCchhhhhHHHH
Confidence            99999998889999999999999999999999999999999999999999999999999986678999999999999999


Q ss_pred             HHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCce
Q 022491          166 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV  245 (296)
Q Consensus       166 l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~g  245 (296)
                      ++||+++|||++++|||+|++|++|+.+|++++++||++|++++|+||+.+|+++++.+++||++++++++|+|||+++|
T Consensus       163 lkvL~d~fGI~~g~mTTvha~T~~q~~~Dg~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~  242 (337)
T 3v1y_O          163 AKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDV  242 (337)
T ss_dssp             HHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCTTCGGGGSBGGGCCEEEECCHHHHHHHHSGGGTTSEEEEEEECSCSSC
T ss_pred             HHHHHHhcCeEEEEEeeeeeccchhhhccCCccccccccccccceeecCCCChHHHHHHhccccCCcEEEEEEEcCCCCc
Confidence            99999999999999999999999999999998789999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       246 ~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |+.+++++++++++.||++++++++++++|||||+|+|+|+||+||+||||
T Consensus       243 s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~  293 (337)
T 3v1y_O          243 SVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSR  293 (337)
T ss_dssp             EEEEEEEEESSCCCHHHHHHHHHHHHHTTTBTTEEEECSCCCGGGGTTCCC
T ss_pred             EEEEEEEEECCCCcHHHHHHHHHHhccCccCCeeEEEcCCEEeeccCCCCc
Confidence            999999999999999999999999999999999999999999999999997

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=100.00  E-value=5.3e-80  Score=560.32  Aligned_cols=288  Identities=49%  Similarity=0.810  Sum_probs=277.4

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |++||||||||||||.++|++.++  +++|+|+|||+ .+.++++|+|+|||+||+|+ ++++.+++ .|.+||+.|+++
T Consensus         1 m~~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~-~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~   77 (335)
T 3doc_A            1 MAVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDL-GPVETNAHLLRYDSVHGRFP-KEVEVAGD-TIDVGYGPIKVH   77 (335)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCCEECSS-EEESSSSEEEEE
T ss_pred             CCEEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCC-CCHHHHHHHhcccCCCCCCC-CeEEEecC-EEEECCEEEEEE
Confidence            568999999999999999999987  78999999999 79999999999999999999 88887665 699999999999


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhh
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNC  161 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~ta  161 (296)
                      +++||++++|.+.++|+||||||.|+++++++.|+++|+|+|+||+|+.| +|++|||+|++.|++..+|||||||+|+|
T Consensus        78 ~e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~~~~~~~IISNasCTTn~  157 (335)
T 3doc_A           78 AVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNC  157 (335)
T ss_dssp             CCSSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGGCCTTCCEEECCCHHHHH
T ss_pred             eecccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHHhCccCCeEecCchhhhh
Confidence            98999999999899999999999999999999999999999999999886 79999999999998667899999999999


Q ss_pred             hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      |+|+++||+++|||++++|||+|++|++|+++|+++ ++||++|++++|++|+.+|+++++.+++||++++++++|+|||
T Consensus       158 Lap~lk~L~d~fGI~~g~mTTvha~T~~q~~~D~p~-kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVP  236 (335)
T 3doc_A          158 LAPVAQVLNDTIGIEKGFMTTIHSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVP  236 (335)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCC-SSTTTTSCTTSSCEEEECCHHHHHHHHSGGGTTCEEEEEEEES
T ss_pred             hHHhHHHHHHHcCEEEEEEEeeeeccchhhhhcCcc-ccccccccCcceEecCCCchHHHHHHhccccCCCEEEEEEEec
Confidence            999999999999999999999999999999999987 6999999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +++||+.+++++++++++.||++++++++++++|||||+|+|+|+||+||+||||
T Consensus       237 v~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~  291 (335)
T 3doc_A          237 TPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSH  291 (335)
T ss_dssp             CSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             cccccceEEEEEECCCCCHHHHHHHHHHhhcCCcCCeeEEEcCCeEeeeeCCCCC
Confidence            9999999999999999999999999999999999999999999999999999997

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=100.00  E-value=4.5e-80  Score=564.03  Aligned_cols=291  Identities=56%  Similarity=0.942  Sum_probs=278.6

Q ss_pred             CeeEEEEEecCHHHHHHHHH----HHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeee-------CCceeE
Q 022491            5 KKIKIGINGFGRIGRLVARV----ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK-------DEKTLL   73 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~----l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~-------~~~~l~   73 (296)
                      |++||||||||||||.++|+    +.+++++|+|+|||+..++++++|+|+|||+||+|+ ++++..       +++.|.
T Consensus         1 m~~kv~INGFGrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~-~~v~~~~~~~~~~~~~~l~   79 (359)
T 3ids_C            1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK-YEVTTTKSSPSVAKDDTLV   79 (359)
T ss_dssp             CCEEEEEECTTHHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECS-SCEEEECSCTTSSSCCEEE
T ss_pred             CceEEEEECCChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEe-eEEEecccccccCCCCEEE
Confidence            56899999999999999999    778889999999997689999999999999999999 888872       444799


Q ss_pred             ECCEEEEEEe-cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCC-CCC
Q 022491           74 FGEKPVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELD  150 (296)
Q Consensus        74 ~~~~~i~~~~-~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~-~~~  150 (296)
                      +||+.|++++ +.+|++++|.+.++|+||+|||.|+++++++.|+++|+|+|+||+|++ |+|++|||+|++.|++ ..+
T Consensus        80 inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~~  159 (359)
T 3ids_C           80 VNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHH  159 (359)
T ss_dssp             ETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTGGGCCTTTCS
T ss_pred             ECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCHHHcCCCCCC
Confidence            9999999998 889999999888999999999999999999999999999999999988 6999999999999986 679


Q ss_pred             eEEcCCcchhhhHhHHHHH-HhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhcccc
Q 022491          151 IVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPAL  229 (296)
Q Consensus       151 iIs~p~C~~tal~~~l~~L-~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel  229 (296)
                      |||||||+|+||+|+++|| +++|||++++|||+|++|++|+++|++++++||++|++++|+||+.+|+++++.+++||+
T Consensus       160 IISNaSCTTn~Lap~lkvL~~d~fGI~~g~mTTvha~T~tQ~~vD~~~~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL  239 (359)
T 3ids_C          160 VVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST  239 (359)
T ss_dssp             EEECCCHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCCTTCTGGGSBGGGCCEEEECSHHHHHHHHSGGG
T ss_pred             EEECCchHhhhHHHhhhhhhhccCCeEEEEEeeeeeccchhhhhcCCccccccccccCcceeEccCCchHHHHhhhchhh
Confidence            9999999999999999999 999999999999999999999999999878999999999999999999999999999999


Q ss_pred             CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          230 NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       230 ~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +++++++|+|||+++||+.+++++++++++.||++++++++++++|||||+|+|+|+||+||+||||
T Consensus       240 ~gkltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~  306 (359)
T 3ids_C          240 QGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNR  306 (359)
T ss_dssp             TTSEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCS
T ss_pred             cCceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHHHhccCccCCceeEecCCEEeeecCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999997

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=100.00  E-value=7.7e-80  Score=559.81  Aligned_cols=287  Identities=47%  Similarity=0.810  Sum_probs=265.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |+||||||||||||.++|++.+++++|+|+|||+ .+.++++|+|+|||+||+|+ ++++.+++ .|.+||+.|++++++
T Consensus         4 ~~kv~INGfGrIGr~v~Ra~~~~~~~~ivaINd~-~d~~~~a~llkyDS~hG~f~-~~v~~~~~-~l~inGk~I~v~~e~   80 (345)
T 4dib_A            4 MTRVAINGFGRIGRMVFRQAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKMIRLLNNR   80 (345)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTCSSSEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             cEEEEEECCCcHHHHHHHHHHhCCCceEEEEcCC-CCHHHHHHHhcccCCCCCCC-CcEEEcCC-EEEECCEEEEEeecC
Confidence            4899999999999999999999999999999999 79999999999999999999 88888766 699999999999989


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCC-CCCeEEcCCcchhhhH
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLA  163 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~-~~~iIs~p~C~~tal~  163 (296)
                      ||++++|.+.++|+||||||.|+++++++.|+++|+|+|+||+|++ ++|++|||+|++.|++ ..+|||||||+|+||+
T Consensus        81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~~IISNaSCTTn~La  160 (345)
T 4dib_A           81 DPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLA  160 (345)
T ss_dssp             CGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCSEEECCCHHHHHHH
T ss_pred             ChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHcCcccCeEEECCchhhhhhH
Confidence            9999999989999999999999999999999999999999999987 5899999999999985 5789999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeC
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~  243 (296)
                      |+++||+++|||++++|||+|++|++|+++|+++ ++||++|++++|++|+.+|+++++.+++||++++++++|+|||++
T Consensus       161 p~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~-kd~r~~r~aa~NIIP~~tGaakav~kVlPeL~gkltg~avRVPv~  239 (345)
T 4dib_A          161 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP  239 (345)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEECC--------------CCTTSCTTTCCEEECCTHHHHHHHHCGGGTTTEEEEEEECCCS
T ss_pred             HHHHHHHHhcCeEEEEEEeeeeccCCceeccccc-cccccchhhhhceecCCCchHHHHhhhccccCCcEEEEEEEccCc
Confidence            9999999999999999999999999999999988 799999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       244 ~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +||+.+++++++++++.||++++++++++++|||||+|+|+|+||+||+||||
T Consensus       240 ~~s~~dlt~~lek~~t~eei~~~lk~As~g~lkgil~yte~~~VS~Df~~~~~  292 (345)
T 4dib_A          240 NVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTH  292 (345)
T ss_dssp             SEEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             ccEEEEEEEEECCCCCHHHHHHHHHHhhcCcccceeeeEcCcEeeeecCCCCc
Confidence            99999999999999999999999999999999999999999999999999997

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=100.00  E-value=2.3e-79  Score=558.29  Aligned_cols=288  Identities=63%  Similarity=1.057  Sum_probs=278.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||||||||||.++|++.+++ +|+++|||++.+.++++|+|+|||+||+|+ ++++.+++ .|.+||+.|+++++.
T Consensus         7 ~~kvgInGFGRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~e~   83 (346)
T 3h9e_O            7 ELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNG-QLVVDNHEISVYQCK   83 (346)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             eeEEEEECCChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCC-CcEEEcCC-EEEECCEEEEEEecC
Confidence            489999999999999999999887 999999998789999999999999999999 99888766 699999999999989


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCC-CCCeEEcCCcchhhhHh
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAP  164 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~-~~~iIs~p~C~~tal~~  164 (296)
                      ||++++|.+.++|+||||||.++++++++.|+++|+||+|||+|++|+|++|||+|++.|++ ..+|||||||+|+||+|
T Consensus        84 dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d~plvV~gVN~~~~~~~~~~IISNasCTTn~Lap  163 (346)
T 3h9e_O           84 EPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAP  163 (346)
T ss_dssp             SGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTTCSEEECCCHHHHHHHH
T ss_pred             ChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeeCcccCHHHcCcccCCEEECCcchhhhHHH
Confidence            99999999889999999999999999999999999999999999999999999999999985 67999999999999999


Q ss_pred             HHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCc
Q 022491          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (296)
Q Consensus       165 ~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~  244 (296)
                      +++||+++|||++++|||+|++|++|+++|++++++||++|++++|+||+.+|.+++..+++|||+++++++|+|||+++
T Consensus       164 ~lkvL~d~fGI~~g~mTTvhA~T~tQ~~~Dg~~~kd~r~~r~aa~NiIP~~tGaakavgkViPeL~gkltg~avRVPv~~  243 (346)
T 3h9e_O          164 LAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPD  243 (346)
T ss_dssp             HHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTSGGGGSBTTTCCEEECCHHHHHHHHHSGGGTTTEEEEEEEESCSS
T ss_pred             HHHHHHHHhCeeEEEEeeeeeccCccccccCCCCCCccccccceeeeecccCchHHhhheechhhcCcEEEEEEEccccc
Confidence            99999999999999999999999999999999878999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       245 g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||+.+++++++++++.||++++++++++++|||||+|+|+|+||+||+||||
T Consensus       244 ~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~  295 (346)
T 3h9e_O          244 VSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTH  295 (346)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             ceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCCeEeeccCCCCC
Confidence            9999999999999999999999999999999999999999999999999997

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=100.00  E-value=4.3e-78  Score=547.74  Aligned_cols=286  Identities=47%  Similarity=0.743  Sum_probs=274.9

Q ss_pred             CCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         4 ~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      .|++||||||||||||.++|++.+++++|+|+|||. .++++++|+|+|||+||+|+ ++++.+++ .|.+||+.|++++
T Consensus         2 ~m~~kv~INGfGrIGr~v~R~~~~~~~~~ivaind~-~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~inGk~I~v~~   78 (338)
T 3lvf_P            2 SMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDL-TDDDMLAHLLKYDTMQGRFT-GEVEVVDG-GFRVNGKEVKSFS   78 (338)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECS-SCHHHHHHHHHCCTTTCCCS-SCEEEETT-EEEETTEEEEEEC
T ss_pred             CccEEEEEECCCcHHHHHHHHHHHCCCceEEEEecC-CCHHHHHHHhccCCCCCCcC-CeEEEcCC-EEEECCEEEEEEE
Confidence            467999999999999999999999999999999995 89999999999999999999 99988776 6999999999999


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCCCCCeEEcCCcchhhh
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL  162 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal  162 (296)
                      ++||++++|.+.++|+||+|||.++++++++.|+++|+|+|+||+|++ |+|++|||+|++.|++..+|||||||+|+||
T Consensus        79 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~IISNasCTTn~L  158 (338)
T 3lvf_P           79 EPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL  158 (338)
T ss_dssp             CSCGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCSCCSEEECCCHHHHHH
T ss_pred             ecccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHHcCccCCeEecCchhhhhh
Confidence            899999999989999999999999999999999999999999999987 5999999999999986689999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCc-cccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~-~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      +|+++||+++|||++++|||+|++|++|+++|+++++ +||++|++++|+||+.+|+++++.+++|||+++++++|+|||
T Consensus       159 ap~lkvL~d~fGI~~g~mTTvha~T~~q~~~D~~~~k~d~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVP  238 (338)
T 3lvf_P          159 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVP  238 (338)
T ss_dssp             HHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCCTTTTSCGGGCCEEEECSTTTTGGGTCGGGTTSEEEEEEEES
T ss_pred             HHHHHHHHHhcCEEEEEEeeeccccchhhhhcCCccccccccchhhhceEEeCCCchHHHHhhhchhhcCcEEEEEEEcC
Confidence            9999999999999999999999999999999999866 999999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeec-CCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEK-EATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~-~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +++||+.++++++++ +++.||++++++++++++    |+|+|+|+||+||+||||
T Consensus       239 v~~~s~~dlt~~lek~~~t~eei~~~lk~As~g~----l~yte~~~VS~Df~~~~~  290 (338)
T 3lvf_P          239 VATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTY  290 (338)
T ss_dssp             CSSCEEEEEEEEESSSSCCHHHHHHHHHHTCCSS----EEEECSCCCGGGGTTCCC
T ss_pred             CCceEEEEEEEEEccCCCCHHHHHHHHHHhhcCC----cccccCCEEeEeeCCCCc
Confidence            999999999999999 999999999999999877    999999999999999997

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=100.00  E-value=1.5e-77  Score=546.79  Aligned_cols=287  Identities=49%  Similarity=0.833  Sum_probs=274.8

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++||||||||+|||.++|+|.++ ++++|+||+. .+.++++|+|+|||+||+|+ ++++.+++ .|.+||+.|++++.
T Consensus        20 ~~~kVaInGfGrIGr~vlr~l~e~-~~~ivaIndl-~d~~~~a~llkydS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~~   95 (356)
T 3hja_A           20 GSMKLAINGFGRIGRNVFKIAFER-GIDIVAINDL-TDPKTLAHLLKYDSTFGVYN-KKVESRDG-AIVVDGREIKIIAE   95 (356)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHT-TCEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECC
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHC-CCCEEEEeCC-CCHHHhhhhhccccCCCCCC-CCEEEcCC-EEEECCEEEEEEEc
Confidence            458999999999999999999998 8999999998 78999999999999999999 88877665 69999999999998


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccC----HHHHHHHHH-CCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcc
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTD----KDKAAAHLK-GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCT  158 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~----~~~~~~~l~-~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~  158 (296)
                      +||++++|.+.++|+||||||.|.+    ++.++.|++ +|+||||||+|+.| +|++|||+|++.|++..+|||||||+
T Consensus        96 ~dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d~vp~vV~gVN~~~~~~~~~IISNaSCT  175 (356)
T 3hja_A           96 RDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCT  175 (356)
T ss_dssp             SSGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSSCCEECCTTTSGGGCCTTCCEEECCCHH
T ss_pred             CChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCCCCCEEeccCCHHHcCcCccEEECCccc
Confidence            8999999988999999999999999    999999999 99999999999876 79999999999998667899999999


Q ss_pred             hhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEE
Q 022491          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSF  238 (296)
Q Consensus       159 ~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~  238 (296)
                      |+|++|+++||+++|||++++|||+|++|++|+++|.++ ++||++|++++|+||+.+|+++++.+++||++++++++|+
T Consensus       176 Tn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~-kd~r~~r~aa~NIIP~~tGaakav~kVlPeL~gkltg~av  254 (356)
T 3hja_A          176 TNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSM  254 (356)
T ss_dssp             HHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBTTTSCEEEECCTTTTHHHHCGGGTTTEEEEEE
T ss_pred             hhhhhHhHHHHHHhcCeEEEEEEEEEecccccccccCcc-cccccccccccEEEcCCCchHHHHHHhccccCCcEEEEEE
Confidence            999999999999999999999999999999999999988 7999999999999999999999999999999999999999


Q ss_pred             EeeeCceEEEEEEEEe-ecCCCHHHHHHHHHHhhcCc-CCCcccccCCceeeecCCCCCC
Q 022491          239 RVPTVDVSVVDLTVRL-EKEATYEEIKNAIKEESEGK-LKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       239 ~VP~~~g~~~~~~~~l-~~~~~~~ev~~~~~~~~~~~-~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |||+++||+.++++++ +++++.|||+++|+++++++ |||||+|+|+|+||+||+||||
T Consensus       255 RVPv~~~s~~dlt~~l~ek~~t~eeI~~~lk~Aa~g~~lkgil~yte~~~VS~Df~~~~~  314 (356)
T 3hja_A          255 RVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSH  314 (356)
T ss_dssp             EESCSSCEEEEEEEEESCTTCCHHHHHHHHHHHHHSTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             EcCCCccEeEEEEEEEccCCCCHHHHHHHHHHHhcCchhccccceecCCeEeeeccCCCC
Confidence            9999999999999999 99999999999999999998 9999999999999999999997

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=100.00  E-value=7.7e-77  Score=543.46  Aligned_cols=289  Identities=64%  Similarity=1.016  Sum_probs=276.4

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||||||+|||.++|++.+||++|+|+||++..++++++|+|+|||+|++|+ +.++++++ .|.++|+.|.++++.
T Consensus        11 ~~kv~INGfGrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~-~~v~~~~~-~l~v~Gk~i~v~~~~   88 (345)
T 2b4r_O           11 ATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHADG-FLLIGEKKVSVFAEK   88 (345)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEESSCEEEEECCS
T ss_pred             heEEEEeCCchHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCC-CCEEEcCC-EEEECCEEEEEEEcC
Confidence            4899999999999999999999999999999996578999999999999999999 88888755 699999999999888


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhHh
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~  164 (296)
                      ||++++|.+.++|+||+|||.+.+++.++.|+++|+|++|||+++++ +|++|||+|++.|++..+|||||||+|+||+|
T Consensus        89 dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~~dvplvV~gVN~~~~~~~~~IISNasCTTn~Lap  168 (345)
T 2b4r_O           89 DPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAP  168 (345)
T ss_dssp             SGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTCCEEECCCHHHHHHHH
T ss_pred             CcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHhCCCCCEEECCchHHHHHHH
Confidence            89999998789999999999999999999999999999999999885 79999999999998556899999999999999


Q ss_pred             HHHHHHhhcCeeEEEEEEEeecCCcccccCCCC--CccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (296)
Q Consensus       165 ~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~--~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~  242 (296)
                      +++||+++|||+++.|||+|++|++|+++|+++  +++||++|++++|+||+.+|+++++.+++|+++++++++|+||||
T Consensus       169 ~lk~L~d~fGI~~~~mTTvhA~T~~q~~~d~~~~~~~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avRVPv  248 (345)
T 2b4r_O          169 LAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPI  248 (345)
T ss_dssp             HHHHHHHHHCEEEEEEEEEECCCTTSCSSSCCCGGGCCGGGGSCTTTCCEEEECCHHHHHHHHSGGGTTTEEEEEEECSC
T ss_pred             HHHHHHHhcCeeEEEEEEeehhhchhhhhcccccccCCCccccchhhccCcCCCchHHHHHHhhhhcCCcEEEEEEEecc
Confidence            999999999999999999999999999999987  478999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       243 ~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++||+.+++++++++++.|||+++|+++++++|||||+|+|+|+||+||+||||
T Consensus       249 ~~gs~~dltv~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~VS~d~~~~~~  302 (345)
T 2b4r_O          249 GTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNR  302 (345)
T ss_dssp             SSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             cceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCcccccCCCceEEeeCCCCc
Confidence            999999999999999999999999999999999999999999999999999997

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=100.00  E-value=1.4e-76  Score=540.92  Aligned_cols=286  Identities=45%  Similarity=0.749  Sum_probs=274.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC---CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~---p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||||||||+|||.++|++.++   |++|+++||+. .++++++|+|+|||+|++|+ +.++++++ .|.++|+.|.+++
T Consensus         2 ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~-~~~~~~a~ll~ydS~hg~f~-~~v~~~~~-~l~v~g~~i~v~~   78 (335)
T 1obf_O            2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL-GDPKTNAHLTRYDTAHGKFP-GTVSVNGS-YMVVNGDKIRVDA   78 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCC-CCHHHHHHHhccCCcCCCCC-CCEEEeCC-EEEECCEEEEEEE
Confidence            7999999999999999999998   89999999997 78999999999999999999 88888755 6999999999998


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCC-eEEcccChhccCCCCCeEEcCCcchhh
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAP-MFVVGVNEKEYKPELDIVSNASCTTNC  161 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~-~~v~gvn~~~l~~~~~iIs~p~C~~ta  161 (296)
                      ..||++++|.+.++|+||+|||.+.+++.++.|+++|+|++|||++++ |+| ++|||+|++.|++..+|||||||+|+|
T Consensus        79 ~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~~dvp~~vV~gVN~~~~~~~~~IISNasCTTn~  158 (335)
T 1obf_O           79 NRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNC  158 (335)
T ss_dssp             CSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCCHHHHH
T ss_pred             cCCcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcccCCCCceEEccCCHHHhCcCccEEeCCcHHHHH
Confidence            889999999888999999999999999999999999999999999987 688 999999999998557899999999999


Q ss_pred             hHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEee
Q 022491          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (296)
Q Consensus       162 l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP  241 (296)
                      |+|+++||+++|||+++.|||+|++|++|+.+|+++ +++|++|++++|+||+.+|+++++.+++|+++++++++|+|||
T Consensus       159 Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~~~-~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avRVP  237 (335)
T 1obf_O          159 LAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVP  237 (335)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCC-SSTTTTSCTTTCCEEEECCHHHHHHHHCGGGTTSEEEEEEEES
T ss_pred             HHHHHHHHHHhcCeeEEEEEEEchhhhhhhhhcccc-cccccccchhhccccCCCcchHhHhhhccccCCceEEEEEEee
Confidence            999999999999999999999999999999999986 6899999999999999999999999999999999999999999


Q ss_pred             eCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       242 ~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +++||+.+++++++++++.||++++|+++++++|||||+|+|+|+||+||+||||
T Consensus       238 v~~~s~~dl~v~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~  292 (335)
T 1obf_O          238 TINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPA  292 (335)
T ss_dssp             CSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             ccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCeecccCCceEeeeeCCCCc
Confidence            9999999999999999999999999999999999999999999999999999997

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=100.00  E-value=1.4e-76  Score=541.69  Aligned_cols=288  Identities=48%  Similarity=0.852  Sum_probs=274.5

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++||||||||+|||.++|++.++|++|+++||+. .++++++|+|+|||+||+|+ +.++.+++ .|.++|+.|.++++
T Consensus         1 m~ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~-~~~~~~a~ll~yDs~hG~~~-~~v~~~~~-~l~v~Gk~i~v~~~   77 (342)
T 2ep7_A            1 MAIKVGINGFGRIGRSFFRASWGREEIEIVAINDL-TDAKHLAHLLKYDSVHGIFK-GSVEAKDD-SIVVDGKEIKVFAQ   77 (342)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEECSS-EEEETTEEEEEECC
T ss_pred             CceEEEEECCCHHHHHHHHHHHhCCCceEEEEecC-CChHHHhhhhhcccccccCC-CcEEEcCC-EEEECCEEEEEEEc
Confidence            45899999999999999999999999999999995 78999999999999999999 88887655 69999999999988


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCC-eEEcccChhccCC-CCCeEEcCCcchhhh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP-MFVVGVNEKEYKP-ELDIVSNASCTTNCL  162 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~-~~v~gvn~~~l~~-~~~iIs~p~C~~tal  162 (296)
                      .+|++++|.+.++|+||+|||.+++++.++.|+++|+|+||||++++|.| ++|||+|++.|++ ..+|||||||+|+||
T Consensus        78 ~dp~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~dvp~~vV~gVN~~~~~~~~~~IISNasCTTn~L  157 (342)
T 2ep7_A           78 KDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCL  157 (342)
T ss_dssp             SSGGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHH
T ss_pred             CChhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCCCCCceEEcCcCHHHhcccCCeEEECCChHHHHH
Confidence            89999999878999999999999999999999999999999999998899 9999999999985 568999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~  242 (296)
                      +|+++||+++|||+++.|||+|++|++|+++|+++ +++|++|++++|+||+.+|+++++.+++|+++++++++|+|||+
T Consensus       158 ap~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~p~-~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avRVPv  236 (342)
T 2ep7_A          158 APCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPV  236 (342)
T ss_dssp             HHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGGGCCEEECCCTTGGGGGTSGGGTTTEEEEEEEESC
T ss_pred             HHHHHHHHHHcCeeEEEEEEEeecccchhhhcCCc-chhhhhhhHhhCccCCCCChHHHHHHhhhccCCCEEEEEEEecc
Confidence            99999999999999999999999999999999886 69999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEeec-CCCHHHHHHHHHHhhcC-------cCCCcccccCCceeeecCCCCCC
Q 022491          243 VDVSVVDLTVRLEK-EATYEEIKNAIKEESEG-------KLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       243 ~~g~~~~~~~~l~~-~~~~~ev~~~~~~~~~~-------~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++||+.++++++++ +++.|||+++|++++++       +|||||+|+|+|+||+||+||||
T Consensus       237 ~~~s~~dltv~lek~~~t~eei~~~lk~a~~~~~~~~~~~lkgil~y~~~~~vS~d~~~~~~  298 (342)
T 2ep7_A          237 PDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPH  298 (342)
T ss_dssp             SSCEEEEEEEEESSCCSCHHHHHHHHHHHHHHHHTSCCGGGTTSEEEECSCCCGGGGTTCCC
T ss_pred             cceEEEEEEEEEcCCCCCHHHHHHHHHHHhcCCcccccccccccccccCCCeEeeeECCCCc
Confidence            99999999999999 99999999999999998       99999999999999999999997

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=100.00  E-value=1.7e-75  Score=537.36  Aligned_cols=287  Identities=54%  Similarity=0.867  Sum_probs=273.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |+|||||||||||++++|+|.+||++|+++|++. .+.++++|+++||++||+|. +.++..++ .|.++|+.+.++++.
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~~~veivain~~-~~~~~~~~ll~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~~~   77 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL-TDANTLAHLLKYDSVHGRLD-AEVSVNGN-NLVVNGKEIIVKAER   77 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC-CCHHHHHHHhccCCcCCCcC-ceEEEccC-cEEECCEEEEEEecC
Confidence            3899999999999999999999999999999997 78899999999999999998 88777655 588999999998777


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCC-CCCeEEcCCcchhhhH
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLA  163 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~-~~~iIs~p~C~~tal~  163 (296)
                      ||++++|.+.++|+||+|||++.+++.++.|+++|+||+|||+|++| .|++|||+|+++|++ .+++||||||||||++
T Consensus        78 dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~d~~p~~V~eVN~~~i~~~~~~IIsNpsCttn~la  157 (334)
T 3cmc_O           78 DPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLA  157 (334)
T ss_dssp             SGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHHH
T ss_pred             ChhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCccCCCEeccccCHHHhCccCCeEEECCChHHHHHH
Confidence            89999998779999999999999999999999999999999999987 799999999999984 3789999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeC
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~  243 (296)
                      |+|+||+++|||+++.|+|+|++||+|+.+|.++ +++|++|.+++|++|+.+|+++|+.+++|+++++++++|+|||++
T Consensus       158 p~lkpL~~~~gI~~~~mtTvha~Sg~q~~~d~~~-~~~r~~r~~a~NiiP~~tg~a~ei~kvlp~l~gkl~~~a~rVP~~  236 (334)
T 3cmc_O          158 PFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTP  236 (334)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHhcCceeeeEEEEEeccchhhhccccc-cccccchhhhhCEEeeccCcccchhhhChhhcCcEEEEEEEECCC
Confidence            9999999999999999999999999999999987 699999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       244 ~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |||++++|++++++++.|||+++|+++|+++|||||+|+|+|+||+||+||||
T Consensus       237 ~gs~~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~  289 (334)
T 3cmc_O          237 NVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTV  289 (334)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCS
T ss_pred             CEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCCcccCCCCCEeeeeeCCCCc
Confidence            99999999999999999999999999999999999999999999999999997

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=100.00  E-value=1.3e-75  Score=537.75  Aligned_cols=287  Identities=65%  Similarity=1.033  Sum_probs=273.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |+|||||||||||++++|+|.+||++||++|++. .+.++++|+++||++||+|+ +.++..++ .|.++|+.|.+++..
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~-~~~~~~a~l~~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v~~~~   77 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER   77 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC-CChhHHhHhhcccccCCCCC-CeEEEcCC-EEEECCEEEEEEEcC
Confidence            3899999999999999999999999999999996 78899999999999999999 88776554 599999999999888


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCCCCCeEEcCCcchhhhHh
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~  164 (296)
                      ||++++|.+.++|+||+|||++.+++.+++|+++|+|++++|++++ +.|++|||+|+++|+ ++++||||||||||++|
T Consensus        78 dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~~~~~p~~V~GvN~~~~~-~~~iIsNpsCtt~~lap  156 (330)
T 1gad_O           78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAP  156 (330)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCC-SCSEEECCCHHHHHHHH
T ss_pred             ChhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCCCCCCCeEeecCCHHHhC-CCCEEEcCChHHHHHHH
Confidence            8999999777999999999999999999999999999999999885 479999999999998 78999999999999999


Q ss_pred             HHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCc
Q 022491          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (296)
Q Consensus       165 ~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~  244 (296)
                      +|+||+++|||+++.|||+|++||+|+++|++++++++++|.+++|++|+.+|+++|+.+++||++++++++|+|||++|
T Consensus       157 ~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~  236 (330)
T 1gad_O          157 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN  236 (330)
T ss_dssp             HHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCSSCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEEEEECSCSS
T ss_pred             HHHHHHHhcCeeEEEEEEEEecccccccccccccCCCccccchhhCeEEcCCCcchhHHHHHHHhcCcEEEEEEEecccc
Confidence            99999999999999999999999999999998867999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       245 g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||++++|++++++++.|||+++|+++|+++|||||+|+|+|+||+||+||||
T Consensus       237 g~~~~l~~~l~k~~t~eei~~~~k~a~~~~l~gil~y~~~~~vs~d~~~~~~  288 (330)
T 1gad_O          237 VSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVC  288 (330)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCS
T ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHhcCCCCCEEeeECCceeeeeECCCCc
Confidence            9999999999999999999999999999999999999999999999999997

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=100.00  E-value=2.3e-75  Score=541.69  Aligned_cols=288  Identities=44%  Similarity=0.779  Sum_probs=274.3

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      ||+|||||||||||++++|+|.+|  |++|+++|++. .++++++|+++||++||+|. +.+.++++ .|.++|+.+.++
T Consensus         1 M~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~-~d~~~~a~ll~yds~~G~~~-~~v~~~~~-~l~v~g~~i~v~   77 (380)
T 2d2i_A            1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT-SDARTAAHLLEYDSVLGRFN-ADISYDEN-SITVNGKTMKIV   77 (380)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECS-SCHHHHHHHHHCCTTTCCCC-SCEEEETT-EEEETTEEEEEE
T ss_pred             CCcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecC-CCHHHHHHhhcccccCCCCC-CcEEEeCC-eEEECCeEEEEE
Confidence            458999999999999999999999  99999999997 78899999999999999999 88877655 588999999999


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CC-eEEcccChhccCC-CCCeEEcCCcch
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-AP-MFVVGVNEKEYKP-ELDIVSNASCTT  159 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~-~~v~gvn~~~l~~-~~~iIs~p~C~~  159 (296)
                      ...||++++|.+.++|+||+|||++.+++.+++|+++|+|+||||+|+++ .| ++|||+|+++|++ .++|||||||||
T Consensus        78 ~~~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~d~~p~~~V~GVN~e~~~~~~~~IVSNasCtT  157 (380)
T 2d2i_A           78 CDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTT  157 (380)
T ss_dssp             CCSCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTTTCSEEECCCHHH
T ss_pred             ecCChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCCCCCCceEEcccCHHHhcccCCcEEECCchHH
Confidence            88899999997679999999999999999999999999999999999986 68 9999999999985 368999999999


Q ss_pred             hhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEE
Q 022491          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR  239 (296)
Q Consensus       160 tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~  239 (296)
                      ||++|+++||+++|||++++|||+|++|++|+++|+++ ++||+||++++|++|+.+|+.+++.+++|||+++++++++|
T Consensus       158 n~lap~lk~L~d~fgI~~g~mTTvha~Tg~q~~vD~~~-~d~r~gR~aa~NiIP~~Tgaakav~kvlPeL~gkl~g~avR  236 (380)
T 2d2i_A          158 NCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR  236 (380)
T ss_dssp             HHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCGGGCCEEEECCHHHHHHHHCGGGTTTEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCeeEEEEEEEeeccccchhhccch-hhhhhcchHhhCeEeccCchHHHHHhhhHhhhCcEEEEEEE
Confidence            99999999999999999999999999999999999998 59999999999999999999999999999999999999999


Q ss_pred             eeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       240 VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||+++||+++++++++++++.|||+++|+++++++|||||+|+|+|+||+||+||||
T Consensus       237 VPt~~gs~~dlt~~l~k~~t~eeI~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~  293 (380)
T 2d2i_A          237 VPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDE  293 (380)
T ss_dssp             ESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             eccCCEEEEEEEEEECCcCCHHHHHHHHHHHhhCCCCCccCCcCCCeeeeeeCCCCc
Confidence            999999999999999999999999999999999999999999999999999999997

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=100.00  E-value=1.4e-75  Score=540.16  Aligned_cols=290  Identities=64%  Similarity=1.052  Sum_probs=271.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +|+|||||||||||++++|+|.+||++||++|+++..++++++++|+||++||+|+ +.++++++ .|.++|+.+.+++.
T Consensus        16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~   93 (354)
T 3cps_A           16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFN-GTVEVSGK-DLCINGKVVKVFQA   93 (354)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCS-SCEEECC--CEEETTEEEEEECC
T ss_pred             cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCC-CcEEEeCC-EEEECCeEEEEEec
Confidence            35899999999999999999999999999999995478899999999999999999 88776555 59999999999988


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCC-CCeEEcCCcchhhh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPE-LDIVSNASCTTNCL  162 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~-~~iIs~p~C~~tal  162 (296)
                      .||++++|.+.++|+||+|||++.+++.+++|+++|+|++|||+|+++ .|++|||+|+++|++. +++||||||||||+
T Consensus        94 ~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~padd~~p~~V~GVN~~~~~~~~~~IISNpsCtTn~l  173 (354)
T 3cps_A           94 KDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCL  173 (354)
T ss_dssp             SCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSCCCBCCTTTTGGGCCTTTCSEEECCCHHHHHH
T ss_pred             CChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCCCCCCEEEeccCHHHhCcCCCcEEECCCcHHHHH
Confidence            889999997679999999999999999999999999999999999986 7999999999999843 79999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCC--ccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEe
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~--~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~V  240 (296)
                      +|+|+||+++|||+++.|||+|++||+|+++|+++.  +++|++|.+++|++|+.+|+++|+.+++|+++++++++|+||
T Consensus       174 ap~lkpL~~~~gI~~g~mtTvha~Tg~q~~vd~~~~~~k~~r~~r~aa~NiiP~~tG~akei~kvlp~l~gkl~~~a~rV  253 (354)
T 3cps_A          174 APLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRV  253 (354)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCCCC--CCGGGSCTTSCCEEEECCHHHHHHHHSGGGTTTEEEEEEEE
T ss_pred             HHHHHHHHHhCCeeEEEEEEEecccccchhhhccchhccccccccchhccEEecCcCHHHHHHHHHHhcCCcEEEEEEEe
Confidence            999999999999999999999999999999998862  588889999999999999999999999999999999999999


Q ss_pred             eeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       241 P~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |++|||++++|++++++++.|||+++|+++|+++|||||+|+|+|+||+||+||||
T Consensus       254 P~~~gs~~dl~~~l~k~~t~eeI~~~~k~a~~~~lkgil~y~~~~~vs~d~~~~~~  309 (354)
T 3cps_A          254 PTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKY  309 (354)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             ccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCCCCccCccCCCeeeEEEcCCCc
Confidence            99999999999999999999999999999999999999999999999999999997

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=2.5e-75  Score=535.97  Aligned_cols=286  Identities=50%  Similarity=0.859  Sum_probs=272.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +|||||||||||++++|+|.+|  |++||++|++. .++++++|+++||++||+|. +.+...++ .|.++|+.+.++++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~-~~~~~~~~ll~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v~~~   77 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL-TDTKTLAHLLKYDSVHKKFP-GKVEYTEN-SLIVDGKEIKVFAE   77 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS-SCHHHHHHHHHCCTTTCCCS-SCEEECSS-EEEETTEEEEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcC-CChHHhhhhccCcCcCCCcC-CcEEEcCC-EEEECCeEEEEEec
Confidence            5899999999999999999999  99999999996 78899999999999999999 88877654 58899999999877


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCC-eEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP-MFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~-~~v~gvn~~~l~~~~~iIs~p~C~~tal~  163 (296)
                      .||++++|.+.++|+||+|||++.+++.+++|+++|+||+|||+|+++.| ++|||+|+++|++++++||||||||||++
T Consensus        78 ~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~d~p~~~V~eVN~~~i~~~~~iIsNpsCttn~la  157 (332)
T 1hdg_O           78 PDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIA  157 (332)
T ss_dssp             SSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTCCEEECCCHHHHHHH
T ss_pred             CChHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCCCCCceEEeccCHHHhCCCCcEEECCccHHHHHH
Confidence            78999999767999999999999999999999999999999999999888 99999999999855789999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeC
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~  243 (296)
                      |+|+||+++|||+++.|+|+|++||+|+.+|.++ +++|++|.+++|++|+.+|+++|+.+++|+++++++++|+|||++
T Consensus       158 p~lkpL~~~~gI~~~~~ttvha~Sg~q~~~d~~~-~~~~~~r~~a~NiiP~~tg~a~ei~kvLp~l~gkl~~~a~rVP~~  236 (332)
T 1hdg_O          158 PIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTP  236 (332)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGGGCCEEECCTHHHHHHHHCGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHhcCeeEeEEEEEEeccchhhhhcCcc-cccccchhHhhCcccccCCcccchhhhCccccCCEEEEeEEcccc
Confidence            9999999999999999999999999999999887 589999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       244 ~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      |||++++|++++++++.|||+++|+++|+++|||||+|+|+|+||+||+||||
T Consensus       237 ~g~l~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~  289 (332)
T 1hdg_O          237 DGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTF  289 (332)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             CcEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCcccccCCCeeeeeeCCCCc
Confidence            99999999999999999999999999999999999999999999999999997

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=100.00  E-value=1.2e-74  Score=533.03  Aligned_cols=292  Identities=86%  Similarity=1.321  Sum_probs=271.8

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++|||||||||||++++|+|.+||++|+++|+|+..+.++++++++|+++||+|+.+.++...+..+.++|+.+.++..
T Consensus         2 m~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~   81 (337)
T 3e5r_O            2 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECC
T ss_pred             CceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEec
Confidence            45899999999999999999999999999999995467888999999999999986223333123358899999998887


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~  164 (296)
                      .||++++|.+.++|+||+|||++.+++.+++|+++|+|++|||+|++|.|++|||+|+++|++++++||||||||||++|
T Consensus        82 ~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~d~p~~V~gvN~~~~~~~~~iIsnpsCtt~~la~  161 (337)
T 3e5r_O           82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAP  161 (337)
T ss_dssp             SCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHHH
T ss_pred             CChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCCCCCEEEeccCHHHhCCCCcEEECCChHHHHHHH
Confidence            78999999777999999999999999999999999999999999998889999999999998558999999999999999


Q ss_pred             HHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCc
Q 022491          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (296)
Q Consensus       165 ~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~  244 (296)
                      +|+||+++|||+++.+||+|++||+|+++|+++.++++++|.+++|++|+.+|+++|+.+++||++++++++++|||++|
T Consensus       162 ~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~  241 (337)
T 3e5r_O          162 LAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVD  241 (337)
T ss_dssp             HHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCSGGGSBGGGSCEEEECCHHHHHHHHSGGGTTTEEEEEEEESCSS
T ss_pred             HHHHHHHhcCccccceeEEEeeccccccccccccccccccccHhhCccccCCCchHHHHHHHHHhCCcEEEEEEEeccCC
Confidence            99999999999999999999999999999998756899999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       245 g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||++++|++++++++.|||+++|+++|+++||||++|+|+|+||+||+||||
T Consensus       242 g~~~~l~~~l~k~~t~eei~~~~~~a~~~~l~gil~y~~~~~vs~d~~~~~~  293 (337)
T 3e5r_O          242 VSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSR  293 (337)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             eEEEEEEEEECCCccHHHHHHHHHHHhhCCCCCcccCCCCCeeeeeecCCCC
Confidence            9999999999999999999999999999999999999999999999999997

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=100.00  E-value=2.4e-74  Score=530.84  Aligned_cols=288  Identities=44%  Similarity=0.780  Sum_probs=274.3

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      ||+|||||||||||++++|+|.+|  |++|+++|++. .++++++|+++||++||+|. +.+..+++ .|.++|+.+.++
T Consensus         1 M~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~-~~~~~~~~l~~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~   77 (339)
T 3b1j_A            1 MTIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT-SDARTAAHLLEYDSVLGRFN-ADISYDEN-SITVNGKTMKIV   77 (339)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECS-SCHHHHHHHHHCCTTTCCCC-SCEEEETT-EEEETTEEEEEE
T ss_pred             CceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecC-CCHHHHHHHhccccccCCCC-CcEEEcCC-eeeecCceEEEE
Confidence            458999999999999999999999  99999999997 78999999999999999999 88877555 599999999999


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CC-eEEcccChhccCC-CCCeEEcCCcch
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-AP-MFVVGVNEKEYKP-ELDIVSNASCTT  159 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~-~~v~gvn~~~l~~-~~~iIs~p~C~~  159 (296)
                      ...||++++|.+.++|+||+|||++.+++.+++|+++|+|+||||+|+++ .| ++|||+|+++|++ .+++||||||||
T Consensus        78 ~~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~~~p~~~V~gVN~~~~~~~~~~IISnasCtT  157 (339)
T 3b1j_A           78 CDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTT  157 (339)
T ss_dssp             CCSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTTTCSEEECCCHHH
T ss_pred             ecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCCCCCeeEEcccCHHHhCcCCCeEEECCcchh
Confidence            88899999997779999999999999999999999999999999999986 68 9999999999985 378999999999


Q ss_pred             hhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEE
Q 022491          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR  239 (296)
Q Consensus       160 tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~  239 (296)
                      ||++|+++||+++|||+++.++|+|++|++|+++|.++ +++|+||++++|++|+.+++.+++.+++|||+++++++|+|
T Consensus       158 n~lap~lk~L~~~fgI~~~~~tTvha~Tg~q~~vd~~~-~d~r~~r~a~~NiiP~~tgaakav~kVlpeL~gkl~g~a~r  236 (339)
T 3b1j_A          158 NCLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR  236 (339)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCTTSCCEEEECSHHHHHHHHCGGGTTTEEEEEEE
T ss_pred             hHHHHHHHHHHHhCCeeEEEEEEEEeecCCchhcccch-hhhhccccHHHceEcccCchHHHHHHHhHhhcCcEEEEEEE
Confidence            99999999999999999999999999999999999998 59999999999999999999999999999999999999999


Q ss_pred             eeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       240 VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||+++||++++|++++++++.|||+++|+++++++||||++|+|+|+||+||+|+||
T Consensus       237 VP~~~g~~~dl~v~l~k~~t~eeI~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~  293 (339)
T 3b1j_A          237 VPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDE  293 (339)
T ss_dssp             ESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHSTTBTTEEEECSCCCGGGGTTCCS
T ss_pred             eccCCEEEEEEEEEEcCcCCHHHHHHHHHHhhcCCCCCccCccCCceeehhcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999997

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=100.00  E-value=2.4e-74  Score=529.19  Aligned_cols=288  Identities=47%  Similarity=0.773  Sum_probs=272.0

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |+|||||||||||++++|+|.+|  |++||++|||. .++++++|+|+||++||+|. +.+.+..+..|.++|+.+.++.
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~-~~~~~~a~ll~sds~~G~~~-~~v~~~~~~~l~v~g~~i~v~~   78 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT-GGVKQASHLLKYDSILGTFD-ADVKTAGDSAISVDGKVIKVVS   78 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECT-TCHHHHHHHHHCCTTTCSCS-SCEEECTTSEEEETTEEEEEEC
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcC-CCHHHHHHHhcccccCCCcc-ceeEEecCCeEEECCeEEEEEe
Confidence            38999999999999999999999  99999999996 78999999999999999998 7776323335889999999998


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhh
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCL  162 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal  162 (296)
                      ..||++++|.+.++|+||+|||++.+++.++.|+++|+|++++|+++++ .|++|||+|+++|++++++||||||||||+
T Consensus        79 ~~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r~d~p~~V~GVN~~~~~~~~~IIsNasCtTn~l  158 (337)
T 1rm4_O           79 DRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCL  158 (337)
T ss_dssp             CSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCCBCCTTTTGGGCCTTCSEEECCCHHHHHH
T ss_pred             cCChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcccCCCCeEeecCCHHHhCCCCeEEECCChHHHHH
Confidence            8899999997669999999999999999999999999999999998875 799999999999985589999999999999


Q ss_pred             HhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeee
Q 022491          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (296)
Q Consensus       163 ~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~  242 (296)
                      +|+++||+++|||+++.|||+|++||+|+++|.++ ++||++|.+++|++|+.+++.+.+.+++|||+++++++|+|||+
T Consensus       159 ap~lk~L~~~fgI~~~~mtTvha~Tgaq~l~d~~~-~~~r~~r~~a~NiiP~~tgaakav~kvlPel~gkl~~~a~RVP~  237 (337)
T 1rm4_O          159 APFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT  237 (337)
T ss_dssp             HHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCTTTCCEEECCCHHHHHHHHCGGGTTTEEEEEEEESC
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEecCCccchhhcch-hhhccchhhhcCcccccchhhHHHHhhhhhhcCcEEEEEEEecC
Confidence            99999999999999999999999999999999987 69999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       243 ~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++||+++++++++++++.|||+++|+++|+++|||||+|+|+|+||+||+||||
T Consensus       238 ~~gs~~dl~~~l~k~~t~eei~~~lk~a~~~~lkgil~y~~~~~vs~d~~~~~~  291 (337)
T 1rm4_O          238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDV  291 (337)
T ss_dssp             SSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCS
T ss_pred             CCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCcCceecCcCCCeeecccCCCCc
Confidence            999999999999999999999999999999999999999999999999999997

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=100.00  E-value=2.8e-74  Score=527.93  Aligned_cols=285  Identities=50%  Similarity=0.803  Sum_probs=271.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +|||||||||||++++|+|.+| ++++++||+. .++++++|+|+||++||+|. +.+...++ .|.++|+.+.++...|
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~-~~evvaind~-~~~~~~a~ll~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~~~d   76 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSR-GVEVALINDL-TDNKTLAHLLKYDSIYHRFP-GEVAYDDQ-YLYVDGKAIRATAVKD   76 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCEEEEEecC-CCHHHHhHhhhccccCCCCC-ceEEEcCC-EEEECCEEEEEEecCC
Confidence            5899999999999999999999 9999999996 78999999999999999999 88876554 5889999999987778


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCC-CCCeEEcCCcchhhhHh
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAP  164 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~-~~~iIs~p~C~~tal~~  164 (296)
                      |++++|.+.++|+||+|||++.+++.++.|+++|+|++|||+|++| .|++|||+|+++|++ .+++||||||||||++|
T Consensus        77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d~~p~vV~gVN~~~~~~~~~~IIsnasCtTn~lap  156 (331)
T 2g82_O           77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAP  156 (331)
T ss_dssp             GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCCEEECCCHHHHHHHH
T ss_pred             hhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcCCCCEEeeccCHHHhCcCCCCEEECCChHHHHHHH
Confidence            9999998789999999999999999999999999999999999986 799999999999984 37899999999999999


Q ss_pred             HHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCc
Q 022491          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (296)
Q Consensus       165 ~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~  244 (296)
                      +++||+++|||+++.|||+|++||+|+.+|.++ ++||++|.+++|++|+.+|+.+++.+++|+|+++++++|+|||+++
T Consensus       157 ~lk~L~~~fgI~~~~mtTvha~Tg~q~~~d~~~-~d~r~~r~~a~NiIP~~tGaakav~kIlp~L~gkl~g~a~RVPv~~  235 (331)
T 2g82_O          157 VMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT  235 (331)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGGGCCEEECCCHHHHHTTTCGGGTTSEEEEEEEESCSS
T ss_pred             HHHHHHHhcCccEEEEEEEeecccccchhcccc-ccccccchhhhCccccCCCchhhhhhhHHhcCCCEEEEEEEeCCCC
Confidence            999999999999999999999999999999887 6999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       245 g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||+++++++++++++.|||+++|+++++++||||++|+|+|+||+||+||||
T Consensus       236 gs~~dl~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~  287 (331)
T 2g82_O          236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPH  287 (331)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHhhcCccCCccCCCCCCeeeeeeCCCCc
Confidence            9999999999999999999999999999999999999999999999999997

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=100.00  E-value=3e-74  Score=530.99  Aligned_cols=290  Identities=67%  Similarity=1.086  Sum_probs=273.4

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||+||||||+||||++++|+|.+||++|+++|+++..+.++++++++||++|++|+ +.++..++ .+.++|+.++++..
T Consensus         2 M~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~-~~~~~~~~-~l~v~g~~i~v~~~   79 (335)
T 1u8f_O            2 GKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH-GTVKAENG-KLVINGNPITIFQE   79 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECC
T ss_pred             CceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCC-CceEEcCC-eEEECCeEEEEEec
Confidence            45899999999999999999999999999999995467899999999999999999 77776554 59999999999987


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~  164 (296)
                      .||++++|.+.++|+||+|||++.+++.+++|+++|+|+|++++++.+.|++|||+|+++|++++++||||||||||++|
T Consensus        80 ~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~~~~p~~V~gvN~~~~~~~~~iIsnpsCtt~~l~~  159 (335)
T 1u8f_O           80 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAP  159 (335)
T ss_dssp             SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCTTCSEEECCCHHHHHHHH
T ss_pred             CCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCCCCCCeEEeccCHHHhCCCCCEEECCChHHHHHHH
Confidence            88999999878999999999999999999999999999999999877789999999999998557999999999999999


Q ss_pred             HHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEEeeeCc
Q 022491          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (296)
Q Consensus       165 ~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~VP~~~  244 (296)
                      +|+||+++|||+++.++|+|++||+|+.+|++++++++++|.+++|++|+.+|+++|+.+++||++++++++|+|||++|
T Consensus       160 ~lkpL~~~~gI~~~~~tt~~a~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~  239 (335)
T 1u8f_O          160 LAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTAN  239 (335)
T ss_dssp             HHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEEEEEESCSS
T ss_pred             HHHHHHHhCCcceeEEEEEeccccCccccccccccccccchhhhcCceeccCChhHHHHHHHHHhCCcEEEEEEEeccCC
Confidence            99999999999999999999999999999988756899999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       245 g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||++++|++++++++.|||+++|+++|+++||||++|+|+|+||+||+||||
T Consensus       240 g~~~~l~~~l~~~~t~eei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~  291 (335)
T 1u8f_O          240 VSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTH  291 (335)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHhhCccCcEEcccCCCcceeeecCCCC
Confidence            9999999999999999999999999999999999999999999999999986

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=100.00  E-value=1.7e-73  Score=525.45  Aligned_cols=288  Identities=36%  Similarity=0.674  Sum_probs=261.6

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHc---CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~---~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      |++|||||||||||++++|+|.+   ||++|+++|++. .++++++++++||++||+|. +.++..++ .|.++|+.+++
T Consensus         1 M~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~-~~~~~~~~ll~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v   77 (339)
T 2x5j_O            1 MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINEL-ADAAGMAHLLKYDTSHGRFA-WEVRQERD-QLFVGDDAIRV   77 (339)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEE
T ss_pred             CCeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCC-CCHHHHHHHhcccccCCCCC-ceEEEcCC-eeEECCEEEEE
Confidence            45899999999999999999999   999999999997 78899999999999999999 87776554 58899999998


Q ss_pred             EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC-CCCC-eEEcccChhccCCCCCeEEcCCcch
Q 022491           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAP-MFVVGVNEKEYKPELDIVSNASCTT  159 (296)
Q Consensus        82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~-~d~~-~~v~gvn~~~l~~~~~iIs~p~C~~  159 (296)
                      ++..||++++|.+.++|+||+|||++.+++.+++|+++|+|++|||+|+ .|.| ++|||+|+++|++..++||||||||
T Consensus        78 ~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~d~p~~~V~gvN~~~~~~~~~iIsnpsCtt  157 (339)
T 2x5j_O           78 LHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTT  157 (339)
T ss_dssp             ECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCCHHH
T ss_pred             EecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccCCCCceeecccCHHHhcCCCCEEECCCcHH
Confidence            8777888999976689999999999999999999999999999999998 4678 9999999999984479999999999


Q ss_pred             hhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEEEEE
Q 022491          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR  239 (296)
Q Consensus       160 tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~~~~  239 (296)
                      ||++|+|+||+++|||+++.++|+|++||+|+.+|.++ +++|++|.+++|++|+.+|+++++.+++|+++++++++|+|
T Consensus       158 n~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~~d~~~-~d~r~~r~a~~NiiP~~tg~a~ei~kvlp~l~gkl~~~a~r  236 (339)
T 2x5j_O          158 NCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVR  236 (339)
T ss_dssp             HHHHHHHHHHHHHHCEEEEEEEEEECCC------------CTTTTSCCCCCCEEECCCHHHHHHHHSGGGTTSEEEEEEE
T ss_pred             HHHHHHHHHHHHccCcceeeEEEEEecccccccccccc-ccccchhhHHhCcccccCChHHHHHHHHHHhcCcEEEEEEE
Confidence            99999999999999999999999999999999999887 58999999999999999999999999999999999999999


Q ss_pred             eeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       240 VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ||+++||++++|++++++++.|||+++|+++|+++||||++|+|+|+||+||+|+||
T Consensus       237 VP~~~g~~~~l~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~  293 (339)
T 2x5j_O          237 VPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPH  293 (339)
T ss_dssp             CSSCSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCS
T ss_pred             ecccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcCCCcEEcccCCcccccccCCCCC
Confidence            999999999999999999999999999999999999999999999999999999997

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=5.1e-50  Score=370.11  Aligned_cols=240  Identities=20%  Similarity=0.239  Sum_probs=208.2

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccccc--ccCCCC--cCcce-eeeCCceeEECCEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQW--KHNEL-KVKDEKTLLFGEKPV   79 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~--s~~~~~--~~~~v-~~~~~~~l~~~~~~i   79 (296)
                      ||+||||||||+||+.++|+|.+||+++|++|++.  +.++++|+++|+  ++|++|  . +.+ ...++ .+.+++   
T Consensus         1 MmikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~--~~~~~~~l~~~dg~s~~g~~~~~-~~v~~~~~~-~l~v~~---   73 (343)
T 2yyy_A            1 MPAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKT--KPDFEARLAVEKGYKLFVAIPDN-ERVKLFEDA-GIPVEG---   73 (343)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEES--SCSHHHHHHHHTTCCEEESSCCH-HHHHHHHHT-TCCCCC---
T ss_pred             CceEEEEECCCHHHHHHHHHHHhCCCceEEEEecC--CHHHHHHHHHhcCCccccccCCC-ceeecccCC-eEEECC---
Confidence            45899999999999999999999999999999996  378888999999  999998  3 333 12221 243332   


Q ss_pred             EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHH-HHHHCCCCeEEeeCCCC-C-CC-eEEcccChhccCCCCCeEEcC
Q 022491           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAA-AHLKGGAKKVVISAPSK-D-AP-MFVVGVNEKEYKPELDIVSNA  155 (296)
Q Consensus        80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~-~~l~~G~k~vvid~~~~-d-~~-~~v~gvn~~~l~~~~~iIs~p  155 (296)
                            +++++.|   ++|+||+|||.+.+.+.++ .++++|+ +|+++++++ | .| ++|||+|+++++ +.++|+||
T Consensus        74 ------~~~~~~~---~vDiV~eatg~~~s~~~a~~~~l~aG~-~VI~sap~~~d~vp~~vV~gvN~~~~~-~~~iIsn~  142 (343)
T 2yyy_A           74 ------TILDIIE---DADIVVDGAPKKIGKQNLENIYKPHKV-KAILQGGEKAKDVEDNFNALWSYNRCY-GKDYVRVV  142 (343)
T ss_dssp             ------BGGGTGG---GCSEEEECCCTTHHHHHHHHTTTTTTC-EEEECTTSCGGGSSEEECTTTTHHHHT-TCSEEEEC
T ss_pred             ------chHHhcc---CCCEEEECCCccccHHHHHHHHHHCCC-EEEECCCccccCCCceEEcccCHHHhc-cCCEEecc
Confidence                  3444534   8999999999999999996 9999995 466777765 5 78 999999999998 47899999


Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeec----cCChhhHHHHhccccCC
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS----STGAAKAVGKVLPALNG  231 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~----~~g~~~~~~~~~pel~~  231 (296)
                      ||+|||++|+|+||++.|||+++.++|+|++||.       +    +.+|++++|++|+    .+|+++++.+++|++++
T Consensus       143 sCtT~~lap~lk~L~~~fgI~~~~vtT~~a~sg~-------~----~~~r~~~~NiiP~~i~~~tg~~k~~~kilp~l~g  211 (343)
T 2yyy_A          143 SCNTTGLCRILYAINSIADIKKARIVLVRRAADP-------N----DDKTGPVNAITPNPVTVPSHHGPDVVSVVPEFEG  211 (343)
T ss_dssp             CHHHHHHHHHHHHHHTTSEEEEEEEEEEEESSCT-------T----CSSCCCSSCCEESSSSSSCTHHHHHHHHCGGGTT
T ss_pred             chhhHHHHHHHHHHHHHcCceEEEEEeeeeccCc-------C----cchhhHHhcccCCCCCCCCcchHHHHHhhhcccc
Confidence            9999999999999999999999999999999983       1    4567899999999    89999999999999999


Q ss_pred             ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          232 KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       232 ~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      +++++|+||||++||+.+++++++++++.||++++|+++++.
T Consensus       212 kl~~~avRVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~v  253 (343)
T 2yyy_A          212 KILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRI  253 (343)
T ss_dssp             SEEEEEEEESCSSCEEEEEEEEEESCCCHHHHHHHHHHSTTE
T ss_pred             ceeeEEEEecccceEEEEEEEEECCCCCHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999999865

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=100.00  E-value=2.3e-44  Score=332.20  Aligned_cols=233  Identities=23%  Similarity=0.267  Sum_probs=181.7

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            6 KIKIGINGF-GRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |+||||+|+ |++|++++|+|.+|  |++|+++++++ ++.+.                         .+.++++.+.+.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~-~~~G~-------------------------~~~~~~~~i~~~   56 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASE-RSEGK-------------------------TYRFNGKTVRVQ   56 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECT-TTTTC-------------------------EEEETTEEEEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECC-CCCCC-------------------------ceeecCceeEEe
Confidence            489999997 99999999999999  89999999976 33321                         122334444443


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--CCCeEEcC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--ELDIVSNA  155 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~~~iIs~p  155 (296)
                       +.+++  +|  .++|+||+|+|++.++++++.++++|+  ++||+|++     +.|.+++++|+++|++  ++++||||
T Consensus        57 -~~~~~--~~--~~vDvVf~a~g~~~s~~~a~~~~~~G~--~vId~s~~~R~~~~~~~~vpevN~~~i~~~~~~~iIanp  129 (336)
T 2r00_A           57 -NVEEF--DW--SQVHIALFSAGGELSAKWAPIAAEAGV--VVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNIIANP  129 (336)
T ss_dssp             -EGGGC--CG--GGCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTTTCGGGGGGGGGTTEEECC
T ss_pred             -cCChH--Hh--cCCCEEEECCCchHHHHHHHHHHHcCC--EEEEcCCccccCCCCCeEeccCCHHHhccccCCcEEECC
Confidence             22333  56  489999999999999999999999999  68888876     4688999999999983  27899999


Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCCCC-----------ccccCcccccceeeeccC-----Ch
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSM-----------KDWRGGRAASFNIIPSST-----GA  218 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~~~-----------~~~~~~r~~~~ni~P~~~-----g~  218 (296)
                      ||||||++|+|+||+++|||+++.++++|++||+|+ .+|.++.           .+++++|.+++|++|+.+     ||
T Consensus       130 ~C~tt~~~~~l~pL~~~~~i~~~~vtt~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh  209 (336)
T 2r00_A          130 NCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQIDQFMDNGY  209 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSSCCTTSCC-----------------------------CCBCTTTCSSC
T ss_pred             ChHHHHHHHHHHHHHHhCCccEEEEEEEEecccCChhhhHHHHHHHHHhhcCCCCCccccchhhhcCcccccCCcccCCc
Confidence            999999999999999999999999999999999985 7776542           257788889999999874     76


Q ss_pred             hhH-------HHHhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          219 AKA-------VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       219 ~~~-------~~~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                      .+|       ..+++|+++++++++|+|||++|||+.++|++++++++.+|++++|++++
T Consensus       210 ~~Ee~k~~~e~~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~~ei~~~~~~~~  269 (336)
T 2r00_A          210 TKEEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDMLEQTD  269 (336)
T ss_dssp             BHHHHHHHHHHHHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCHHHHHHHHHHST
T ss_pred             cHHHHHHHHHHHHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCHHHHHHHHHhCC
Confidence            555       34677888889999999999999999999999999999999999999844

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=6.3e-45  Score=336.00  Aligned_cols=235  Identities=21%  Similarity=0.279  Sum_probs=193.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccccc--ccCCCCcCcce-eeeCCceeEECCEEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNEL-KVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~--s~~~~~~~~~v-~~~~~~~l~~~~~~i~~~   82 (296)
                      |+||||+|+|++|++++|+|.+||++++++|++.  ++...++++.++  ++|++|+ +.+ ...+. .+.+++      
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~--~~~~~~~~~~~~g~~~~~~~~-~~v~~~~~~-~l~v~~------   70 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT--RPDFEARMALKKGYDLYVAIP-ERVKLFEKA-GIEVAG------   70 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEES--SCSHHHHHHHHTTCCEEESSG-GGHHHHHHT-TCCCCE------
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcC--ChhHHHHhcCCcchhhccccc-cceeeecCC-ceEEcC------
Confidence            3899999999999999999999999999999987  333444555555  7888776 432 11111 132211      


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--C--CeEEcccChhccCCCCCeEEcCCcc
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--A--PMFVVGVNEKEYKPELDIVSNASCT  158 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~--~~~v~gvn~~~l~~~~~iIs~p~C~  158 (296)
                         +++++.   .++|+||+|||++.+++.++.++++|++  |||.++++  .  |++|||+|+++++ ++++|||||||
T Consensus        71 ---~~~~~~---~~vDvV~~atp~~~~~~~a~~~l~aG~~--VId~sp~~~d~~~~~~V~gvN~e~~~-~~~iIanp~C~  141 (337)
T 1cf2_P           71 ---TVDDML---DEADIVIDCTPEGIGAKNLKMYKEKGIK--AIFQGGEKHEDIGLSFNSLSNYEESY-GKDYTRVVSCN  141 (337)
T ss_dssp             ---EHHHHH---HTCSEEEECCSTTHHHHHHHHHHHHTCC--EEECTTSCHHHHSCEECHHHHGGGGT-TCSEEEECCHH
T ss_pred             ---CHHHHh---cCCCEEEECCCchhhHHHHHHHHHcCCE--EEEecCCCCccCCCeEEeeeCHHHhc-CCCEEEcCCcH
Confidence               222331   3799999999999999999999999974  55555543  3  8999999999998 68999999999


Q ss_pred             hhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeec----cCChhhHHHHhccccCCcee
Q 022491          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS----STGAAKAVGKVLPALNGKLT  234 (296)
Q Consensus       159 ~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~----~~g~~~~~~~~~pel~~~v~  234 (296)
                      |||++|+|+||++.|||+++.++|+|++|+       ++    +.+|.+.+|++|+    .+++.+|+.+++ +++  ++
T Consensus       142 tt~l~~~l~pL~~~~gI~~~~vtt~~a~s~-------p~----~~~~~~~~NiiP~~i~~~~~~~~ei~kil-~l~--v~  207 (337)
T 1cf2_P          142 TTGLCRTLKPLHDSFGIKKVRAVIVRRGAD-------PA----QVSKGPINAIIPNPPKLPSHHGPDVKTVL-DIN--ID  207 (337)
T ss_dssp             HHHHHHHHHHHHHHHCEEEEEEEEEEESSC-------TT----CTTCCCSSCCEESSSSSSCTHHHHHHTTS-CCC--EE
T ss_pred             HHHHHHHHHHHHHhcCcceeEEEEEEEeec-------CC----ccccchhcCEEeccCCCCCcchHHHHhhh-eeE--EE
Confidence            999999999999999999999999999886       22    3556789999999    578899999999 874  99


Q ss_pred             EEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       235 ~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      ++|+|||++|||+.++|++++++++.||++++|++++..
T Consensus       208 ~t~~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~~~~~v  246 (337)
T 1cf2_P          208 TMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRV  246 (337)
T ss_dssp             EEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTTE
T ss_pred             EEEEEcCccCeEEEEEEEEECCCCCHHHHHHHHHhCCCc
Confidence            999999999999999999999999999999999999764

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=100.00  E-value=7e-44  Score=328.25  Aligned_cols=229  Identities=24%  Similarity=0.355  Sum_probs=192.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHH--cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~--~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||||+|+ |++|++++|+|.  +||.+++..+.+. ..                         .|+.+.++++.+.++.
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~-~~-------------------------~g~~l~~~g~~i~v~~   54 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASP-RS-------------------------AGVRLAFRGEEIPVEP   54 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECG-GG-------------------------SSCEEEETTEEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeecc-cc-------------------------CCCEEEEcCceEEEEe
Confidence            47999997 999999999999  7887777655432 11                         1113566677776765


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCCCCeEEcCCcc
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPELDIVSNASCT  158 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~~~iIs~p~C~  158 (296)
                      . +++  +|   ++|+||+|+|++.++++++.++++|+  ++||+|++     +.|.++||+|+++|+..+++|||||||
T Consensus        55 ~-~~~--~~---~~DvV~~a~g~~~s~~~a~~~~~~G~--~vId~s~~~R~~~~~~~~vpevN~~~i~~~~~iIanp~C~  126 (331)
T 2yv3_A           55 L-PEG--PL---PVDLVLASAGGGISRAKALVWAEGGA--LVVDNSSAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCT  126 (331)
T ss_dssp             C-CSS--CC---CCSEEEECSHHHHHHHHHHHHHHTTC--EEEECSSSSTTCTTSCBCCTTSCGGGGGGCSSEEECCCHH
T ss_pred             C-Chh--hc---CCCEEEECCCccchHHHHHHHHHCCC--EEEECCCccccCCCCCEEEcCcCHHHhcCCCCEEECCCHH
Confidence            4 444  57   89999999999999999999999999  78888876     478999999999998336899999999


Q ss_pred             hhhhHhHHHHHHhhcCeeEEEEEEEeecCCc------------ccccCCCCCccccCcccccceeeecc-----CChhhH
Q 022491          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITAT------------QKTVDGPSMKDWRGGRAASFNIIPSS-----TGAAKA  221 (296)
Q Consensus       159 ~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~------------~~~~d~~~~~~~~~~r~~~~ni~P~~-----~g~~~~  221 (296)
                      |||++|+|+||++.|+|+++.++++|++||+            |.++|+++.++++++|.+++|++|+.     ++|++|
T Consensus       127 tt~~~~~l~pL~~~~~I~~~~vtt~~~~SgaG~~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiP~~~~~~~~~ht~e  206 (331)
T 2yv3_A          127 TAILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTRE  206 (331)
T ss_dssp             HHHHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHTSSCCCCCSSSSCCTTCCBSCCSCBCTTSCBHH
T ss_pred             HHHHHHHHHHHHHhCCceEEEEEEEeecccCCcchhHHHHHHHHhhhcCccccccccchhhhcCcccccCccccCCCcHH
Confidence            9999999999999999999999999999999            45566655568899999999999987     445555


Q ss_pred             ---H----HHhc--cccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          222 ---V----GKVL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       222 ---~----~~~~--pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                         +    .+++  |+++  ++++|+|||++|||+.++|++++++++.||++++|++++
T Consensus       207 ~~~i~~e~~kil~~~~l~--v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~  263 (331)
T 2yv3_A          207 EMKVVWETHKIFGDDTIR--ISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKEAP  263 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCE--EEEECCBCSCSSEEEEEEEEEESSCCCHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHhCCCCce--EEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence               5    5676  7774  999999999999999999999999999999999999855

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=100.00  E-value=9.1e-43  Score=323.52  Aligned_cols=235  Identities=20%  Similarity=0.240  Sum_probs=187.5

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCC-----CCcCcceeeeCCceeEECCEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG-----QWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~-----~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      |++||||+|+ ||+|++|+|+|.+||++|++.+.++ ++.+.     ++...|+     .++ ..     .+++.     
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~-~saGk-----~~~~~~p~~~~~~~~-~~-----~~~~~-----   68 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGK-GSVGK-----PYGEVVRWQTVGQVP-KE-----IADME-----   68 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEES-TTTTS-----BHHHHCCCCSSSCCC-HH-----HHTCB-----
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECc-hhcCC-----ChhHhcccccccccc-cc-----cccce-----
Confidence            3589999999 9999999999999999999999877 34332     1233333     121 00     00011     


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--C---
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--E---  148 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~---  148 (296)
                        + ...+++.+    .++|+||+|+|++.++++++.++++|+  +|||+|++     +.|..++++|+++++.  .   
T Consensus        69 --v-~~~~~~~~----~~vDvvf~a~p~~~s~~~a~~~~~~G~--~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~  139 (359)
T 4dpk_A           69 --I-KPTDPKLM----DDVDIIFSPLPQGAAGPVEEQFAKEGF--PVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRK  139 (359)
T ss_dssp             --C-EECCGGGC----TTCCEEEECCCTTTHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHH
T ss_pred             --E-EeCCHHHh----cCCCEEEECCChHHHHHHHHHHHHCCC--EEEEcCCCccCCCCccEEEcCCCHHHHhhHhhccc
Confidence              1 11233332    489999999999999999999999999  67777765     4788899999998742  2   


Q ss_pred             -----CCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCC----hh
Q 022491          149 -----LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG----AA  219 (296)
Q Consensus       149 -----~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g----~~  219 (296)
                           .++||||||||||++|+|+||++.|||+++.++++|++||+|+.  ..+      .+.+++|++|+..+    +.
T Consensus       140 ~~~~~~~iIanPgC~tt~~~l~L~PL~~~~gi~~v~v~t~~g~SGaG~~--~~~------~~~~~~N~ipy~~~~e~k~~  211 (359)
T 4dpk_A          140 RREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYP--GIP------SLDVVDNILPLGDGYDAKTI  211 (359)
T ss_dssp             HHTCSSEEEECCCHHHHHHHHHHHHHHHHSCEEEEEEEEEECSGGGCSS--CSB------GGGTTTCCEECCHHHHHHHH
T ss_pred             ccccCccEEECCCcHHHHHHHHHHHHHHhcCCcEEEEEEEeccccCCCc--Ccc------ChHHhCCeEeecCcHHHHHH
Confidence                 36999999999999999999999999999999999999999875  111      14578899999864    34


Q ss_pred             hHHHHhccccCC----------ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          220 KAVGKVLPALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       220 ~~~~~~~pel~~----------~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      +|+.++++++.+          +++|+|+|||++|||++++|++++++++.||++++|+++|+.
T Consensus       212 ~Ei~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~  275 (359)
T 4dpk_A          212 KEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGE  275 (359)
T ss_dssp             HHHHHHHHTSCCSCCCSCGGGCEEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCH
T ss_pred             HHHHHHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcc
Confidence            567788887765          689999999999999999999999999999999999999986

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=100.00  E-value=9.1e-43  Score=323.52  Aligned_cols=235  Identities=20%  Similarity=0.240  Sum_probs=187.5

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCC-----CCcCcceeeeCCceeEECCEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG-----QWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~-----~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      |++||||+|+ ||+|++|+|+|.+||++|++.+.++ ++.+.     ++...|+     .++ ..     .+++.     
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~-~saGk-----~~~~~~p~~~~~~~~-~~-----~~~~~-----   68 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGK-GSVGK-----PYGEVVRWQTVGQVP-KE-----IADME-----   68 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEES-TTTTS-----BHHHHCCCCSSSCCC-HH-----HHTCB-----
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECc-hhcCC-----ChhHhcccccccccc-cc-----cccce-----
Confidence            3589999999 9999999999999999999999877 34332     1233333     121 00     00011     


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC--C---
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP--E---  148 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~--~---  148 (296)
                        + ...+++.+    .++|+||+|+|++.++++++.++++|+  +|||+|++     +.|..++++|+++++.  .   
T Consensus        69 --v-~~~~~~~~----~~vDvvf~a~p~~~s~~~a~~~~~~G~--~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~  139 (359)
T 4dpl_A           69 --I-KPTDPKLM----DDVDIIFSPLPQGAAGPVEEQFAKEGF--PVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRK  139 (359)
T ss_dssp             --C-EECCGGGC----TTCCEEEECCCTTTHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHH
T ss_pred             --E-EeCCHHHh----cCCCEEEECCChHHHHHHHHHHHHCCC--EEEEcCCCccCCCCccEEEcCCCHHHHhhHhhccc
Confidence              1 11233332    489999999999999999999999999  67777765     4788899999998742  2   


Q ss_pred             -----CCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCC----hh
Q 022491          149 -----LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG----AA  219 (296)
Q Consensus       149 -----~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g----~~  219 (296)
                           .++||||||||||++|+|+||++.|||+++.++++|++||+|+.  ..+      .+.+++|++|+..+    +.
T Consensus       140 ~~~~~~~iIanPgC~tt~~~l~L~PL~~~~gi~~v~v~t~~g~SGaG~~--~~~------~~~~~~N~ipy~~~~e~k~~  211 (359)
T 4dpl_A          140 RREWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYP--GIP------SLDVVDNILPLGDGYDAKTI  211 (359)
T ss_dssp             HHTCSSEEEECCCHHHHHHHHHHHHHHHHSCEEEEEEEEEBCGGGGCSS--CSB------HHHHTTCCEECCHHHHHHHH
T ss_pred             ccccCccEEECCCcHHHHHHHHHHHHHHhcCCcEEEEEEEeccccCCCc--Ccc------ChHHhCCeEeecCcHHHHHH
Confidence                 36999999999999999999999999999999999999999875  111      14577899999864    34


Q ss_pred             hHHHHhccccCC----------ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          220 KAVGKVLPALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       220 ~~~~~~~pel~~----------~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      +|+.++++++.+          +++|+|+|||++|||++++|++++++++.||++++|+++|+.
T Consensus       212 ~Ei~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~  275 (359)
T 4dpl_A          212 KEIFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGE  275 (359)
T ss_dssp             HHHHHHHTTSCCSSCCSCGGGCEEEEECEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCH
T ss_pred             HHHHHHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcc
Confidence            567788887765          689999999999999999999999999999999999999986

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=9.2e-43  Score=322.02  Aligned_cols=233  Identities=14%  Similarity=0.167  Sum_probs=187.4

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHH--cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~--~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      |++||+|+|+ |++|++++|+|.  +||.+++++++++ .+.+.                         .+.+++..+.+
T Consensus         5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~-~~~g~-------------------------~~~~~g~~i~~   58 (340)
T 2hjs_A            5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA-ESAGQ-------------------------RMGFAESSLRV   58 (340)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT-TTTTC-------------------------EEEETTEEEEC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecC-CCCCC-------------------------ccccCCcceEE
Confidence            4579999998 999999999999  8899999999876 33221                         12233333333


Q ss_pred             EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC----CCCeEEcccChhccCCCC---CeEEc
Q 022491           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----DAPMFVVGVNEKEYKPEL---DIVSN  154 (296)
Q Consensus        82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~----d~~~~v~gvn~~~l~~~~---~iIs~  154 (296)
                      .. .+++.  |  .++|+||+|+|++.++++++.++++|+|  +||++++    +.|..++++|+++|+ ++   ++|||
T Consensus        59 ~~-~~~~~--~--~~~DvV~~a~g~~~s~~~a~~~~~aG~k--vId~Sa~~rd~~~~~~vpevN~~~i~-~~~~~~iIan  130 (340)
T 2hjs_A           59 GD-VDSFD--F--SSVGLAFFAAAAEVSRAHAERARAAGCS--VIDLSGALEPSVAPPVMVSVNAERLA-SQAAPFLLSS  130 (340)
T ss_dssp             EE-GGGCC--G--GGCSEEEECSCHHHHHHHHHHHHHTTCE--EEETTCTTTTTTSCBCCHHHHGGGGG-GSCSSCEEEC
T ss_pred             ec-CCHHH--h--cCCCEEEEcCCcHHHHHHHHHHHHCCCE--EEEeCCCCCCCCCCeEEcCcCHHHHh-cCcCCCEEEc
Confidence            32 23433  6  4899999999999999999999999995  4555443    257788889999998 44   79999


Q ss_pred             CCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCCCC--cc---------ccCcccccceeeeccC-----C
Q 022491          155 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSM--KD---------WRGGRAASFNIIPSST-----G  217 (296)
Q Consensus       155 p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~~~--~~---------~~~~r~~~~ni~P~~~-----g  217 (296)
                      |||||||++|+|+||++.|+|+++.++++|++||+|+ .+|.++.  ++         ..++|.+++|++|+..     +
T Consensus       131 p~C~tt~~~~~l~pL~~~~~i~~~~v~t~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~g  210 (340)
T 2hjs_A          131 PCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEG  210 (340)
T ss_dssp             CCHHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTS
T ss_pred             CCHHHHHHHHHHHHHHHhcCcceEEEEEecccCCCCccccHhHHHHHHHHhccCCccccccchhhccCeeccccCcccCC
Confidence            9999999999999999999999999999999999995 4654220  12         2345778999999976     7


Q ss_pred             hhhH-------HHHhccccCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          218 AAKA-------VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       218 ~~~~-------~~~~~pel~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                      |.+|       ..+++|+++++++++|+|||++|||++++|++++++++.||++++|++++
T Consensus       211 h~~Ee~k~~~~~~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~~~  271 (340)
T 2hjs_A          211 HSAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATK  271 (340)
T ss_dssp             CBHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHST
T ss_pred             ccHHHHHHHHHHHHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence            6666       34678888889999999999999999999999999999999999999754

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=100.00  E-value=2.9e-43  Score=327.48  Aligned_cols=233  Identities=12%  Similarity=0.139  Sum_probs=187.8

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+ |++|++++|+|.+||++|+++++++ .+.+     .++++.|++|. +.+ . .  ++.        +. 
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~-~~~g-----~~~~~~~~~~~-~~v-~-~--dl~--------~~-   75 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTAD-RKAG-----QSMESVFPHLR-AQK-L-P--TLV--------SV-   75 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCS-TTTT-----SCHHHHCGGGT-TSC-C-C--CCB--------CG-
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCc-hhcC-----CCHHHhCchhc-Ccc-c-c--cce--------ec-
Confidence            389999997 9999999999999999999999986 4443     35688898887 321 0 0  121        11 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC---C------------------CeEEccc---
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD---A------------------PMFVVGV---  140 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d---~------------------~~~v~gv---  140 (296)
                       + ++ .|  .++|+||+|+|++.+++.++.+ ++|+  +|||+|++.   .                  +.++||+   
T Consensus        76 -~-~~-~~--~~vDvVf~atp~~~s~~~a~~~-~aG~--~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~  147 (359)
T 1xyg_A           76 -K-DA-DF--STVDAVFCCLPHGTTQEIIKEL-PTAL--KIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEI  147 (359)
T ss_dssp             -G-GC-CG--GGCSEEEECCCTTTHHHHHHTS-CTTC--EEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHH
T ss_pred             -c-hh-Hh--cCCCEEEEcCCchhHHHHHHHH-hCCC--EEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCcc
Confidence             2 33 46  3899999999999999999999 9999  789988862   2                  4689998   


Q ss_pred             ChhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee--EEEEEEEeecCCccc-ccCCCCCccccCcccccceeeeccCC
Q 022491          141 NEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSSTG  217 (296)
Q Consensus       141 n~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~--~~~~~~v~a~sg~~~-~~d~~~~~~~~~~r~~~~ni~P~~~g  217 (296)
                      |+++|+ ++++||||||||||++|+|+||++.|+|+  ++.++++|++||+|+ ..|..+ .+     .+..|++|+..+
T Consensus       148 n~~~i~-~~~iIanpgC~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~-~~-----~~~~ni~py~~~  220 (359)
T 1xyg_A          148 LREDIK-KARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGVSGAGRGAKEANL-YS-----EIAEGISSYGVT  220 (359)
T ss_dssp             HHHHHH-TCSEEECCCHHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGGGB-HH-----HHTTCCEECSCS
T ss_pred             CHHHhc-cCCEEECCCcHHHHHHHHHHHHHHcCCCCCCeEEEEEEEEccccCcccchhhh-hH-----HHhcCeeccccc
Confidence            889998 68999999999999999999999999999  999999999999997 455432 12     245688888854


Q ss_pred             ---hhhHHHHhccccC---CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          218 ---AAKAVGKVLPALN---GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       218 ---~~~~~~~~~pel~---~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                         |.+|+.+.+..+.   .+++|+|+|||++|||+.++|++++++++.||++++|+++|++
T Consensus       221 ~h~h~pEi~~~l~~~~~~~~~v~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~y~~  282 (359)
T 1xyg_A          221 RHRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYED  282 (359)
T ss_dssp             CCTHHHHHHHHHHHHHTSCCCCEEECEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTT
T ss_pred             ccccHHHHHHHHHHhcCCCCCEEEEEEEecccceEEEEEEEEeCCCCCHHHHHHHHHHhhCC
Confidence               4455443333221   2699999999999999999999999999999999999999975

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.4e-43  Score=326.28  Aligned_cols=239  Identities=22%  Similarity=0.219  Sum_probs=192.1

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |+||||+|+ |++|++++|+|.+||++|++++++...+.+     ..+++.|+.+.++.        +.+++..+.+ .+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g-----~~~~~~~~~~~~~~--------~~~~~~~~~~-~~   69 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIG-----KKYKDAVKWIEQGD--------IPEEVQDLPI-VS   69 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTT-----SBHHHHCCCCSSSS--------CCHHHHTCBE-EC
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcC-----CCHHHhcCcccccc--------cccCCceeEE-ee
Confidence            489999997 999999999999999999999984212332     13577777652010        1111111222 22


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC----------CC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP----------EL  149 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~----------~~  149 (296)
                      .+++  .|  .++|+||+|||++.+++.++.++++|+  .|||++++     +.|.+++++|++.|..          ++
T Consensus        70 ~d~~--~~--~~vDvVf~atp~~~s~~~a~~~~~aG~--~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~  143 (350)
T 2ep5_A           70 TNYE--DH--KDVDVVLSALPNELAESIELELVKNGK--IVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKG  143 (350)
T ss_dssp             SSGG--GG--TTCSEEEECCCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSS
T ss_pred             CCHH--Hh--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECCccccCCCCCCeeCCccCHHHhcChHhhhhhcccCc
Confidence            2333  25  489999999999999999999999999  58999887     4789999999876651          35


Q ss_pred             CeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCC----hhhHHHHh
Q 022491          150 DIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG----AAKAVGKV  225 (296)
Q Consensus       150 ~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g----~~~~~~~~  225 (296)
                      ++||||||||||++|+|+||+++||++++.++++|++||+|+..  .+      .+.+.+|++|+..+    +..|..++
T Consensus       144 ~iIanpgC~tt~~~l~l~pL~~~~gi~~i~v~t~~~~SGaG~~~--~~------~~~~~~ni~py~~~~e~k~~~E~~~~  215 (350)
T 2ep5_A          144 ILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGYNG--IS------FMAIEGNIIPYIKGEEDKIAKELTKL  215 (350)
T ss_dssp             EEEECCCHHHHHHHHHHGGGHHHHHTSEEEEEEEECGGGGCSSS--SB------HHHHTTCCBCCCTTHHHHHHHHHHHH
T ss_pred             eEEEcCchHHHHHHHHHHHHHHhcCCcEEEEEEEEecCcCCCCC--CC------ChHHhCCEEeccCCcchHHHHHHHHH
Confidence            79999999999999999999999999999999999999998751  11      34578899999977    35666789


Q ss_pred             ccccCC--------ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491          226 LPALNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (296)
Q Consensus       226 ~pel~~--------~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~  272 (296)
                      +|++++        +++|+|+|||++|||++++|++++++++.||++++|+++|+
T Consensus       216 l~~~~g~~~~~~~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~~~  270 (350)
T 2ep5_A          216 NGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKS  270 (350)
T ss_dssp             TCEECSSSEECCCCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHHHHHHTCCC
T ss_pred             HhhccccccccccccEEEEeEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhc
Confidence            998766        69999999999999999999999999999999999999996

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=100.00  E-value=1.8e-42  Score=320.61  Aligned_cols=228  Identities=14%  Similarity=0.066  Sum_probs=187.4

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |+||||+|+ |++|++++|+|.+||++|++++++. .+.+     .++++.|++|. +.    .  .+.       + . 
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~-~~~g-----~~~~~~~~~~~-g~----~--~~~-------~-~-   61 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSR-RFAG-----EPVHFVHPNLR-GR----T--NLK-------F-V-   61 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCS-TTTT-----SBGGGTCGGGT-TT----C--CCB-------C-B-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECc-hhhC-----chhHHhCchhc-Cc----c--ccc-------c-c-
Confidence            389999997 9999999999999999999999986 3432     25688888876 31    0  121       1 1 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC---C-----------------CeEEccc---C
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD---A-----------------PMFVVGV---N  141 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d---~-----------------~~~v~gv---n  141 (296)
                       +.+  +|  .++|+||+|+|++.+++.++.++++|+  .|||+|++.   .                 +.++||+   |
T Consensus        62 -~~~--~~--~~vDvV~~a~g~~~s~~~a~~~~~aG~--~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n  134 (345)
T 2ozp_A           62 -PPE--KL--EPADILVLALPHGVFAREFDRYSALAP--VLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELY  134 (345)
T ss_dssp             -CGG--GC--CCCSEEEECCCTTHHHHTHHHHHTTCS--EEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHH
T ss_pred             -chh--Hh--cCCCEEEEcCCcHHHHHHHHHHHHCCC--EEEEcCccccCCChHHHHhhhccccchhhhccCcEeccccC
Confidence             222  36  489999999999999999999999999  588888752   1                 4789999   8


Q ss_pred             hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee--EEEEEEEeecCCcccc-cCCCCCccccCcccccceeeeccCCh
Q 022491          142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSMKDWRGGRAASFNIIPSSTGA  218 (296)
Q Consensus       142 ~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~--~~~~~~v~a~sg~~~~-~d~~~~~~~~~~r~~~~ni~P~~~g~  218 (296)
                      +++++ ++++||||||||||++|+|+||++.|+|+  ++.++++|++||+|+. +|..+ .+     .+..|++|+..+.
T Consensus       135 ~~~i~-~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~-~~-----~~~~n~~py~~~~  207 (345)
T 2ozp_A          135 REALK-GADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLLISTSAGGAEASPASH-HP-----ERAGSIRVYKPTG  207 (345)
T ss_dssp             HHHHH-TCSEEECCCHHHHHHHHHHHHHHHTTCBCSSCEEEEEEECSGGGCSSCCGGGC-HH-----HHTTCCEEEECSC
T ss_pred             HHHhh-cCCEEeCCCcHHHHHHHHHHHHHHhcCCCCCeEEEEEEEEccccCcccccccc-ch-----hhccccccCCCCC
Confidence            89998 68999999999999999999999999999  9999999999999853 55443 12     2457889988652


Q ss_pred             hhHHHHhccccC-----C-ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          219 AKAVGKVLPALN-----G-KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       219 ~~~~~~~~pel~-----~-~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                          ++|+||++     + +++|+|+|||++|||+.++|++++++++.|||+++|+++|++
T Consensus       208 ----h~~~pei~~~l~~~~~v~~~~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~y~~  264 (345)
T 2ozp_A          208 ----HRHTAEVVENLPGRPEVHLTAIATDRVRGILMTAQCFVQDGWSERDVWQAYREAYAG  264 (345)
T ss_dssp             ----CTHHHHHHHTSSSCCCEEEEEEECSCSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTT
T ss_pred             ----ccChHhHHHHhCCCCCeEEEEEEeccccEEEEEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence                44555554     5 799999999999999999999999999999999999999975

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=100.00  E-value=6.5e-42  Score=319.23  Aligned_cols=244  Identities=22%  Similarity=0.292  Sum_probs=184.4

Q ss_pred             CCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         4 ~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |+|+||||+|+ ||+|++++|+|.+||++||+.+.+..++.+.     ++.+.|+.+.+..+. ...+++        .+
T Consensus        17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk-----~~~~~~~~~~~~~~p-~~~~~~--------~v   82 (381)
T 3hsk_A           17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGK-----KYKDAASWKQTETLP-ETEQDI--------VV   82 (381)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTS-----BHHHHCCCCCSSCCC-HHHHTC--------BC
T ss_pred             CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCC-----CHHHhcccccccccc-cccccc--------eE
Confidence            34689999999 9999999999999999999998632244432     223444322100000 000011        11


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccC-----------
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK-----------  146 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~-----------  146 (296)
                      .+.++++ +|  .++|+||+|+|++.+++++++++++|+  +|||+|++     +.|++++++|++.+.           
T Consensus        83 ~~~~~~~-~~--~~~Dvvf~alp~~~s~~~~~~~~~~G~--~VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~~~  157 (381)
T 3hsk_A           83 QECKPEG-NF--LECDVVFSGLDADVAGDIEKSFVEAGL--AVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVS  157 (381)
T ss_dssp             EESSSCT-TG--GGCSEEEECCCHHHHHHHHHHHHHTTC--EEEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHHHH
T ss_pred             EeCchhh-hc--ccCCEEEECCChhHHHHHHHHHHhCCC--EEEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhhcc
Confidence            2223331 23  489999999999999999999999999  78888876     378999999977653           


Q ss_pred             ----CCCCeEEcCCcchhhhHhHHHHHHhhcC-eeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCCh---
Q 022491          147 ----PELDIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA---  218 (296)
Q Consensus       147 ----~~~~iIs~p~C~~tal~~~l~~L~~~~g-i~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~---  218 (296)
                          ++.++|||||||||+++++|+||++.|| |++..++++|++||+|+....    .   .+.+++|++|+..+.   
T Consensus       158 ~~~i~~~~iIaNPgC~tt~~~laL~PL~~~~glI~~v~v~t~~gvSGAG~~~~~----~---~~~~~~N~~Py~~~~e~k  230 (381)
T 3hsk_A          158 KGGKKPGFIICISNCSTAGLVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPGV----S---GMDILDNIVPYISGEEDK  230 (381)
T ss_dssp             TTCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEEEEBCCCC------C----C---HHHHTTCCBCCCTTHHHH
T ss_pred             cccccCCcEEECCCcHHHHHHHHHHHHHHhcCCceEEEEEEeeccCCCCccCCc----c---hhhhhcChhhcccchHHH
Confidence                2567999999999999999999999999 899999999999999863211    1   135778999999753   


Q ss_pred             -hhHHHHhccccCC-------------ceeEEEEEeeeCceEEEEEEEEeec--CCCHHHHHHHHHHhhcC
Q 022491          219 -AKAVGKVLPALNG-------------KLTGMSFRVPTVDVSVVDLTVRLEK--EATYEEIKNAIKEESEG  273 (296)
Q Consensus       219 -~~~~~~~~pel~~-------------~v~~~~~~VP~~~g~~~~~~~~l~~--~~~~~ev~~~~~~~~~~  273 (296)
                       ..|+.++++.+.+             +++|+|+|||++|||++++|+++++  +++.||++++|+++|++
T Consensus       231 ~~~Ei~kiL~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~~~~~t~eei~~~l~~~y~~  301 (381)
T 3hsk_A          231 LEWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLREYECA  301 (381)
T ss_dssp             HHHHHHHHTCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESSSSCCCHHHHHHHHHHCBCH
T ss_pred             HHHHHHHHhhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCCCCCCCHHHHHHHHHHhhcc
Confidence             4667788887655             6899999999999999999999998  89999999999999975

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=4.3e-42  Score=319.51  Aligned_cols=242  Identities=23%  Similarity=0.282  Sum_probs=189.5

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEec-CCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND-PFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~-~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      ||+||||+|+ |++|++++|+|.+||++|++++++ + .+.+.     .+++.|+.+....        +..++..+.+ 
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~-~~~g~-----~~~~~~~~~~~~~--------~~~~~~~~~~-   71 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASE-RSAGK-----KYKDACYWFQDRD--------IPENIKDMVV-   71 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECT-TTTTS-----BHHHHSCCCCSSC--------CCHHHHTCBC-
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEccc-ccccc-----cHHHhcccccccc--------cccCceeeEE-
Confidence            4589999997 999999999999999999999984 4 22221     2466676542000        0000011111 


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC----------
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP----------  147 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~----------  147 (296)
                      ...++++  |...++|+||+|+|++.+++.++.++++|+  .|||++++     +.|.+++++|++.|..          
T Consensus        72 ~~~~~~~--~~~~~~DvV~~atp~~~~~~~a~~~~~aG~--~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~  147 (354)
T 1ys4_A           72 IPTDPKH--EEFEDVDIVFSALPSDLAKKFEPEFAKEGK--LIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGW  147 (354)
T ss_dssp             EESCTTS--GGGTTCCEEEECCCHHHHHHHHHHHHHTTC--EEEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCC
T ss_pred             EeCCHHH--HhcCCCCEEEECCCchHHHHHHHHHHHCCC--EEEECCchhcCCCCCCccCcccCHHHhcChhhhhhhccc
Confidence            2224443  532389999999999999999999999999  69999886     3688999999876651          


Q ss_pred             CCCeEEcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCC----hhhHHH
Q 022491          148 ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTG----AAKAVG  223 (296)
Q Consensus       148 ~~~iIs~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g----~~~~~~  223 (296)
                      ++++|+||||||||++|+|+||++.|||+++.++++|++||+|+..  .+      .+.+.+|++|+..+    +.+|+.
T Consensus       148 ~~~iIanpgC~tt~~~l~l~pL~~~~gi~~~~v~t~~~~SGaG~~~--~~------~~~~~~ni~py~~~~~~k~~~Ei~  219 (354)
T 1ys4_A          148 DGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNG--VP------SMAILDNLIPFIKNEEEKMQTESL  219 (354)
T ss_dssp             SSEEEECCCHHHHHHHHHHHHHHHHHCCSEEEEEEEBCSGGGCTTT--SC------HHHHTTCCBSCCTTHHHHHHHHHH
T ss_pred             CCeEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcCcCCccc--cc------chHHhCCEEeccCchhhHHHHHHH
Confidence            2469999999999999999999999999999999999999998752  11      24567899999976    355666


Q ss_pred             HhccccCC--------ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          224 KVLPALNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       224 ~~~pel~~--------~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      ++++++.+        +++++|+|||++|||++++|++++++++.||++++|+++|+.
T Consensus       220 ~~l~~~~g~~~~~~~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~~~~  277 (354)
T 1ys4_A          220 KLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDPL  277 (354)
T ss_dssp             HHTSEEETTEEECCCCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHCCTT
T ss_pred             HHHhccccccccCCCceEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhcc
Confidence            77776544        689999999999999999999999999999999999999973

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=100.00  E-value=5.1e-42  Score=319.54  Aligned_cols=235  Identities=15%  Similarity=0.164  Sum_probs=183.7

Q ss_pred             eEEEEEec-CHHHHHHHH-HHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF-GRIGRLVAR-VALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r-~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      +||||+|+ |++|++++| +|.+|+  .+++..+.+. + .+.   .      .+.+.               ++.+.+.
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s-~G~---~------v~~~~---------------g~~i~~~   55 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-Q-LGQ---A------APSFG---------------GTTGTLQ   55 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-S-TTS---B------CCGGG---------------TCCCBCE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-C-CCC---C------ccccC---------------CCceEEE
Confidence            79999998 999999999 777774  5777777654 2 321   1      11111               1112222


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCCC-----CeE
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPEL-----DIV  152 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~~-----~iI  152 (296)
                      ...+++  +|  .++|+||+|+|++.++++++.++++|+|++|||++++     +.|.+++++|+++++ +.     ++|
T Consensus        56 ~~~~~~--~~--~~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~-~~~~~g~~~I  130 (367)
T 1t4b_A           56 DAFDLE--AL--KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT-DGLNNGIRTF  130 (367)
T ss_dssp             ETTCHH--HH--HTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH-HHHHTTCCEE
T ss_pred             ecCChH--Hh--cCCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHh-hhhhcCCCEE
Confidence            222233  26  4899999999999999999999999998899999987     578999999999887 32     799


Q ss_pred             EcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc-------------------cCCCCCc--cc----------
Q 022491          153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-------------------VDGPSMK--DW----------  201 (296)
Q Consensus       153 s~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~-------------------~d~~~~~--~~----------  201 (296)
                      +||||||||++|+|+||++.++|++..++++|++||+|+.                   .|.++..  ++          
T Consensus       131 anp~Cttt~~~~al~pL~~~~~I~~~~vtt~~a~SGaG~~~~~el~~~~~~l~~~~~~~~~~~~~~ild~~r~~~~~~~~  210 (367)
T 1t4b_A          131 VGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRS  210 (367)
T ss_dssp             EECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHcCCCcEEEEEEEeccccccccchHHHHHHHhhhhccccccccccccchhhhhhcccccccc
Confidence            9999999999999999999999999999999999999742                   2333310  22          


Q ss_pred             ------cCcccccceeeeccCC-----h-------hhHHHHhccc-cCCceeEEEEEeeeCceEEEEEEEEeecCCCHHH
Q 022491          202 ------RGGRAASFNIIPSSTG-----A-------AKAVGKVLPA-LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEE  262 (296)
Q Consensus       202 ------~~~r~~~~ni~P~~~g-----~-------~~~~~~~~pe-l~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~e  262 (296)
                            .+++.+++|++|+..+     |       .+|..+++++ ...+++++|+|||++|||+.++|++++++++.||
T Consensus       211 ~~~~~~~f~~~~a~NiiP~~~~~~~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~ee  290 (367)
T 1t4b_A          211 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPT  290 (367)
T ss_dssp             TCSCCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHH
T ss_pred             ccCcccccchhhhCceEEEecCccccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCHHH
Confidence                  2367889999999965     3       4445567754 3447999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 022491          263 IKNAIKEESE  272 (296)
Q Consensus       263 v~~~~~~~~~  272 (296)
                      ++++|++++.
T Consensus       291 i~~~l~~~~~  300 (367)
T 1t4b_A          291 VEELLAAHNP  300 (367)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHhcCC
Confidence            9999999853

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=100.00  E-value=8.1e-42  Score=314.27  Aligned_cols=229  Identities=15%  Similarity=0.149  Sum_probs=183.9

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCC--ChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFI--STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~--~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||+|+|+ |++|++++|+|.+||+++++++.++..  +.+.     .+.+.||+|. +..      ++.       + .
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk-----~~~~~~p~~~-~~~------~~~-------v-~   64 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGK-----LISDLHPQLK-GIV------ELP-------L-Q   64 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTS-----BHHHHCGGGT-TTC------CCB-------E-E
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCC-----chHHhCcccc-Ccc------cee-------E-e
Confidence            89999999 999999999999999999999987631  3331     2356677766 210      121       1 1


Q ss_pred             cC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC----C--C---------------CeEEccc-
Q 022491           84 FR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----D--A---------------PMFVVGV-  140 (296)
Q Consensus        84 ~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~----d--~---------------~~~v~gv-  140 (296)
                      .. +++++   ..++|+||+|+|++.++++++.++++|+  +|||+|++    |  .               +++|||+ 
T Consensus        65 ~~~~~~~~---~~~~Dvvf~a~p~~~s~~~~~~~~~~g~--~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglP  139 (337)
T 3dr3_A           65 PMSDISEF---SPGVDVVFLATAHEVSHDLAPQFLEAGC--VVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLA  139 (337)
T ss_dssp             EESSGGGT---CTTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCT
T ss_pred             ccCCHHHH---hcCCCEEEECCChHHHHHHHHHHHHCCC--EEEEcCCccccCCcccchhhccccccChhhhcceEEEcc
Confidence            11 23333   2589999999999999999999999999  67888776    2  1               1468888 


Q ss_pred             --ChhccCCCCCeEEcCCcchhhhHhHHHHHHh--hcCeeEE-EEEEEeecCCccc-ccCCCCCccccCcccccceeeec
Q 022491          141 --NEKEYKPELDIVSNASCTTNCLAPLAKVIHD--KFGIVEG-LMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPS  214 (296)
Q Consensus       141 --n~~~l~~~~~iIs~p~C~~tal~~~l~~L~~--~~gi~~~-~~~~v~a~sg~~~-~~d~~~~~~~~~~r~~~~ni~P~  214 (296)
                        |+++|+ ++++||||||||||++++|+||++  .+++++. .++++|++||+|+ .++..+ .+.+       |++|+
T Consensus       140 Evn~~~i~-~~~iIanPgC~tt~~~l~L~PL~~~g~~~~~~i~~v~t~~g~SGaG~~~~~~~~-~~~~-------n~~py  210 (337)
T 3dr3_A          140 EWCGNKLK-EANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVINATSGVSGAGRKAAISNS-FCEV-------SLQPY  210 (337)
T ss_dssp             TTCCHHHH-TCSEEECCCHHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCSTTS-GGGC-------SEEEC
T ss_pred             ccCHHHhC-CCCEEecCChHHHHHHHHHHHHHHcCccCCCceEEEEEeeccccCCcccccccc-cccc-------ceEcc
Confidence              889998 689999999999999999999998  5888888 9999999999984 455333 2322       88998


Q ss_pred             cCChhhHHHHhccccCC----ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          215 STGAAKAVGKVLPALNG----KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       215 ~~g~~~~~~~~~pel~~----~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      ..+.    ++|+||+++    +++|+|+|||++|||+.++|++++++++.+|++++|+++|++
T Consensus       211 ~~~~----h~h~Pei~~~l~~~v~ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~l~~~Y~~  269 (337)
T 3dr3_A          211 GVFT----HRHQPEIATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQALQQAYAH  269 (337)
T ss_dssp             STTT----CTHHHHHHHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTT
T ss_pred             Cccc----ceechhHHhhhcCCEEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHHhCC
Confidence            8653    567777766    799999999999999999999999999999999999999976

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=100.00  E-value=1.4e-40  Score=308.75  Aligned_cols=234  Identities=17%  Similarity=0.230  Sum_probs=185.4

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      |++||||+|+ ||+|++|+|+|.+|  |.+++..+.+. ++.+.                         .+.+.++.+.+
T Consensus         1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~-~saG~-------------------------~~~~~~~~~~~   54 (366)
T 3pwk_A            1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGK-------------------------SLKFKDQDITI   54 (366)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECT-TTTTC-------------------------EEEETTEEEEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEcc-ccCCC-------------------------cceecCCCceE
Confidence            5689999999 99999999999997  88999999876 33321                         12222333333


Q ss_pred             EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCCCCeEEcCC
Q 022491           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPELDIVSNAS  156 (296)
Q Consensus        82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~~~iIs~p~  156 (296)
                       ...+++.  |  .++|+||+|+|++.+++.++.++++|+  +|||+|++     +.|.++||+|+++|+..+++|||||
T Consensus        55 -~~~~~~~--~--~~~Dvvf~a~~~~~s~~~a~~~~~~G~--~vIDlSa~~R~~~~~p~~vpevN~~~i~~~~~iIanpg  127 (366)
T 3pwk_A           55 -EETTETA--F--EGVDIALFSAGSSTSAKYAPYAVKAGV--VVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPN  127 (366)
T ss_dssp             -EECCTTT--T--TTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCHHHHGGGGTTCCSEEECCC
T ss_pred             -eeCCHHH--h--cCCCEEEECCChHhHHHHHHHHHHCCC--EEEEcCCccccCCCceEEEccCCHHHHcCCCCeEECCC
Confidence             2223333  3  489999999999999999999999999  68888875     4789999999999984489999999


Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCCCC---------------ccccCc-------ccccceeee
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSM---------------KDWRGG-------RAASFNIIP  213 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~~~---------------~~~~~~-------r~~~~ni~P  213 (296)
                      |||||++|+|+||++.|+|+++.++++|++||+|+ .++....               .....+       +.+++|++|
T Consensus       128 C~tt~~~l~l~pL~~~~~i~~i~v~t~~~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~HrH~~ia~NviP  207 (366)
T 3pwk_A          128 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALP  207 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBC
T ss_pred             cHHHHHHHHHHHHHHhCCCcEEEEEEEEeccccCcchhhHHHHHHHHHhcccccccccCcccCCcccccccchhhccccc
Confidence            99999999999999999999999999999999984 2220000               001122       678999999


Q ss_pred             cc-----CChhhHHHHhccc-------cCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          214 SS-----TGAAKAVGKVLPA-------LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       214 ~~-----~g~~~~~~~~~pe-------l~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                      ++     +|+++|+.|...|       ...+++|+|+|||++|||+.++|++++++++.+|++++|++++
T Consensus       208 ~I~~~~~~g~t~EE~k~~~E~~kil~~~~~~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~~~l~~~~  277 (366)
T 3pwk_A          208 QIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFP  277 (366)
T ss_dssp             CSSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHST
T ss_pred             eecccccCCCcHHHHHHHHHHHHHhcCCCCCeEEEEEEechhccEEEEEEEEECCCCCHHHHHHHHHhCC
Confidence            97     4777777654433       3346899999999999999999999999999999999999974

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=4.9e-41  Score=310.37  Aligned_cols=240  Identities=17%  Similarity=0.239  Sum_probs=180.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |+||||+|+|++|++++|+|.+||++|+++|++.  +.+..++++++. .++.+. +.    .-..+ +.+..+.+.  .
T Consensus         1 ~ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~--~~~~~~~~a~~~-g~~~~~-~~----~~~~~-~~~~~v~v~--~   69 (340)
T 1b7g_O            1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKT--SPNYEAFIAHRR-GIRIYV-PQ----QSIKK-FEESGIPVA--G   69 (340)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS--SCSHHHHHHHHT-TCCEEC-CG----GGHHH-HHTTTCCCC--C
T ss_pred             CeEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcC--ChHHHHHHHHhc-Ccceec-Cc----CHHHH-hcccccccc--c
Confidence            3899999999999999999999999999999987  344333443321 111111 00    00000 000000000  0


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCCCCCeEEcCCcchhhhH
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~  163 (296)
                      +++++   ..++|+||+|||++.+++.++.++++|+|+++++++..+  .+++++|+|.+++. +.++|+||||+|||++
T Consensus        70 ~~e~l---~~~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~-~~~iIsnpsCtt~~l~  145 (340)
T 1b7g_O           70 TVEDL---IKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEAL-GKKYIRVVSCNTTALL  145 (340)
T ss_dssp             CHHHH---HHHCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHT-TCSEEEECCHHHHHHH
T ss_pred             CHhHh---hcCCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHc-CCCCcccCCcHHHHHH
Confidence            11111   137999999999999999999999999954444333322  47999999977665 5679999999999999


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeec----cCChhhHHHHhccccCCceeEEEEE
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS----STGAAKAVGKVLPALNGKLTGMSFR  239 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~----~~g~~~~~~~~~pel~~~v~~~~~~  239 (296)
                      |+|+||++.|||+++.++|+|+++.       ++ .+   .|.+..|++|.    .+++.+++.+++|+++  ++++|+|
T Consensus       146 ~~lk~L~~~~gI~~~~~tt~~~~~~-------~~-~~---~~~~~~niip~~~~i~t~~a~ev~~vlp~l~--l~~~a~r  212 (340)
T 1b7g_O          146 RTICTVNKVSKVEKVRATIVRRAAD-------QK-EV---KKGPINSLVPDPATVPSHHAKDVNSVIRNLD--IATMAVI  212 (340)
T ss_dssp             HHHHHHHTTSCEEEEEEEEEEESSC-------TT-CC---SCCCSSCCEESSSSSSCTHHHHHHTTSTTCE--EEEEEEE
T ss_pred             HHHHHHHHhCCeEEEEEEEEeccCC-------cc-cc---hHHHHcCCCCCCcCCCCCchhHHHHhCCCCc--EEEEEEE
Confidence            9999999999999999999997652       22 22   35667789987    5678899999999986  9999999


Q ss_pred             eeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       240 VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      ||+++||+.+++++++++++.|||+++|++++.-
T Consensus       213 VPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~v  246 (340)
T 1b7g_O          213 APTTLMHMHFINITLKDKVEKKDILSVLENTPRI  246 (340)
T ss_dssp             ESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTTE
T ss_pred             eccCCeEEEEEEEEECCCCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999988763

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=100.00  E-value=6.4e-40  Score=302.22  Aligned_cols=232  Identities=20%  Similarity=0.298  Sum_probs=182.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||||+|+ ||+|++|+|+|.+|  |.+|++.+.+. ++.+.                         .+.+.++.+.+. 
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~-~~aG~-------------------------~~~~~~~~~~~~-   54 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASA-RSQGR-------------------------KLAFRGQEIEVE-   54 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECT-TTSSC-------------------------EEEETTEEEEEE-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECc-ccCCC-------------------------ceeecCCceEEE-
Confidence            79999999 99999999999998  88999999876 33321                         122223333332 


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccCh-hccCCC-CCeEEcCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNE-KEYKPE-LDIVSNAS  156 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~-~~l~~~-~~iIs~p~  156 (296)
                      ..+++.  |  .++|+||+|+|++.++++++.++++|+  +|||+|++     +.|.++|++|+ +.|+.. .++|||||
T Consensus        55 ~~~~~~--~--~~~Dvvf~a~~~~~s~~~a~~~~~~G~--~vID~Sa~~R~~~~~p~~vpevN~~~~i~~~~~~iIanpg  128 (344)
T 3tz6_A           55 DAETAD--P--SGLDIALFSAGSAMSKVQAPRFAAAGV--TVIDNSSAWRKDPDVPLVVSEVNFERDAHRRPKGIIANPN  128 (344)
T ss_dssp             ETTTSC--C--TTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCTTTSHHHHTTCCTTSEEECCC
T ss_pred             eCCHHH--h--ccCCEEEECCChHHHHHHHHHHHhCCC--EEEECCCccccCCCccEEEccCCCHHHhhhcCCCEEECCC
Confidence            223333  3  589999999999999999999999999  78998875     47899999999 999732 58999999


Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc-cCCC----------------CC------ccccCcccccceeee
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VDGP----------------SM------KDWRGGRAASFNIIP  213 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~-~d~~----------------~~------~~~~~~r~~~~ni~P  213 (296)
                      |||||++|+|+||++.|+|+++.++++|++||+|+. ++..                .+      ....+++..++|++|
T Consensus       129 C~tt~~~l~l~pL~~~~~i~~i~v~t~~~~SGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aynv~p  208 (344)
T 3tz6_A          129 CTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDGGALEFPPPNTYVAPIAFNVVP  208 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHGGGGGGGGTCTTSSCCCCCSSSSSCCTTCCBC
T ss_pred             cHHHHHHHHHHHHHHhCCCceEEEEeccCCCccChhhhHHHHHHHHhhhccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999842 2110                01      012456678899999


Q ss_pred             cc-------CChhhHHHHhcccc-------CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhh
Q 022491          214 SS-------TGAAKAVGKVLPAL-------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (296)
Q Consensus       214 ~~-------~g~~~~~~~~~pel-------~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~  271 (296)
                      +.       +.|++|+.++.-|+       .-+++|+|+|||++|||+.++|++++++++.+|++++|+++.
T Consensus       209 ~i~~~~~~ghrHt~EE~k~~~e~~kilg~~~~~v~ft~vrvPv~rGh~~tv~v~l~~~~s~eei~~~l~~~p  280 (344)
T 3tz6_A          209 LAGSLVDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDGAT  280 (344)
T ss_dssp             CCSCBCSSSSCCBHHHHHHHHHHHHHHTCTTCEEEEECCBCSCSSCEEEEEEEEESSCCCHHHHHHHHHHCT
T ss_pred             cccccccCCCcCCHHHHHHHHHHHHhcCCCCCceEEEEEEeceeceEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence            85       24477744332221       235899999999999999999999999999999999999654

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=100.00  E-value=4.9e-41  Score=311.98  Aligned_cols=234  Identities=18%  Similarity=0.183  Sum_probs=180.5

Q ss_pred             eEEEEEec-CHHHHHHHH-HHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF-GRIGRLVAR-VALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r-~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |||||+|+ ||+|++|+| +|.+||  .++++.++++ + .+.     ++.+    |. +.       .+       .+.
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~-aG~-----~~~~----~~-~~-------~~-------~~~   54 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS-Q-IGV-----PAPN----FG-KD-------AG-------MLH   54 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS-S-TTS-----BCCC----SS-SC-------CC-------BCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEecc-c-cCc-----CHHH----hC-CC-------ce-------EEE
Confidence            58999999 999999999 999999  6899998776 3 321     1111    22 10       01       111


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC----CCCeEE
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP----ELDIVS  153 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~----~~~iIs  153 (296)
                      ...+++.  |  .++|+||+|+|++.++++++.++++|+|++|||+|++     +.|.++||+|+++++.    +.++||
T Consensus        55 ~~~~~~~--~--~~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ia  130 (370)
T 3pzr_A           55 DAFDIES--L--KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFV  130 (370)
T ss_dssp             ETTCHHH--H--TTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             ecCChhH--h--ccCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhhcCCcEEE
Confidence            1111222  2  5899999999999999999999999998899999986     3688999999998862    125699


Q ss_pred             cCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccccc-CC------------------C------------------
Q 022491          154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV-DG------------------P------------------  196 (296)
Q Consensus       154 ~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~-d~------------------~------------------  196 (296)
                      ||||||||++|+|+||++.|+|+++.++|+|++||+|+.. +.                  +                  
T Consensus       131 np~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~~~~~~~~~l~~p~~~ild~~~~~~~~~~~~  210 (370)
T 3pzr_A          131 GGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSG  210 (370)
T ss_dssp             ECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHST
T ss_pred             cCChHHHHHHHHHHHHHHhCCCcEEEEEeEEeccccChhhHHHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999998421 10                  0                  


Q ss_pred             CCccccCcccccceeeecc-----CChhhHHH-------Hhccc--cCCceeEEEEEeeeCceEEEEEEEEeecCCCHHH
Q 022491          197 SMKDWRGGRAASFNIIPSS-----TGAAKAVG-------KVLPA--LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEE  262 (296)
Q Consensus       197 ~~~~~~~~r~~~~ni~P~~-----~g~~~~~~-------~~~pe--l~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~e  262 (296)
                      ......+++.+++|++|+.     +|+.+|+.       ++++.  -.-+++|+|+|||++|||+.++|++++++++.+|
T Consensus       211 ~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~i~V~~t~vrVPv~rGh~~tv~v~~~~~~~~~e  290 (370)
T 3pzr_A          211 SFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDE  290 (370)
T ss_dssp             TSCCTTTSSCCTTSEESCCSCBCTTSCBHHHHHHHHHHHHHTTCTTSCCCEECCCCEESCSSEEEEEEEEEESSCCCHHH
T ss_pred             ccccccccccccCceeeeccccccCCCCHHHHHHHHHHHHHhCccCCCceEEEEeEEecccceEEEEEEEEeCCCCCHHH
Confidence            0012345677899999997     35566644       34432  1235899999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 022491          263 IKNAIKEE  270 (296)
Q Consensus       263 v~~~~~~~  270 (296)
                      ++++|+++
T Consensus       291 i~~~l~~~  298 (370)
T 3pzr_A          291 IEEMIATH  298 (370)
T ss_dssp             HHHHHHTS
T ss_pred             HHHHHHhC
Confidence            99999987

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=100.00  E-value=5.1e-41  Score=312.58  Aligned_cols=235  Identities=16%  Similarity=0.195  Sum_probs=181.8

Q ss_pred             eeEEEEEec-CHHHHHHHH-HHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            6 KIKIGINGF-GRIGRLVAR-VALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r-~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      ++||||+|+ ||+|++|+| +|.+||  .++++.++++ +..+.      +.+    |. +.       .+       .+
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~------~~~----~~-~~-------~~-------~v   57 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGK------APS----FA-KN-------ET-------TL   57 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSB------CCT----TC-CS-------CC-------BC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCC------HHH----cC-CC-------ce-------EE
Confidence            479999999 999999999 999999  6899888765 32221      111    22 10       01       11


Q ss_pred             EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCC--C--CeE
Q 022491           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--L--DIV  152 (296)
Q Consensus        82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~--~--~iI  152 (296)
                      ....+++.  |  .++|+||+|+|++.++++++.++++|+|++|||+|++     +.|.++||+|+++++..  .  ++|
T Consensus        58 ~~~~~~~~--~--~~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~I  133 (377)
T 3uw3_A           58 KDATSIDD--L--KKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNF  133 (377)
T ss_dssp             EETTCHHH--H--HTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEE
T ss_pred             EeCCChhH--h--cCCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhhcCCcEE
Confidence            11111222  2  4899999999999999999999999998899999986     36889999999988631  2  459


Q ss_pred             EcCCcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccc-cC------------------CCC----------------
Q 022491          153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-VD------------------GPS----------------  197 (296)
Q Consensus       153 s~p~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~-~d------------------~~~----------------  197 (296)
                      |||||||||++|+|+||++.|+|+++.++|+|++||+|+. ++                  .++                
T Consensus       134 anp~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~l~~~~~~~~~~p~~~ild~~~~~~~~~~~  213 (377)
T 3uw3_A          134 IGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPASAILDIDRRVLAAMNG  213 (377)
T ss_dssp             EECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHTTHHHHTCTTSCHHHHHHHHHHHHHS
T ss_pred             EcCCHHHHHHHHHHHHHHHhCCCCEEEEeeeecccccchhhHHHHHHHHHHhhccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999842 11                  010                


Q ss_pred             --CccccCcccccceeeecc-----CChhhHHH-------Hhcccc------CCceeEEEEEeeeCceEEEEEEEEeecC
Q 022491          198 --MKDWRGGRAASFNIIPSS-----TGAAKAVG-------KVLPAL------NGKLTGMSFRVPTVDVSVVDLTVRLEKE  257 (296)
Q Consensus       198 --~~~~~~~r~~~~ni~P~~-----~g~~~~~~-------~~~pel------~~~v~~~~~~VP~~~g~~~~~~~~l~~~  257 (296)
                        .....+++.+++|++|+.     +|+++|+.       +++...      .-+++++|+|||++|||+.++|++++++
T Consensus       214 ~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t~vrVPv~rGh~~tv~v~~~~~  293 (377)
T 3uw3_A          214 DAMPTSQFGVPLAGSLIPWIDKDLGNGMSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKD  293 (377)
T ss_dssp             TTSCCTTTSSCCTBSCBSCCSCBCSSSCBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEECCBCSBSSEEEEEEEEEESSC
T ss_pred             cccccccccccccCceEEeecccccCCCCHHHHHHHHHHHHHhcccccccCCCceEEEEeEEecccceEEEEEEEEeCCC
Confidence              012345677899999996     46666644       444432      2358999999999999999999999999


Q ss_pred             CCHHHHHHHHHHh
Q 022491          258 ATYEEIKNAIKEE  270 (296)
Q Consensus       258 ~~~~ev~~~~~~~  270 (296)
                      ++.+|++++|+++
T Consensus       294 ~~~eei~~~l~~~  306 (377)
T 3uw3_A          294 VPLDEINGILASA  306 (377)
T ss_dssp             CCHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHhC
Confidence            9999999999987

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=4.4e-40  Score=303.72  Aligned_cols=237  Identities=23%  Similarity=0.304  Sum_probs=195.8

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccccc--ccCCCCcCccee-eeCCceeEECCEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNELK-VKDEKTLLFGEKPVAV   81 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~--s~~~~~~~~~v~-~~~~~~l~~~~~~i~~   81 (296)
                      ||+||||+|+|++|++++|+|.+||++++++|+++  +.+.++++++++  ++|++|+ +.+. ..++ .+.+       
T Consensus         1 M~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~--~~~~~~~~~~~~g~~~~~~~~-~~v~~~~~~-~~~v-------   69 (334)
T 2czc_A            1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKT--KPDFEAYRAKELGIPVYAASE-EFIPRFEKE-GFEV-------   69 (334)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEES--SCSHHHHHHHHTTCCEEESSG-GGHHHHHHH-TCCC-------
T ss_pred             CCcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcC--CHHHHHHHHHhcCcccccccc-ccceeccCC-ceEE-------
Confidence            45899999999999999999999999999999987  344555566555  6788776 3320 0000 0111       


Q ss_pred             EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-C-C-CeEEcccChhccCCCCCeEEcCCcc
Q 022491           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-A-PMFVVGVNEKEYKPELDIVSNASCT  158 (296)
Q Consensus        82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d-~-~~~v~gvn~~~l~~~~~iIs~p~C~  158 (296)
                      .  .+++++.   .++|+||+|||++.+.+.++.++++|+ +|+++.+.+ | . +++|||+|.++++ +.++|+||+|+
T Consensus        70 ~--~d~~~l~---~~vDvV~~aTp~~~h~~~a~~~l~aGk-~Vi~sap~~~d~~~~~~v~~vn~~~~~-~~~ii~~~~C~  142 (334)
T 2czc_A           70 A--GTLNDLL---EKVDIIVDATPGGIGAKNKPLYEKAGV-KAIFQGGEKADVAEVSFVAQANYEAAL-GKNYVRVVSCN  142 (334)
T ss_dssp             S--CBHHHHH---TTCSEEEECCSTTHHHHHHHHHHHHTC-EEEECTTSCGGGSSEEECHHHHGGGGT-TCSEEEECCHH
T ss_pred             c--CcHHHhc---cCCCEEEECCCccccHHHHHHHHHcCC-ceEeecccccccccceEEeccCHHHHh-hCCcEEecCcH
Confidence            1  1344442   389999999999999999999999995 477777665 3 3 5999999999998 57899999999


Q ss_pred             hhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeec---cCChhhHHHHhccccCCceeE
Q 022491          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS---STGAAKAVGKVLPALNGKLTG  235 (296)
Q Consensus       159 ~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~---~~g~~~~~~~~~pel~~~v~~  235 (296)
                      |++++|++++|++.  |+++.++++|++|+.           |+++|.+++|++|+   .+|+.+++.+++| ++  +++
T Consensus       143 t~~l~P~~~~l~~~--I~~g~i~ti~a~s~~-----------~~~~r~~~~niiP~i~~~~g~~~~i~~~l~-l~--l~~  206 (334)
T 2czc_A          143 TTGLVRTLSAIREY--ADYVYAVMIRRAADP-----------NDTKRGPINAIKPTVEVPSHHGPDVQTVIP-IN--IET  206 (334)
T ss_dssp             HHHHHHHHHHHGGG--EEEEEEEEEEESSCT-----------TCCSCCCSSCCEECCSSSCTHHHHHTTTSC-CC--EEE
T ss_pred             HHHHHHHHHHHHHH--hccccEEEEEEecCc-----------cccccChhhcEEeccCCCCchhhhhheEEE-EE--EEE
Confidence            99999999999886  999999999999974           34678899999999   7889999999999 76  999


Q ss_pred             EEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcC
Q 022491          236 MSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL  275 (296)
Q Consensus       236 ~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~  275 (296)
                      +++|||+++||+.+++++++++++.||++++|+++++..+
T Consensus       207 ~~~rVPv~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~l  246 (334)
T 2czc_A          207 MAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLL  246 (334)
T ss_dssp             EEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTTEEE
T ss_pred             EEEEcCCCceEEEEEEEEECCCCCHHHHHHHHHhccCCEe
Confidence            9999999999999999999999999999999999987543

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=100.00  E-value=2.6e-39  Score=299.52  Aligned_cols=235  Identities=12%  Similarity=0.090  Sum_probs=184.7

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCC-----CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p-----~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i   79 (296)
                      |+||+|+|+ |++|++++|+|.+||     ++|+++++++ ++.+.     .+++.|++|. +..      .+.      
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~-~~agk-----~~~~~~~~l~-~~~------~~~------   69 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAA-TSAGS-----TLGEHHPHLT-PLA------HRV------   69 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEES-SCTTS-----BGGGTCTTCG-GGT------TCB------
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECC-CcCCC-----chhhhccccc-ccc------eee------
Confidence            489999998 999999999999999     9999999876 34431     2477888876 210      011      


Q ss_pred             EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC---CCCe-------------EEccc---
Q 022491           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPM-------------FVVGV---  140 (296)
Q Consensus        80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~---d~~~-------------~v~gv---  140 (296)
                       + ...+++  .|  .++|+||+|+|++.+++.++.+ ++|+  ++||++++   +.+.             ++||+   
T Consensus        70 -~-~~~~~~--~~--~~~DvVf~alg~~~s~~~~~~~-~~G~--~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv  140 (352)
T 2nqt_A           70 -V-EPTEAA--VL--GGHDAVFLALPHGHSAVLAQQL-SPET--LIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPEL  140 (352)
T ss_dssp             -C-EECCHH--HH--TTCSEEEECCTTSCCHHHHHHS-CTTS--EEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTS
T ss_pred             -e-ccCCHH--Hh--cCCCEEEECCCCcchHHHHHHH-hCCC--EEEEECCCccCCcchhhhhhccccCCCCeeEEeccc
Confidence             1 111222  24  3899999999999999999999 9998  57777765   2223             47777   


Q ss_pred             --ChhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee-EEEEEEEeecCCccc-ccCCCCCccccCcccccceeeeccC
Q 022491          141 --NEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV-EGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSST  216 (296)
Q Consensus       141 --n~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~-~~~~~~v~a~sg~~~-~~d~~~~~~~~~~r~~~~ni~P~~~  216 (296)
                        |+++|+ ++++|||||||||+++++|+||++.++|+ +..++++|++||+|+ .++..+ .+++.++..++|++|. +
T Consensus       141 ~~n~~~i~-~~~iIanPgC~tt~~~lal~PL~~~~~i~~~i~v~t~~g~SGaG~~~~~~~~-~~~~~~~~~ay~~~~~-h  217 (352)
T 2nqt_A          141 PGARDQLR-GTRRIAVPGCYPTAALLALFPALAADLIEPAVTVVAVSGTSGAGRAATTDLL-GAEVIGSARAYNIAGV-H  217 (352)
T ss_dssp             TTHHHHHT-TCSEEECCCHHHHHHHHHHHHHHHTTCSCSEEEEEEEECGGGGCSSCCGGGS-HHHHTTCCEECSTTTT-S
T ss_pred             ccCHHHHh-cCCEEEcCCHHHHHHHHHHHHHHHcCCCcceEEEEEEeccccCCcccccccc-HHHHhhhcccccCCCc-c
Confidence              889998 78999999999999999999999999998 899999999999964 444333 4566677777887762 4


Q ss_pred             ChhhHHHHhcccc---CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          217 GAAKAVGKVLPAL---NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       217 g~~~~~~~~~pel---~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      .|.+|+.+.+..+   +.+++|+|+|||++|||++++|++++++  .+|++++|+++|++
T Consensus       218 ~h~pEi~~e~~ki~~~~~~v~ft~~rvP~~rG~~~ti~~~l~~~--~~ei~~~~~~~y~~  275 (352)
T 2nqt_A          218 RHTPEIAQGLRAVTDRDVSVSFTPVLIPASRGILATCTARTRSP--LSQLRAAYEKAYHA  275 (352)
T ss_dssp             TTHHHHHHHHHTTCSSCCEEEEEEEECSCSSCEEEEEEEECCSC--HHHHHHHHHHHHTT
T ss_pred             eecHHHHHHHHHHhCCCCCEEEEEEEEccccEEEEEEEEEECCC--HHHHHHHHHHhhCC
Confidence            5666665443333   3479999999999999999999999887  99999999999975

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=2.2e-39  Score=298.77  Aligned_cols=229  Identities=14%  Similarity=0.145  Sum_probs=179.5

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||||||+|+ ||+|++++|+|.+||++||+.+++. ++.+.     ++++.||+|. ..        +.        +..
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~-~~aG~-----~~~~~~p~~~-~~--------l~--------~~~   69 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR-TYAGK-----KLEEIFPSTL-EN--------SI--------LSE   69 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS-TTTTS-----BHHHHCGGGC-CC--------CB--------CBC
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCc-ccccC-----ChHHhChhhc-cC--------ce--------EEe
Confidence            499999999 9999999999999999999999986 45442     4577788764 11        21        111


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC---CC--------------CeE---Eccc---C
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DA--------------PMF---VVGV---N  141 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~---d~--------------~~~---v~gv---n  141 (296)
                      .+++++ |  .++|+||+|+|++.++++++.+  +|+  +|||+|++   +.              |.+   +||+   |
T Consensus        70 ~~~~~~-~--~~~Dvvf~alp~~~s~~~~~~~--~g~--~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n  142 (351)
T 1vkn_A           70 FDPEKV-S--KNCDVLFTALPAGASYDLVREL--KGV--KIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELH  142 (351)
T ss_dssp             CCHHHH-H--HHCSEEEECCSTTHHHHHHTTC--CSC--EEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHH
T ss_pred             CCHHHh-h--cCCCEEEECCCcHHHHHHHHHh--CCC--EEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccC
Confidence            123322 2  4799999999999999999988  888  79999987   22              333   7777   6


Q ss_pred             hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee--EEEEEEEeecCCcccc-cCCCCCccccCcccccceeeecc---
Q 022491          142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSMKDWRGGRAASFNIIPSS---  215 (296)
Q Consensus       142 ~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~--~~~~~~v~a~sg~~~~-~d~~~~~~~~~~r~~~~ni~P~~---  215 (296)
                      +++|+ ++++|+|||||+|+++++|+||++.++|+  +..+++++++||+|+. .+..+ ..     ....|++|+.   
T Consensus       143 ~e~i~-~a~iIANPgC~~t~~~laL~PL~~~~~i~~~~iiv~t~sgvSGAG~~~~~~~~-~~-----e~~~n~~~y~~~~  215 (351)
T 1vkn_A          143 REEIK-NAQVVGNPGCYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYL-FS-----EVNESLRPYNVAK  215 (351)
T ss_dssp             HHHHT-TCSEEECCCHHHHHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGGB-HH-----HHTTCCEECSCSC
T ss_pred             HHHhc-cCCEEeCCChHHHHHHHHHHHHHHcCCCCCCEEEEEEEeeccccCcccccccc-hh-----HHhcccccCCccc
Confidence            88898 68999999999999999999999999998  8999999999999863 33221 11     2234555655   


Q ss_pred             CChhhHHHHhccccC---CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          216 TGAAKAVGKVLPALN---GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       216 ~g~~~~~~~~~pel~---~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      +.|.+|+.+.+..+.   .+++|+|+|||++|||++++|++++  ++.+|++++|+++|++
T Consensus       216 h~h~pEi~~el~~i~~~~~~v~ftp~rvPv~rG~~~tv~v~l~--~~~eei~~~l~~~Y~~  274 (351)
T 1vkn_A          216 HRHVPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFYKN  274 (351)
T ss_dssp             CTHHHHHHHHHHHHHTSCCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHhhCCCCCEEEEEEEeccccEEEEEEEEEEc--CCHHHHHHHHHHhhCC
Confidence            456677665554332   3599999999999999999999998  8999999999999975

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=99.37  E-value=7.1e-13  Score=120.63  Aligned_cols=212  Identities=17%  Similarity=0.191  Sum_probs=124.3

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecCCCCh--hhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFIST--DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~~~~~--~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      |++  ++||||+|+|++|+.+++.+.+ +|.++++++.++..+.  ..++      ..++.    .              
T Consensus         1 M~~--~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a------~~~g~----~--------------   54 (312)
T 1nvm_B            1 MNQ--KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA------QRMGV----T--------------   54 (312)
T ss_dssp             CCS--CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH------HHTTC----C--------------
T ss_pred             CCC--CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHH------HHcCC----C--------------
Confidence            553  3899999999999999999976 9999999999873221  1111      11110    0              


Q ss_pred             EEEEEecCCCCCC----CcccCCCcEEEEccCCccCHHHHHHHHHC--CCCeEEeeCCCCC-CCeEEcccChhccCC--C
Q 022491           78 PVAVFGFRNPEEI----PWAKTGAEYVVESTGVFTDKDKAAAHLKG--GAKKVVISAPSKD-APMFVVGVNEKEYKP--E  148 (296)
Q Consensus        78 ~i~~~~~~d~~~i----~~~~~~~DvV~~at~~~~~~~~~~~~l~~--G~k~vvid~~~~d-~~~~v~gvn~~~l~~--~  148 (296)
                         .+. .+.+++    +|  .++|+||+|||+..+.+++..++++  |.  .|++....- .|..++.+|.+++..  +
T Consensus        55 ---~~~-~~~e~ll~~~~~--~~iDvV~~atp~~~h~~~a~~al~a~~Gk--~Vi~ekp~~~g~~~~p~v~~~~~~~~~~  126 (312)
T 1nvm_B           55 ---TTY-AGVEGLIKLPEF--ADIDFVFDATSASAHVQNEALLRQAKPGI--RLIDLTPAAIGPYCVPVVNLEEHLGKLN  126 (312)
T ss_dssp             ---EES-SHHHHHHHSGGG--GGEEEEEECSCHHHHHHHHHHHHHHCTTC--EEEECSTTCSSCBCCHHHHTTTTTTCSE
T ss_pred             ---ccc-CCHHHHHhccCC--CCCcEEEECCChHHHHHHHHHHHHhCCCC--EEEEcCcccccccccCccCHHHHHhccC
Confidence               000 011111    11  4789999999999999999999999  98  677755432 333333445455431  2


Q ss_pred             CCeEEcCCcchhhhHhHHHHHHhhcCeeEE-EEEEEeecCCcccccCCCCCccccCcccccc--eeeeccCChhhHHHHh
Q 022491          149 LDIVSNASCTTNCLAPLAKVIHDKFGIVEG-LMTTVHSITATQKTVDGPSMKDWRGGRAASF--NIIPSSTGAAKAVGKV  225 (296)
Q Consensus       149 ~~iIs~p~C~~tal~~~l~~L~~~~gi~~~-~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~--ni~P~~~g~~~~~~~~  225 (296)
                      .+++++|+|.   ..|++..+.+.+..... .+.++.+.+               .|+....  +-++..++  +.+ +.
T Consensus       127 ~~lva~~g~~---~ipl~~a~~~~~~~~~~~iv~~i~sgs---------------~G~~~~~~l~e~~~~~~--~ai-~~  185 (312)
T 1nvm_B          127 VNMVTCGGQA---TIPMVAAVSRVAKVHYAEIVASISSKS---------------AGPGTRANIDEFTETTS--KAI-EV  185 (312)
T ss_dssp             EECCCHHHHH---HHHHHHHHHTTSCEEEEEEEEEEEGGG---------------SCHHHHTCHHHHHHHHH--HHH-HH
T ss_pred             CcEEEeCCcc---cchHHHHhhhhccchhHhHhhhhhccc---------------cCCCcccchhhHHHHHH--HHH-HH
Confidence            3578777775   45666666666554322 223332222               1111111  11111111  122 22


Q ss_pred             ccccC-C--ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHh
Q 022491          226 LPALN-G--KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE  270 (296)
Q Consensus       226 ~pel~-~--~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~  270 (296)
                      +.... +  .+.++++..|++  +..++|+.++ ..+.+++.+.-.+.
T Consensus       186 ~gg~~~~k~il~~~p~~~p~~--~~~tv~~~~~-~~~~~~~~~~~~~m  230 (312)
T 1nvm_B          186 IGGAAKGKAIIIMNPAEPPLI--MRDTVYVLSA-AADQAAVAASVAEM  230 (312)
T ss_dssp             TTCCSSEEEEEEEECCSSCCC--EEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred             hhhccCCCcEEEEecCCCCcc--cceeEEEEeC-CCCHHHHHHHHHHH
Confidence            22111 1  256888999998  8889999997 77777766655443

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.73  E-value=1.9e-08  Score=90.87  Aligned_cols=91  Identities=22%  Similarity=0.294  Sum_probs=61.9

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~   80 (296)
                      |+.++++||||+|+|.+|+.+++.|.++|+++++++.++  +.+..      .. ++              +.+     .
T Consensus         4 M~~M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~--~~~~~------~~-~g--------------~~~-----~   55 (304)
T 3bio_A            4 MTDDKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRR--NPAEV------PF-EL--------------QPF-----R   55 (304)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------------CC--------------TTS-----C
T ss_pred             CccCCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcC--CHHHH------HH-cC--------------CCc-----C
Confidence            443335899999999999999999999999999999987  33211      11 11              000     0


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid  127 (296)
                      .+.  +..+.    .++|+||.|||...+.+.+..++++|.  .|++
T Consensus        56 ~~~--~l~~~----~~~DvViiatp~~~h~~~~~~al~aG~--~Vi~   94 (304)
T 3bio_A           56 VVS--DIEQL----ESVDVALVCSPSREVERTALEILKKGI--CTAD   94 (304)
T ss_dssp             EES--SGGGS----SSCCEEEECSCHHHHHHHHHHHHTTTC--EEEE
T ss_pred             CHH--HHHhC----CCCCEEEECCCchhhHHHHHHHHHcCC--eEEE
Confidence            011  22222    479999999999999999999999997  4554

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.66  E-value=5e-08  Score=89.99  Aligned_cols=96  Identities=24%  Similarity=0.313  Sum_probs=69.0

Q ss_pred             CCCCCeeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i   79 (296)
                      |++. ++||||+|+|.+|+. +++.+.++|+++|++|.++  +.+..+.      .++    +                +
T Consensus         1 M~m~-~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~--~~~~~~~------~~~----~----------------~   51 (358)
T 3gdo_A            1 MSLD-TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTS--RTEEVKR------DFP----D----------------A   51 (358)
T ss_dssp             -CTT-CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECS--CHHHHHH------HCT----T----------------S
T ss_pred             CCCC-cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcC--CHHHHHh------hCC----C----------------C
Confidence            6632 489999999999996 8899999999999999987  3332211      111    0                0


Q ss_pred             EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      +.+.  |++++ ..+.++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        52 ~~~~--~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP   97 (358)
T 3gdo_A           52 EVVH--ELEEI-TNDPAIELVIVTTPSGLHYEHTMACIQAGK-HVVMEKP   97 (358)
T ss_dssp             EEES--STHHH-HTCTTCCEEEECSCTTTHHHHHHHHHHTTC-EEEEESS
T ss_pred             ceEC--CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHcCC-eEEEecC
Confidence            1222  44444 223579999999999999999999999995 5667655

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.64  E-value=4.9e-08  Score=89.69  Aligned_cols=96  Identities=19%  Similarity=0.282  Sum_probs=68.8

Q ss_pred             CeeEEEEEecCHHHH-HHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G~iG~-~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ||+||||+|+|.+|+ .+++.+.++|+++|++|.++. ..+..+.      .++..  +                ++.+.
T Consensus         1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~------~~~~~--~----------------~~~~~   55 (349)
T 3i23_A            1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAA------PFKEK--G----------------VNFTA   55 (349)
T ss_dssp             CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHH------HHHTT--T----------------CEEES
T ss_pred             CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHH------hhCCC--C----------------CeEEC
Confidence            569999999999998 688989999999999999983 2322221      11100  0                11222


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        +.+++ ....++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        56 --~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKP   97 (349)
T 3i23_A           56 --DLNEL-LTDPEIELITICTPAHTHYDLAKQAILAGK-SVIVEKP   97 (349)
T ss_dssp             --CTHHH-HSCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             --CHHHH-hcCCCCCEEEEeCCcHHHHHHHHHHHHcCC-EEEEECC
Confidence              45554 223579999999999999999999999994 5667554

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.64  E-value=2.7e-08  Score=91.22  Aligned_cols=96  Identities=24%  Similarity=0.358  Sum_probs=67.6

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||+||||+|+|.+|+.+++.|.++|++++++|.|+  +.+....   ....++              +      ...+. 
T Consensus         1 M~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~--~~~~~~~---~~~~~~--------------~------~~~~~-   54 (344)
T 3ezy_A            1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDV--REDRLRE---MKEKLG--------------V------EKAYK-   54 (344)
T ss_dssp             -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECS--CHHHHHH---HHHHHT--------------C------SEEES-
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECC--CHHHHHH---HHHHhC--------------C------CceeC-
Confidence            56899999999999999999999999999999987  3321111   111111              0      00111 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +.+++ ..+.++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        55 -~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~EKP   96 (344)
T 3ezy_A           55 -DPHEL-IEDPNVDAVLVCSSTNTHSELVIACAKAKK-HVFCEKP   96 (344)
T ss_dssp             -SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESC
T ss_pred             -CHHHH-hcCCCCCEEEEcCCCcchHHHHHHHHhcCC-eEEEECC
Confidence             33333 123479999999999999999999999995 5677655

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.63  E-value=2.9e-08  Score=90.98  Aligned_cols=95  Identities=18%  Similarity=0.192  Sum_probs=67.0

Q ss_pred             eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||||||+|+|.+|+. +++.+.++|+++|++|.|+  +.+.. ..  +...|+- +                   +++. 
T Consensus        23 mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~--~~~~a-~~--~a~~~g~-~-------------------~~y~-   76 (350)
T 4had_A           23 MLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASR--DLTRA-RE--MADRFSV-P-------------------HAFG-   76 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECS--SHHHH-HH--HHHHHTC-S-------------------EEES-
T ss_pred             ccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECC--CHHHH-HH--HHHHcCC-C-------------------eeeC-
Confidence            499999999999986 5788999999999999997  33211 11  1111210 0                   0121 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       |.+++ ..+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        77 -d~~el-l~~~~iDaV~I~tP~~~H~~~~~~al~aGk-hVl~EKP  118 (350)
T 4had_A           77 -SYEEM-LASDVIDAVYIPLPTSQHIEWSIKAADAGK-HVVCEKP  118 (350)
T ss_dssp             -SHHHH-HHCSSCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             -CHHHH-hcCCCCCEEEEeCCCchhHHHHHHHHhcCC-EEEEeCC
Confidence             34443 224579999999999999999999999995 4666544

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.60  E-value=5.8e-08  Score=88.40  Aligned_cols=94  Identities=26%  Similarity=0.329  Sum_probs=67.1

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||+||||+|+|.+|+.+++.|.++|++++++|.++  +.+....+   ...++              +       + +  
T Consensus         2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~--~~~~~~~~---~~~~~--------------~-------~-~--   52 (331)
T 4hkt_A            2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADA--FPAAAEAI---AGAYG--------------C-------E-V--   52 (331)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS--SHHHHHHH---HHHTT--------------C-------E-E--
T ss_pred             CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECC--CHHHHHHH---HHHhC--------------C-------C-c--
Confidence            56999999999999999999999999999999987  33211111   11110              1       1 1  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+++++ ..+.++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        53 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~EKP   95 (331)
T 4hkt_A           53 RTIDAI-EAAADIDAVVICTPTDTHADLIERFARAGK-AIFCEKP   95 (331)
T ss_dssp             CCHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             CCHHHH-hcCCCCCEEEEeCCchhHHHHHHHHHHcCC-cEEEecC
Confidence            133333 123479999999999999999999999994 5667655

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.60  E-value=5.1e-08  Score=90.18  Aligned_cols=94  Identities=20%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHc-------CCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491            6 KIKIGINGFGRIGRLVARVALQ-------RDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~-------~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      ++||||||+|++|+..++.+..       .|.++|++|+|+..+. +..+      ..|+.    .              
T Consensus        25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a------~~~g~----~--------------   80 (393)
T 4fb5_A           25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARA------GEFGF----E--------------   80 (393)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHH------HHHTC----S--------------
T ss_pred             CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHH------HHhCC----C--------------
Confidence            4899999999999998887654       5788999999973332 2111      11110    0              


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        +++.  |.+++ ..+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        81 --~~y~--d~~el-l~~~~iDaV~IatP~~~H~~~a~~al~aGk-hVl~EKP  126 (393)
T 4fb5_A           81 --KATA--DWRAL-IADPEVDVVSVTTPNQFHAEMAIAALEAGK-HVWCEKP  126 (393)
T ss_dssp             --EEES--CHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             --eecC--CHHHH-hcCCCCcEEEECCChHHHHHHHHHHHhcCC-eEEEccC
Confidence              0121  34443 224579999999999999999999999996 4666544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.59  E-value=4.4e-08  Score=89.32  Aligned_cols=98  Identities=16%  Similarity=0.123  Sum_probs=67.6

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i   79 (296)
                      |+. +++||||+|+|.+|+.+++.|.++|++++++|.++..+. +..      ...++.-.                   
T Consensus         1 M~m-~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~------~~~~~~~~-------------------   54 (330)
T 3e9m_A            1 MSL-DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKM------AKELAIPV-------------------   54 (330)
T ss_dssp             --C-CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHH------HHHTTCCC-------------------
T ss_pred             CCC-CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHH------HHHcCCCc-------------------
Confidence            663 358999999999999999999999999999999873221 111      11111000                   


Q ss_pred             EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       .+  .+.+++ ..+.++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        55 -~~--~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~vl~EKP   99 (330)
T 3e9m_A           55 -AY--GSYEEL-CKDETIDIIYIPTYNQGHYSAAKLALSQGK-PVLLEKP   99 (330)
T ss_dssp             -CB--SSHHHH-HHCTTCSEEEECCCGGGHHHHHHHHHHTTC-CEEECSS
T ss_pred             -ee--CCHHHH-hcCCCCCEEEEcCCCHHHHHHHHHHHHCCC-eEEEeCC
Confidence             01  123333 113479999999999999999999999995 4667554

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.58  E-value=7.6e-08  Score=89.03  Aligned_cols=97  Identities=22%  Similarity=0.306  Sum_probs=66.7

Q ss_pred             CCCCC-eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491            1 MAGDK-KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         1 m~~~m-~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      |+++| ++||||+|+|.+|+. +++.+.++|+++|++|.++  +.+...      ..++    +         .      
T Consensus         1 M~~~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~--~~~~~~------~~~~----~---------~------   53 (364)
T 3e82_A            1 MSLSNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASR--DEEKVK------RDLP----D---------V------   53 (364)
T ss_dssp             ------CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECS--CHHHHH------HHCT----T---------S------
T ss_pred             CCCCCCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcC--CHHHHH------hhCC----C---------C------
Confidence            55432 489999999999997 8899999999999999987  333211      1111    1         0      


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +++.  +.+++ ..+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        54 -~~~~--~~~~l-l~~~~~D~V~i~tp~~~H~~~~~~al~aGk-~Vl~EKP   99 (364)
T 3e82_A           54 -TVIA--SPEAA-VQHPDVDLVVIASPNATHAPLARLALNAGK-HVVVDKP   99 (364)
T ss_dssp             -EEES--CHHHH-HTCTTCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             -cEEC--CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-cEEEeCC
Confidence             1121  34443 223579999999999999999999999995 4666544

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=98.58  E-value=4.8e-08  Score=87.38  Aligned_cols=97  Identities=21%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +++||+|+|+ |++|+.+++.+.++|+++|+++.++..+. ....    |.  +.+. +. . ..|         ++++ 
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~-~~G~----d~--gel~-G~-~-~~g---------v~v~-   79 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSS-FVDK----DA--SILI-GS-D-FLG---------VRIT-   79 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCT-TTTS----BG--GGGT-TC-S-CCS---------CBCB-
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc-cccc----ch--HHhh-cc-C-cCC---------ceee-
Confidence            4599999996 99999999999999999999999873221 0000    10  0000 00 0 001         1122 


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                       .|++++   ..++|+|+++|+.....+.+..+++.|.. +|+
T Consensus        80 -~dl~~l---l~~aDVvIDFT~p~a~~~~~~~~l~~Gv~-vVi  117 (288)
T 3ijp_A           80 -DDPESA---FSNTEGILDFSQPQASVLYANYAAQKSLI-HII  117 (288)
T ss_dssp             -SCHHHH---TTSCSEEEECSCHHHHHHHHHHHHHHTCE-EEE
T ss_pred             -CCHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHcCCC-EEE
Confidence             244444   24799999999988888888999999984 444

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.58  E-value=1.1e-07  Score=87.31  Aligned_cols=92  Identities=23%  Similarity=0.371  Sum_probs=67.2

Q ss_pred             eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|+. +++.+.++|+++|++|.++  +.+...      ..++    +         .       +++. 
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~--~~~~~~------~~~~----~---------~-------~~~~-   57 (352)
T 3kux_A            7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSS--DASKVH------ADWP----A---------I-------PVVS-   57 (352)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECS--CHHHHH------TTCS----S---------C-------CEES-
T ss_pred             CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECC--CHHHHH------hhCC----C---------C-------ceEC-
Confidence            489999999999997 8999999999999999987  332211      1111    1         0       0121 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       |.+++ ....++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        58 -~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hV~~EKP   99 (352)
T 3kux_A           58 -DPQML-FNDPSIDLIVIPTPNDTHFPLAQSALAAGK-HVVVDKP   99 (352)
T ss_dssp             -CHHHH-HHCSSCCEEEECSCTTTHHHHHHHHHHTTC-EEEECSS
T ss_pred             -CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-cEEEECC
Confidence             34443 223579999999999999999999999994 5777655

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.57  E-value=6.3e-08  Score=88.33  Aligned_cols=96  Identities=20%  Similarity=0.209  Sum_probs=66.5

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCC--CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p--~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |++|+||+|+|.+|+.+++.|.+.|  ++++++|.++  +.+....   +...|+. +                   .++
T Consensus         1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~--~~~~a~~---~a~~~~~-~-------------------~~~   55 (334)
T 3ohs_X            1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAAR--DLSRAKE---FAQKHDI-P-------------------KAY   55 (334)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECS--SHHHHHH---HHHHHTC-S-------------------CEE
T ss_pred             CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcC--CHHHHHH---HHHHcCC-C-------------------ccc
Confidence            5699999999999999999999877  4799999987  3321111   1111110 0                   011


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .  +.+++ ..+.++|+|+.|||+..+.+.+.+++++|. .|++.-|
T Consensus        56 ~--~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~~Gk-hVl~EKP   98 (334)
T 3ohs_X           56 G--SYEEL-AKDPNVEVAYVGTQHPQHKAAVMLCLAAGK-AVLCEKP   98 (334)
T ss_dssp             S--SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             C--CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHhcCC-EEEEECC
Confidence            1  33333 123479999999999999999999999994 5777654

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.56  E-value=8.1e-08  Score=88.67  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=68.8

Q ss_pred             CCCCCeeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i   79 (296)
                      |++. ++||||+|+|.+|+. +++.+.++|+++|++|.++.  .+..      ...++    +                +
T Consensus         1 M~~~-~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~------~~~~~----~----------------~   51 (362)
T 3fhl_A            1 MSLE-IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERS--KELS------KERYP----Q----------------A   51 (362)
T ss_dssp             --CC-CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSS--CCGG------GTTCT----T----------------S
T ss_pred             CCCC-ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCC--HHHH------HHhCC----C----------------C
Confidence            6633 489999999999997 88999999999999999873  3211      11111    0                0


Q ss_pred             EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +++.  +.+++ ....++|+|+.|||...+.+.+..++++|. .|++.-|-
T Consensus        52 ~~~~--~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP~   98 (362)
T 3fhl_A           52 SIVR--SFKEL-TEDPEIDLIVVNTPDNTHYEYAGMALEAGK-NVVVEKPF   98 (362)
T ss_dssp             EEES--CSHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESSC
T ss_pred             ceEC--CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-eEEEecCC
Confidence            1222  44544 223579999999999999999999999995 57776553

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.56  E-value=9.5e-08  Score=87.49  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=68.2

Q ss_pred             CeeEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ||+||||+|+|.+|+.+++.+. ++|++++++|.++  +.+....   ....++.    .               ...+.
T Consensus         1 M~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~--~~~~~~~---~~~~~g~----~---------------~~~~~   56 (344)
T 3mz0_A            1 MSLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDV--NQEAAQK---VVEQYQL----N---------------ATVYP   56 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECS--SHHHHHH---HHHHTTC----C---------------CEEES
T ss_pred             CeEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcC--CHHHHHH---HHHHhCC----C---------------CeeeC
Confidence            5689999999999999999999 7899999999987  3321111   1111110    0               01121


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        +++++ ....++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        57 --~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~vl~EKP   98 (344)
T 3mz0_A           57 --NDDSL-LADENVDAVLVTSWGPAHESSVLKAIKAQK-YVFCEKP   98 (344)
T ss_dssp             --SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             --CHHHH-hcCCCCCEEEECCCchhHHHHHHHHHHCCC-cEEEcCC
Confidence              33443 123469999999999999999999999995 5677655

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.55  E-value=1.3e-07  Score=87.31  Aligned_cols=98  Identities=22%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             CCeeEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            4 DKKIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         4 ~m~i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      +|++||||+|+|.+|+.+++.|. .+|++++++|.|+..+. +..+      ..++              +     ....
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a------~~~g--------------~-----~~~~   75 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAAL------DKYA--------------I-----EAKD   75 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHH------HHHT--------------C-----CCEE
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHH------HHhC--------------C-----CCee
Confidence            35689999999999999999998 78999999999873332 1111      1111              0     0011


Q ss_pred             EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +.  +++++ ....++|+|+.|||...+.+.+..++++|. .|++.-|-
T Consensus        76 ~~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKPl  120 (357)
T 3ec7_A           76 YN--DYHDL-INDKDVEVVIITASNEAHADVAVAALNANK-YVFCEKPL  120 (357)
T ss_dssp             ES--SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESSS
T ss_pred             eC--CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-CEEeecCc
Confidence            21  33433 123479999999999999999999999994 57776553

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.55  E-value=1.4e-07  Score=86.39  Aligned_cols=97  Identities=24%  Similarity=0.386  Sum_probs=67.9

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~   80 (296)
                      |+.  |+||||+|+|.+|+.+++.|.++|+++++++.++  +.+....   ....++                     .+
T Consensus         1 M~~--~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~--~~~~~~~---~a~~~g---------------------~~   52 (344)
T 3euw_A            1 MSL--TLRIALFGAGRIGHVHAANIAANPDLELVVIADP--FIEGAQR---LAEANG---------------------AE   52 (344)
T ss_dssp             --C--CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS--SHHHHHH---HHHTTT---------------------CE
T ss_pred             CCC--ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECC--CHHHHHH---HHHHcC---------------------Cc
Confidence            553  3899999999999999999999999999999987  3321111   111111                     01


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+.  +++++ ..+.++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        53 ~~~--~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~EKP   97 (344)
T 3euw_A           53 AVA--SPDEV-FARDDIDGIVIGSPTSTHVDLITRAVERGI-PALCEKP   97 (344)
T ss_dssp             EES--SHHHH-TTCSCCCEEEECSCGGGHHHHHHHHHHTTC-CEEECSC
T ss_pred             eeC--CHHHH-hcCCCCCEEEEeCCchhhHHHHHHHHHcCC-cEEEECC
Confidence            121  33333 123479999999999999999999999995 4677655

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.53  E-value=8.6e-08  Score=87.31  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~   80 (296)
                      |++ .++||||+|+|.+|+.+++.|.++|++++++|.++..+..   .  .+...++              +    .  .
T Consensus         1 M~m-~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~---~--~~a~~~~--------------~----~--~   54 (329)
T 3evn_A            1 MSL-SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESA---Q--AFANKYH--------------L----P--K   54 (329)
T ss_dssp             -----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTT---C--C---CCC--------------C----S--C
T ss_pred             CCC-CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHH---H--HHHHHcC--------------C----C--c
Confidence            553 2489999999999999999999999999999998733210   0  1111111              0    0  0


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+.  +.+++ ..+.++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        55 ~~~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKP   99 (329)
T 3evn_A           55 AYD--KLEDM-LADESIDVIYVATINQDHYKVAKAALLAGK-HVLVEKP   99 (329)
T ss_dssp             EES--CHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             ccC--CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCCC-eEEEccC
Confidence            121  33443 123479999999999999999999999995 4667655

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.53  E-value=1.9e-07  Score=86.19  Aligned_cols=97  Identities=26%  Similarity=0.344  Sum_probs=67.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~   80 (296)
                      |++ .++||||+|+|.+|+.+++.|.++|++++++|.++  +.+.. ..   ...++              +       +
T Consensus         1 M~m-~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~--~~~~~-~~---a~~~g--------------~-------~   52 (359)
T 3e18_A            1 MSL-KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDI--LAEKR-EA---AAQKG--------------L-------K   52 (359)
T ss_dssp             --C-CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECS--SHHHH-HH---HHTTT--------------C-------C
T ss_pred             CCC-CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcC--CHHHH-HH---HHhcC--------------C-------c
Confidence            552 24899999999999999999999999999999987  33221 11   11111              0       0


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+  .+++++ ..+.++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        53 ~~--~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-hVl~EKP   97 (359)
T 3e18_A           53 IY--ESYEAV-LADEKVDAVLIATPNDSHKELAISALEAGK-HVVCEKP   97 (359)
T ss_dssp             BC--SCHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             ee--CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-CEEeeCC
Confidence            11  133333 223579999999999999999999999995 5667655

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.52  E-value=5.8e-08  Score=86.35  Aligned_cols=95  Identities=27%  Similarity=0.307  Sum_probs=63.7

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |+||+|+|+ |++|+.+++++.++|+++|+++.++..+. ....-  .....+ +.       .+         ++++  
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~-~~G~d--~gel~g-~~-------~g---------v~v~--   64 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP-QLGQD--AGAFLG-KQ-------TG---------VALT--   64 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT-TTTSB--TTTTTT-CC-------CS---------CBCB--
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc-ccccc--HHHHhC-CC-------CC---------ceec--
Confidence            389999997 99999999999999999999998873221 00000  001110 00       01         1111  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .|++++   ..++|+||++|+...+.+.+..+++.|.+ +|+
T Consensus        65 ~dl~~l---l~~~DVVIDfT~p~a~~~~~~~al~~G~~-vVi  102 (272)
T 4f3y_A           65 DDIERV---CAEADYLIDFTLPEGTLVHLDAALRHDVK-LVI  102 (272)
T ss_dssp             CCHHHH---HHHCSEEEECSCHHHHHHHHHHHHHHTCE-EEE
T ss_pred             CCHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHcCCC-EEE
Confidence            134443   24789999999998888999999999985 444

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.50  E-value=1.7e-07  Score=85.91  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=66.2

Q ss_pred             CeeEEEEEecCHHHHH-HHH-HHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRL-VAR-VALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~-l~r-~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      ||+||||+|+|.+|+. +++ ++..+|++++++|.++..+..   ..   ...+   . +                ++++
T Consensus         1 m~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~---~~---~~~~---~-~----------------~~~~   54 (345)
T 3f4l_A            1 MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE---EQ---APIY---S-H----------------IHFT   54 (345)
T ss_dssp             -CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG---GG---SGGG---T-T----------------CEEE
T ss_pred             CceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH---HH---HHhc---C-C----------------CceE
Confidence            5699999999999985 788 668889999999999733321   11   1111   1 0                1122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .  +++++ ....++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        55 ~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKP   97 (345)
T 3f4l_A           55 S--DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLVEKP   97 (345)
T ss_dssp             S--CTHHH-HTCTTEEEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             C--CHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHcCC-cEEEeCC
Confidence            2  45554 223479999999999999999999999995 4666544

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.48  E-value=1.5e-07  Score=86.57  Aligned_cols=94  Identities=21%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcC-CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|+.+++.+.++ |.++++++.++  +.+.....   ...++                     ++.+. 
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~--~~~~~~~~---~~~~~---------------------~~~~~-   65 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDI--DPAALKAA---VERTG---------------------ARGHA-   65 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECS--SHHHHHHH---HHHHC---------------------CEEES-
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcC--CHHHHHHH---HHHcC---------------------CceeC-
Confidence            58999999999999999999998 89999999987  33211110   11111                     11221 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +++++ ..+.++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        66 -~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~EKP  107 (354)
T 3q2i_A           66 -SLTDM-LAQTDADIVILTTPSGLHPTQSIECSEAGF-HVMTEKP  107 (354)
T ss_dssp             -CHHHH-HHHCCCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             -CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCCC-CEEEeCC
Confidence             34443 223489999999999999999999999995 5666544

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.48  E-value=4.9e-07  Score=82.18  Aligned_cols=87  Identities=20%  Similarity=0.237  Sum_probs=63.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|+|++|+.+++.+.++|+++++++.++.... .    +  .     +.                  +..+  .
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~----~--~-----~g------------------v~~~--~   50 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-D----T--K-----TP------------------VFDV--A   50 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-S----S--S-----SC------------------EEEG--G
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-h----h--c-----CC------------------Ccee--C
Confidence            48999999999999999999999999999999872121 1    1  0     11                  1111  1


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      |.+++   ..++|+||+|||...+.+.+..++++|. .++++.
T Consensus        51 d~~~l---l~~~DvViiatp~~~h~~~~~~al~aG~-~Vv~ek   89 (320)
T 1f06_A           51 DVDKH---ADDVDVLFLCMGSATDIPEQAPKFAQFA-CTVDTY   89 (320)
T ss_dssp             GGGGT---TTTCSEEEECSCTTTHHHHHHHHHTTTS-EEECCC
T ss_pred             CHHHH---hcCCCEEEEcCCcHHHHHHHHHHHHCCC-EEEECC
Confidence            34444   1479999999999988899999999997 344433

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.48  E-value=3e-07  Score=84.49  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++||||+|+|.+|+.+++.+.++|++++++|.++  +.+.....   ...++              +       +.+  
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~--~~~~~~~~---~~~~g--------------~-------~~~--   55 (354)
T 3db2_A            4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR--TEDKREKF---GKRYN--------------C-------AGD--   55 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECS--SHHHHHHH---HHHHT--------------C-------CCC--
T ss_pred             CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECC--CHHHHHHH---HHHcC--------------C-------CCc--
Confidence            34899999999999999999999999999999987  33211111   11111              0       001  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+++++ ..+.++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        56 ~~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~vl~EKP   98 (354)
T 3db2_A           56 ATMEAL-LAREDVEMVIITVPNDKHAEVIEQCARSGK-HIYVEKP   98 (354)
T ss_dssp             SSHHHH-HHCSSCCEEEECSCTTSHHHHHHHHHHTTC-EEEEESS
T ss_pred             CCHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcCC-EEEEccC
Confidence            123333 113579999999999999999999999995 4667655

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.47  E-value=1.9e-07  Score=85.38  Aligned_cols=99  Identities=17%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             CCCCC-eeEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491            1 MAGDK-KIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         1 m~~~m-~i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      |+.+| ++||||+|+|.+|+.+++.|. +++.+++++|.++  +.+....   ....++    ..               
T Consensus         2 m~~~~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~--~~~~~~~---~a~~~g----~~---------------   57 (346)
T 3cea_A            2 MVTTRKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACAL--DSNQLEW---AKNELG----VE---------------   57 (346)
T ss_dssp             ---CCCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECS--CHHHHHH---HHHTTC----CS---------------
T ss_pred             CCCCCCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecC--CHHHHHH---HHHHhC----CC---------------
Confidence            55443 489999999999999999998 8899999999987  3321111   111111    00               


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                       .++.  +.+++ ....++|+|+.|||...+.+.+..++++|. .+++.-
T Consensus        58 -~~~~--~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~G~-~v~~eK  102 (346)
T 3cea_A           58 -TTYT--NYKDM-IDTENIDAIFIVAPTPFHPEMTIYAMNAGL-NVFCEK  102 (346)
T ss_dssp             -EEES--CHHHH-HTTSCCSEEEECSCGGGHHHHHHHHHHTTC-EEEECS
T ss_pred             -cccC--CHHHH-hcCCCCCEEEEeCChHhHHHHHHHHHHCCC-EEEEcC
Confidence             0121  33332 112479999999999999999999999995 455643

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.45  E-value=2.9e-07  Score=84.92  Aligned_cols=95  Identities=19%  Similarity=0.227  Sum_probs=67.2

Q ss_pred             eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|+. +++.|.++|++++++|.|+  +.+....   ....++.-                    +++. 
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~--~~~~~~~---~a~~~~~~--------------------~~~~-   58 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDS--DLERARR---VHRFISDI--------------------PVLD-   58 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECS--SHHHHGG---GGGTSCSC--------------------CEES-
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcC--CHHHHHH---HHHhcCCC--------------------cccC-
Confidence            489999999999996 8999999999999999987  3321111   11212100                    0121 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +.+++ ....++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        59 -~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP  100 (359)
T 3m2t_A           59 -NVPAM-LNQVPLDAVVMAGPPQLHFEMGLLAMSKGV-NVFVEKP  100 (359)
T ss_dssp             -SHHHH-HHHSCCSEEEECSCHHHHHHHHHHHHHTTC-EEEECSC
T ss_pred             -CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEECC
Confidence             34443 223578999999999999999999999995 4666554

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.45  E-value=8.3e-08  Score=88.66  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCc-------EEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDV-------ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~-------elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      ++||||||+|.+|+.+++.+.++|.+       +|++|.|+  +.+....   ....|+. +                  
T Consensus         6 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~--~~~~a~~---~a~~~g~-~------------------   61 (390)
T 4h3v_A            6 NLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGR--DAEAVRA---AAGKLGW-S------------------   61 (390)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECS--SHHHHHH---HHHHHTC-S------------------
T ss_pred             cCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcC--CHHHHHH---HHHHcCC-C------------------
Confidence            48999999999999999999887654       99999987  3321111   1111110 0                  


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +++.  |.+++ +.+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        62 -~~~~--d~~~l-l~~~~iDaV~I~tP~~~H~~~~~~al~aGk-hVl~EKP  107 (390)
T 4h3v_A           62 -TTET--DWRTL-LERDDVQLVDVCTPGDSHAEIAIAALEAGK-HVLCEKP  107 (390)
T ss_dssp             -EEES--CHHHH-TTCTTCSEEEECSCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             -cccC--CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcCC-CceeecC
Confidence             0121  34443 224689999999999999999999999995 5667554

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.42  E-value=2.2e-07  Score=85.45  Aligned_cols=94  Identities=14%  Similarity=0.158  Sum_probs=66.9

Q ss_pred             eeEEEEEecCHHHH-HHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~-~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|+ .+++.|.++|++++++|.++  +.+....   +...++              +       +.+. 
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~--~~~~~~~---~a~~~g--------------~-------~~~~-   79 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASR--RWDRAKR---FTERFG--------------G-------EPVE-   79 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEES--SHHHHHH---HHHHHC--------------S-------EEEE-
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcC--CHHHHHH---HHHHcC--------------C-------CCcC-
Confidence            58999999999998 79999999999999999987  3321111   111111              1       1111 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +++++ ..+.++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        80 -~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKP  121 (350)
T 3rc1_A           80 -GYPAL-LERDDVDAVYVPLPAVLHAEWIDRALRAGK-HVLAEKP  121 (350)
T ss_dssp             -SHHHH-HTCTTCSEEEECCCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             -CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCCC-cEEEeCC
Confidence             34443 223579999999999999999999999995 4666654

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.39  E-value=3.6e-07  Score=82.26  Aligned_cols=93  Identities=18%  Similarity=0.233  Sum_probs=65.9

Q ss_pred             eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|+. +++.|.++|++++++|.++  +.+.... +  ...++              +       ..+  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~--~~~~~~~-~--a~~~~--------------~-------~~~--   57 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP--NKVKREK-I--CSDYR--------------I-------MPF--   57 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECS--CHHHHHH-H--HHHHT--------------C-------CBC--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECC--CHHHHHH-H--HHHcC--------------C-------CCc--
Confidence            589999999999996 9999999999999999987  3321111 1  11111              0       001  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      .+.+++   ..++|+|+.|||+..+.+.+..++++|. .+++.-|.
T Consensus        58 ~~~~~l---l~~~D~V~i~tp~~~h~~~~~~al~~gk-~vl~EKP~   99 (308)
T 3uuw_A           58 DSIESL---AKKCDCIFLHSSTETHYEIIKILLNLGV-HVYVDKPL   99 (308)
T ss_dssp             SCHHHH---HTTCSEEEECCCGGGHHHHHHHHHHTTC-EEEECSSS
T ss_pred             CCHHHH---HhcCCEEEEeCCcHhHHHHHHHHHHCCC-cEEEcCCC
Confidence            133443   1389999999999999999999999996 46665443

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.39  E-value=1.3e-07  Score=88.72  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC--------CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p--------~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      |+||||||+|.+|+.+++.+.+.|        ++||++|+|+  +.+....   +...|+.    .              
T Consensus        26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~--~~~~a~~---~a~~~~~----~--------------   82 (412)
T 4gqa_A           26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQ--DQAMAER---HAAKLGA----E--------------   82 (412)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECS--SHHHHHH---HHHHHTC----S--------------
T ss_pred             cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcC--CHHHHHH---HHHHcCC----C--------------
Confidence            599999999999999999887643        5899999997  3321111   1111210    0              


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                        +++.  |.+++ +.+.++|+|+.|||...+.+.+.+++++|. .|++.-|-
T Consensus        83 --~~y~--d~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP~  129 (412)
T 4gqa_A           83 --KAYG--DWREL-VNDPQVDVVDITSPNHLHYTMAMAAIAAGK-HVYCEKPL  129 (412)
T ss_dssp             --EEES--SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESCS
T ss_pred             --eEEC--CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC-CeEeecCC
Confidence              1222  34443 234589999999999999999999999995 56676553

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.39  E-value=3.9e-07  Score=83.12  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=65.2

Q ss_pred             eeEEEEEecCHHHH-HHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~-~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|+ .+++.+.++|++++++|.++..+.            +     +         +       +.+. 
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------------~-----g---------~-------~~~~-   70 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------------E-----G---------V-------NSYT-   70 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------------T-----T---------S-------EEES-
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------------c-----C---------C-------CccC-
Confidence            48999999999998 799999999999999999872210            0     0         0       1121 


Q ss_pred             CCCCCCCccc-CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAK-TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~-~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +.+++ ... .++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        71 -~~~~l-l~~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP  113 (330)
T 4ew6_A           71 -TIEAM-LDAEPSIDAVSLCMPPQYRYEAAYKALVAGK-HVFLEKP  113 (330)
T ss_dssp             -SHHHH-HHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-EEEECSS
T ss_pred             -CHHHH-HhCCCCCCEEEEeCCcHHHHHHHHHHHHcCC-cEEEeCC
Confidence             33333 222 479999999999999999999999994 5666544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.36  E-value=6.6e-07  Score=80.93  Aligned_cols=95  Identities=19%  Similarity=0.244  Sum_probs=65.0

Q ss_pred             CCCCCeeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      |++ .++||||+|+|.+|+. +++.|.++|+++++++.++..+. +.++      ..++              +      
T Consensus         1 m~m-~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~------~~~g--------------~------   53 (319)
T 1tlt_A            1 MSL-KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPIC------ESWR--------------I------   53 (319)
T ss_dssp             -----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHH------HHHT--------------C------
T ss_pred             CCC-CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHH------HHcC--------------C------
Confidence            553 2489999999999996 89999999999999999873332 1111      1111              0      


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +.+  .+.+++   ..++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        54 -~~~--~~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G~-~v~~eKP   97 (319)
T 1tlt_A           54 -PYA--DSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGV-HVCVDKP   97 (319)
T ss_dssp             -CBC--SSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTC-EEEEESS
T ss_pred             -Ccc--CcHHHh---hcCCCEEEEeCCchhHHHHHHHHHHcCC-eEEEeCC
Confidence             001  123333   2579999999999999999999999996 4666644

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.34  E-value=3e-07  Score=85.65  Aligned_cols=95  Identities=22%  Similarity=0.344  Sum_probs=67.9

Q ss_pred             CeeEEEEEecC-HHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGFG-RIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G-~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |++||||+|+| .+|..+++.|.++|++++++|.++  +.+....   ....|+              +       +.+.
T Consensus         1 ~~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~--~~~~~~~---~a~~~g--------------~-------~~~~   54 (387)
T 3moi_A            1 MKIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDP--NEDVRER---FGKEYG--------------I-------PVFA   54 (387)
T ss_dssp             CCEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECS--CHHHHHH---HHHHHT--------------C-------CEES
T ss_pred             CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeC--CHHHHHH---HHHHcC--------------C-------CeEC
Confidence            46899999999 999999999999999999999987  3321111   111111              0       1121


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        +.+++ ....++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        55 --~~~el-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-~Vl~EKP   96 (387)
T 3moi_A           55 --TLAEM-MQHVQMDAVYIASPHQFHCEHVVQASEQGL-HIIVEKP   96 (387)
T ss_dssp             --SHHHH-HHHSCCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             --CHHHH-HcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-ceeeeCC
Confidence              34443 223479999999999999999999999995 5667654

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=98.31  E-value=8.8e-07  Score=78.78  Aligned_cols=100  Identities=23%  Similarity=0.286  Sum_probs=65.0

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i   79 (296)
                      |++ .+|||+|+|+ |++|+.+++.+.++|+++|+++.++..+.     ... .+ .+.+. +.   ..   .     .+
T Consensus         1 ~~~-~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~-----~~g-~d-~~~~~-g~---~~---~-----~v   60 (273)
T 1dih_A            1 MHD-ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSS-----LLG-SD-AGELA-GA---GK---T-----GV   60 (273)
T ss_dssp             -CC-CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCT-----TCS-CC-TTCSS-SS---SC---C-----SC
T ss_pred             CCC-CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchh-----hhh-hh-HHHHc-CC---Cc---C-----Cc
Confidence            663 2489999999 99999999999999999999998862221     000 00 00000 00   00   0     01


Q ss_pred             EEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        80 ~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .++  .|++++   ..++|+|+++|....+.+.+..++++|.. +|+
T Consensus        61 ~~~--~dl~~~---l~~~DvVIDft~p~~~~~~~~~a~~~G~~-vVi  101 (273)
T 1dih_A           61 TVQ--SSLDAV---KDDFDVFIDFTRPEGTLNHLAFCRQHGKG-MVI  101 (273)
T ss_dssp             CEE--SCSTTT---TTSCSEEEECSCHHHHHHHHHHHHHTTCE-EEE
T ss_pred             eec--CCHHHH---hcCCCEEEEcCChHHHHHHHHHHHhCCCC-EEE
Confidence            122  245554   24799999998888888999999999985 445

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.31  E-value=7.1e-07  Score=80.10  Aligned_cols=93  Identities=16%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             CCCCC-eeEEEEEecCHHHHHHHHHHHc---CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECC
Q 022491            1 MAGDK-KIKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE   76 (296)
Q Consensus         1 m~~~m-~i~vgI~G~G~iG~~l~r~l~~---~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~   76 (296)
                      |..+| ++||||+|+|.+|+.+++.+..   ++.++++++.++. ..         ...++              +    
T Consensus         1 M~~~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~-~~---------a~~~g--------------~----   52 (294)
T 1lc0_A            1 MITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-EL---------GSLDE--------------V----   52 (294)
T ss_dssp             CCCCCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-CC---------CEETT--------------E----
T ss_pred             CCCCCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECch-HH---------HHHcC--------------C----
Confidence            54443 4899999999999999999887   6889999999862 11         11010              1    


Q ss_pred             EEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        77 ~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                         + +  .+.+++ ..+.++|+|+.|||+..+.+.+.+++++|. .|++.-|
T Consensus        53 ---~-~--~~~~el-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP   97 (294)
T 1lc0_A           53 ---R-Q--ISLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAGK-HVLVEYP   97 (294)
T ss_dssp             ---E-B--CCHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTTC-EEEEESC
T ss_pred             ---C-C--CCHHHH-hcCCCCCEEEEeCCcHhHHHHHHHHHHCCC-cEEEeCC
Confidence               0 0  133333 123479999999999999999999999996 4666544

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.29  E-value=6.6e-07  Score=81.85  Aligned_cols=96  Identities=23%  Similarity=0.242  Sum_probs=67.9

Q ss_pred             eeEEEEEecC-HHHHHHHHHHHcC-CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFG-RIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G-~iG~~l~r~l~~~-p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ++||||+|+| .+|+.+++.+.+. |.+++++|.|+  +.+....   +...|+.                    .+++.
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~--~~~~~~~---~a~~~~~--------------------~~~~~   72 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSR--TRSHAEE---FAKMVGN--------------------PAVFD   72 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECS--SHHHHHH---HHHHHSS--------------------CEEES
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcC--CHHHHHH---HHHHhCC--------------------CcccC
Confidence            5899999999 8999999999998 89999999987  3321111   1111110                    01221


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                        |.+++ ..+.++|+|+.|||...+.+.+..++++|. .|++.-|-
T Consensus        73 --~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKPl  115 (340)
T 1zh8_A           73 --SYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKGV-HVICEKPI  115 (340)
T ss_dssp             --CHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTTC-EEEEESSS
T ss_pred             --CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHCCC-cEEEeCCC
Confidence              33443 223579999999999999999999999995 56676553

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.29  E-value=1.5e-06  Score=82.17  Aligned_cols=99  Identities=13%  Similarity=0.106  Sum_probs=66.9

Q ss_pred             eeEEEEEecCHHHH-HHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~-~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|+ .+++.|.+++++++++|.++  +.+.. ..  +...++. + .     .         .+.++  
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~--~~~~~-~~--~a~~~g~-~-~-----~---------~~~~~--  139 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSG--NAEKA-KI--VAAEYGV-D-P-----R---------KIYDY--  139 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECS--CHHHH-HH--HHHHTTC-C-G-----G---------GEECS--
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcC--CHHHH-HH--HHHHhCC-C-c-----c---------ccccc--
Confidence            48999999999997 89999999999999999987  33211 11  1111110 0 0     0         00011  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+.+++ ..+.++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus       140 ~~~~~l-l~~~~vD~V~iatp~~~h~~~~~~al~aGk-~Vl~EKP  182 (433)
T 1h6d_A          140 SNFDKI-AKDPKIDAVYIILPNSLHAEFAIRAFKAGK-HVMCEKP  182 (433)
T ss_dssp             SSGGGG-GGCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             CCHHHH-hcCCCCCEEEEcCCchhHHHHHHHHHHCCC-cEEEcCC
Confidence            134444 123479999999999999999999999995 4666544

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.28  E-value=6.6e-07  Score=80.83  Aligned_cols=92  Identities=17%  Similarity=0.246  Sum_probs=65.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|+|.+|+.+++.|.++|+++++++.++  +.+....          +. ..               ++.+.  
T Consensus        10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~--~~~~~~~----------~~-~~---------------~~~~~--   59 (315)
T 3c1a_A           10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASS--NPDNLAL----------VP-PG---------------CVIES--   59 (315)
T ss_dssp             CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEES--CHHHHTT----------CC-TT---------------CEEES--
T ss_pred             cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeC--CHHHHHH----------HH-hh---------------CcccC--
Confidence            5899999999999999999999999999999987  3321100          00 00               11221  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      +++++ ....++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        60 ~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~v~~eKP  101 (315)
T 3c1a_A           60 DWRSV-VSAPEVEAVIIATPPATHAEITLAAIASGK-AVLVEKP  101 (315)
T ss_dssp             STHHH-HTCTTCCEEEEESCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             CHHHH-hhCCCCCEEEEeCChHHHHHHHHHHHHCCC-cEEEcCC
Confidence            34443 112479999999999999999999999995 4666543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.27  E-value=1.8e-06  Score=75.47  Aligned_cols=184  Identities=17%  Similarity=0.141  Sum_probs=99.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||+|+|+|++|+.+++++.++|+ +|+++.++..+.         +  .     +         +       +++  .|
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~---------~--~-----g---------v-------~v~--~d   48 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKA---------T--T-----P---------Y-------QQY--QH   48 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC-------------C-----C---------S-------CBC--SC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCccc---------c--C-----C---------C-------cee--CC
Confidence            899999999999999999999999 999998872221         0  0     0         0       011  14


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccC------CCCCeEEcCCcchh
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYK------PELDIVSNASCTTN  160 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~------~~~~iIs~p~C~~t  160 (296)
                      ++++   . ++|+||++|......+.++  ++.|.. +|+..         .|+++++++      +...++-.|+ +..
T Consensus        49 l~~l---~-~~DVvIDft~p~a~~~~~~--l~~g~~-vVigT---------TG~s~e~~~~l~~aa~~~~v~~a~N-~S~  111 (243)
T 3qy9_A           49 IADV---K-GADVAIDFSNPNLLFPLLD--EDFHLP-LVVAT---------TGEKEKLLNKLDELSQNMPVFFSAN-MSY  111 (243)
T ss_dssp             TTTC---T-TCSEEEECSCHHHHHHHHT--SCCCCC-EEECC---------CSSHHHHHHHHHHHTTTSEEEECSS-CCH
T ss_pred             HHHH---h-CCCEEEEeCChHHHHHHHH--HhcCCc-eEeCC---------CCCCHHHHHHHHHHHhcCCEEEECC-ccH
Confidence            5555   3 7899998887766666665  677774 44422         255443322      1344554444 333


Q ss_pred             hhHhHHHHH---HhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccc-----cceeeeccCChhhHHHHhccccCCc
Q 022491          161 CLAPLAKVI---HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAA-----SFNIIPSSTGAAKAVGKVLPALNGK  232 (296)
Q Consensus       161 al~~~l~~L---~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~-----~~ni~P~~~g~~~~~~~~~pel~~~  232 (296)
                      ++.++++.+   .+.|+=-...+.-.|=    ..-+|+|||+...-+..+     ..+-.+...+..      -+--.+.
T Consensus       112 Gv~l~~~~~~~aa~~l~~~dieI~E~HH----~~K~DaPSGTA~~la~~i~~~~~~~~~~~~r~~~~------~~r~~~~  181 (243)
T 3qy9_A          112 GVHALTKILAAAVPLLDDFDIELTEAHH----NKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELN------EKRQPQD  181 (243)
T ss_dssp             HHHHHHHHHHHHHHHTTTSEEEEEEEEC----TTCCSSSCHHHHHHHHHHHHHSTTCEEECCCTTTC------CCCCTTE
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEcCC----CCCCCCCCHHHHHHHHHHHhcCccccccccccccc------CCccCCc
Confidence            444443333   2333201222332222    234688887543322222     111111111100      0001134


Q ss_pred             eeEEEEEeeeCceEEEEEEE
Q 022491          233 LTGMSFRVPTVDVSVVDLTV  252 (296)
Q Consensus       233 v~~~~~~VP~~~g~~~~~~~  252 (296)
                      +-++++|.|-.-|+-..++.
T Consensus       182 i~i~s~R~g~ivg~h~v~f~  201 (243)
T 3qy9_A          182 IGIHSIRGGTIVGEHEVLFA  201 (243)
T ss_dssp             EEEEEEECTTCCEEEEEEEE
T ss_pred             ceEEEEECCCCcEEEEEEEc
Confidence            77889999988887655543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.26  E-value=6.7e-07  Score=82.40  Aligned_cols=98  Identities=15%  Similarity=0.236  Sum_probs=66.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|+|.+|+.+++.|.++|++++++|.++  +.+....   +...++...        +         ...+.  
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~--~~~~~~~---~a~~~~~~~--------~---------~~~~~--   61 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASR--SLEKAKA---FATANNYPE--------S---------TKIHG--   61 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECS--SHHHHHH---HHHHTTCCT--------T---------CEEES--
T ss_pred             ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcC--CHHHHHH---HHHHhCCCC--------C---------CeeeC--
Confidence            4899999999999999999999999999999987  3321111   111111000        0         01121  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      +.+++ ....++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        62 ~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~V~~EKP  103 (362)
T 1ydw_A           62 SYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKGK-HILLEKP  103 (362)
T ss_dssp             SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTTC-EEEECSS
T ss_pred             CHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHCCC-eEEEecC
Confidence            33333 112479999999999999999999999996 4666544

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.24  E-value=2.6e-07  Score=87.59  Aligned_cols=97  Identities=14%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcC-CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~-p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      +||||+|+    |.+|+.+++.|.++ |.++|++|.++  +.+.. ..  ....|+. +                 .+..
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~--~~~~~-~~--~a~~~g~-~-----------------~~~~   77 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSP--KIETS-IA--TIQRLKL-S-----------------NATA   77 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECS--SHHHH-HH--HHHHTTC-T-----------------TCEE
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeC--CHHHH-HH--HHHHcCC-C-----------------ccee
Confidence            89999999    99999999999999 99999999987  33211 11  1111110 0                 0012


Q ss_pred             EecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC-----CeEEeeCC
Q 022491           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVVISAP  129 (296)
Q Consensus        82 ~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~-----k~vvid~~  129 (296)
                      +.  +.+++ ....++|+|+.|||...+.+.+..++++|.     |.|++.-|
T Consensus        78 ~~--~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP  127 (438)
T 3btv_A           78 FP--TLESF-ASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWA  127 (438)
T ss_dssp             ES--SHHHH-HHCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESS
T ss_pred             eC--CHHHH-hcCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCc
Confidence            21  34443 223479999999999999999999999993     56777654

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.21  E-value=2.6e-06  Score=80.72  Aligned_cols=101  Identities=24%  Similarity=0.296  Sum_probs=67.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccc-ccccCCCCcCcceeeeCCceeEECCEEEEEEe-
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG-   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~-~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~-   83 (296)
                      ++||||+|+|.+|+.+++.|.++|+++|++|.|+  +.+......+ +. .++ ++ .                .+++. 
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~--~~~~~~~~a~~~~-~~g-~~-~----------------~~~~~~   78 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP--DPYMVGRAQEILK-KNG-KK-P----------------AKVFGN   78 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS--CHHHHHHHHHHHH-HTT-CC-C----------------CEEECS
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeC--CHHHHHHHHHHHH-hcC-CC-C----------------Cceecc
Confidence            4899999999999999999999999999999987  3321111100 00 010 00 0                01121 


Q ss_pred             -cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 -FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 -~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       ..+.+++ ..+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        79 ~~~~~~~l-l~~~~vD~V~i~tp~~~h~~~~~~al~aGk-hV~~EKP  123 (444)
T 2ixa_A           79 GNDDYKNM-LKDKNIDAVFVSSPWEWHHEHGVAAMKAGK-IVGMEVS  123 (444)
T ss_dssp             STTTHHHH-TTCTTCCEEEECCCGGGHHHHHHHHHHTTC-EEEECCC
T ss_pred             CCCCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence             0133333 123479999999999999999999999996 4666533

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.21  E-value=5.8e-06  Score=74.83  Aligned_cols=94  Identities=19%  Similarity=0.227  Sum_probs=63.3

Q ss_pred             CeeEEEEEecCHHHH-HHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G~iG~-~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ||+||||+|+|.+|+ .+++.|.++|+++++ |.++  +.+....   ....++. +           .        .+.
T Consensus         1 m~~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d~--~~~~~~~---~a~~~g~-~-----------~--------~~~   54 (323)
T 1xea_A            1 MSLKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTR--NPKVLGT---LATRYRV-S-----------A--------TCT   54 (323)
T ss_dssp             -CEEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECS--CHHHHHH---HHHHTTC-C-----------C--------CCS
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCCceEE-EEeC--CHHHHHH---HHHHcCC-C-----------c--------ccc
Confidence            458999999999998 499999999999999 9887  3321111   1111110 0           0        000


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        +..+. . ..++|+|+.|||...+.+.+..++++|.. +++.-|
T Consensus        55 --~~~~~-l-~~~~D~V~i~tp~~~h~~~~~~al~~Gk~-V~~EKP   95 (323)
T 1xea_A           55 --DYRDV-L-QYGVDAVMIHAATDVHSTLAAFFLHLGIP-TFVDKP   95 (323)
T ss_dssp             --STTGG-G-GGCCSEEEECSCGGGHHHHHHHHHHTTCC-EEEESC
T ss_pred             --CHHHH-h-hcCCCEEEEECCchhHHHHHHHHHHCCCe-EEEeCC
Confidence              22222 1 35899999999999999999999999963 566543

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=98.19  E-value=6.2e-06  Score=75.06  Aligned_cols=98  Identities=20%  Similarity=0.252  Sum_probs=60.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcC------CCcEEEEEecCCCCh-h---hhhhcccccccCCCCcCcceeeeCCceeEEC
Q 022491            6 KIKIGINGFGRIGRLVARVALQR------DDVELVAVNDPFIST-D---YMTYMFKYDSVHGQWKHNELKVKDEKTLLFG   75 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~------p~~elv~i~~~~~~~-~---~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~   75 (296)
                      ++||||+|+|.+|+.+++.|.++      ++++|++|.++.... +   ++...+.....++.+.       .   .   
T Consensus         4 ~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-------~---~---   70 (325)
T 3ing_A            4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-------D---R---   70 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-------S---S---
T ss_pred             eEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-------c---c---
Confidence            58999999999999999999876      789999999873221 0   0000000000000000       0   0   


Q ss_pred             CEEEEEEecCCCCCCCcccCCCcEEEEccCCccC----HHHHHHHHHCCCCeEEee
Q 022491           76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD----KDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        76 ~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~----~~~~~~~l~~G~k~vvid  127 (296)
                           .+   +.+++ ..+.++|+|++|||+...    .+....++++|.  -|+.
T Consensus        71 -----~~---d~~e~-l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGk--hVVt  115 (325)
T 3ing_A           71 -----AF---SGPED-LMGEAADLLVDCTPASRDGVREYSLYRMAFESGM--NVVT  115 (325)
T ss_dssp             -----BC---CSGGG-GTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTC--EEEE
T ss_pred             -----cC---CHHHH-hcCCCCCEEEECCCCccccchHHHHHHHHHHCCC--eEEE
Confidence                 00   22222 124579999999998644    478889999998  4554

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.19  E-value=3.2e-06  Score=79.99  Aligned_cols=89  Identities=20%  Similarity=0.282  Sum_probs=61.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcC---------CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECC
Q 022491            6 KIKIGINGFGRIGRLVARVALQR---------DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE   76 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~---------p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~   76 (296)
                      ++||||+|+|.+|+.+++.|.+|         +++++++|.++  +.+.. ..+ .+        + .       .    
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~--~~~~~-~~~-~~--------~-~-------~----   65 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVR--NLDKA-EAL-AG--------G-L-------P----   65 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECS--CHHHH-HHH-HT--------T-C-------C----
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEEC--CHHHh-hhh-cc--------c-C-------c----
Confidence            48999999999999999988753         78999999987  33211 100 00        0 0       0    


Q ss_pred             EEEEEEecCCCCCCCcccCCCcEEEEccCC-ccCHHHHHHHHHCCCCeEEe
Q 022491           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        77 ~~i~~~~~~d~~~i~~~~~~~DvV~~at~~-~~~~~~~~~~l~~G~k~vvi  126 (296)
                          .+  .|++++ ..+.++|+|++|||. ..+.+++..++++|. .|+.
T Consensus        66 ----~~--~d~~el-l~d~diDvVve~tp~~~~h~~~~~~AL~aGK-hVvt  108 (444)
T 3mtj_A           66 ----LT--TNPFDV-VDDPEIDIVVELIGGLEPARELVMQAIANGK-HVVT  108 (444)
T ss_dssp             ----EE--SCTHHH-HTCTTCCEEEECCCSSTTHHHHHHHHHHTTC-EEEE
T ss_pred             ----cc--CCHHHH-hcCCCCCEEEEcCCCchHHHHHHHHHHHcCC-EEEE
Confidence                11  134443 224579999999997 788899999999997 3444

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.19  E-value=2.1e-06  Score=77.63  Aligned_cols=94  Identities=20%  Similarity=0.269  Sum_probs=65.8

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |+||||+|+ |++|+.+++.+.+. ++++++|.|+..+..      .....++    +                .+++. 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~------~~~~~~~----~----------------~~~~~-   54 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVG------LVDSFFP----E----------------AEFFT-   54 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCG------GGGGTCT----T----------------CEEES-
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHH------HHHhhCC----C----------------CceeC-
Confidence            389999999 89999999999987 589999998733321      1122221    0                01221 


Q ss_pred             CCCCCCC-----c--ccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIP-----W--AKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~-----~--~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +.+++.     |  .+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        55 -~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~aGk-hVl~EKP  104 (312)
T 3o9z_A           55 -EPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRLGA-NALSEKP  104 (312)
T ss_dssp             -CHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             -CHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHHCCC-eEEEECC
Confidence             333331     0  24689999999999999999999999995 4666543

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=98.18  E-value=6.3e-06  Score=75.25  Aligned_cols=85  Identities=22%  Similarity=0.260  Sum_probs=61.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC--------CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p--------~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      ++||||+|+|.+|+.+++.|.+++        ++++++|.++.  ...       ...   +. .      +  .     
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~--~~~-------~~~---~~-~------~--~-----   56 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRD--PRK-------PRA---IP-Q------E--L-----   56 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSC--TTS-------CCS---SC-G------G--G-----
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECC--HHH-------hhc---cC-c------c--c-----
Confidence            489999999999999999999887        78999999872  210       000   11 0      0  0     


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccCCcc-CHHHHHHHHHCCCCeEEee
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFT-DKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~-~~~~~~~~l~~G~k~vvid  127 (296)
                         .+  .|++++   . ++|+|++|||+.. +.+++.+++++|.  -|+.
T Consensus        57 ---~~--~d~~~l---l-~iDvVve~t~~~~~a~~~~~~AL~aGK--hVVt   96 (332)
T 2ejw_A           57 ---LR--AEPFDL---L-EADLVVEAMGGVEAPLRLVLPALEAGI--PLIT   96 (332)
T ss_dssp             ---EE--SSCCCC---T-TCSEEEECCCCSHHHHHHHHHHHHTTC--CEEE
T ss_pred             ---cc--CCHHHH---h-CCCEEEECCCCcHHHHHHHHHHHHcCC--eEEE
Confidence               11  256666   2 8999999999874 4678888999997  4444

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.18  E-value=5.1e-07  Score=82.41  Aligned_cols=97  Identities=12%  Similarity=0.082  Sum_probs=64.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCC--ChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI--STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~--~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      ||+||||+|+|.+|+.+++.+  +|+++|++|.|+..  ..+..+...   ..|+              +     ..+.+
T Consensus         1 M~~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~---~~~~--------------~-----~~~~~   56 (337)
T 3ip3_A            1 MSLKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAI---SEMN--------------I-----KPKKY   56 (337)
T ss_dssp             -CEEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHH---HTTT--------------C-----CCEEC
T ss_pred             CceEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHH---HHcC--------------C-----CCccc
Confidence            569999999977777888887  89999999998733  112211110   0011              0     00122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .  |.+++ ..+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        57 ~--~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP   99 (337)
T 3ip3_A           57 N--NWWEM-LEKEKPDILVINTVFSLNGKILLEALERKI-HAFVEKP   99 (337)
T ss_dssp             S--SHHHH-HHHHCCSEEEECSSHHHHHHHHHHHHHTTC-EEEECSS
T ss_pred             C--CHHHH-hcCCCCCEEEEeCCcchHHHHHHHHHHCCC-cEEEeCC
Confidence            1  34444 223579999999999999999999999996 4666544

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.17  E-value=2e-06  Score=74.55  Aligned_cols=133  Identities=20%  Similarity=0.231  Sum_probs=80.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |||||+|+|.+|+.+++.|. .++++++++.++....+         ..                          +  .+
T Consensus         1 m~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~~---------~~--------------------------~--~~   42 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEHE---------KM--------------------------V--RG   42 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCCT---------TE--------------------------E--SS
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcchh---------hh--------------------------c--CC
Confidence            48999999999999999988 57899999988721110         00                          0  02


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC--CCCeEEcccChhccC-CCCCeEEcCCcchhhhH
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEKEYK-PELDIVSNASCTTNCLA  163 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~--d~~~~v~gvn~~~l~-~~~~iIs~p~C~~tal~  163 (296)
                      ++++-  ..++|+||+|+|...+.+.+..++++|.  .|++.+.-  +.+.+.-.+- +..+ .+..++-.+++...  .
T Consensus        43 ~~~l~--~~~~DvVv~~~~~~~~~~~~~~~l~~G~--~vv~~~~~~~~~~~~~~~l~-~~a~~~g~~~~i~~~~~g~--~  115 (236)
T 2dc1_A           43 IDEFL--QREMDVAVEAASQQAVKDYAEKILKAGI--DLIVLSTGAFADRDFLSRVR-EVCRKTGRRVYIASGAIGG--L  115 (236)
T ss_dssp             HHHHT--TSCCSEEEECSCHHHHHHHHHHHHHTTC--EEEESCGGGGGSHHHHHHHH-HHHHHHCCCEEECCTTCSC--H
T ss_pred             HHHHh--cCCCCEEEECCCHHHHHHHHHHHHHCCC--cEEEECcccCChHHHHHHHH-HHHHhcCCeEEecCccccC--h
Confidence            33321  1478999999999999999999999998  56654321  1110000110 1111 14555555555433  2


Q ss_pred             hHHHHHHhhcCeeEEEEEEEeec
Q 022491          164 PLAKVIHDKFGIVEGLMTTVHSI  186 (296)
Q Consensus       164 ~~l~~L~~~~gi~~~~~~~v~a~  186 (296)
                      ..++....  +++...+++.+..
T Consensus       116 ~~~~~~~~--~~~~~~~~~~~~~  136 (236)
T 2dc1_A          116 DAIFSASE--LIEEIVLTTRKNW  136 (236)
T ss_dssp             HHHHHTGG--GEEEEEEEEEEEG
T ss_pred             HHHHHhhc--cccEEEEEEEcCh
Confidence            33444332  6777766766553

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=98.17  E-value=2.6e-06  Score=77.61  Aligned_cols=97  Identities=22%  Similarity=0.285  Sum_probs=60.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcC--------CCcEEEEEecCCCCh-hh--hhhcccccccCCCCcCcceeeeCCceeEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQR--------DDVELVAVNDPFIST-DY--MTYMFKYDSVHGQWKHNELKVKDEKTLLF   74 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~--------p~~elv~i~~~~~~~-~~--~a~~l~~~s~~~~~~~~~v~~~~~~~l~~   74 (296)
                      |+||||+|+|.+|+.+++.|.++        ++++|++|.++.... +.  ++..+  ...++          .+  .  
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~--~~~~~----------~~--~--   65 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEAL--RMKRE----------TG--M--   65 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHH--HHHHH----------HS--S--
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHH--hhhcc----------Cc--c--
Confidence            38999999999999999999988        899999999873221 00  00000  00000          00  0  


Q ss_pred             CCEEEEEEecCCCCCCCcccCCCcEEEEccCCccC----HHHHHHHHHCCCCeEEee
Q 022491           75 GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD----KDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        75 ~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~----~~~~~~~l~~G~k~vvid  127 (296)
                            ++...|++++ ....++|+|++|||+..+    .+++..++++|.  -|+.
T Consensus        66 ------~~~~~d~~~l-l~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGk--hVv~  113 (327)
T 3do5_A           66 ------LRDDAKAIEV-VRSADYDVLIEASVTRVDGGEGVNYIREALKRGK--HVVT  113 (327)
T ss_dssp             ------CSBCCCHHHH-HHHSCCSEEEECCCCC----CHHHHHHHHHTTTC--EEEE
T ss_pred             ------ccCCCCHHHH-hcCCCCCEEEECCCCcccchhHHHHHHHHHHCCC--eEEe
Confidence                  0000122332 123579999999998775    788899999997  4554

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.16  E-value=1.1e-06  Score=84.31  Aligned_cols=99  Identities=14%  Similarity=0.134  Sum_probs=68.8

Q ss_pred             eeEEEEEec----CHHHHHHHHHHHcC-CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEE
Q 022491            6 KIKIGINGF----GRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (296)
Q Consensus         6 ~i~vgI~G~----G~iG~~l~r~l~~~-p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~   80 (296)
                      ++||||+|+    |.+|+.+++.|.++ |.++|++|.++  +.+.. ..  +...|+. +        +         +.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~--~~~~a-~~--~a~~~g~-~--------~---------~~   95 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNP--TLKSS-LQ--TIEQLQL-K--------H---------AT   95 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECS--CHHHH-HH--HHHHTTC-T--------T---------CE
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeC--CHHHH-HH--HHHHcCC-C--------c---------ce
Confidence            489999999    99999999999998 89999999987  33211 11  1111110 0        0         01


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC-----CeEEeeCCC
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVVISAPS  130 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~-----k~vvid~~~  130 (296)
                      .+.  +++++ ..+.++|+|+.|||...+.+.+..++++|.     |.|++.-|.
T Consensus        96 ~~~--d~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPl  147 (479)
T 2nvw_A           96 GFD--SLESF-AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWAL  147 (479)
T ss_dssp             EES--CHHHH-HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSS
T ss_pred             eeC--CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCC
Confidence            121  34443 223579999999999999999999999993     667787653

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.11  E-value=3.4e-06  Score=76.49  Aligned_cols=94  Identities=22%  Similarity=0.188  Sum_probs=66.1

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |+||||+|+ |++|+.+++.+.+. +.+++++.|+..+..      .....++    +                .+++. 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~------~~~~~~~----~----------------~~~~~-   54 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSVG------IIDSISP----Q----------------SEFFT-   54 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCG------GGGGTCT----T----------------CEEES-
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHHH------HHHhhCC----C----------------CcEEC-
Confidence            489999999 89999999999887 699999998733321      1122221    0                01121 


Q ss_pred             CCCCCCC-----c---ccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIP-----W---AKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~-----~---~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       +.+++.     |   .+.++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        55 -~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~aGk-hVl~EKP  105 (318)
T 3oa2_A           55 -EFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGC-DVICEKP  105 (318)
T ss_dssp             -SHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             -CHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHHCCC-eEEEECC
Confidence             233320     0   13689999999999999999999999995 5677544

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.11  E-value=1.5e-06  Score=80.26  Aligned_cols=94  Identities=14%  Similarity=0.207  Sum_probs=63.1

Q ss_pred             eeEEEEEecCHHHH-HHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~-~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||||+|+|.+|. .+++.+. +|+++|++|.|+  +.+....   +...|+.-                    +.+. 
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~-~~~~~lvav~d~--~~~~a~~---~a~~~~~~--------------------~~~~-   78 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLL-RAGARLAGFHEK--DDALAAE---FSAVYADA--------------------RRIA-   78 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHH-HTTCEEEEEECS--CHHHHHH---HHHHSSSC--------------------CEES-
T ss_pred             CcEEEEECcCHHHHHHHHHHhh-cCCcEEEEEEcC--CHHHHHH---HHHHcCCC--------------------cccC-
Confidence            48999999999985 4556655 689999999987  3321111   11212100                    0121 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       |.+++ ..+.++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        79 -~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP  120 (361)
T 3u3x_A           79 -TAEEI-LEDENIGLIVSAAVSSERAELAIRAMQHGK-DVLVDKP  120 (361)
T ss_dssp             -CHHHH-HTCTTCCEEEECCCHHHHHHHHHHHHHTTC-EEEEESC
T ss_pred             -CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-eEEEeCC
Confidence             34443 223579999999999999999999999995 5677655

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.11  E-value=2.6e-06  Score=80.16  Aligned_cols=97  Identities=26%  Similarity=0.306  Sum_probs=64.3

Q ss_pred             eeEEEEEecCH---HHHHHHHHHHcCCCcEEEE-EecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            6 KIKIGINGFGR---IGRLVARVALQRDDVELVA-VNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         6 ~i~vgI~G~G~---iG~~l~r~l~~~p~~elv~-i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      ++||||+|+|.   +|+..++.+...+++++++ |.++  +.+....   ....++- + .      .          ++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~--~~~~a~~---~a~~~g~-~-~------~----------~~   93 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSS--TPEKAEA---SGRELGL-D-P------S----------RV   93 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCS--SHHHHHH---HHHHHTC-C-G------G----------GB
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCC--CHHHHHH---HHHHcCC-C-c------c----------cc
Confidence            48999999998   9999999999999999997 8876  3321111   1111110 0 0      0          00


Q ss_pred             EecCCCCCCCccc-----CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           82 FGFRNPEEIPWAK-----TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        82 ~~~~d~~~i~~~~-----~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      +  .+.+++ ...     .++|+|+.|||...+.+.+.+++++|. .|++.-|
T Consensus        94 ~--~~~~~l-l~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP  142 (417)
T 3v5n_A           94 Y--SDFKEM-AIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGI-HVICDKP  142 (417)
T ss_dssp             C--SCHHHH-HHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTC-EEEEESS
T ss_pred             c--CCHHHH-HhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCC-eEEEECC
Confidence            1  123332 112     469999999999999999999999995 4667655

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.09  E-value=3.3e-06  Score=79.83  Aligned_cols=105  Identities=15%  Similarity=0.244  Sum_probs=63.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCC-CCcCcceeeeCC-ceeE---ECCEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG-QWKHNELKVKDE-KTLL---FGEKPVA   80 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~-~~~~~~v~~~~~-~~l~---~~~~~i~   80 (296)
                      ++||||+|+|++|+.+++.+.+.|++++++|.|+.  .+......  ...|+ .|.   +...+. ..+.   -.+ ...
T Consensus        23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~--~era~~~a--~~~yG~~~~---~~~~~~~~~i~~a~~~g-~~~   94 (446)
T 3upl_A           23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARR--LPNTFKAI--RTAYGDEEN---AREATTESAMTRAIEAG-KIA   94 (446)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSS--THHHHHHH--HHHHSSSTT---EEECSSHHHHHHHHHTT-CEE
T ss_pred             ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCC--HHHHHHHH--HHhcCCccc---cccccchhhhhhhhccC-Cce
Confidence            49999999999999999999999999999999873  32211111  11011 111   000000 0000   000 012


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCc-cCHHHHHHHHHCCC
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGA  121 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~-~~~~~~~~~l~~G~  121 (296)
                      ++.  |.+++ ..+.++|+|++|||.. .+.+.+..++++|.
T Consensus        95 v~~--D~eeL-L~d~dIDaVviaTp~p~~H~e~a~~AL~AGK  133 (446)
T 3upl_A           95 VTD--DNDLI-LSNPLIDVIIDATGIPEVGAETGIAAIRNGK  133 (446)
T ss_dssp             EES--CHHHH-HTCTTCCEEEECSCCHHHHHHHHHHHHHTTC
T ss_pred             EEC--CHHHH-hcCCCCCEEEEcCCChHHHHHHHHHHHHcCC
Confidence            232  44444 2245799999999874 56789999999997

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=98.08  E-value=3.2e-06  Score=77.22  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=61.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC-------CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD-------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p-------~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      ++||||+|+|.+|+.+++.|.+++       ++++++|.++......  ..+  +  ...|. ...  ..+ .+.     
T Consensus         6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~--~~~--~--~~~~~-~~~--~~~-~~~-----   70 (331)
T 3c8m_A            6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYN--ERI--D--IGKVI-SYK--EKG-SLD-----   70 (331)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEEC--TTC--C--HHHHH-HHH--HTT-CGG-----
T ss_pred             EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhh--ccc--C--hHHHh-hhh--ccC-Ccc-----
Confidence            489999999999999999998876       6999999987322100  000  0  00000 000  000 000     


Q ss_pred             EEEEe-cCCCCCCCcccCCCcEEEEccCCc----cCHHHHHHHHHCCCCeEEee
Q 022491           79 VAVFG-FRNPEEIPWAKTGAEYVVESTGVF----TDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        79 i~~~~-~~d~~~i~~~~~~~DvV~~at~~~----~~~~~~~~~l~~G~k~vvid  127 (296)
                       .++. ..|++++ . +.++|+|++|||+.    .+.+++.+++++|.  -|+.
T Consensus        71 -~~~~~~~d~~~l-l-~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGk--hVvt  119 (331)
T 3c8m_A           71 -SLEYESISASEA-L-ARDFDIVVDATPASADGKKELAFYKETFENGK--DVVT  119 (331)
T ss_dssp             -GCCSEECCHHHH-H-HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTC--EEEE
T ss_pred             -cccCCCCCHHHH-h-CCCCCEEEECCCCCCccchHHHHHHHHHHCCC--eEEe
Confidence             0000 0133333 1 35799999999996    66778999999997  5554

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.05  E-value=5.3e-06  Score=75.49  Aligned_cols=93  Identities=13%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             eeEEEEEecCHHHH-HHHHHHHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~-~l~r~l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ++||||+|+|.+|. .+++.|. +++++|++|.|+..+. +.+      ...|+.-.                    .+ 
T Consensus         4 ~~rvgiiG~G~~~~~~~~~~l~-~~~~~lvav~d~~~~~~~~~------a~~~~~~~--------------------~~-   55 (336)
T 2p2s_A            4 KIRFAAIGLAHNHIYDMCQQLI-DAGAELAGVFESDSDNRAKF------TSLFPSVP--------------------FA-   55 (336)
T ss_dssp             CCEEEEECCSSTHHHHHHHHHH-HTTCEEEEEECSCTTSCHHH------HHHSTTCC--------------------BC-
T ss_pred             ccEEEEECCChHHHHHhhhhhc-CCCcEEEEEeCCCHHHHHHH------HHhcCCCc--------------------cc-
Confidence            48999999999996 5777775 5789999999873322 111      11121000                    11 


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       .|++++ ..+.++|+|+.|||+..+.+.+..++++|. .|++.-|
T Consensus        56 -~~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-hVl~EKP   98 (336)
T 2p2s_A           56 -ASAEQL-ITDASIDLIACAVIPCDRAELALRTLDAGK-DFFTAKP   98 (336)
T ss_dssp             -SCHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             -CCHHHH-hhCCCCCEEEEeCChhhHHHHHHHHHHCCC-cEEEeCC
Confidence             133333 123479999999999999999999999995 4666644

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.99  E-value=2.5e-05  Score=68.25  Aligned_cols=73  Identities=21%  Similarity=0.277  Sum_probs=57.3

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |||+|+|+ |++|+.+++.+.++|+++++++.++..+.                                          
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl------------------------------------------   38 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPL------------------------------------------   38 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCT------------------------------------------
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCH------------------------------------------
Confidence            48999998 99999999999999999999998761111                                          


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                        +++.  ..++|+|+|+|......+.+..+++.|+. +|+
T Consensus        39 --~~~~--~~~~DvvIDfT~p~a~~~~~~~a~~~g~~-~Vi   74 (245)
T 1p9l_A           39 --SLLT--DGNTEVVIDFTHPDVVMGNLEFLIDNGIH-AVV   74 (245)
T ss_dssp             --HHHH--HTTCCEEEECSCTTTHHHHHHHHHHTTCE-EEE
T ss_pred             --HHHh--ccCCcEEEEccChHHHHHHHHHHHHcCCC-EEE
Confidence              1110  12579999999998888999999999985 444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.97  E-value=1.5e-05  Score=60.41  Aligned_cols=98  Identities=15%  Similarity=0.203  Sum_probs=59.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |++||.|+|+|.+|+.+++.|.+++..+++.+ ++  +.+.+.. +.  .  .    + +.      ..       ....
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~-~r--~~~~~~~-~~--~--~----~-~~------~~-------~~d~   57 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVA-DH--DLAALAV-LN--R--M----G-VA------TK-------QVDA   57 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEE-ES--CHHHHHH-HH--T--T----T-CE------EE-------ECCT
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEE-eC--CHHHHHH-HH--h--C----C-Cc------EE-------EecC
Confidence            45799999999999999999998875676555 44  3321111 10  0  0    0 00      00       0000


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      .+++.+.-...++|+||.|+|..........+.+.|++  .++.++
T Consensus        58 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~--~~~~~~  101 (118)
T 3ic5_A           58 KDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAH--YFDLTE  101 (118)
T ss_dssp             TCHHHHHHHTTTCSEEEECSCGGGHHHHHHHHHHTTCE--EECCCS
T ss_pred             CCHHHHHHHHcCCCEEEECCCchhhHHHHHHHHHhCCC--EEEecC
Confidence            11111110124799999999998888888888999994  455443

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.97  E-value=5.9e-06  Score=77.13  Aligned_cols=97  Identities=23%  Similarity=0.246  Sum_probs=64.5

Q ss_pred             eeEEEEEecCH---HHHHHHHHHHcCCCcEEEE-EecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            6 KIKIGINGFGR---IGRLVARVALQRDDVELVA-VNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         6 ~i~vgI~G~G~---iG~~l~r~l~~~p~~elv~-i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      ++||||+|+|.   +|+..++.+...+++++++ |.|+  +.+....   ....|+- + . ..               +
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~--~~~~a~~---~a~~~g~-~-~-~~---------------~   68 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDI--DPIRGSA---FGEQLGV-D-S-ER---------------C   68 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCS--SHHHHHH---HHHHTTC-C-G-GG---------------B
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCC--CHHHHHH---HHHHhCC-C-c-ce---------------e
Confidence            48999999999   9999999999999999998 7776  3321111   1111110 0 0 00               0


Q ss_pred             EecCCCCCCCccc-----CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           82 FGFRNPEEIPWAK-----TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        82 ~~~~d~~~i~~~~-----~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      +.  |.+++ ...     .++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        69 ~~--~~~~l-l~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP  117 (398)
T 3dty_A           69 YA--DYLSM-FEQEARRADGIQAVSIATPNGTHYSITKAALEAGL-HVVCEKP  117 (398)
T ss_dssp             CS--SHHHH-HHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             eC--CHHHH-HhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence            10  22222 111     369999999999999999999999995 4666544

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.96  E-value=9.5e-06  Score=75.23  Aligned_cols=90  Identities=19%  Similarity=0.252  Sum_probs=63.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ++||||+|+| .|+..++.+.+.| .+||++|.++..+- +..      ...|+                     ++.+.
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~------a~~~g---------------------v~~~~   58 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSREL------AHAFG---------------------IPLYT   58 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHH------HHHTT---------------------CCEES
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHH------HHHhC---------------------CCEEC
Confidence            5999999999 5999999998887 59999999873321 111      22121                     11232


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccC----HHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTD----KDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~----~~~~~~~l~~G~k~vvid~~  129 (296)
                        |.+++   ..++|+|+.|||...+    .+.+.+++++|. .|++.-|
T Consensus        59 --~~~~l---~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGk-hVl~EKP  102 (372)
T 4gmf_A           59 --SPEQI---TGMPDIACIVVRSTVAGGAGTQLARHFLARGV-HVIQEHP  102 (372)
T ss_dssp             --SGGGC---CSCCSEEEECCC--CTTSHHHHHHHHHHHTTC-EEEEESC
T ss_pred             --CHHHH---hcCCCEEEEECCCcccchhHHHHHHHHHHcCC-cEEEecC
Confidence              55666   2579999999999887    788999999996 4666654

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.95  E-value=1.2e-05  Score=72.89  Aligned_cols=93  Identities=19%  Similarity=0.214  Sum_probs=62.3

Q ss_pred             eEEEEEecCHHHHHH-HHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLV-ARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l-~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||||+|+|.+|+.+ ++.|.+ +.+++++|.++  +.+.... +  ...++.-.                    .+  .
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~--~~~~~~~-~--~~~~g~~~--------------------~~--~   52 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMST--SAERGAA-Y--ATENGIGK--------------------SV--T   52 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECS--CHHHHHH-H--HHHTTCSC--------------------CB--S
T ss_pred             CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECC--CHHHHHH-H--HHHcCCCc--------------------cc--C
Confidence            589999999999998 888888 88999999987  3321111 1  11111000                    01  1


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      +.+++ ....++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        53 ~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~v~~ekP   94 (332)
T 2glx_A           53 SVEEL-VGDPDVDAVYVSTTNELHREQTLAAIRAGK-HVLCEKP   94 (332)
T ss_dssp             CHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             CHHHH-hcCCCCCEEEEeCChhHhHHHHHHHHHCCC-eEEEeCC
Confidence            22332 112369999999999999999999999995 4566543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.87  E-value=1.5e-05  Score=73.42  Aligned_cols=94  Identities=20%  Similarity=0.158  Sum_probs=60.4

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +|||.|+|+|++|+.+++.|.++.++.++.++..  ..+   ..      .....          .+.+        ...
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~~--~~~---~~------~~~~~----------~~~~--------d~~   66 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNNE--NLE---KV------KEFAT----------PLKV--------DAS   66 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHH--HHH---HH------TTTSE----------EEEC--------CTT
T ss_pred             ccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCHH--HHH---HH------hccCC----------cEEE--------ecC
Confidence            4799999999999999999988776654433221  111   11      10000          0110        011


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      |.+.+.-...++|+|+.|+|.+.+...++.++++|+  -++|++.
T Consensus        67 d~~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~~~g~--~yvD~s~  109 (365)
T 3abi_A           67 NFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKV--DMVDVSF  109 (365)
T ss_dssp             CHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTC--EEEECCC
T ss_pred             CHHHHHHHHhCCCEEEEecCCcccchHHHHHHhcCc--ceEeeec
Confidence            222221112589999999999999999999999999  7888764

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.86  E-value=1.7e-05  Score=67.72  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=62.9

Q ss_pred             eeEEEEEecCHHHHHHHHHH-HcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVA-LQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l-~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      .+||+|+|+|.+|+.+++.+ .+. .++++++.|.  +++..               +         -.+++.  ++...
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~--dp~k~---------------g---------~~i~gv--~V~~~  130 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDV--DPEKV---------------G---------RPVRGG--VIEHV  130 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEES--CTTTT---------------T---------CEETTE--EEEEG
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeC--CHHHH---------------h---------hhhcCC--eeecH
Confidence            37999999999999999963 334 8999999986  33110               0         011121  22222


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+.+++ ... ++|+|+.|+|+..+.+.+..++++|++.++.-.|
T Consensus       131 ~dl~el-l~~-~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P  173 (211)
T 2dt5_A          131 DLLPQR-VPG-RIEIALLTVPREAAQKAADLLVAAGIKGILNFAP  173 (211)
T ss_dssp             GGHHHH-STT-TCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             HhHHHH-HHc-CCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCc
Confidence            234443 224 7999999999998889999999999975544344

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.76  E-value=0.0001  Score=66.68  Aligned_cols=96  Identities=15%  Similarity=0.061  Sum_probs=58.1

Q ss_pred             CCCeeEEEEEecCHHHHHHHHHHHcCCCc-EEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEE
Q 022491            3 GDKKIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (296)
Q Consensus         3 ~~m~i~vgI~G~G~iG~~l~r~l~~~p~~-elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~   81 (296)
                      ++|++||||+|+|.+|+.+++.|.+.... +|. +.++  +.+.+....+    .     +.        +   .   ..
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~-~~dr--~~~~~~~a~~----~-----G~--------~---~---~~   83 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDI--NPESISKAVD----L-----GI--------I---D---EG   83 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEE-EECS--CHHHHHHHHH----T-----TS--------C---S---EE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEE-EEEC--CHHHHHHHHH----C-----CC--------c---c---hh
Confidence            33457999999999999999999876532 544 4455  3322111110    0     10        0   0   01


Q ss_pred             EecCCCCC-CCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCCCC
Q 022491           82 FGFRNPEE-IPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAPSK  131 (296)
Q Consensus        82 ~~~~d~~~-i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~~~  131 (296)
                      .  .++++ .   ..++|+||.|+|.....+..+++.   +.|+  +|+|.++-
T Consensus        84 ~--~~~~~~~---~~~aDvVilavp~~~~~~vl~~l~~~l~~~~--iv~d~~Sv  130 (314)
T 3ggo_A           84 T--TSIAKVE---DFSPDFVMLSSPVRTFREIAKKLSYILSEDA--TVTDQGSV  130 (314)
T ss_dssp             E--SCTTGGG---GGCCSEEEECSCGGGHHHHHHHHHHHSCTTC--EEEECCSC
T ss_pred             c--CCHHHHh---hccCCEEEEeCCHHHHHHHHHHHhhccCCCc--EEEECCCC
Confidence            1  14444 3   358999999999987666555443   4566  88887653

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.76  E-value=3.4e-05  Score=66.09  Aligned_cols=93  Identities=12%  Similarity=0.182  Sum_probs=58.6

Q ss_pred             eEEEEEecCHHHHHHHHH-HHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARV-ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~-l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||+|+|+|.+|+.+++. ...++.++++++.|.  +++..               +         -.+++.  ++....
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~--dp~k~---------------g---------~~i~gv--~V~~~~  137 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDI--NESKI---------------G---------TEVGGV--PVYNLD  137 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEES--CTTTT---------------T---------CEETTE--EEEEGG
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeC--CHHHH---------------H---------hHhcCC--eeechh
Confidence            689999999999999994 445667999999986  33210               0         011121  222222


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +.+++-  ... |+|+.|+|+....+.+..++++|++.++.-.|.
T Consensus       138 dl~eli--~~~-D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~  179 (215)
T 2vt3_A          138 DLEQHV--KDE-SVAILTVPAVAAQSITDRLVALGIKGILNFTPA  179 (215)
T ss_dssp             GHHHHC--SSC-CEEEECSCHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             hHHHHH--HhC-CEEEEecCchhHHHHHHHHHHcCCCEEEEcCce
Confidence            333331  123 999999999888899999999999755554443

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.74  E-value=1.3e-05  Score=75.15  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=84.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCc-EEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~-elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +||+|+|+|.+|+.+++.|.+++++ ..+.+.++..+. +.++..+  ....+    ..        +.    .+ ....
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l--~~~~~----~~--------~~----~~-~~D~   62 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSI--KAKGY----GE--------ID----IT-TVDA   62 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHH--HHTTC----CC--------CE----EE-ECCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHh--hhhcC----Cc--------eE----EE-EecC
Confidence            6899999999999999999999976 455666652221 2111111  00000    00        00    00 0000


Q ss_pred             CCCCCCC--cccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCC---eEEcccC---hhccC-CCCCeEEcC
Q 022491           85 RNPEEIP--WAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP---MFVVGVN---EKEYK-PELDIVSNA  155 (296)
Q Consensus        85 ~d~~~i~--~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~---~~v~gvn---~~~l~-~~~~iIs~p  155 (296)
                      .+.+++.  ....++|+||.|+|.+.+...+..++++|+  .++|.+....|   .+.|...   .+..+ .+..++.++
T Consensus        63 ~d~~~l~~~l~~~~~DvVin~ag~~~~~~v~~a~l~~g~--~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~  140 (405)
T 4ina_A           63 DSIEELVALINEVKPQIVLNIALPYQDLTIMEACLRTGV--PYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGS  140 (405)
T ss_dssp             TCHHHHHHHHHHHCCSEEEECSCGGGHHHHHHHHHHHTC--CEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECC
T ss_pred             CCHHHHHHHHHhhCCCEEEECCCcccChHHHHHHHHhCC--CEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcC
Confidence            1111110  001148999999999888888889999998  46665332111   1223211   11111 267899999


Q ss_pred             CcchhhhHhHHHHHHhh-cC
Q 022491          156 SCTTNCLAPLAKVIHDK-FG  174 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~-~g  174 (296)
                      ||.+......+..+.++ ++
T Consensus       141 G~~PG~~~l~a~~~~~~~~~  160 (405)
T 4ina_A          141 GFDPGVTNVFCAYAQKHYFD  160 (405)
T ss_dssp             BTTTBHHHHHHHHHHHHTCS
T ss_pred             CCCccHHHHHHHHHHHhccC
Confidence            99999877777777664 44

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.72  E-value=1.6e-05  Score=73.65  Aligned_cols=95  Identities=13%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             eeEEEEEe-cCHHHHH-HH----HHHHcCCCcEEE---------EEecCCCChhhhhhcccccccCCCCcCcceeeeCCc
Q 022491            6 KIKIGING-FGRIGRL-VA----RVALQRDDVELV---------AVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK   70 (296)
Q Consensus         6 ~i~vgI~G-~G~iG~~-l~----r~l~~~p~~elv---------~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~   70 (296)
                      ++||||+| +|++|+. ++    +.+.+.+.++++         +|.++  +.+....   +...|+. +          
T Consensus         6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~--~~~~a~~---~a~~~~~-~----------   69 (383)
T 3oqb_A            6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGR--SAEKVEA---LAKRFNI-A----------   69 (383)
T ss_dssp             EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECS--SSHHHHH---HHHHTTC-C----------
T ss_pred             eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcC--CHHHHHH---HHHHhCC-C----------
Confidence            58999999 6999998 77    888877766654         68876  2221111   1111110 0          


Q ss_pred             eeEECCEEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           71 TLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        71 ~l~~~~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                               .++.  |++++ ..+.++|+|+.|||...+.+.+..++++|. .|++.-|
T Consensus        70 ---------~~~~--~~~~l-l~~~~iD~V~i~tp~~~h~~~~~~al~~Gk-~V~~EKP  115 (383)
T 3oqb_A           70 ---------RWTT--DLDAA-LADKNDTMFFDAATTQARPGLLTQAINAGK-HVYCEKP  115 (383)
T ss_dssp             ---------CEES--CHHHH-HHCSSCCEEEECSCSSSSHHHHHHHHTTTC-EEEECSC
T ss_pred             ---------cccC--CHHHH-hcCCCCCEEEECCCchHHHHHHHHHHHCCC-eEEEcCC
Confidence                     0121  34443 223579999999999999999999999995 4556433

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.71  E-value=7.3e-05  Score=65.39  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |||+|+|+|.||+.++|.   + ++|++++.+.  ..+         .. +              .       ...  .|
T Consensus        13 ~rV~i~G~GaIG~~v~~~---~-~leLv~v~~~--k~g---------el-g--------------v-------~a~--~d   53 (253)
T 1j5p_A           13 MTVLIIGMGNIGKKLVEL---G-NFEKIYAYDR--ISK---------DI-P--------------G-------VVR--LD   53 (253)
T ss_dssp             CEEEEECCSHHHHHHHHH---S-CCSEEEEECS--SCC---------CC-S--------------S-------SEE--CS
T ss_pred             ceEEEECcCHHHHHHHhc---C-CcEEEEEEec--ccc---------cc-C--------------c-------eee--CC
Confidence            799999999999999998   5 8999999761  111         00 0              0       011  25


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                      .+++-   .++|+|++|.++....++.+++|++|+.
T Consensus        54 ~d~ll---a~pD~VVe~A~~~av~e~~~~iL~aG~d   86 (253)
T 1j5p_A           54 EFQVP---SDVSTVVECASPEAVKEYSLQILKNPVN   86 (253)
T ss_dssp             SCCCC---TTCCEEEECSCHHHHHHHHHHHTTSSSE
T ss_pred             HHHHh---hCCCEEEECCCHHHHHHHHHHHHHCCCC
Confidence            66663   3899999999998888889999999995

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=97.69  E-value=4.6e-05  Score=70.22  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC---CcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD---DVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p---~~elv~i~~~   39 (296)
                      ++||||+|+|.+|+.+++.|.+++   ++++++|.+.
T Consensus         4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~   40 (358)
T 1ebf_A            4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA   40 (358)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred             eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            589999999999999999999876   7999999985

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.61  E-value=3.6e-05  Score=65.65  Aligned_cols=92  Identities=15%  Similarity=0.289  Sum_probs=61.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecCCCChh-hhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTD-YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~~~~~~-~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +.||+|+|+|.+|+.+++.+. ++.+++++++.|.  +++ ....    +..                   +|  ++++.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~--dp~~kiG~----~~i-------------------~G--vpV~~  136 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDL--DSNDLVGK----TTE-------------------DG--IPVYG  136 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEEC--TTSTTTTC----BCT-------------------TC--CBEEE
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeC--CchhccCc----eeE-------------------CC--eEEeC
Confidence            379999999999999998743 3457999999986  331 1000    011                   11  12332


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEE
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV  125 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vv  125 (296)
                      ..+.+++ ....++|+++.|+|.....+.+..+.++|+|.++
T Consensus       137 ~~dL~~~-v~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~  177 (212)
T 3keo_A          137 ISTINDH-LIDSDIETAILTVPSTEAQEVADILVKAGIKGIL  177 (212)
T ss_dssp             GGGHHHH-C-CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHH-HHHcCCCEEEEecCchhHHHHHHHHHHcCCCEEE
Confidence            2233322 1235799999999999888899999999998554

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.56  E-value=2.3e-05  Score=69.43  Aligned_cols=90  Identities=18%  Similarity=0.089  Sum_probs=47.5

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ||+||||+|+|.+|..+++.|.++  .+++.+.++  +.+....+   ...++.                      ..  
T Consensus         1 M~m~I~iIG~G~mG~~la~~l~~~--~~v~~v~~~--~~~~~~~~---~~~~g~----------------------~~--   49 (276)
T 2i76_A            1 MSLVLNFVGTGTLTRFFLECLKDR--YEIGYILSR--SIDRARNL---AEVYGG----------------------KA--   49 (276)
T ss_dssp             ---CCEEESCCHHHHHHHHTTC------CCCEECS--SHHHHHHH---HHHTCC----------------------CC--
T ss_pred             CCceEEEEeCCHHHHHHHHHHHHc--CcEEEEEeC--CHHHHHHH---HHHcCC----------------------cc--
Confidence            347999999999999999988776  666556665  32211111   010110                      00  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      .+++++   ..++|+||.|+|.....+.+.++...|.  +|+|.++
T Consensus        50 ~~~~~~---~~~~DvVilav~~~~~~~v~~~l~~~~~--ivi~~s~   90 (276)
T 2i76_A           50 ATLEKH---PELNGVVFVIVPDRYIKTVANHLNLGDA--VLVHCSG   90 (276)
T ss_dssp             CSSCCC---CC---CEEECSCTTTHHHHHTTTCCSSC--CEEECCS
T ss_pred             CCHHHH---HhcCCEEEEeCChHHHHHHHHHhccCCC--EEEECCC
Confidence            134443   2478999999999876555544322333  6777653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.38  E-value=0.0003  Score=61.45  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=56.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||+|+|+|.+|+.+++.|.+.. .+++.+.++  +.+....+   ...+            +  +       .+.  .+
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g-~~~v~~~~~--~~~~~~~~---~~~~------------g--~-------~~~--~~   61 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKG-FRIVQVYSR--TEESAREL---AQKV------------E--A-------EYT--TD   61 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHT-CCEEEEECS--SHHHHHHH---HHHT------------T--C-------EEE--SC
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCC-CeEEEEEeC--CHHHHHHH---HHHc------------C--C-------cee--CC
Confidence            68999999999999999988764 566777776  33221111   1100            0  1       111  13


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHH---CCCCeEEeeCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK---GGAKKVVISAPS  130 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~---~G~k~vvid~~~  130 (296)
                      +++.   ..++|+||.|+|.....+.+..+.+   .|.  +++|.++
T Consensus        62 ~~~~---~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~--ivv~~s~  103 (266)
T 3d1l_A           62 LAEV---NPYAKLYIVSLKDSAFAELLQGIVEGKREEA--LMVHTAG  103 (266)
T ss_dssp             GGGS---CSCCSEEEECCCHHHHHHHHHHHHTTCCTTC--EEEECCT
T ss_pred             HHHH---hcCCCEEEEecCHHHHHHHHHHHHhhcCCCc--EEEECCC
Confidence            4333   2479999999998866666655543   444  7888754

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.33  E-value=0.00033  Score=62.50  Aligned_cols=87  Identities=22%  Similarity=0.222  Sum_probs=60.6

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||+|+|+ |++|+.+++.+.++ .+++++..++ ...+        ...+                   |  ++++. 
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p-~~~g--------~~~~-------------------G--~~vy~-   54 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTP-GKGG--------TTHL-------------------G--LPVFN-   54 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECT-TCTT--------CEET-------------------T--EEEES-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCC-Cccc--------ceeC-------------------C--eeccC-
Confidence            379999999 99999999998887 4787766655 1110        0000                   1  12332 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                       +.++++- ..++|+++.|+|...+.+.+.+++++|++.+|+
T Consensus        55 -sl~el~~-~~~~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi   94 (288)
T 2nu8_A           55 -TVREAVA-ATGATASVIYVPAPFCKDSILEAIDAGIKLIIT   94 (288)
T ss_dssp             -SHHHHHH-HHCCCEEEECCCGGGHHHHHHHHHHTTCSEEEE
T ss_pred             -CHHHHhh-cCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence             3334320 127999999999999999999999999986444

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.16  E-value=0.0008  Score=59.49  Aligned_cols=94  Identities=14%  Similarity=0.081  Sum_probs=54.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      ++||+|+|+|.+|..+++.|.++. ..++. +.++  +.+....+.   . +     +.        .   .   ...  
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~--~~~~~~~~~---~-~-----g~--------~---~---~~~--   57 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIV-GYNR--SDRSRDIAL---E-R-----GI--------V---D---EAT--   57 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EECS--SHHHHHHHH---H-T-----TS--------C---S---EEE--
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEE-EEcC--CHHHHHHHH---H-c-----CC--------c---c---ccc--
Confidence            379999999999999999988653 45654 4454  332111110   1 1     10        0   0   011  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHC--CCCeEEeeCCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG--GAKKVVISAPS  130 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~--G~k~vvid~~~  130 (296)
                      .++++.   ..++|+||.|+|.....+.+..+...  ....+|+|.++
T Consensus        58 ~~~~~~---~~~aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           58 ADFKVF---AALADVIILAVPIKKTIDFIKILADLDLKEDVIITDAGS  102 (290)
T ss_dssp             SCTTTT---GGGCSEEEECSCHHHHHHHHHHHHTSCCCTTCEEECCCS
T ss_pred             CCHHHh---hcCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEEECCC
Confidence            134443   24789999999987776666665432  11237776544

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.14  E-value=0.0013  Score=58.04  Aligned_cols=89  Identities=15%  Similarity=0.139  Sum_probs=54.9

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ||+||+|+|+ |.+|..+++.|.+.. .++. +.++  +.+....+.   . ++              +.       .  
T Consensus        10 mmm~I~iIG~tG~mG~~la~~l~~~g-~~V~-~~~r--~~~~~~~~~---~-~g--------------~~-------~--   58 (286)
T 3c24_A           10 GPKTVAILGAGGKMGARITRKIHDSA-HHLA-AIEI--APEGRDRLQ---G-MG--------------IP-------L--   58 (286)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHSS-SEEE-EECC--SHHHHHHHH---H-TT--------------CC-------C--
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHhCC-CEEE-EEEC--CHHHHHHHH---h-cC--------------CC-------c--
Confidence            4579999999 999999999998765 5665 4454  332211111   1 11              10       0  


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHH---CCCCeEEeeCCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK---GGAKKVVISAPS  130 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~---~G~k~vvid~~~  130 (296)
                       .++.+.   ..++|+||.|+|.....+..+.+..   .|.  +++|.+.
T Consensus        59 -~~~~~~---~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~--ivv~~s~  102 (286)
T 3c24_A           59 -TDGDGW---IDEADVVVLALPDNIIEKVAEDIVPRVRPGT--IVLILDA  102 (286)
T ss_dssp             -CCSSGG---GGTCSEEEECSCHHHHHHHHHHHGGGSCTTC--EEEESCS
T ss_pred             -CCHHHH---hcCCCEEEEcCCchHHHHHHHHHHHhCCCCC--EEEECCC
Confidence             022332   2579999999998776665555432   354  8888654

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=97.13  E-value=0.0005  Score=63.69  Aligned_cols=114  Identities=13%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCC---ceeE--
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTLL--   73 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~---~~l~--   73 (296)
                      |+. | +||+|+|+ |.||+.+++.+.+||+ ++++++... .+.+.+....  ....++    .+...+.   ..+.  
T Consensus         1 m~~-m-~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag-~ni~~l~~~~--~~f~~~----~v~v~d~~~~~~l~~~   71 (388)
T 1r0k_A            1 MSQ-P-RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN-RNVKDLADAA--KRTNAK----RAVIADPSLYNDLKEA   71 (388)
T ss_dssp             -CC-C-EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES-SCHHHHHHHH--HHTTCS----EEEESCGGGHHHHHHH
T ss_pred             CCC-c-eEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcC-CCHHHHHHHH--HHcCCc----EEEEcChHHHHHHHHH
Confidence            664 3 89999999 9999999999999997 999999433 3443222111  110010    0000000   0000  


Q ss_pred             ECCEEEEEEe-cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           74 FGEKPVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        74 ~~~~~i~~~~-~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +.+..+.++. ..+..++ .... +|+|++|++.....+.+.+++++|. .+++
T Consensus        72 l~~~~~~v~~g~~~~~el-~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK-~Vvl  122 (388)
T 1r0k_A           72 LAGSSVEAAAGADALVEA-AMMG-ADWTMAAIIGCAGLKATLAAIRKGK-TVAL  122 (388)
T ss_dssp             TTTCSSEEEESHHHHHHH-HTSC-CSEEEECCCSGGGHHHHHHHHHTTS-EEEE
T ss_pred             hccCCcEEEeCccHHHHH-HcCC-CCEEEEeCCCHHHHHHHHHHHHCCC-EEEE
Confidence            0000011111 1111122 1124 8999999977667777888899995 3444

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.10  E-value=0.0018  Score=51.18  Aligned_cols=84  Identities=20%  Similarity=0.344  Sum_probs=59.7

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|||+|+    |.+|..+++.|.+.. +++..++ +  ..+         ...                   |  ++++
T Consensus        15 ~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vn-p--~~~---------~i~-------------------G--~~~~   60 (138)
T 1y81_A           15 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVN-P--NYD---------EIE-------------------G--LKCY   60 (138)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEEC-T--TCS---------EET-------------------T--EECB
T ss_pred             CeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeC-C--CCC---------eEC-------------------C--eeec
Confidence            68999999    999999999998875 4755554 3  111         100                   1  1122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .  ++++++   .++|+|+.|+|.....+.+.+++++|++.++++.+
T Consensus        61 ~--s~~el~---~~vDlvii~vp~~~v~~v~~~~~~~g~~~i~~~~~  102 (138)
T 1y81_A           61 R--SVRELP---KDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPG  102 (138)
T ss_dssp             S--SGGGSC---TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred             C--CHHHhC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCc
Confidence            1  345553   47999999999887788888888999998888664

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.07  E-value=0.00024  Score=60.66  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+||+|+|+|.+|..+++.|.+.. .++..+.++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g-~~V~~v~~r   55 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQ-IPAIIANSR   55 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTT-CCEEEECTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEEEEECC
Confidence            479999999999999999998764 566665666

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=96.95  E-value=0.01  Score=50.79  Aligned_cols=66  Identities=26%  Similarity=0.324  Sum_probs=50.3

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +|-+|+|+ |++|+.+.++. +.++++|++..++  ..          +                               
T Consensus        13 ~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~--~~----------~-------------------------------   48 (228)
T 1vm6_A           13 MKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDV--NG----------V-------------------------------   48 (228)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEET--TE----------E-------------------------------
T ss_pred             ceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcC--CC----------c-------------------------------
Confidence            67899999 99999998865 6677999887654  10          0                               


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                        +++    .++|+|||-|-.....+.++.+++.|.+
T Consensus        49 --~~l----~~~DVvIDFT~P~a~~~~~~~~~~~g~~   79 (228)
T 1vm6_A           49 --EEL----DSPDVVIDFSSPEALPKTVDLCKKYRAG   79 (228)
T ss_dssp             --EEC----SCCSEEEECSCGGGHHHHHHHHHHHTCE
T ss_pred             --ccc----cCCCEEEECCCHHHHHHHHHHHHHcCCC
Confidence              011    1579999877777888889999999985

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.86  E-value=0.0021  Score=57.34  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=25.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |++||||+|+|++|..+++.|.+.. .++... ++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G-~~V~~~-dr   38 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAG-LSTWGA-DL   38 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CeEEEE-EC
Confidence            3479999999999999999998875 455444 55

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.84  E-value=0.00088  Score=60.24  Aligned_cols=93  Identities=15%  Similarity=0.102  Sum_probs=54.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|+|++|..+++.|.+.. .+-|.+.++..+.+.... +  ..             .|  +.       ..  .
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G-~~~V~~~dr~~~~~~~~~-~--~~-------------~g--~~-------~~--~   75 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAG-AIDMAAYDAASAESWRPR-A--EE-------------LG--VS-------CK--A   75 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHS-CCEEEEECSSCHHHHHHH-H--HH-------------TT--CE-------EC--S
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC-CCeEEEEcCCCCHHHHHH-H--HH-------------CC--CE-------Ee--C
Confidence            479999999999999999998765 323445555211221111 1  00             01  10       11  1


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHH---CCCCeEEeeCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK---GGAKKVVISAPSK  131 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~---~G~k~vvid~~~~  131 (296)
                      ++++.   ..++|+||.|+|.....+.+..+.+   .|.  ++||.++-
T Consensus        76 ~~~e~---~~~aDvVi~~vp~~~~~~~~~~l~~~l~~~~--ivvd~st~  119 (312)
T 3qsg_A           76 SVAEV---AGECDVIFSLVTAQAALEVAQQAGPHLCEGA--LYADFTSC  119 (312)
T ss_dssp             CHHHH---HHHCSEEEECSCTTTHHHHHHHHGGGCCTTC--EEEECCCC
T ss_pred             CHHHH---HhcCCEEEEecCchhHHHHHHhhHhhcCCCC--EEEEcCCC
Confidence            23332   2478999999999877666655543   444  88887653

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.79  E-value=0.0073  Score=52.62  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=27.1

Q ss_pred             CCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         4 ~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .||+||.|.|+|++|+.+++.|.++. .+++++.
T Consensus         3 ~m~~~ilVtGaG~iG~~l~~~L~~~g-~~V~~~~   35 (286)
T 3ius_A            3 AMTGTLLSFGHGYTARVLSRALAPQG-WRIIGTS   35 (286)
T ss_dssp             --CCEEEEETCCHHHHHHHHHHGGGT-CEEEEEE
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHHCC-CEEEEEE
Confidence            46689999999999999999998875 5777765

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.79  E-value=0.0033  Score=50.08  Aligned_cols=85  Identities=15%  Similarity=0.169  Sum_probs=58.9

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|||+|+    |.+|..+++.|.+.. +++..++ +....         +..                   .|  ++++
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~G-~~v~~vn-p~~~g---------~~i-------------------~G--~~~~   61 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQG-YHVIPVS-PKVAG---------KTL-------------------LG--QQGY   61 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHHT-CCEEEEC-SSSTT---------SEE-------------------TT--EECC
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHCC-CEEEEeC-Ccccc---------ccc-------------------CC--eecc
Confidence            57999999    789999999988765 4654443 31100         010                   01  1122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      .  ++++++   ..+|+|+.|+|.....+.+.++.++|+|.++++.
T Consensus        62 ~--sl~el~---~~~Dlvii~vp~~~v~~v~~~~~~~g~~~i~i~~  102 (145)
T 2duw_A           62 A--TLADVP---EKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQL  102 (145)
T ss_dssp             S--STTTCS---SCCSEEECCSCSTHHHHHHHHHHHHTCCEEECCT
T ss_pred             C--CHHHcC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            2  456663   4799999999988888888888889999888864

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.76  E-value=0.0035  Score=49.87  Aligned_cols=83  Identities=22%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|+|+|+    |.+|..+++.|.++. +++..++-. .           ++..                   |  ++++
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vnp~-~-----------~~i~-------------------G--~~~y   68 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPK-Y-----------EEVL-------------------G--RKCY   68 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT-C-----------SEET-------------------T--EECB
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEECCC-C-----------CeEC-------------------C--eecc
Confidence            68999999    699999999998876 476555422 1           1110                   1  1122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      .  ++++++   ..+|+|+.|+|.....+.+.++.++|+|.+++..
T Consensus        69 ~--sl~~l~---~~vDlvvi~vp~~~~~~vv~~~~~~gi~~i~~~~  109 (144)
T 2d59_A           69 P--SVLDIP---DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQY  109 (144)
T ss_dssp             S--SGGGCS---SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEECT
T ss_pred             C--CHHHcC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEECC
Confidence            1  345553   4799999999998888899999999999777753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.68  E-value=0.0039  Score=54.75  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||+|+|+|.+|..+++.|.+.. ..++.. .++  +.+.....   .. ++              +.     ....  .
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~-~d~--~~~~~~~~---~~-~g--------------~~-----~~~~--~   53 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYG-YDI--NPESISKA---VD-LG--------------II-----DEGT--T   53 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEE-ECS--CHHHHHHH---HH-TT--------------SC-----SEEE--S
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEE-EeC--CHHHHHHH---HH-CC--------------Cc-----cccc--C
Confidence            58999999999999999998764 235544 455  33211111   00 11              00     0011  1


Q ss_pred             CCCCCCcccC-CCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKT-GAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~-~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~~~  130 (296)
                      ++++.   .. ++|+||.|+|.....+.+..+   ++.+.  ++++.++
T Consensus        54 ~~~~~---~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~--iv~~~~~   97 (281)
T 2g5c_A           54 SIAKV---EDFSPDFVMLSSPVRTFREIAKKLSYILSEDA--TVTDQGS   97 (281)
T ss_dssp             CGGGG---GGTCCSEEEECSCHHHHHHHHHHHHHHSCTTC--EEEECCS
T ss_pred             CHHHH---hcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCc--EEEECCC
Confidence            33332   25 799999999987666655544   33455  7776543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.66  E-value=0.00072  Score=58.78  Aligned_cols=31  Identities=26%  Similarity=0.457  Sum_probs=25.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|+.+++.|.+.+ .+ +.+.++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~-v~~~~~   34 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HE-LIISGS   34 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CE-EEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-Ce-EEEECC
Confidence            69999999999999999998876 33 466665

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.63  E-value=0.0012  Score=58.52  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=25.6

Q ss_pred             CCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         4 ~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .|++||+|+|+|.+|..+++.|.++. .++ .+.++
T Consensus         3 ~M~m~i~iiG~G~~G~~~a~~l~~~g-~~V-~~~~~   36 (299)
T 1vpd_A            3 AMTMKVGFIGLGIMGKPMSKNLLKAG-YSL-VVSDR   36 (299)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTT-CEE-EEECS
T ss_pred             cccceEEEECchHHHHHHHHHHHhCC-CEE-EEEeC
Confidence            35579999999999999999998775 565 45555

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.62  E-value=0.0025  Score=56.78  Aligned_cols=86  Identities=19%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||+|+|+ |+.|+.+++.+.++ .+++++...+.. .+        ...            .       |  ++++.  
T Consensus         8 ~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~-~g--------~~i------------~-------G--~~vy~--   54 (288)
T 1oi7_A            8 TRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGK-GG--------MEV------------L-------G--VPVYD--   54 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTC-TT--------CEE------------T-------T--EEEES--
T ss_pred             CEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCC-CC--------ceE------------C-------C--EEeeC--
Confidence            79999999 99999999998876 577765444411 11        000            0       1  22332  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +.++++- ..++|++++++|.....+.+.+++++|++.+|+
T Consensus        55 sl~el~~-~~~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi   94 (288)
T 1oi7_A           55 TVKEAVA-HHEVDASIIFVPAPAAADAALEAAHAGIPLIVL   94 (288)
T ss_dssp             SHHHHHH-HSCCSEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CHHHHhh-cCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence            2333320 127899999999999999999999999985554

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.54  E-value=0.005  Score=55.44  Aligned_cols=95  Identities=18%  Similarity=0.048  Sum_probs=55.2

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |++||||+|+|++|..+++.|.+....++. +.++..+ .+......  +.    +.      ..|  +        .  
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~-~~dr~~~~~~~~~~~~--~~----~~------~~g--~--------~--   77 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGGRNAARLA-AYDLRFNDPAASGALR--AR----AA------ELG--V--------E--   77 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCSEEE-EECGGGGCTTTHHHHH--HH----HH------HTT--C--------E--
T ss_pred             cCCeEEEECccHHHHHHHHHHHHcCCCeEE-EEeCCCccccchHHHH--HH----HH------HCC--C--------C--
Confidence            457999999999999999999887524554 4454221 00000000  00    00      011  0        0  


Q ss_pred             cC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHH---CCCCeEEeeCCC
Q 022491           84 FR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK---GGAKKVVISAPS  130 (296)
Q Consensus        84 ~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~---~G~k~vvid~~~  130 (296)
                       . ++++.   ..++|+||.|+|.....+.+..+.+   .|.  ++||.++
T Consensus        78 -~~s~~e~---~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~--ivv~~st  122 (317)
T 4ezb_A           78 -PLDDVAG---IACADVVLSLVVGAATKAVAASAAPHLSDEA--VFIDLNS  122 (317)
T ss_dssp             -EESSGGG---GGGCSEEEECCCGGGHHHHHHHHGGGCCTTC--EEEECCS
T ss_pred             -CCCHHHH---HhcCCEEEEecCCHHHHHHHHHHHhhcCCCC--EEEECCC
Confidence             1 23333   2578999999999877666655433   454  7888764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.44  E-value=0.0079  Score=50.49  Aligned_cols=34  Identities=35%  Similarity=0.375  Sum_probs=26.8

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |+.+  +||-|.|+ |++|+.+++.|.+++ .+++++.
T Consensus         1 M~~m--~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~   35 (227)
T 3dhn_A            1 MEKV--KKIVLIGASGFVGSALLNEALNRG-FEVTAVV   35 (227)
T ss_dssp             --CC--CEEEEETCCHHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CCCC--CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEE
Confidence            6643  68999999 999999999999886 6776664

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=96.43  E-value=0.0042  Score=48.59  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=56.4

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +.|+.|+|+|..|+.+++.+.+++.++++++.+.  +...      ...                  .+.|  ++++...
T Consensus         4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~--~~~~------~g~------------------~i~g--~pV~g~~   55 (141)
T 3nkl_A            4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDD--DRKK------HKT------------------TMQG--ITIYRPK   55 (141)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECS--CGGG------TTC------------------EETT--EEEECGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEEC--Cccc------CCC------------------EecC--eEEECHH
Confidence            3689999999999999999998888999999876  2210      000                  0111  1233211


Q ss_pred             CCCCCCcccCCCcEEEEccCCccC---HHHHHHHHHCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTD---KDKAAAHLKGGAK  122 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~---~~~~~~~l~~G~k  122 (296)
                      +..++ ....++|.||.|.|....   .+.+..+.+.|++
T Consensus        56 ~l~~~-~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~   94 (141)
T 3nkl_A           56 YLERL-IKKHCISTVLLAVPSASQVQKKVIIESLAKLHVE   94 (141)
T ss_dssp             GHHHH-HHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCE
T ss_pred             HHHHH-HHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCe
Confidence            11111 012478999999997544   4566677788985

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.42  E-value=0.0037  Score=55.80  Aligned_cols=86  Identities=24%  Similarity=0.282  Sum_probs=58.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .+++|+|+ |+.|+.+++.+.++ .+++++-.++ ...+        ...+                   |  ++++.  
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~-g~~~V~~VnP-~~~g--------~~i~-------------------G--~~vy~--   60 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLEC-GTKIVGGVTP-GKGG--------QNVH-------------------G--VPVFD--   60 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHT-TCCEEEEECT-TCTT--------CEET-------------------T--EEEES--
T ss_pred             CEEEEECCCCCHHHHHHHHHHhC-CCeEEEEeCC-CCCC--------ceEC-------------------C--EeeeC--
Confidence            68999999 99999999999887 4666544334 1110        0101                   1  22332  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +.++++- ..++|+++.++|...+.+.+.+++++|++.+|+
T Consensus        61 sl~el~~-~~~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi  100 (294)
T 2yv1_A           61 TVKEAVK-ETDANASVIFVPAPFAKDAVFEAIDAGIELIVV  100 (294)
T ss_dssp             SHHHHHH-HHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CHHHHhh-cCCCCEEEEccCHHHHHHHHHHHHHCCCCEEEE
Confidence            3344420 117899999999999999999999999985444

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.40  E-value=0.002  Score=57.99  Aligned_cols=32  Identities=25%  Similarity=0.222  Sum_probs=25.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||||+|+|++|..+++.|.+.. .++.. .++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G-~~V~~-~dr   62 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAG-YALQV-WNR   62 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTT-CEEEE-ECS
T ss_pred             CCEEEEECccHHHHHHHHHHHhCC-CeEEE-EcC
Confidence            469999999999999999998775 56544 455

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.39  E-value=0.0013  Score=57.00  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=26.1

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCC--cEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDD--VELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~--~elv~i~~~   39 (296)
                      |++||+|+|+|.+|..+++.|.+...  .+-+.+.++
T Consensus         1 M~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r   37 (247)
T 3gt0_A            1 MDKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDL   37 (247)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred             CCCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeC
Confidence            34789999999999999999987642  223345555

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.37  E-value=0.0068  Score=46.90  Aligned_cols=82  Identities=18%  Similarity=0.111  Sum_probs=60.2

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|+|+|+    +..|..+++.|.++. +++..||-. .           ++..                   |.  +.+
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g-~~V~pVnP~-~-----------~~i~-------------------G~--~~y   50 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHG-HEFIPVGRK-K-----------GEVL-------------------GK--TII   50 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHT-CCEEEESSS-C-----------SEET-------------------TE--ECB
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCC-CeEEEECCC-C-----------CcCC-------------------Ce--ecc
Confidence            57999999    578999999998876 488888633 1           1111                   10  112


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      .  +..+++   . +|+|+.++|.....+.++++.+.|+|.++++.
T Consensus        51 ~--sl~dlp---~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~~   90 (122)
T 3ff4_A           51 N--ERPVIE---G-VDTVTLYINPQNQLSEYNYILSLKPKRVIFNP   90 (122)
T ss_dssp             C--SCCCCT---T-CCEEEECSCHHHHGGGHHHHHHHCCSEEEECT
T ss_pred             C--ChHHCC---C-CCEEEEEeCHHHHHHHHHHHHhcCCCEEEECC
Confidence            1  456664   4 99999999999999999999999999877754

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.36  E-value=0.0058  Score=48.37  Aligned_cols=86  Identities=13%  Similarity=0.061  Sum_probs=59.4

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|+|+|+    |..|..+++.|.++. +++..++ +....         ++.                   .|  ++++
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~G-~~v~~vn-p~~~~---------~~i-------------------~G--~~~~   61 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVN-PRFQG---------EEL-------------------FG--EEAV   61 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEEC-GGGTT---------SEE-------------------TT--EECB
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHCC-CEEEEeC-CCccc---------CcC-------------------CC--EEec
Confidence            58999999    799999999998876 4655553 20001         111                   01  1122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .  ++++++   ..+|+++.|+|.....+.++++.++|+|.+++..+
T Consensus        62 ~--sl~el~---~~vDlavi~vp~~~~~~v~~~~~~~gi~~i~~~~g  103 (140)
T 1iuk_A           62 A--SLLDLK---EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSG  103 (140)
T ss_dssp             S--SGGGCC---SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTT
T ss_pred             C--CHHHCC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            2  345553   47999999999988888888999999998887643

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.36  E-value=0.0059  Score=54.58  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=58.3

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +.|++|+|+ |+.|+.+++.+.++ .+++++..++ ...+        +..+                   |  ++++. 
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP-~~~g--------~~i~-------------------G--~~vy~-   60 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTP-GKGG--------SEVH-------------------G--VPVYD-   60 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECT-TCTT--------CEET-------------------T--EEEES-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCC-CCCC--------ceEC-------------------C--EeeeC-
Confidence            368999999 99999999998886 4666544434 1110        1111                   1  22332 


Q ss_pred             CCCCCCCcccCC-CcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           85 RNPEEIPWAKTG-AEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        85 ~d~~~i~~~~~~-~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                       +.++++- ..+ +|++++++|.....+.+.+++++|++.+|+
T Consensus        61 -sl~el~~-~~~~~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi  101 (297)
T 2yv2_A           61 -SVKEALA-EHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVV  101 (297)
T ss_dssp             -SHHHHHH-HCTTCCEEEECCCGGGHHHHHHHHHHTTCSEEEE
T ss_pred             -CHHHHhh-cCCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence             3344420 014 899999999999999999999999985554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.35  E-value=0.0068  Score=52.60  Aligned_cols=89  Identities=16%  Similarity=0.134  Sum_probs=52.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |||+|+|+|.+|..+++.|.+.. .++.. .++..+.+....+.   .             .|  +       .    .+
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g-~~V~~-~~~~~~~~~~~~~~---~-------------~g--~-------~----~~   49 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRG-VEVVT-SLEGRSPSTIERAR---T-------------VG--V-------T----ET   49 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEE-CCTTCCHHHHHHHH---H-------------HT--C-------E----EC
T ss_pred             CeEEEEechHHHHHHHHHHHHCC-CeEEE-eCCccCHHHHHHHH---H-------------CC--C-------c----CC
Confidence            37999999999999999998764 46554 44411222111110   0             01  1       0    13


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +++.   ..++|+||.|+|.....+.+..+.+...+ +++|.++
T Consensus        50 ~~~~---~~~aDvvi~~v~~~~~~~~~~~~~~~~~~-~vi~~s~   89 (264)
T 1i36_A           50 SEED---VYSCPVVISAVTPGVALGAARRAGRHVRG-IYVDINN   89 (264)
T ss_dssp             CHHH---HHTSSEEEECSCGGGHHHHHHHHHTTCCS-EEEECSC
T ss_pred             HHHH---HhcCCEEEEECCCHHHHHHHHHHHHhcCc-EEEEccC
Confidence            3332   24789999999997666666555543333 6777643

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=96.34  E-value=0.005  Score=56.34  Aligned_cols=110  Identities=13%  Similarity=0.128  Sum_probs=62.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||+|+|+ |.||...++.+.+|+.++++++... .+.+.++...  ....+++    +...+.....-.-+. ...-..
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~-~n~~~l~~q~--~~f~p~~----v~v~~~~~~~~~l~~-~~~G~~   75 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFH-SNLELAFKIV--KEFNVKN----VAITGDVEFEDSSIN-VWKGSH   75 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEES-SCHHHHHHHH--HHHTCCE----EEECSSCCCCCSSSE-EEESTT
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEcc-CCHHHHHHHH--HHcCCCE----EEEccHHHHHHHHHH-HccCHH
Confidence            78999998 9999999999999977999999654 5655433321  1111111    000000000000000 000000


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      ...++ ....++|+|+.|++.+....-.-.++++|. ++.+
T Consensus        76 ~l~el-~~~~~~D~Vv~AivG~aGL~ptlaAi~aGK-~vaL  114 (376)
T 3a06_A           76 SIEEM-LEALKPDITMVAVSGFSGLRAVLASLEHSK-RVCL  114 (376)
T ss_dssp             HHHHH-HHHHCCSEEEECCCSTTHHHHHHHHHHHCS-EEEE
T ss_pred             HHHHH-hcCCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEE
Confidence            00111 012468999999999988888888889995 3545

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.33  E-value=0.0081  Score=53.57  Aligned_cols=35  Identities=31%  Similarity=0.460  Sum_probs=25.5

Q ss_pred             CCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         3 ~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ..|+.|||+||.|++|..+++.|.++. +++. +.++
T Consensus         2 ~~Ms~kIgfIGLG~MG~~mA~~L~~~G-~~V~-v~dr   36 (297)
T 4gbj_A            2 NAMSEKIAFLGLGNLGTPIAEILLEAG-YELV-VWNR   36 (297)
T ss_dssp             --CCCEEEEECCSTTHHHHHHHHHHTT-CEEE-EC--
T ss_pred             CCCCCcEEEEecHHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            346679999999999999999998875 5544 4454

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.18  E-value=0.0053  Score=54.23  Aligned_cols=91  Identities=16%  Similarity=0.125  Sum_probs=52.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +||||+|+|.+|..+++.|.+... .+-+.+.++  +.+.+..+   ...++              +       .+..  
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr--~~~~~~~l---~~~~g--------------i-------~~~~--   55 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNR--SLDKLDFF---KEKCG--------------V-------HTTQ--   55 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECS--SSHHHHHH---HHTTC--------------C-------EEES--
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeC--CHHHHHHH---HHHcC--------------C-------EEeC--
Confidence            689999999999999999987641 223445565  22211111   11111              1       1111  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHH----HHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH----LKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~----l~~G~k~vvid~~~  130 (296)
                      +..+.   ..++|+||.|++.....+..+++    +..+.  +++|..+
T Consensus        56 ~~~~~---~~~aDvVilav~p~~~~~vl~~l~~~~l~~~~--iiiS~~a   99 (280)
T 3tri_A           56 DNRQG---ALNADVVVLAVKPHQIKMVCEELKDILSETKI--LVISLAV   99 (280)
T ss_dssp             CHHHH---HSSCSEEEECSCGGGHHHHHHHHHHHHHTTTC--EEEECCT
T ss_pred             ChHHH---HhcCCeEEEEeCHHHHHHHHHHHHhhccCCCe--EEEEecC
Confidence            22222   24789999999886666555444    34443  6777543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.17  E-value=0.0034  Score=56.25  Aligned_cols=32  Identities=16%  Similarity=0.395  Sum_probs=25.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+||||+|+|.+|..+++.|.+.. .++.. .++
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G-~~V~~-~dr   52 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNG-FKVTV-WNR   52 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTT-CEEEE-ECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC-CeEEE-EeC
Confidence            379999999999999999998875 45544 455

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.17  E-value=0.0046  Score=54.56  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||||+|+|++|..+++.|.++. .++. +.++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G-~~V~-~~dr   32 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAG-CSVT-IWNR   32 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC-CeEE-EEcC
Confidence            58999999999999999998875 5655 4455

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.15  E-value=0.0093  Score=52.16  Aligned_cols=89  Identities=19%  Similarity=0.186  Sum_probs=52.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |||+|+|+|.+|..+++.|.+.. .++..+ ++  +.+....+   .. +     +         +.  .   ...  .+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~-~~--~~~~~~~~---~~-~-----g---------~~--~---~~~--~~   51 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRG-HYLIGV-SR--QQSTCEKA---VE-R-----Q---------LV--D---EAG--QD   51 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS--CHHHHHHH---HH-T-----T---------SC--S---EEE--SC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC-CEEEEE-EC--CHHHHHHH---Hh-C-----C---------CC--c---ccc--CC
Confidence            37999999999999999998765 465444 54  33221111   11 0     0         00  0   011  13


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHH---CCCCeEEeeCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK---GGAKKVVISAPS  130 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~---~G~k~vvid~~~  130 (296)
                      ++++    .++|+||.|+|.....+.+..+..   .|.  +|+|.++
T Consensus        52 ~~~~----~~~D~vi~av~~~~~~~~~~~l~~~~~~~~--~vv~~~~   92 (279)
T 2f1k_A           52 LSLL----QTAKIIFLCTPIQLILPTLEKLIPHLSPTA--IVTDVAS   92 (279)
T ss_dssp             GGGG----TTCSEEEECSCHHHHHHHHHHHGGGSCTTC--EEEECCS
T ss_pred             HHHh----CCCCEEEEECCHHHHHHHHHHHHhhCCCCC--EEEECCC
Confidence            3332    378999999998766666555432   344  7777643

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.14  E-value=0.0048  Score=54.95  Aligned_cols=77  Identities=21%  Similarity=0.213  Sum_probs=49.7

Q ss_pred             CeeEEEEEe-cCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G-~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |+.||+|+| +|.+|..+++.|.+.. .++..+ ++  +..        .                              
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G-~~V~~~-~~--~~~--------~------------------------------   57 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASG-YPISIL-DR--EDW--------A------------------------------   57 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEE-CT--TCG--------G------------------------------
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCC-CeEEEE-EC--Ccc--------c------------------------------
Confidence            446899999 8999999999998764 344333 33  110        0                              


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAPS  130 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~~  130 (296)
                        ++++.   ..++|+||.|+|.....+.+..+.   +.++  +|+|.++
T Consensus        58 --~~~~~---~~~aDvVilavp~~~~~~vl~~l~~~l~~~~--iv~~~~s  100 (298)
T 2pv7_A           58 --VAESI---LANADVVIVSVPINLTLETIERLKPYLTENM--LLADLTS  100 (298)
T ss_dssp             --GHHHH---HTTCSEEEECSCGGGHHHHHHHHGGGCCTTS--EEEECCS
T ss_pred             --CHHHH---hcCCCEEEEeCCHHHHHHHHHHHHhhcCCCc--EEEECCC
Confidence              00011   136899999999987766666543   3454  7777654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.14  E-value=0.0051  Score=53.30  Aligned_cols=32  Identities=13%  Similarity=0.205  Sum_probs=24.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..+++.|.+....+ +.+.++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~-v~~~~r   32 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYR-IYIANR   32 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCE-EEEECS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCe-EEEECC
Confidence            37999999999999999987654233 445555

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.11  E-value=0.006  Score=47.20  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=24.4

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |.+.++.+|.|+|+|.+|+.+++.|.+.. .+++.+
T Consensus         1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~g-~~v~~~   35 (144)
T 2hmt_A            1 MGRIKNKQFAVIGLGRFGGSIVKELHRMG-HEVLAV   35 (144)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTT-CCCEEE
T ss_pred             CCCCcCCcEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            44433357999999999999999998765 455544

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.09  E-value=0.0013  Score=51.91  Aligned_cols=31  Identities=23%  Similarity=0.143  Sum_probs=26.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|+.+++.|... .++ +.+.++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~-g~~-v~v~~r   52 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYP-QYK-VTVAGR   52 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTT-TCE-EEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhC-CCE-EEEEcC
Confidence            6899999999999999988875 478 777766

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.09  E-value=0.016  Score=48.39  Aligned_cols=29  Identities=31%  Similarity=0.390  Sum_probs=25.4

Q ss_pred             EEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            8 KIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ||.|.|+ |.+|+.+++.|.++. .+++++.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~   31 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGA   31 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSS-CEEEEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEE
Confidence            7999999 999999999999875 6777764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.08  E-value=0.012  Score=50.03  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ||++|-|.|+ |.+|+.+++.|.+++..+++.+.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~   55 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFA   55 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEE
Confidence            4578999999 99999999999988756776664

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.07  E-value=0.0059  Score=53.37  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=26.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||-|.|+ |.+|+.+++.|.+.+..++.++.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~   32 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGV   32 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEE
Confidence            36999999 99999999999887667777775

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.06  E-value=0.006  Score=56.02  Aligned_cols=31  Identities=35%  Similarity=0.519  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||||+|+|.+|..+++.|.++. .++. +.++
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G-~~V~-v~dr   53 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGG-HECV-VYDL   53 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CEEEEECchHHHHHHHHHHHhCC-CEEE-EEeC
Confidence            79999999999999999999876 5554 4455

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.98  E-value=0.0048  Score=54.63  Aligned_cols=35  Identities=34%  Similarity=0.490  Sum_probs=25.5

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |++.  +||+|+|+|.+|..+++.|.+.. .++. +.++
T Consensus         1 M~~~--~~i~iiG~G~~G~~~a~~l~~~g-~~V~-~~~~   35 (301)
T 3cky_A            1 MEKS--IKIGFIGLGAMGKPMAINLLKEG-VTVY-AFDL   35 (301)
T ss_dssp             ---C--CEEEEECCCTTHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CCCC--CEEEEECccHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            5643  68999999999999999998764 5654 4555

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.97  E-value=0.0053  Score=54.91  Aligned_cols=32  Identities=19%  Similarity=0.471  Sum_probs=25.4

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||||+|+|.+|..+++.|.+.. .++.. .++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G-~~V~~-~dr   40 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQG-KRVAI-WNR   40 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTT-CCEEE-ECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence            478999999999999999998765 45543 455

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.95  E-value=0.018  Score=45.70  Aligned_cols=30  Identities=37%  Similarity=0.499  Sum_probs=25.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|.|+|+|.+|+.+++.|.... .+++.+.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g-~~V~vid   49 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSG-HSVVVVD   49 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            68999999999999999998765 4666653

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.93  E-value=0.011  Score=52.49  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=25.4

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||||+|+|++|..+++.|.++. .++... ++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G-~~V~~~-dr   46 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWP-GGVTVY-DI   46 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTST-TCEEEE-CS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCC-CeEEEE-eC
Confidence            368999999999999999998875 455444 55

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=95.92  E-value=0.022  Score=52.73  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=24.6

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |++||+|+|+|.+|..++..|......++..+
T Consensus         1 ~~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~   32 (404)
T 3c7a_A            1 MTVKVCVCGGGNGAHTLSGLAASRDGVEVRVL   32 (404)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTEEEEEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHhCCCCEEEEE
Confidence            34799999999999999999876434566554

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.87  E-value=0.023  Score=51.37  Aligned_cols=36  Identities=33%  Similarity=0.272  Sum_probs=28.0

Q ss_pred             CCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         3 ~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +.|++||+|+|+|.+|..++..+.....++ +.+.|.
T Consensus        11 ~~~~~kI~ViGaG~vG~~iA~~la~~g~~~-V~L~Di   46 (328)
T 2hjr_A           11 VIMRKKISIIGAGQIGSTIALLLGQKDLGD-VYMFDI   46 (328)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECS
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEEC
Confidence            345579999999999999999888776557 666676

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.83  E-value=0.0089  Score=54.11  Aligned_cols=30  Identities=30%  Similarity=0.419  Sum_probs=25.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G-~~V~~~d  167 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALG-MHVIGVN  167 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC-CEEEEEC
Confidence            58999999999999999998764 7877664

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=95.81  E-value=0.0036  Score=55.20  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=24.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |+||+|+|+|.+|..+++.|.+.. .++...
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~   32 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAG-HQLHVT   32 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTT-CEEEEC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCC-CEEEEE
Confidence            368999999999999999998764 566544

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.80  E-value=0.035  Score=48.96  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=23.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |+||+|+|+|.+|..+++.|.+.. .++..+
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~   32 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGG-NDVTLI   32 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCC-CcEEEE
Confidence            479999999999999999998765 355444

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.79  E-value=0.014  Score=52.44  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=48.8

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhh-cccccc-cCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTY-MFKYDS-VHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~-~l~~~s-~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |++||+|+|+|.+|..+...|.+.. .++..+ ++ ...+.+.. .+...+ .++.             ..+.  .+.+.
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g-~~V~~~-~r-~~~~~i~~~Gl~~~~~~~g~-------------~~~~--~~~~~   62 (320)
T 3i83_A            1 MSLNILVIGTGAIGSFYGALLAKTG-HCVSVV-SR-SDYETVKAKGIRIRSATLGD-------------YTFR--PAAVV   62 (320)
T ss_dssp             --CEEEEESCCHHHHHHHHHHHHTT-CEEEEE-CS-TTHHHHHHHCEEEEETTTCC-------------EEEC--CSCEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC-CeEEEE-eC-ChHHHHHhCCcEEeecCCCc-------------EEEe--eeeeE
Confidence            4579999999999999999988754 455544 34 12221110 011111 1110             1110  11122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHH
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH  116 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~  116 (296)
                        .+++++   ..++|+||.|++.....+.++.+
T Consensus        63 --~~~~~~---~~~~DlVilavK~~~~~~~l~~l   91 (320)
T 3i83_A           63 --RSAAEL---ETKPDCTLLCIKVVEGADRVGLL   91 (320)
T ss_dssp             --SCGGGC---SSCCSEEEECCCCCTTCCHHHHH
T ss_pred             --CCHHHc---CCCCCEEEEecCCCChHHHHHHH
Confidence              244444   23789999999998877666655

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.78  E-value=0.0063  Score=54.05  Aligned_cols=99  Identities=19%  Similarity=0.135  Sum_probs=54.7

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccc-ccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFK-YDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~-~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      ||.+|.|.|+ |.+|+.+++.|.++. .++.++.-. .+. . +..+. ...  .    + +.      +.       ..
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~-~~~-~-~~~~~~l~~--~----~-v~------~v-------~~   65 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRP-NSS-K-TTLLDEFQS--L----G-AI------IV-------KG   65 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECT-TCS-C-HHHHHHHHH--T----T-CE------EE-------EC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHCC-CcEEEEECC-CCc-h-hhHHHHhhc--C----C-CE------EE-------Ee
Confidence            3458999999 999999999999875 566665422 211 0 00100 000  0    0 00      00       00


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCc---cCHHHHHHHHHCC-CCeEEee
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVF---TDKDKAAAHLKGG-AKKVVIS  127 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~---~~~~~~~~~l~~G-~k~vvid  127 (296)
                      .-.|++.+.-...++|+||.+++..   .....++.+.++| ++++|.|
T Consensus        66 Dl~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S  114 (318)
T 2r6j_A           66 ELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPS  114 (318)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECS
T ss_pred             cCCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEee
Confidence            0012222211135799999998842   3445666677778 8887754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.74  E-value=0.013  Score=52.80  Aligned_cols=39  Identities=13%  Similarity=0.209  Sum_probs=29.0

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |...+++||+|+|+|.+|..++..|...+-+.-+.+.|.
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di   39 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDA   39 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            655555799999999999999998877654433444465

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.69  E-value=0.019  Score=54.32  Aligned_cols=33  Identities=18%  Similarity=0.361  Sum_probs=25.8

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |++||+|+|+|++|..++..|.+.. .+++.+ |+
T Consensus         1 M~mkI~VIG~G~vG~~lA~~La~~G-~~V~~~-D~   33 (450)
T 3gg2_A            1 MSLDIAVVGIGYVGLVSATCFAELG-ANVRCI-DT   33 (450)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhcC-CEEEEE-EC
Confidence            3468999999999999999998764 566654 44

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.0072  Score=57.49  Aligned_cols=97  Identities=10%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +.||.|+|+|.+|+.+++.|.+++..+++ |.++  +.+....+.  +. .+ ..           .      + .....
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~-v~~R--~~~ka~~la--~~-~~-~~-----------~------~-~~D~~   77 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDDINVT-VACR--TLANAQALA--KP-SG-SK-----------A------I-SLDVT   77 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTTEEEE-EEES--SHHHHHHHH--GG-GT-CE-----------E------E-ECCTT
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCCCeEE-EEEC--CHHHHHHHH--Hh-cC-Cc-----------E------E-EEecC
Confidence            36899999999999999999998777754 4454  322111111  11 00 00           0      0 00000


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      +.+++.-...++|+||.|+|.+........++++|.  .++|.+
T Consensus        78 d~~~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~--~vvd~~  119 (467)
T 2axq_A           78 DDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKT--DVVTSS  119 (467)
T ss_dssp             CHHHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTC--EEEECS
T ss_pred             CHHHHHHHHcCCCEEEECCchhhhHHHHHHHHhcCC--EEEEee
Confidence            111110002479999999998876666777788887  667653

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.63  E-value=0.036  Score=49.45  Aligned_cols=31  Identities=32%  Similarity=0.361  Sum_probs=24.1

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |++||+|+|+|.+|..+...|. . ..++..+.
T Consensus         1 M~mkI~IiGaGa~G~~~a~~L~-~-g~~V~~~~   31 (307)
T 3ego_A            1 MSLKIGIIGGGSVGLLCAYYLS-L-YHDVTVVT   31 (307)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-T-TSEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHh-c-CCceEEEE
Confidence            4579999999999999999888 4 35665553

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.60  E-value=0.015  Score=53.02  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=24.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++|||+|+|.||+.+++.+.... +++.+.
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G-~~V~~~  200 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFG-MSVRYW  200 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            68999999999999999998764 676544

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.56  E-value=0.015  Score=51.15  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=26.7

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |+.+  ++|.|.|+ |.+|+.+++.|.++. .++.++.
T Consensus         1 M~~~--~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   35 (313)
T 1qyd_A            1 MDKK--SRVLIVGGTGYIGKRIVNASISLG-HPTYVLF   35 (313)
T ss_dssp             -CCC--CCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCCC--CEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEE
Confidence            6532  68999999 999999999998875 5666654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.53  E-value=0.032  Score=49.07  Aligned_cols=31  Identities=19%  Similarity=0.241  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..+++.+.++. .+++. .++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G-~~V~l-~d~   35 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHG-FAVTA-YDI   35 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEE-ECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEE-EeC
Confidence            68999999999999999998875 56544 455

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.53  E-value=0.02  Score=54.36  Aligned_cols=95  Identities=16%  Similarity=0.220  Sum_probs=59.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCc---EEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDV---ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~---elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      +.||.|+|+|-||+.+++++.+|+++   +++- .|+......+...+      +              +.     +...
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~v-aD~~~~~~~~~~~~------g--------------~~-----~~~~   66 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTI-IAAEGTKVDVAQQY------G--------------VS-----FKLQ   66 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEE-EESSCCSCCHHHHH------T--------------CE-----EEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEE-eccchhhhhHHhhc------C--------------Cc-----eeEE
Confidence            36899999999999999999999876   4443 34411111111000      0              00     0000


Q ss_pred             ecCCCC---C-CC-cccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           83 GFRNPE---E-IP-WAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        83 ~~~d~~---~-i~-~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      . .|.+   + +. . ..+.|+|+.+++...+...++.++++|+  -.+|+.-
T Consensus        67 ~-Vdadnv~~~l~aL-l~~~DvVIN~s~~~~~l~Im~acleaGv--~YlDTa~  115 (480)
T 2ph5_A           67 Q-ITPQNYLEVIGST-LEENDFLIDVSIGISSLALIILCNQKGA--LYINAAT  115 (480)
T ss_dssp             C-CCTTTHHHHTGGG-CCTTCEEEECCSSSCHHHHHHHHHHHTC--EEEESSC
T ss_pred             e-ccchhHHHHHHHH-hcCCCEEEECCccccCHHHHHHHHHcCC--CEEECCC
Confidence            0 0111   1 11 1 1234999999999999999999999999  8898863

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.53  E-value=0.048  Score=51.90  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=26.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCc-EEEEEe
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~-elv~i~   37 (296)
                      ++||+|+|+|++|..++..|.+.|.. +++.+.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D   50 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQ   50 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEE
Confidence            37999999999999999999988545 776653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.53  E-value=0.012  Score=49.26  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=25.5

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ||.+|.|.|+ |.+|+.+++.|.+....+++.+.
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~   37 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDMHITLYG   37 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEe
Confidence            4345999999 99999999999833346776664

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.52  E-value=0.0065  Score=52.58  Aligned_cols=23  Identities=30%  Similarity=0.603  Sum_probs=20.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      +||+|+|+|.+|..+++.|.+..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g   27 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANAN   27 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC
Confidence            68999999999999999987654

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.49  E-value=0.014  Score=54.96  Aligned_cols=31  Identities=35%  Similarity=0.419  Sum_probs=25.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||+|+|+|++|..++..|.+  ..+++.+ |+
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~--G~~V~~~-D~   66 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ--NHEVVAL-DI   66 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSEEEEE-CS
T ss_pred             CCEEEEECcCHHHHHHHHHHHc--CCeEEEE-ec
Confidence            3799999999999999998886  4777665 44

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.46  E-value=0.011  Score=54.21  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      ++||+|+|+|.+|..++..|.+..
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G   52 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKG   52 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTT
T ss_pred             CCeEEEECccHHHHHHHHHHHHCC
Confidence            369999999999999999998764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.43  E-value=0.016  Score=53.09  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.8

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      ||+||+|+|+|.+|..+++.|.+.
T Consensus        20 ~~~kI~iIGaG~mG~alA~~L~~~   43 (375)
T 1yj8_A           20 GPLKISILGSGNWASAISKVVGTN   43 (375)
T ss_dssp             SCBCEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc
Confidence            457999999999999999988653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.42  E-value=0.006  Score=55.43  Aligned_cols=88  Identities=22%  Similarity=0.114  Sum_probs=52.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||||+|+|.+|..+++.|.... ++++ +.++..+. .. ...  ..             .|  +       .+.   +
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G-~~V~-~~~~~~~~-~~-~~a--~~-------------~G--~-------~~~---~   65 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSG-VDVT-VGLRSGSA-TV-AKA--EA-------------HG--L-------KVA---D   65 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT-CCEE-EECCTTCH-HH-HHH--HH-------------TT--C-------EEE---C
T ss_pred             CEEEEECchHHHHHHHHHHHHCc-CEEE-EEECChHH-HH-HHH--HH-------------CC--C-------EEc---c
Confidence            58999999999999999998765 5654 44442221 00 000  00             01  1       011   2


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHH-HH---HHCCCCeEEeeCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAA-AH---LKGGAKKVVISAPS  130 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~-~~---l~~G~k~vvid~~~  130 (296)
                      +++.   ..++|+||.|+|.....+... ++   ++.|+  +++|.++
T Consensus        66 ~~e~---~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~--ivi~~~g  108 (338)
T 1np3_A           66 VKTA---VAAADVVMILTPDEFQGRLYKEEIEPNLKKGA--TLAFAHG  108 (338)
T ss_dssp             HHHH---HHTCSEEEECSCHHHHHHHHHHHTGGGCCTTC--EEEESCC
T ss_pred             HHHH---HhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCC--EEEEcCC
Confidence            2222   247899999999877666655 33   33455  7777643

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.37  E-value=0.023  Score=43.58  Aligned_cols=29  Identities=28%  Similarity=0.518  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++|.|+|+|++|+.+++.|.+.. .+++.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g-~~v~~~   33 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKG-HDIVLI   33 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence            58999999999999999998764 566655

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.36  E-value=0.018  Score=52.52  Aligned_cols=31  Identities=32%  Similarity=0.467  Sum_probs=25.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~-dr  204 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFG-LAIHYH-NR  204 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTT-CEEEEE-CS
T ss_pred             CEEEEEEeChhHHHHHHHHHHCC-CEEEEE-CC
Confidence            58999999999999999998764 787665 44

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.36  E-value=0.019  Score=50.84  Aligned_cols=90  Identities=16%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .+|+|+|+|.+|+.+++.+.... +++... ++  +.+.....   .+ ++              .    .   .....+
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~-dr--~~~~~~~~---~~-~g--------------~----~---~~~~~~  206 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALG-AKVKVG-AR--ESDLLARI---AE-MG--------------M----E---PFHISK  206 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-ES--SHHHHHHH---HH-TT--------------S----E---EEEGGG
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCC-CEEEEE-EC--CHHHHHHH---HH-CC--------------C----e---ecChhh
Confidence            58999999999999999998775 576554 44  22111010   00 00              0    0   010012


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      .+++   ..++|+|+.|+|.....+..-..++.|.  ++|+.+.
T Consensus       207 l~~~---l~~aDvVi~~~p~~~i~~~~l~~mk~~~--~lin~ar  245 (293)
T 3d4o_A          207 AAQE---LRDVDVCINTIPALVVTANVLAEMPSHT--FVIDLAS  245 (293)
T ss_dssp             HHHH---TTTCSEEEECCSSCCBCHHHHHHSCTTC--EEEECSS
T ss_pred             HHHH---hcCCCEEEECCChHHhCHHHHHhcCCCC--EEEEecC
Confidence            2222   2579999999997553332233456676  7887653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.32  E-value=0.021  Score=52.08  Aligned_cols=30  Identities=23%  Similarity=0.186  Sum_probs=23.5

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||+|+|+|.+|..+++.|.+.. .++.. .++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G-~~V~~-~~r   46 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKC-REVCV-WHM   46 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTE-EEEEE-ECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CEEEE-EEC
Confidence            9999999999999999998654 45443 344

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.30  E-value=0.016  Score=52.07  Aligned_cols=39  Identities=23%  Similarity=0.191  Sum_probs=27.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |..++++||+|+|+|.+|..++..|...+.+.-+.+.|.
T Consensus         1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di   39 (317)
T 3d0o_A            1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDL   39 (317)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            544445799999999999999998887664444555565

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.25  E-value=0.046  Score=45.27  Aligned_cols=30  Identities=40%  Similarity=0.550  Sum_probs=25.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||.|.|+ |.+|+.+++.|.++. .+++++.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g-~~V~~~~   31 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRG-HEVTAIV   31 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCC-CEEEEEE
Confidence            37999999 999999999999876 6777764

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.24  E-value=0.025  Score=48.68  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=25.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||||+|+|.+|..+++.|.++. .++.. .++
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G-~~V~~-~~r   50 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLG-HEVTI-GTR   50 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEE-EES
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence            479999999999999999998765 45544 444

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.24  E-value=0.017  Score=52.18  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..+++.|.+.. .++..+ ++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g-~~V~~~-~r   35 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKG-QSVLAW-DI   35 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CEEEEE-eC
Confidence            69999999999999999988764 565443 44

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.22  E-value=0.055  Score=45.36  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=20.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      ++||+|+|+|.+|..+++.|.+..
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g   42 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAG   42 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC
Confidence            368999999999999999887653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.22  E-value=0.035  Score=46.82  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=24.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||+|+|+|.+|+.+++.|.+.. .++.. .++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g-~~V~~-~~r   59 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSG-FKVVV-GSR   59 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTT-CCEEE-EES
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence            368999999999999999998765 45544 344

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.17  E-value=0.0095  Score=53.19  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..+++.|.+.. .++. +.++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g-~~V~-~~~~   61 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMG-HTVT-VWNR   61 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCC-CEEE-EEeC
Confidence            78999999999999999998764 4543 4454

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.12  E-value=0.0063  Score=53.67  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=24.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||||+|+|.+|..+++.|.+.. .++. +.++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G-~~V~-~~dr   32 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAG-FDVT-VWNR   32 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHT-CCEE-EECS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCC-CeEE-EEcC
Confidence            58999999999999999988754 4444 3455

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.10  E-value=0.019  Score=51.25  Aligned_cols=31  Identities=16%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |++||+|+|+|.+|..+...|.+.. .++..+
T Consensus         1 M~mkI~IiGaGaiG~~~a~~L~~~g-~~V~~~   31 (312)
T 3hn2_A            1 MSLRIAIVGAGALGLYYGALLQRSG-EDVHFL   31 (312)
T ss_dssp             ---CEEEECCSTTHHHHHHHHHHTS-CCEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC-CeEEEE
Confidence            4478999999999999999988654 344444

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.08  E-value=0.036  Score=48.41  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..+++.|.+  ..++. +.++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~--g~~V~-~~~~   31 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR--RFPTL-VWNR   31 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT--TSCEE-EECS
T ss_pred             CeEEEEcccHHHHHHHHHHhC--CCeEE-EEeC
Confidence            589999999999999999887  46654 4455

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.07  E-value=0.047  Score=44.60  Aligned_cols=30  Identities=30%  Similarity=0.318  Sum_probs=25.7

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|.|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~   34 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAG-YEVTVLV   34 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEE
Confidence            58999999 999999999999875 6776664

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.99  E-value=0.008  Score=54.79  Aligned_cols=94  Identities=14%  Similarity=0.029  Sum_probs=53.4

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +..||+|+|+|.+|..+++.|.+.. .++.. .++  +.+.+.....    +            |  +       ...  
T Consensus         7 ~~~kIgIIG~G~mG~slA~~L~~~G-~~V~~-~dr--~~~~~~~a~~----~------------G--~-------~~~--   55 (341)
T 3ktd_A            7 ISRPVCILGLGLIGGSLLRDLHAAN-HSVFG-YNR--SRSGAKSAVD----E------------G--F-------DVS--   55 (341)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTT-CCEEE-ECS--CHHHHHHHHH----T------------T--C-------CEE--
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCC-CEEEE-EeC--CHHHHHHHHH----c------------C--C-------eee--
Confidence            3468999999999999999998775 55544 454  3322111110    0            1  1       011  


Q ss_pred             CCCCCC-CcccCCCcEEEEccCCccCHHHHHHHH--HCCCCeEEeeCCCC
Q 022491           85 RNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHL--KGGAKKVVISAPSK  131 (296)
Q Consensus        85 ~d~~~i-~~~~~~~DvV~~at~~~~~~~~~~~~l--~~G~k~vvid~~~~  131 (296)
                      .++++. .....++|+||.|+|.....+....+.  ..|+  +|+|.++-
T Consensus        56 ~~~~e~~~~a~~~aDlVilavP~~~~~~vl~~l~~~~~~~--iv~Dv~Sv  103 (341)
T 3ktd_A           56 ADLEATLQRAAAEDALIVLAVPMTAIDSLLDAVHTHAPNN--GFTDVVSV  103 (341)
T ss_dssp             SCHHHHHHHHHHTTCEEEECSCHHHHHHHHHHHHHHCTTC--CEEECCSC
T ss_pred             CCHHHHHHhcccCCCEEEEeCCHHHHHHHHHHHHccCCCC--EEEEcCCC
Confidence            122221 000125799999999765555444432  4565  78887653

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=94.95  E-value=0.011  Score=53.54  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~d  170 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFG-MKVLGVS  170 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             ceEEEEEECHHHHHHHHHHHhCC-CEEEEEc
Confidence            58999999999999999998764 7776653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.92  E-value=0.02  Score=51.42  Aligned_cols=91  Identities=9%  Similarity=0.058  Sum_probs=51.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCC---cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~---~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      +||+|+|+|.+|..+++.|.+...   .++. +.++..+.+....+.   . +            |  +.       +..
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~-v~~r~~~~~~~~~l~---~-~------------G--~~-------~~~   76 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIM-ASSPDMDLATVSALR---K-M------------G--VK-------LTP   76 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEE-EECSCTTSHHHHHHH---H-H------------T--CE-------EES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEE-EECCCccHHHHHHHH---H-c------------C--CE-------EeC
Confidence            689999999999999999887541   3444 445522201111110   0 0            1  10       111


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHH---CCCCeEEeeCCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK---GGAKKVVISAPS  130 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~---~G~k~vvid~~~  130 (296)
                        ++.+.   ..++|+||.|++.....+.+..+..   .|.  +|||.++
T Consensus        77 --~~~e~---~~~aDvVilav~~~~~~~vl~~l~~~l~~~~--ivvs~s~  119 (322)
T 2izz_A           77 --HNKET---VQHSDVLFLAVKPHIIPFILDEIGADIEDRH--IVVSCAA  119 (322)
T ss_dssp             --CHHHH---HHHCSEEEECSCGGGHHHHHHHHGGGCCTTC--EEEECCT
T ss_pred             --ChHHH---hccCCEEEEEeCHHHHHHHHHHHHhhcCCCC--EEEEeCC
Confidence              22222   2468999999997666665555432   243  7888643

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.92  E-value=0.027  Score=50.97  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=27.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |... .+||+|+|+|.+|..++..|...+.+.-+.+.|.
T Consensus         1 m~~~-~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~   38 (326)
T 3pqe_A            1 MNKH-VNKVALIGAGFVGSSYAFALINQGITDELVVIDV   38 (326)
T ss_dssp             -CCS-CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCC-CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEec
Confidence            5443 3799999999999999999988775533444455

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.91  E-value=0.033  Score=50.87  Aligned_cols=31  Identities=32%  Similarity=0.415  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G-~~V~~~-dr  195 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFG-CNLLYH-DR  195 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGC-CEEEEE-CS
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCC-CEEEEe-CC
Confidence            58999999999999999998764 776554 44

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.89  E-value=0.093  Score=46.67  Aligned_cols=33  Identities=33%  Similarity=0.454  Sum_probs=25.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCc-EEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~-elv~i~~~   39 (296)
                      ++||+|+|+|.+|..++..|.....+ +++ +.++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~-l~d~   40 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIV-LEDI   40 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence            47999999999999999988876544 554 4455

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.89  E-value=0.021  Score=50.15  Aligned_cols=31  Identities=26%  Similarity=0.265  Sum_probs=26.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|-|.|+ |.+|+.+++.|.+++..++.++.
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~   37 (299)
T 2wm3_A            6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVT   37 (299)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCceEEEEE
Confidence            68999999 99999999999887656777765

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.86  E-value=0.028  Score=49.34  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=26.2

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |+.+  ++|.|.|+ |.+|+.+++.|.+++ .++.++.
T Consensus         1 M~~~--~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~   35 (308)
T 1qyc_A            1 MGSR--SRILLIGATGYIGRHVAKASLDLG-HPTFLLV   35 (308)
T ss_dssp             -CCC--CCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCCC--CEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEE
Confidence            6532  68999999 999999999999876 5565553

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=94.83  E-value=0.028  Score=51.17  Aligned_cols=30  Identities=27%  Similarity=0.540  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+.+++.+.... +++.+..
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G-~~V~~~d  178 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMG-AKVIAYD  178 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CeEEEEecCHHHHHHHHHHhhCC-CEEEEEC
Confidence            58999999999999999998764 7776653

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.81  E-value=0.04  Score=49.80  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=20.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcC
Q 022491            6 KIKIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      ++||+|+|+|.+|..+++.|.+.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~   30 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGN   30 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc
Confidence            36999999999999999988764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.79  E-value=0.022  Score=50.69  Aligned_cols=31  Identities=19%  Similarity=0.296  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.+|+.+++.+.... +++... ++
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~-d~  188 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALG-ANVKVG-AR  188 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE-ES
T ss_pred             CEEEEEcccHHHHHHHHHHHHCC-CEEEEE-EC
Confidence            58999999999999999998775 566554 44

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.71  E-value=0.016  Score=51.52  Aligned_cols=29  Identities=38%  Similarity=0.595  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.|.... +++.+.
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~  151 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFG-MRVIAY  151 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT-CEEEEE
T ss_pred             chheeeccCchhHHHHHHHHhhC-cEEEEE
Confidence            58999999999999999998754 677665

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.62  E-value=0.016  Score=48.41  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=23.7

Q ss_pred             eEEEEEe-cCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGING-FGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G-~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      +||+|+| +|.+|+.+++.|.++. .++..+
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~   30 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLG-HEIVVG   30 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCC-CEEEEE
Confidence            3799999 6999999999998875 566554

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=94.60  E-value=0.044  Score=48.84  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=27.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+|.+|..++-+|..++.+.-+.+.|.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di   33 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            589999999999999998888777655556675

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.54  E-value=0.035  Score=50.02  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=24.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |.+||+|+|+|.+|..+.+.|.+.. .++. +.++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G-~~V~-~~~r   45 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENG-EEVI-LWAR   45 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCC-CeEE-EEeC
Confidence            5689999999999999999987654 3443 3344

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.54  E-value=0.23  Score=41.69  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=26.3

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .++|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~   52 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKG-HEPVAMV   52 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCC-CeEEEEE
Confidence            368999999 999999999999875 5776664

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.52  E-value=0.02  Score=54.67  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|..++..+.+.. .+++. .|+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG-~~V~l-~D~   36 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHG-HQVLL-YDI   36 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT-CCEEE-ECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CeEEE-EEC
Confidence            58999999999999999988764 45443 454

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=94.50  E-value=0.068  Score=48.11  Aligned_cols=32  Identities=31%  Similarity=0.394  Sum_probs=27.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..|...+.++ +.+.|.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~-v~L~Di   36 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGD-VVLFDI   36 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCE-EEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence            68999999999999999998876557 666676

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=94.41  E-value=0.014  Score=53.33  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=27.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+++|+|+|.+|+.+++.+.....++.+.|.++
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r  162 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDT  162 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECS
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            689999999999999988765444777788776

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=94.41  E-value=0.023  Score=51.17  Aligned_cols=34  Identities=18%  Similarity=0.116  Sum_probs=28.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ..+++|+|+|.+|+.+++.|.....++.+.|.++
T Consensus       125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r  158 (322)
T 1omo_A          125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV  158 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECS
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECC
Confidence            3689999999999999999887545788888877

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=94.39  E-value=0.059  Score=48.83  Aligned_cols=29  Identities=38%  Similarity=0.494  Sum_probs=23.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++|||+|+|.||+.+++.+.... +++.+.
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G-~~V~~~  193 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFD-CPISYF  193 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTT-CCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            57999999999999999998764 565543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.39  E-value=0.065  Score=47.94  Aligned_cols=30  Identities=20%  Similarity=0.388  Sum_probs=23.8

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++||+|+|+|.+|..+...|.+.. .++..+
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G-~~V~l~   48 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAG-HEVILI   48 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC-CeEEEE
Confidence            479999999999999999998754 355544

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=94.34  E-value=0.039  Score=50.72  Aligned_cols=31  Identities=35%  Similarity=0.623  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG-~~V~~~-d~  207 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFR-ARIRVF-DP  207 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSC-CEEEEE-CS
T ss_pred             CEEEEecCCcccHHHHHhhhhCC-CEEEEE-CC
Confidence            58999999999999999987654 777665 44

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.33  E-value=0.041  Score=47.83  Aligned_cols=30  Identities=30%  Similarity=0.368  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||-|.|+|++|+.+++.|.++. .+++++.
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g-~~V~~~~   33 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQG-HEVTGLR   33 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            58999999999999999998875 5676664

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.31  E-value=0.019  Score=50.58  Aligned_cols=31  Identities=23%  Similarity=0.547  Sum_probs=24.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..+++.|.+.. .++. +.++
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g-~~V~-~~~~   31 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHG-YPLI-IYDV   31 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CeEEEEeccHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            37999999999999999998764 4554 4455

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.24  E-value=0.091  Score=49.22  Aligned_cols=31  Identities=32%  Similarity=0.547  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+|++|..++..|.+.. .+++.+ ++
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G-~~V~~~-d~   31 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARG-HEVIGV-DV   31 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-EC
Confidence            37999999999999999998764 465554 44

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=94.23  E-value=0.035  Score=49.57  Aligned_cols=31  Identities=29%  Similarity=0.345  Sum_probs=24.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .|||+||.|.+|..+++.|.+.. .++ .+.++
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G-~~v-~v~dr   34 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAG-YLL-NVFDL   34 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEE-EEECS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCC-CeE-EEEcC
Confidence            68999999999999999998765 444 44555

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=94.18  E-value=0.038  Score=52.89  Aligned_cols=33  Identities=12%  Similarity=0.223  Sum_probs=26.7

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |..||||+|+|.+|..+++.|.++. .+|. +.++
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G-~~V~-v~dr   41 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHG-FTVC-AYNR   41 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            6678999999999999999998875 4554 4455

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.15  E-value=0.012  Score=52.87  Aligned_cols=93  Identities=26%  Similarity=0.301  Sum_probs=55.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .+++|+|+|.+|+.+++.|.. +| ++-+.|.++. ..+.++..+  ...++              +     .+...   
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~-~~~V~v~~r~-~a~~la~~l--~~~~g--------------~-----~~~~~---  175 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFA-LEAILVHDPY-ASPEILERI--GRRCG--------------V-----PARMA---  175 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSC-CCEEEEECTT-CCHHHHHHH--HHHHT--------------S-----CEEEC---
T ss_pred             cEEEEECccHHHHHHHHHHHHhCC-CcEEEEECCc-HHHHHHHHH--HHhcC--------------C-----eEEEe---
Confidence            689999999999999999886 45 7777788874 433332211  11010              1     01111   


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK  131 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~  131 (296)
                      ++++.   ..++|+||.|||..... .-...++.|.  .|++.++.
T Consensus       176 ~~~ea---v~~aDIVi~aT~s~~pv-l~~~~l~~G~--~V~~vGs~  215 (313)
T 3hdj_A          176 APADI---AAQADIVVTATRSTTPL-FAGQALRAGA--FVGAIGSS  215 (313)
T ss_dssp             CHHHH---HHHCSEEEECCCCSSCS-SCGGGCCTTC--EEEECCCS
T ss_pred             CHHHH---HhhCCEEEEccCCCCcc-cCHHHcCCCc--EEEECCCC
Confidence            23332   24789999999985321 1123456777  77776553

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.15  E-value=0.32  Score=42.63  Aligned_cols=31  Identities=13%  Similarity=0.133  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .|+.|+|+|-+|+.+++.|.... .++..+ ++
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G-~~v~V~-nR  149 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQG-LQVSVL-NR  149 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC
Confidence            48999999999999999999887 665444 44

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.12  E-value=0.068  Score=50.96  Aligned_cols=31  Identities=10%  Similarity=0.128  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||||+|+|.+|..+++.|.++. .+++ +.++
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G-~~V~-v~dr   35 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHG-FVVC-AFNR   35 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CEEEEEChhHHHHHHHHHHHHCC-CEEE-EEeC
Confidence            68999999999999999998875 4554 4455

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.11  E-value=0.03  Score=49.60  Aligned_cols=32  Identities=28%  Similarity=0.278  Sum_probs=25.9

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ||++|.|.|+ |.+|+.+++.|.++. .++.++.
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   35 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYA   35 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEE
Confidence            3468999999 999999999999875 5666654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=94.06  E-value=0.026  Score=50.52  Aligned_cols=33  Identities=12%  Similarity=-0.018  Sum_probs=27.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++|+|+|+|.+|+.+++.|.....++.+.+.++
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr  168 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR  168 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            689999999999999999877534655677776

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=94.05  E-value=0.18  Score=44.81  Aligned_cols=32  Identities=31%  Similarity=0.432  Sum_probs=24.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCC-cEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDD-VELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~-~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..|....- -++ .+.|+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V-~l~d~   34 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDY-VFIDA   34 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEE-EEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEE-EEEcC
Confidence            689999999999999998887642 244 44455

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.98  E-value=0.1  Score=46.35  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=25.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||-|.|+ |.+|+.+++.|.++. .+++++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   44 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIH   44 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence            58999999 999999999998875 5777664

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.94  E-value=0.019  Score=51.84  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=23.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      +||+|+|+|.+|..++..|.+.. .++..+
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g-~~V~~~   32 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAG-EAINVL   32 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence            68999999999999999988754 344444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.90  E-value=0.044  Score=42.48  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |...+|.+|.|+|+|++|+.+++.|.++. .+++.+.
T Consensus         1 m~~~~~~~v~I~G~G~iG~~la~~L~~~g-~~V~~id   36 (141)
T 3llv_A            1 MTENGRYEYIVIGSEAAGVGLVRELTAAG-KKVLAVD   36 (141)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence            44333468999999999999999998764 5666653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.81  E-value=0.031  Score=46.96  Aligned_cols=30  Identities=30%  Similarity=0.335  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||.|+|+|++|+.+++.|.+.. .+++.+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g-~~v~vid   30 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRK-YGVVIIN   30 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            47999999999999999998764 5666664

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.78  E-value=0.12  Score=46.81  Aligned_cols=33  Identities=30%  Similarity=0.276  Sum_probs=26.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..+...+-+.-+.+.|.
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di   54 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDV   54 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence            799999999999999999888765544455565

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.78  E-value=0.15  Score=44.16  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=23.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |||+|+|+|.+|..+++.|.+.. .++..+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~   29 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQG-HEVQGW   29 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC-CCEEEE
Confidence            37999999999999999998765 355544

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.74  E-value=0.036  Score=49.76  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=26.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEec
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~   38 (296)
                      +||.|.|+ |++|+.+++.|.+++ .++.++.-
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R   42 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAH-RPTYILAR   42 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCC-CCEEEEEC
Confidence            68999999 999999999999876 56666653

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=93.70  E-value=0.058  Score=49.51  Aligned_cols=31  Identities=29%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcE-EEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVE-LVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~e-lv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+.... ++ +.+. ++
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G-~~~V~~~-d~  196 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFN-PKELLYY-DY  196 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGC-CSEEEEE-CS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CcEEEEE-CC
Confidence            58999999999999999998764 65 6554 44

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.69  E-value=0.06  Score=46.23  Aligned_cols=31  Identities=13%  Similarity=0.079  Sum_probs=25.0

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++||+|+|+|.+|..+.+.|.+.. .+++.+
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G-~~V~~~   35 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVG-HYVTVL   35 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTT-CEEEEC
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCC-CEEEEe
Confidence            3479999999999999999998764 455544

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.69  E-value=0.058  Score=51.22  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||||+|+|.+|..+++.|.++. .++ .+.++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G-~~V-~v~dr   36 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRG-YTV-AIYNR   36 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCC-CEE-EEEcC
Confidence            68999999999999999998875 454 44455

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.65  E-value=0.083  Score=50.25  Aligned_cols=31  Identities=10%  Similarity=0.133  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||||+|+|.+|..+++.|.++. .++ .+.++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G-~~V-~v~dr   33 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHG-FVV-CAFNR   33 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCC-CeE-EEEeC
Confidence            58999999999999999998875 454 44455

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.64  E-value=0.29  Score=43.44  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|..+++.+. . ..+++.. |+
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-a-G~~V~v~-d~   42 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-S-KHEVVLQ-DV   42 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T-TSEEEEE-CS
T ss_pred             CeEEEEeeCHHHHHHHHHHH-c-CCEEEEE-EC
Confidence            68999999999999999998 6 4665544 44

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.63  E-value=0.077  Score=46.83  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      |++||+|+|+|.+|..+...|.+.
T Consensus         1 M~mkI~iiGaGa~G~~~a~~L~~~   24 (294)
T 3g17_A            1 MSLSVAIIGPGAVGTTIAYELQQS   24 (294)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHC
Confidence            457899999999999999988754

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=93.60  E-value=0.086  Score=47.13  Aligned_cols=86  Identities=22%  Similarity=0.175  Sum_probs=57.5

Q ss_pred             eEEEEE-ec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGIN-GF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~-G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      .+++|+ |+ |..|+.+++.+.++. +++++..++ ...+        ...                   .|  ++++. 
T Consensus        14 ~siaVV~Gasg~~G~~~~~~l~~~G-~~~v~~VnP-~~~g--------~~i-------------------~G--~~vy~-   61 (305)
T 2fp4_A           14 NTKVICQGFTGKQGTFHSQQALEYG-TNLVGGTTP-GKGG--------KTH-------------------LG--LPVFN-   61 (305)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECT-TCTT--------CEE-------------------TT--EEEES-
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHCC-CcEEEEeCC-CcCc--------ceE-------------------CC--eeeec-
Confidence            458888 99 999999999888765 666644444 1110        000                   11  22332 


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                       +.++++- ..++|+++.++|.....+.+.+++++|+|.+|+
T Consensus        62 -sl~el~~-~~~vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~  101 (305)
T 2fp4_A           62 -TVKEAKE-QTGATASVIYVPPPFAAAAINEAIDAEVPLVVC  101 (305)
T ss_dssp             -SHHHHHH-HHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             -hHHHhhh-cCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence             2344420 127999999999999999999999999987444

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=93.60  E-value=0.052  Score=49.04  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=28.6

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |..+||+||-|.|+ |++|+.+++.|.+.+..+|+++.
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~   56 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMD   56 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEE
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEe
Confidence            34444579999999 99999999999987667887775

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=93.54  E-value=0.049  Score=51.41  Aligned_cols=95  Identities=7%  Similarity=0.052  Sum_probs=52.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .+|.|+|+|.+|+.+++.|.+.. .++ .+.++  +.+....+   ...++.+.     .     +        .....+
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G-~~V-~v~~R--~~~~a~~l---a~~~~~~~-----~-----~--------~~Dv~d   58 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSG-IKV-TVACR--TLESAKKL---SAGVQHST-----P-----I--------SLDVND   58 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTT-CEE-EEEES--SHHHHHHT---TTTCTTEE-----E-----E--------ECCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCc-CEE-EEEEC--CHHHHHHH---HHhcCCce-----E-----E--------EeecCC
Confidence            58999999999999999998755 664 45555  32211111   11111000     0     0        000011


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      .+++.-...++|+||.|+|...+......+++.|.  .+++.
T Consensus        59 ~~~l~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~--~vvd~   98 (450)
T 1ff9_A           59 DAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKK--HVVTT   98 (450)
T ss_dssp             HHHHHHHHTTSSEEEECCC--CHHHHHHHHHHHTC--EEEES
T ss_pred             HHHHHHHHcCCcEEEECCccccchHHHHHHHhCCC--eEEEe
Confidence            11110002479999999998776666667777776  56654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.54  E-value=0.2  Score=44.49  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..|...+.+.-+.+.|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~   33 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDR   33 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            489999999999999998887764433445565

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=93.54  E-value=0.034  Score=48.37  Aligned_cols=30  Identities=27%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |++|+|+|.+|+.+++.|.+.+ +++ .+.++
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g-~~v-~v~~r  147 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAG-LEV-WVWNR  147 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             eEEEECCcHHHHHHHHHHHHCC-CEE-EEEEC
Confidence            7999999999999999998876 354 45555

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=93.54  E-value=0.059  Score=49.97  Aligned_cols=29  Identities=34%  Similarity=0.393  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++|||+|+|.||+.+++.+.... +++.+.
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G-~~V~~~  220 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFD-VHLHYT  220 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGT-CEEEEE
T ss_pred             CEEEEEeECHHHHHHHHHHHhCC-CEEEEE
Confidence            58999999999999999998764 777654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.42  E-value=0.09  Score=47.23  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=26.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+|.+|..++..|..++-+.-+.+.|.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~   33 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDI   33 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            489999999999999999888775544455565

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=93.39  E-value=0.064  Score=50.10  Aligned_cols=29  Identities=28%  Similarity=0.441  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++||+|+|.||+.+++.+.... +++.+.
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~y  185 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLG-MTVRYY  185 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 776654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=93.35  E-value=0.14  Score=46.52  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=26.2

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |++|-|.|+ |++|+.+++.|.+.. .+++++.
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   60 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEG-HYVIASD   60 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEE
Confidence            478999999 999999999998875 5776664

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=93.33  E-value=0.1  Score=47.27  Aligned_cols=31  Identities=32%  Similarity=0.317  Sum_probs=25.6

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +++|-|.|+ |.+|+.+++.|.++. .+++++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   36 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQV   36 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence            368999999 999999999998764 5666664

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.27  E-value=0.031  Score=48.98  Aligned_cols=30  Identities=30%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|.|.|+ |.+|+.+++.|.++. .++.++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   33 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKAG-NPTYALV   33 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHHT-CCEEEEE
T ss_pred             cEEEEECCCchHHHHHHHHHHhCC-CcEEEEE
Confidence            67999999 999999999998765 4565554

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.24  E-value=0.15  Score=45.71  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=26.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||+|+|+|++|..++-.|...+.+.-+.+.|.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di   40 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDV   40 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            3799999999999999999888764444444565

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.16  E-value=0.071  Score=50.73  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=25.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||||+|+|.+|..+++.|.++. .++. +.++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G-~~V~-v~~r   46 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRG-YTVS-IFNR   46 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTT-CCEE-EECS
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCC-CeEE-EEeC
Confidence            468999999999999999998775 4554 4444

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=93.13  E-value=0.074  Score=46.61  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|+.+++.|.+.. +++ .+.++
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g-~~V-~v~~r  160 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEG-AKV-FLWNR  160 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHT-CEE-EEECS
T ss_pred             CEEEEECchHHHHHHHHHHHHcC-CEE-EEEEC
Confidence            58999999999999999998775 454 45555

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=92.97  E-value=0.12  Score=46.12  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=26.5

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++||-|.|+ |++|+.+++.|.+++ .+++++.
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   56 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLD   56 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence            378999999 999999999998876 5777665

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=92.96  E-value=0.082  Score=45.66  Aligned_cols=30  Identities=27%  Similarity=0.491  Sum_probs=25.2

Q ss_pred             EEEEEec-CHHHHHHHHHHHcC-CCcEEEEEe
Q 022491            8 KIGINGF-GRIGRLVARVALQR-DDVELVAVN   37 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~-p~~elv~i~   37 (296)
                      ||-|.|+ |.+|+.+++.|.++ +..+++++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~   32 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIV   32 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEE
Confidence            4789999 99999999999886 457777765

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=92.95  E-value=0.23  Score=46.84  Aligned_cols=82  Identities=21%  Similarity=0.212  Sum_probs=58.4

Q ss_pred             eEEEEEecC----HHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGFG----RIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~G----~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|+|+|++    +.|..+++.|.+++.-.+..||-.   .         ++++                   |  ++++
T Consensus         9 ~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~---~---------~~i~-------------------G--~~~y   55 (457)
T 2csu_A            9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK---E---------EEVQ-------------------G--VKAY   55 (457)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS---C---------SEET-------------------T--EECB
T ss_pred             CeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCC---C---------CeEC-------------------C--Eecc
Confidence            679999994    789999999988764566666522   1         1111                   1  1223


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .  +.++++   ..+|+++.++|.....+.+.++.++|+|.+|+
T Consensus        56 ~--sl~~lp---~~~Dlavi~vp~~~~~~~v~e~~~~Gi~~vv~   94 (457)
T 2csu_A           56 K--SVKDIP---DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVI   94 (457)
T ss_dssp             S--STTSCS---SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             C--CHHHcC---CCCCEEEEecCHHHHHHHHHHHHHcCCCEEEE
Confidence            2  455553   47999999999999999999999999996554

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.78  E-value=0.11  Score=46.45  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=27.9

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |++||+|+|+|++|..++..+...+.++ +.+.|.
T Consensus         1 M~~kI~VIGaG~vG~~~a~~la~~g~~~-v~L~Di   34 (309)
T 1ur5_A            1 MRKKISIIGAGFVGSTTAHWLAAKELGD-IVLLDI   34 (309)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCe-EEEEeC
Confidence            4479999999999999999998877667 666676

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=92.77  E-value=0.29  Score=46.22  Aligned_cols=31  Identities=29%  Similarity=0.518  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|..++..+.+.. .+++.+ |+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G-~~V~l~-D~   68 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVG-ISVVAV-ES   68 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE-CS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CeEEEE-EC
Confidence            58999999999999999998765 565444 54

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=92.68  E-value=0.15  Score=48.01  Aligned_cols=30  Identities=23%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      +.|+||+|.||+|.-++..|.+.. .+++.+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G-~~V~~~   37 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFG-HEVVCV   37 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCC-CEEEEE
Confidence            479999999999999999998764 566555

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=92.62  E-value=0.087  Score=46.87  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=25.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+|.+|..++..|...+.+.-+.+.|.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~   33 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence            489999999999999998887765533445565

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=92.59  E-value=0.24  Score=46.86  Aligned_cols=31  Identities=23%  Similarity=0.187  Sum_probs=25.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|..++..+.+.. ++++.. |+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG-~~V~l~-D~   85 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAG-IETFLV-VR   85 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CeEEEE-EC
Confidence            68999999999999999998764 565544 44

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=92.50  E-value=0.087  Score=50.08  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||||+|+|.+|..+++.|.++. .++ .+.++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G-~~V-~v~dr   32 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKG-FKV-AVFNR   32 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCC-CEE-EEEeC
Confidence            47999999999999999998775 454 44455

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=92.28  E-value=0.92  Score=40.20  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=26.2

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +++|-|.|+ |++|+.+++.|.+.. .+++++.
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   58 (343)
T 2b69_A           27 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVD   58 (343)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEe
Confidence            378999999 999999999998875 5776664

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=92.24  E-value=0.68  Score=43.68  Aligned_cols=103  Identities=16%  Similarity=0.224  Sum_probs=61.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCC--------ChhhhhhcccccccC-CCCcCcceeeeCCceeEECCE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI--------STDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~--------~~~~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      .||+|-|+|.+|..+++.|.+. ..++++|+|.+.        +.+.+..++.+.... +... +.   ...    +.+ 
T Consensus       253 ~~vaVqG~GnVG~~~a~~L~~~-GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~-~~---~~~----~~~-  322 (470)
T 2bma_A          253 QTAVVSGSGNVALYCVQKLLHL-NVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIK-EY---LNH----SST-  322 (470)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHT-TCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGG-GG---GGT----CSS-
T ss_pred             CEEEEECCcHHHHHHHHHHHHC-CCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHH-HH---Hhh----cCC-
Confidence            6899999999999999999887 489999988521        112222222221111 1111 00   000    000 


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEccC-CccCHHHHHHHHHCCCCeEEe
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVESTG-VFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at~-~~~~~~~~~~~l~~G~k~vvi  126 (296)
                       ....   +.+++ | ..++|+.+-|.- ...+.+.++.+++.+|| +|+
T Consensus       323 -a~~v---~~~~~-~-~~~~DI~iPcA~~~~I~~~na~~l~~~~ak-~V~  365 (470)
T 2bma_A          323 -AKYF---PNEKP-W-GVPCTLAFPCATQNDVDLDQAKLLQKNGCI-LVG  365 (470)
T ss_dssp             -CEEC---SSCCT-T-SSCCSEEEECSSTTCBCSHHHHHHHHTTCC-EEE
T ss_pred             -cEEe---cCcCe-e-ecCccEEEeccccCcCCHHHHHHHHhcCcE-EEE
Confidence             0111   23455 7 469999999874 45677888888888996 444

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=92.24  E-value=0.67  Score=38.74  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=25.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCc-EEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~-elv~i~   37 (296)
                      ++|-|.|+ |.+|+.+++.|.+++.+ +++.+.
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~   51 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIG   51 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEE
Confidence            58999999 99999999999987654 666654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=92.23  E-value=0.42  Score=42.69  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..|.......-+.+.|+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~   33 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            479999999999999998876543323344455

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=92.16  E-value=0.11  Score=44.97  Aligned_cols=30  Identities=27%  Similarity=0.567  Sum_probs=25.5

Q ss_pred             EEEEEec-CHHHHHHHHHHHcC-CCcEEEEEe
Q 022491            8 KIGINGF-GRIGRLVARVALQR-DDVELVAVN   37 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~-p~~elv~i~   37 (296)
                      +|-|.|+ |.+|+.+++.|.++ +..+++++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~   33 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIV   33 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEE
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEE
Confidence            6899999 99999999999886 457777765

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.11  E-value=0.55  Score=41.76  Aligned_cols=32  Identities=31%  Similarity=0.420  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~   39 (296)
                      +||+|+|+|++|..++..|...+ ..+++.+ |+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~-D~   33 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLL-DV   33 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEE-CS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE-eC
Confidence            48999999999999999988753 3455444 54

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.06  E-value=0.16  Score=39.49  Aligned_cols=32  Identities=28%  Similarity=0.490  Sum_probs=26.5

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |+.+|.|+|+|++|+.+++.|.++. .+++.+.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g-~~v~vid   37 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASD-IPLVVIE   37 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CCEEEEE
Confidence            4568999999999999999998764 5666664

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=91.93  E-value=0.98  Score=39.65  Aligned_cols=30  Identities=13%  Similarity=0.172  Sum_probs=25.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|-|.|+ |.+|+.+++.|.++. .+++++.
T Consensus        12 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~   42 (342)
T 1y1p_A           12 SLVLVTGANGFVASHVVEQLLEHG-YKVRGTA   42 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCC-CEEEEEe
Confidence            68999999 999999999998875 5666654

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=91.83  E-value=0.48  Score=41.45  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=25.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++|-|.|+ |++|+.+++.|.++.  +++.+..+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~   33 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNL   33 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEEcC
Confidence            58999999 999999999999887  55666443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=91.65  E-value=0.17  Score=46.81  Aligned_cols=103  Identities=14%  Similarity=0.086  Sum_probs=54.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHc----CCCc--EEEEEecCCCC--hhhhhhcccccccC--CC-CcCcceeeeCCceeEEC
Q 022491            7 IKIGINGFGRIGRLVARVALQ----RDDV--ELVAVNDPFIS--TDYMTYMFKYDSVH--GQ-WKHNELKVKDEKTLLFG   75 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~----~p~~--elv~i~~~~~~--~~~~a~~l~~~s~~--~~-~~~~~v~~~~~~~l~~~   75 (296)
                      .||+|+|+|..|..|+..|.+    ++..  ..|.+-.+..+  .+.++..+  ...|  ++ |+ + ++      |  .
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~i--n~~~~N~~YLp-g-v~------L--p  102 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEII--NTRHQNVKYLP-G-IT------L--P  102 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHH--TTTCCBTTTBT-T-CC------C--C
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHH--HhcCcCcccCC-C-Cc------C--C
Confidence            799999999999999999875    2321  12333332111  11111111  1222  11 22 1 11      1  1


Q ss_pred             CEEEEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHH---HCCCCeEEeeCC
Q 022491           76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL---KGGAKKVVISAP  129 (296)
Q Consensus        76 ~~~i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l---~~G~k~vvid~~  129 (296)
                       ..+...  .|+++.   ..+.|+||.++|+..-++.+.++.   ..+.  .+|++.
T Consensus       103 -~~i~~t--~dl~~a---l~~ad~ii~avPs~~~r~~l~~l~~~~~~~~--~iv~~~  151 (391)
T 4fgw_A          103 -DNLVAN--PDLIDS---VKDVDIIVFNIPHQFLPRICSQLKGHVDSHV--RAISCL  151 (391)
T ss_dssp             -SSEEEE--SCHHHH---HTTCSEEEECSCGGGHHHHHHHHTTTSCTTC--EEEECC
T ss_pred             -CCcEEe--CCHHHH---HhcCCEEEEECChhhhHHHHHHhccccCCCc--eeEEec
Confidence             112232  244332   358999999999988777776653   3343  566553

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=91.59  E-value=0.26  Score=44.48  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=26.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..|...+.+.-+.+.|.
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di   52 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMKDLADELALVDV   52 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeC
Confidence            699999999999999988887775544455565

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.55  E-value=0.18  Score=48.18  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.||+.+++.+.... ++++++ ++
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~G-a~Viv~-d~  305 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQG-ARVSVT-EI  305 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEE-eC
Confidence            58999999999999999998775 565544 44

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.41  E-value=0.27  Score=44.28  Aligned_cols=32  Identities=28%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..|...+..++ .+.|.
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v-~L~Di   39 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDV-VLFDI   39 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEE-EEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeE-EEEeC
Confidence            699999999999999998887653354 44455

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.36  E-value=0.23  Score=44.83  Aligned_cols=33  Identities=18%  Similarity=0.189  Sum_probs=26.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..|...+-+.-+.+.|.
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~   42 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            689999999999999999988776644455565

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=91.35  E-value=0.21  Score=46.72  Aligned_cols=31  Identities=10%  Similarity=0.215  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.||+.+++.+.... ++++. .++
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~G-a~Viv-~D~  251 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAMG-SIVYV-TEI  251 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEE-ECS
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEE-EeC
Confidence            58999999999999999998764 66544 454

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=91.19  E-value=0.35  Score=43.45  Aligned_cols=32  Identities=34%  Similarity=0.420  Sum_probs=25.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +||+|+|+|.+|..++..|..++-.+++ +.|.
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~-l~Di   37 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVV-LFDI   37 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEE-EECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEE-EEeC
Confidence            6899999999999999988876633544 4455

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=91.07  E-value=0.22  Score=46.18  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCc-EEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~-elv~i~~~   39 (296)
                      .+|+|+|+|.+|+.+++.+.... + +++.+ ++
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G-~~~V~v~-~r  199 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRG-VRAVLVA-NR  199 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC-CSEEEEE-CS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCC-CCEEEEE-eC
Confidence            58999999999999999998765 5 55544 44

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=91.06  E-value=0.22  Score=44.84  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=26.9

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||+|+|+|.+|..++..|.....++ +.+.|.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~-V~L~D~   41 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDV   41 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCE-EEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEEC
Confidence            369999999999999999998765456 566666

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=91.04  E-value=0.28  Score=44.06  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=25.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcC-CCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQR-DDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~-p~~elv~i~   37 (296)
                      ++|-|.|+ |.+|+.+++.|.++ ...+|+.+.
T Consensus        22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~   54 (344)
T 2gn4_A           22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS   54 (344)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEE
Confidence            68999999 99999999999887 433666654

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=91.02  E-value=0.18  Score=41.49  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=27.2

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCc-EEEEEe
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDV-ELVAVN   37 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~-elv~i~   37 (296)
                      |.. |++||-|.|+ |.+|+.+++.|.+++.. +++++.
T Consensus         1 M~~-~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~   38 (215)
T 2a35_A            1 MHS-TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA   38 (215)
T ss_dssp             ----CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCB
T ss_pred             CCC-CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEe
Confidence            543 4578999999 99999999999988753 666553

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=90.98  E-value=0.42  Score=47.77  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|..++..+.+.. .+++.. |+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG-~~V~l~-D~  343 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSN-YPVILK-EV  343 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTT-CCEEEE-CS
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCC-CEEEEE-EC
Confidence            58999999999999999998764 454444 44

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=90.73  E-value=0.42  Score=43.25  Aligned_cols=31  Identities=16%  Similarity=0.207  Sum_probs=26.1

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|-|.|+ |.+|+.+++.|.++...+|+++.
T Consensus        33 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~   64 (377)
T 2q1s_A           33 TNVMVVGGAGFVGSNLVKRLLELGVNQVHVVD   64 (377)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHHHHcCCceEEEEE
Confidence            68999999 99999999999987536777663

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=90.65  E-value=0.63  Score=39.54  Aligned_cols=93  Identities=18%  Similarity=0.151  Sum_probs=50.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .+|-|+|+|.+|...++.|.+.. .++..| ++.... .+..+.  +.       +.+.+..              ....
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~G-A~VtVv-ap~~~~-~l~~l~--~~-------~~i~~i~--------------~~~~   85 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEG-AAITVV-APTVSA-EINEWE--AK-------GQLRVKR--------------KKVG   85 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGC-CCEEEE-CSSCCH-HHHHHH--HT-------TSCEEEC--------------SCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE-CCCCCH-HHHHHH--Hc-------CCcEEEE--------------CCCC
Confidence            58999999999999999998864 455444 332222 111111  10       1111101              1112


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      ++.+    .++|+||-||+....-..+....+.|+...++|.+
T Consensus        86 ~~dL----~~adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p  124 (223)
T 3dfz_A           86 EEDL----LNVFFIVVATNDQAVNKFVKQHIKNDQLVNMASSF  124 (223)
T ss_dssp             GGGS----SSCSEEEECCCCTHHHHHHHHHSCTTCEEEC----
T ss_pred             HhHh----CCCCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence            3333    58999999998865544544444466644445443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=90.54  E-value=0.28  Score=43.25  Aligned_cols=36  Identities=22%  Similarity=0.163  Sum_probs=26.5

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+..| .||+|+|+|.+|..++..|.+.. .+++ +.++
T Consensus        11 ~~~~~-~~I~VIG~G~mG~~iA~~la~~G-~~V~-~~d~   46 (302)
T 1f0y_A           11 KKIIV-KHVTVIGGGLMGAGIAQVAAATG-HTVV-LVDQ   46 (302)
T ss_dssp             -CCCC-CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             ccccC-CEEEEECCCHHHHHHHHHHHhCC-CeEE-EEEC
Confidence            44333 68999999999999999998764 5655 4454

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=90.47  E-value=0.48  Score=46.55  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=27.3

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +++|-|.|+ |++|+.+++.|.+++..+++++.
T Consensus       315 ~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~  347 (660)
T 1z7e_A          315 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLD  347 (660)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred             CceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEE
Confidence            378999999 99999999999987557777764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.16  E-value=0.45  Score=42.71  Aligned_cols=82  Identities=17%  Similarity=0.327  Sum_probs=48.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      -+|.|+|+|-+|...+.++.... .+++++... .+-..++.     + ++    .      .  .        ++  .+
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~-~~~~~~~~-----~-lG----a------~--~--------v~--~~  227 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARN-EHKKQDAL-----S-MG----V------K--H--------FY--TD  227 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEEECSS-STTHHHHH-----H-TT----C------S--E--------EE--SS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCC-HHHHHHHH-----h-cC----C------C--e--------ec--CC
Confidence            47999999999999999888775 587776432 22111111     1 11    0      0  1        11  13


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA  121 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~  121 (296)
                      ++.+   ..++|+||+|++.....+.+-.+++.|-
T Consensus       228 ~~~~---~~~~D~vid~~g~~~~~~~~~~~l~~~G  259 (348)
T 3two_A          228 PKQC---KEELDFIISTIPTHYDLKDYLKLLTYNG  259 (348)
T ss_dssp             GGGC---CSCEEEEEECCCSCCCHHHHHTTEEEEE
T ss_pred             HHHH---hcCCCEEEECCCcHHHHHHHHHHHhcCC
Confidence            3333   2389999999998755555555555444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=90.16  E-value=1.6  Score=41.40  Aligned_cols=30  Identities=20%  Similarity=0.389  Sum_probs=25.9

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||.|.|+ |++|+.+++.|.+.+ .+|+++.
T Consensus       148 m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~  178 (516)
T 3oh8_A          148 LTVAITGSRGLVGRALTAQLQTGG-HEVIQLV  178 (516)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEE
Confidence            68999999 999999999998875 5777664

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=90.07  E-value=0.4  Score=43.95  Aligned_cols=105  Identities=19%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEec-CCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVND-PFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~-~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      .||.|.|. |-||..-+..+.+||+ ++++++.. . ++.+.++...  ....|++-    ...+.....-  ..+.++.
T Consensus        22 k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g-~nv~~L~~q~--~~f~p~~v----~v~d~~~~~~--~~~~v~~   92 (398)
T 2y1e_A           22 LRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG-AHLDTLLRQR--AQTGVTNI----AVADEHAAQR--VGDIPYH   92 (398)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECS-SCHHHHHHHH--HHHCCCCE----EESCHHHHHH--HCCCSEE
T ss_pred             eEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecC-CCHHHHHHHH--HHcCCCEE----EEcCHHHhhh--cCCEEEe
Confidence            78999999 9999999999999997 99999998 4 6665443322  12122221    1100000000  0001111


Q ss_pred             cC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491           84 FR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA  121 (296)
Q Consensus        84 ~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~  121 (296)
                      .. ...++. ...++|+|+.+.-...-..-.-.++++|.
T Consensus        93 G~~~l~~~a-~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK  130 (398)
T 2y1e_A           93 GSDAATRLV-EQTEADVVLNALVGALGLRPTLAALKTGA  130 (398)
T ss_dssp             STTHHHHHH-HHSCCSEEEECCCSGGGHHHHHHHHHHTC
T ss_pred             cHHHHHHHh-cCCCCCEEEEeCcCHHHHHHHHHHHHCCC
Confidence            00 001110 01468999999887766655556778885

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=90.03  E-value=0.3  Score=42.83  Aligned_cols=32  Identities=19%  Similarity=0.304  Sum_probs=26.4

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |++||-|.|+ |++|+.+++.|.+++ .++.++.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   33 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKNDG-NTPIILT   33 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEe
Confidence            4578999999 999999999999875 4666664

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=90.00  E-value=0.39  Score=44.16  Aligned_cols=108  Identities=16%  Similarity=0.128  Sum_probs=61.6

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---eeE--E--CC
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TLL--F--GE   76 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l~--~--~~   76 (296)
                      |.+|.|.|. |-||..-+..+.+||+ ++++++... ++.+.++...  ....|++-    ...+..   .|.  .  .+
T Consensus         9 ~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag-~nv~~L~~q~--~~f~p~~v----~v~d~~~~~~L~~~l~~~~   81 (406)
T 1q0q_A            9 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG-KNVTRMVEQC--LEFSPRYA----VMDDEASAKLLKTMLQQQG   81 (406)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES-SCHHHHHHHH--HHHCCSEE----EESSHHHHHHHHHHHHHTT
T ss_pred             ceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcC-CCHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHHhhcCC
Confidence            379999999 9999999999999997 999999875 6665443321  11122211    100000   000  0  01


Q ss_pred             EEEEEEecC-CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491           77 KPVAVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA  121 (296)
Q Consensus        77 ~~i~~~~~~-d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~  121 (296)
                      ..+.++... ...++. ...++|+|+.+.-.+.-..-.-.++++|.
T Consensus        82 ~~~~v~~G~~~l~~~a-~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK  126 (406)
T 1q0q_A           82 SRTEVLSGQQAACDMA-ALEDVDQVMAAIVGAAGLLPTLAAIRAGK  126 (406)
T ss_dssp             CCCEEEESHHHHHHHH-TCTTCCEEEECCSSGGGHHHHHHHHHTTC
T ss_pred             CCcEEEeCHHHHHHHh-cCCCCCEEEEccccHhHHHHHHHHHHCCC
Confidence            111222210 011110 01468999999887766665566788885

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=89.92  E-value=1.1  Score=38.94  Aligned_cols=30  Identities=27%  Similarity=0.404  Sum_probs=25.1

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||-|.|+ |++|+.+++.|.++. .+++++.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   31 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVD   31 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCC-CEEEEEe
Confidence            37999999 999999999999875 5666663

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=89.88  E-value=0.36  Score=43.84  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRD   29 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p   29 (296)
                      +||+|+|| |.||..|+-+|...+
T Consensus        25 vKVaViGAaG~IG~~la~~la~~~   48 (345)
T 4h7p_A           25 VKVAVTGAAGQIGYALVPLIARGA   48 (345)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHTT
T ss_pred             CEEEEECcCcHHHHHHHHHHHhcc
Confidence            79999998 999999998887655

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.86  E-value=0.26  Score=43.33  Aligned_cols=27  Identities=30%  Similarity=0.490  Sum_probs=21.0

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      |+. |++||+|+|+|.+|..+++.|.+.
T Consensus         4 m~~-~~m~I~iiG~G~mG~~~a~~L~~~   30 (317)
T 2qyt_A            4 MNQ-QPIKIAVFGLGGVGGYYGAMLALR   30 (317)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCC-CCCEEEEECcCHHHHHHHHHHHhC
Confidence            554 347999999999999999988765

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=89.86  E-value=0.23  Score=42.92  Aligned_cols=33  Identities=15%  Similarity=0.327  Sum_probs=26.5

Q ss_pred             CCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         4 ~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .|+|||-|.|+ |++|+.+++.|.++. .+++++.
T Consensus         3 ~M~m~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   36 (287)
T 3sc6_A            3 AMKERVIITGANGQLGKQLQEELNPEE-YDIYPFD   36 (287)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHSCTTT-EEEEEEC
T ss_pred             cceeEEEEECCCCHHHHHHHHHHHhCC-CEEEEec
Confidence            46569999999 999999999998875 6776664

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=89.76  E-value=0.25  Score=40.62  Aligned_cols=31  Identities=19%  Similarity=0.177  Sum_probs=24.1

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |+..|+|||+|..|..++..|.++. ++++-+
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~~G-~~V~v~   31 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTAAG-HQVHLF   31 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CCEEEE
Confidence            4567999999999999999998875 454333

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=89.68  E-value=1.1  Score=41.96  Aligned_cols=100  Identities=13%  Similarity=0.280  Sum_probs=58.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC--------hhhhhhcccccccCCCCcCcceeeeCCceeEECCEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS--------TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~--------~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      .||+|=|+|.+|..+++.|.+.. .+++++.|....        .+.+.+++......   . +.+....   -.++   
T Consensus       236 k~vaVQG~GnVG~~aa~~L~e~G-akvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~---~-g~v~~~~---~~~g---  304 (450)
T 4fcc_A          236 MRVSVSGSGNVAQYAIEKAMEFG-ARVITASDSSGTVVDESGFTKEKLARLIEIKSSR---D-GRVADYA---KEFG---  304 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEEETTEEEECTTCCCHHHHHHHHHHHTST---T-CCHHHHH---HHHT---
T ss_pred             CEEEEeCCChHHHHHHHHHHhcC-CeEEEEecCCceEEeCCCCCHHHHHHHHHHhccc---C-Ccccccc---ccCC---
Confidence            68999999999999999998874 899998865211        11111111110000   0 0000000   0000   


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEcc-CCccCHHHHHHHHHCCCC
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at-~~~~~~~~~~~~l~~G~k  122 (296)
                      ....   +.+++ |. .++|+.+=|. +...+.+.++.+.+.|||
T Consensus       305 ~~~~---~~~~i-~~-~~~DI~iPcAl~~~I~~~~a~~L~a~g~k  344 (450)
T 4fcc_A          305 LVYL---EGQQP-WS-VPVDIALPCATQNELDVDAAHQLIANGVK  344 (450)
T ss_dssp             CEEE---ETCCG-GG-SCCSEEEECSCTTCBCHHHHHHHHHTTCC
T ss_pred             cEEe---cCccc-cc-CCccEEeeccccccccHHHHHHHHhcCce
Confidence            0111   34555 74 6899999885 456677888888888996

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=89.56  E-value=0.26  Score=42.72  Aligned_cols=31  Identities=26%  Similarity=0.223  Sum_probs=23.9

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |++|+|+|-+|+.+++.|.... ++-+.|.++
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G-~~~I~v~nR  140 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMG-VKDIWVVNR  140 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCCEEEEES
T ss_pred             eEEEECcHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence            7999999999999999998865 422344444

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=89.54  E-value=0.88  Score=42.73  Aligned_cols=103  Identities=11%  Similarity=0.233  Sum_probs=58.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCC--------ChhhhhhcccccccC-CCCcCcceeeeCCceeEECCE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI--------STDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK   77 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~--------~~~~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~~~~   77 (296)
                      .||+|-|+|.+|..+++.|.+.. .++++|+|.+.        +.+.+..+..+.... +... +.+   ..    +.+.
T Consensus       240 ~~VaVQG~GnVG~~aa~~L~e~G-akvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~-~~~---~~----~~~a  310 (456)
T 3r3j_A          240 KKCLVSGSGNVAQYLVEKLIEKG-AIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLK-EYL---KY----SKTA  310 (456)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHT-CCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGG-GGG---GT----CSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchh-hhh---hc----CCCc
Confidence            58999999999999999988764 78888887521        111111111011111 0000 000   00    0010


Q ss_pred             EEEEEecCCCCCCCcccCCCcEEEEcc-CCccCHHHHHHHHHCCCCeEEe
Q 022491           78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        78 ~i~~~~~~d~~~i~~~~~~~DvV~~at-~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                        ...   +.+++ |. .++|+.+-|. +...+.+.++.+.+.+|| +|+
T Consensus       311 --~~v---~~~~i-~~-~~~DI~iPcA~~~~I~~~na~~l~~~~ak-~V~  352 (456)
T 3r3j_A          311 --KYF---ENQKP-WN-IPCDIAFPCATQNEINENDADLFIQNKCK-MIV  352 (456)
T ss_dssp             --EEE---CSCCG-GG-SCCSEEEECSCTTCBCHHHHHHHHHHTCC-EEE
T ss_pred             --eEe---CCccc-cc-cCccEEEeCCCccchhhHHHHHHHhcCCe-EEE
Confidence              111   34555 74 6899999985 556677788888777886 444

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=89.16  E-value=0.32  Score=43.59  Aligned_cols=30  Identities=27%  Similarity=0.327  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|||+|+|.||+.+++.+.... +++.+.+
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G-~~V~~~d  169 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWG-FPLRCWS  169 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTT-CCEEEEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEEEc
Confidence            58999999999999999998764 6776654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=89.14  E-value=0.3  Score=46.54  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC
Q 022491            7 IKIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      .||||||+|.+|..+++.|...
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s   76 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDS   76 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHH
T ss_pred             CEEEEEeEhHHHHHHHHHHHhc
Confidence            5899999999999999998875

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=89.05  E-value=0.63  Score=41.39  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++..+.....+.-+.+.|.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di   47 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDL   47 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            789999999999988888776553434455565

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=88.91  E-value=0.32  Score=42.44  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=26.4

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |++||-|.|+ |++|+.+++.|.+++ .+++++.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   38 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASG-EEVTVLD   38 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEe
Confidence            4579999999 999999999999875 5666664

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=88.80  E-value=0.7  Score=43.40  Aligned_cols=102  Identities=17%  Similarity=0.300  Sum_probs=60.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCC---------ChhhhhhcccccccC-CCCcCcceeeeCCceeEECC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI---------STDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGE   76 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~---------~~~~~a~~l~~~s~~-~~~~~~~v~~~~~~~l~~~~   76 (296)
                      .+|+|-|+|.+|..+++.|.+. ..++++|+|...         +.+++..++.+.... +.+. +.   ..  .+  +.
T Consensus       231 ~~v~VqG~GnVG~~~a~~L~~~-GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~-~y---~~--~~--~a  301 (449)
T 1bgv_A          231 KTVALAGFGNVAWGAAKKLAEL-GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQ-DY---AD--KF--GV  301 (449)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHH-TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTH-HH---HH--HH--TC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC-CCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChh-hc---cc--cc--CC
Confidence            6899999999999999998876 489999987411         111112222211111 1111 00   00  00  01


Q ss_pred             EEEEEEecCCCCCCCcccCCCcEEEEcc-CCccCHHHHHHHHHCCCCeEEe
Q 022491           77 KPVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        77 ~~i~~~~~~d~~~i~~~~~~~DvV~~at-~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +   ..   +++++ | ..++|+.+-|. +...+.+.++.+.+.||| +|+
T Consensus       302 ~---~i---~~~e~-~-~~~~Dil~P~A~~~~I~~~na~~l~a~g~k-iV~  343 (449)
T 1bgv_A          302 Q---FF---PGEKP-W-GQKVDIIMPCATQNDVDLEQAKKIVANNVK-YYI  343 (449)
T ss_dssp             E---EE---ETCCG-G-GSCCSEEECCSCTTCBCHHHHHHHHHTTCC-EEE
T ss_pred             E---Ee---Cchhh-h-cCCcceeeccccccccchhhHHHHHhcCCe-EEE
Confidence            1   11   23455 7 46899999976 456677888888888996 444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=88.67  E-value=0.3  Score=46.30  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=26.3

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC-CCcEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR-DDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i   36 (296)
                      |++||+|+|+|++|..++..|.++ +..+++.+
T Consensus         8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~   40 (481)
T 2o3j_A            8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVV   40 (481)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            347999999999999999998875 35677665

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=88.61  E-value=0.49  Score=42.14  Aligned_cols=36  Identities=28%  Similarity=0.330  Sum_probs=27.9

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |...  +||+|+|+|.+|..++..|...+..+ +.+.|+
T Consensus         1 M~~~--~kI~VIGaG~~G~~ia~~la~~g~~~-V~l~D~   36 (317)
T 2ewd_A            1 MIER--RKIAVIGSGQIGGNIAYIVGKDNLAD-VVLFDI   36 (317)
T ss_dssp             CCCC--CEEEEECCSHHHHHHHHHHHHHTCCE-EEEECS
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHhCCCce-EEEEeC
Confidence            5543  68999999999999999988765446 555565

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=88.39  E-value=0.31  Score=45.96  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv~i~~~   39 (296)
                      +||+|+|+|++|..++..|.++. ..+++.+ ++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~-d~   38 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVV-DV   38 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEE-CS
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEE-EC
Confidence            68999999999999999988763 4676655 44

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=88.36  E-value=0.49  Score=37.06  Aligned_cols=30  Identities=10%  Similarity=0.015  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .++.|+|+|++|+.+++.|.+.. .+++.|.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g-~~V~vid   33 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRG-QNVTVIS   33 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CCEEEEE
Confidence            47999999999999999998764 5666664

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=88.13  E-value=0.89  Score=41.03  Aligned_cols=93  Identities=16%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             eEEEEEec-CHHHHHHHHH--HHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCE--EEE
Q 022491            7 IKIGINGF-GRIGRLVARV--ALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK--PVA   80 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~--l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~--~i~   80 (296)
                      +||-|.|+ |+.++.++..  +.++++.++|+..++.... ++        +                 +.++..  .++
T Consensus        11 tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~--------~-----------------v~~G~~~~Gvp   65 (334)
T 3mwd_B           11 TKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQ--------K-----------------FYWGHKEILIP   65 (334)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEE--------E-----------------EEETTEEEEEE
T ss_pred             CeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccc--------e-----------------EeccCccCCce
Confidence            78999999 9988888776  5677889999998873221 00        0                 111111  245


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHH-CCCCeEEe
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK-GGAKKVVI  126 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~-~G~k~vvi  126 (296)
                      +|.  +.+++.-...++|+++.++|.......+.+++. +|+|.+|+
T Consensus        66 vy~--sv~ea~~~~p~~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vVi  110 (334)
T 3mwd_B           66 VFK--NMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAI  110 (334)
T ss_dssp             EES--SHHHHHHHCTTCCEEEECCCTTTHHHHHHHHTTSTTCCEEEE
T ss_pred             eeC--CHHHHhhcCCCCcEEEEecCHHHHHHHHHHHHHHCCCCEEEE
Confidence            554  333331000168999999998776665555566 89986665

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=88.12  E-value=1.7  Score=38.79  Aligned_cols=90  Identities=19%  Similarity=0.100  Sum_probs=53.1

Q ss_pred             eEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||.++|.|-+|.. ++++|.++. .++ .++|........ ..|  ..             .|  +       .++...
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G-~~V-~~~D~~~~~~~~-~~L--~~-------------~g--i-------~v~~g~   57 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAG-FEV-SGCDAKMYPPMS-TQL--EA-------------LG--I-------DVYEGF   57 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTT-CEE-EEEESSCCTTHH-HHH--HH-------------TT--C-------EEEESC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCC-CEE-EEEcCCCCcHHH-HHH--Hh-------------CC--C-------EEECCC
Confidence            68999999999996 888888775 444 445542221110 111  11             11  1       122222


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid  127 (296)
                      +++++.  ..++|+|+-+.+-........++.++|+  .|++
T Consensus        58 ~~~~l~--~~~~d~vV~Spgi~~~~p~~~~a~~~gi--~v~~   95 (326)
T 3eag_A           58 DAAQLD--EFKADVYVIGNVAKRGMDVVEAILNLGL--PYIS   95 (326)
T ss_dssp             CGGGGG--SCCCSEEEECTTCCTTCHHHHHHHHTTC--CEEE
T ss_pred             CHHHcC--CCCCCEEEECCCcCCCCHHHHHHHHcCC--cEEe
Confidence            444441  0368999998777666677778889998  4553

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=88.12  E-value=0.44  Score=43.36  Aligned_cols=30  Identities=30%  Similarity=0.537  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+.+++.+.... +++.+..
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~d  190 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFG-MNVLVWG  190 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEEeECHHHHHHHHHHHhCC-CEEEEEC
Confidence            58999999999999999998764 7876653

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=88.02  E-value=0.34  Score=44.97  Aligned_cols=31  Identities=23%  Similarity=0.173  Sum_probs=25.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|...++.+.... +++ .+.|+
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lG-a~V-~v~D~  221 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLG-AVV-SATDV  221 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEE-EEECS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CEE-EEEcC
Confidence            58999999999999999998875 554 45566

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=87.91  E-value=0.51  Score=42.27  Aligned_cols=30  Identities=33%  Similarity=0.572  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+.+++.+.... +++.+..
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~d  176 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFD-MDIDYFD  176 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 7776654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=87.91  E-value=0.42  Score=42.52  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ++|||+|+|.||+.+++.+.... +++.+.
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~  153 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALG-AQVRGF  153 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 676554

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=87.71  E-value=0.47  Score=42.69  Aligned_cols=29  Identities=28%  Similarity=0.580  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~  175 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMG-ATVIGE  175 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 776554

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=87.71  E-value=0.5  Score=42.55  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=26.4

Q ss_pred             CCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            2 AGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         2 ~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +..||++|-|.|+ |.+|+.+++.|.++. .+++++.
T Consensus        20 ~~~M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   55 (375)
T 1t2a_A           20 QGHMRNVALITGITGQDGSYLAEFLLEKG-YEVHGIV   55 (375)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             HhhcCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEE
Confidence            3345578999999 999999999998875 5777664

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=87.69  E-value=0.41  Score=43.12  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G-~~V~~~-d~  176 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWG-ATLQYH-EA  176 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSC-CEEEEE-CS
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEEE-CC
Confidence            68999999999999999987664 776655 44

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=87.69  E-value=0.63  Score=46.42  Aligned_cols=31  Identities=16%  Similarity=0.271  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|..++..+.+.. .+++ +.|+
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG-~~V~-l~D~  345 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKG-TPIL-MKDI  345 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CEEEEECCChhhHHHHHHHHhCC-CEEE-EEEC
Confidence            57999999999999999988764 4544 3454

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=87.65  E-value=0.53  Score=42.01  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCc------EEEEEecC
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDV------ELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~------elv~i~~~   39 (296)
                      |...  +||.|.|+ |.+|..+++.|...+.+      +++.+ |.
T Consensus         1 m~~~--mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~-D~   43 (327)
T 1y7t_A            1 MKAP--VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLL-EI   43 (327)
T ss_dssp             CCCC--EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CC
T ss_pred             CCCC--CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEE-eC
Confidence            5544  78999999 99999999999886643      66655 44

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=87.52  E-value=0.55  Score=42.40  Aligned_cols=30  Identities=33%  Similarity=0.505  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G-~~V~~~d  195 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFG-MKTIGYD  195 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998764 7776653

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=87.44  E-value=0.5  Score=42.57  Aligned_cols=29  Identities=21%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~  174 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFG-AKVIAY  174 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 776654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=87.41  E-value=0.53  Score=42.01  Aligned_cols=29  Identities=38%  Similarity=0.643  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~  173 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAFG-MRVVYH  173 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEEECHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 676554

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=87.38  E-value=0.47  Score=42.07  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=27.8

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCC-CcEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRD-DVELVAVND   38 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~~   38 (296)
                      ++||-|.|+ |++|+.+++.|.++. .++++++..
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~   58 (346)
T 4egb_A           24 AMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDA   58 (346)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             CCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEec
Confidence            378999999 999999999988764 588887753

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=87.33  E-value=0.57  Score=42.52  Aligned_cols=31  Identities=35%  Similarity=0.538  Sum_probs=25.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G-~~V~~~-d~  199 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFG-FNVLFY-DP  199 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE-CT
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEE-CC
Confidence            58999999999999999998764 776654 44

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=87.07  E-value=0.51  Score=42.39  Aligned_cols=30  Identities=33%  Similarity=0.476  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|||+|+|+||+.+++.+.... +++.+..
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d  185 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFG-VQRFLYT  185 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGT-CCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998764 5665543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=87.05  E-value=0.61  Score=42.29  Aligned_cols=31  Identities=32%  Similarity=0.425  Sum_probs=25.4

Q ss_pred             eEEEEEecCHHHHHHHHHHH-cCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~-~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+. ... +++.+. ++
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G-~~V~~~-d~  195 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLG-MKLVYY-DV  195 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CEEEEE-CS
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcC-CEEEEE-CC
Confidence            58999999999999999998 664 676654 44

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=86.77  E-value=0.6  Score=41.52  Aligned_cols=31  Identities=45%  Similarity=0.728  Sum_probs=25.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~-d~  173 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALG-MNILLY-DP  173 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             ceEEEEccCHHHHHHHHHHHHCC-CEEEEE-CC
Confidence            58999999999999999998764 776655 44

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=86.77  E-value=0.59  Score=42.06  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=25.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++|||+|+|+||+.+++.+.... +++.+. ++
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~-d~  181 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFN-MRILYY-SR  181 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCC-CEEEEE-CC
Confidence            68999999999999999998764 676554 44

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=86.74  E-value=0.59  Score=42.19  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++||+|+|+||+++++.+.... +++.+.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg-~~v~~~  170 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFG-MKVLCY  170 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             cEEEEECcchHHHHHHHhhcccC-ceeeec
Confidence            57999999999999999988764 777655

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=86.71  E-value=0.6  Score=41.66  Aligned_cols=31  Identities=42%  Similarity=0.598  Sum_probs=25.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~-d~  173 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMG-MKVLAY-DI  173 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEEE-CC
Confidence            58999999999999999998764 777655 44

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=86.69  E-value=0.68  Score=43.15  Aligned_cols=32  Identities=31%  Similarity=0.578  Sum_probs=28.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~~~   39 (296)
                      .+|+|+|+|.||+.+++.+.. . .+++++++++
T Consensus       213 ktvgI~G~G~VG~~vA~~l~~~~-G~kVv~~sD~  245 (419)
T 1gtm_A          213 KTIAIQGYGNAGYYLAKIMSEDF-GMKVVAVSDS  245 (419)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CCEEEEEECS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence            689999999999999999988 5 5899999876

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=86.65  E-value=0.6  Score=42.95  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G-~~V~~~  148 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALG-IRTLLC  148 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 776655

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=86.49  E-value=0.61  Score=42.00  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=25.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~-d~  177 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFG-AKVITY-DI  177 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEE-CC
Confidence            58999999999999999998764 776654 44

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=86.43  E-value=0.61  Score=42.01  Aligned_cols=31  Identities=35%  Similarity=0.505  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++|||+|+|.||+.+++.+.... +++.+. ++
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G-~~V~~~-d~  177 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFG-VKLYYW-SR  177 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGT-CEEEEE-CS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEE-CC
Confidence            58999999999999999998764 676544 44

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=86.05  E-value=0.67  Score=42.62  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+.+++.|.... +++.+.
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~  145 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLG-WKVLVC  145 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 776554

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=85.92  E-value=0.69  Score=41.38  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=27.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||+|+|+|.+|..++-.|...+.+.-+.+.|.
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di   38 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV   38 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            3799999999999999998887765554555565

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=85.89  E-value=0.97  Score=37.71  Aligned_cols=32  Identities=16%  Similarity=0.206  Sum_probs=27.5

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCC-CcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRD-DVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~   37 (296)
                      +++|-|.|+ |.+|+.+++.|.+++ ..+++.+.
T Consensus         4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~   37 (253)
T 1xq6_A            4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   37 (253)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEE
Confidence            368999999 999999999999885 57877764

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=85.76  E-value=0.64  Score=41.16  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=26.7

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCC-CcEEEEEe
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRD-DVELVAVN   37 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~   37 (296)
                      |+. | ++|-|.|+ |.+|+.+++.|.++. ..+++++.
T Consensus         1 Ms~-m-~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~   37 (348)
T 1oc2_A            1 MSQ-F-KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   37 (348)
T ss_dssp             --C-C-SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCc-C-cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEe
Confidence            664 3 68999999 999999999988753 57777764

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=85.66  E-value=0.83  Score=37.61  Aligned_cols=30  Identities=37%  Similarity=0.515  Sum_probs=25.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||-|.|+ |.+|+.+++.|.++. .+++++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g-~~V~~~~   31 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRG-HEVLAVV   31 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCC-CEEEEEE
Confidence            37999999 999999999999875 5777664

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=85.47  E-value=0.74  Score=42.70  Aligned_cols=29  Identities=28%  Similarity=0.403  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++||+|+|.||+.+++.+.... +++.+.
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G-~~V~~~  174 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLG-MYVYFY  174 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 776554

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=85.38  E-value=0.72  Score=41.78  Aligned_cols=30  Identities=23%  Similarity=0.479  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+|.+|..+++++.... .+++++.
T Consensus       189 ~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~  218 (366)
T 1yqd_A          189 KHIGIVGLGGLGHVAVKFAKAFG-SKVTVIS  218 (366)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            37999999999999999888765 5776664

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=85.24  E-value=0.83  Score=39.65  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=25.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||-|-|+ |+||+.|++.|.++. -+++++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G-~~V~~l~   31 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARG-HEVTLVS   31 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEE
Confidence            57999999 999999999998865 4666664

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=84.91  E-value=2.5  Score=38.71  Aligned_cols=31  Identities=16%  Similarity=0.171  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+|-+|...+.++....--+++++.
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  245 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHAGASKVILSE  245 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            3699999999999999988877533676664

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=84.82  E-value=1.2  Score=41.88  Aligned_cols=34  Identities=26%  Similarity=0.215  Sum_probs=24.0

Q ss_pred             eeEEEEEecCHH--HHHHHHHHHcCCCc-EEEEEecC
Q 022491            6 KIKIGINGFGRI--GRLVARVALQRDDV-ELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~i--G~~l~r~l~~~p~~-elv~i~~~   39 (296)
                      ++||+|+|+|.+  |..++..|...+.+ .-+.+.|.
T Consensus         5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di   41 (450)
T 3fef_A            5 QIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDL   41 (450)
T ss_dssp             CEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECS
T ss_pred             CCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeC
Confidence            479999999885  67888887765432 23455565

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=84.66  E-value=0.29  Score=43.11  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=24.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .++.|+|+|-+|+.+++.|.... ++-+.|.++
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~G-~~~v~i~~R  159 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTHG-VQKLQVADL  159 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CSEEEEECS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEEC
Confidence            57999999999999999998875 533444455

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=84.49  E-value=0.96  Score=39.43  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=26.0

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .++|-|.|+ |.+|+.+++.|.++. .+++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   33 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCG   33 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEc
Confidence            368999999 999999999999875 6766653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=84.49  E-value=0.62  Score=41.70  Aligned_cols=31  Identities=16%  Similarity=0.293  Sum_probs=25.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+|-+|...++++......+++++.
T Consensus       173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~  203 (345)
T 3jv7_A          173 STAVVIGVGGLGHVGIQILRAVSAARVIAVD  203 (345)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            3699999999999999888776556777774

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=84.45  E-value=0.84  Score=40.88  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=25.3

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +++||+|+|+ |++|..++..|...+.+.-+.+.|.
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di   42 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV   42 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEES
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeC
Confidence            4579999996 9999999999887654333333454

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=84.37  E-value=0.46  Score=43.20  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=25.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|.|+|+|.+|+.+++.+.... .+++.+ ++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~G-a~V~v~-dr  198 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLG-AQVQIF-DI  198 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-ES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEE-eC
Confidence            58999999999999999998876 465554 44

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=84.32  E-value=1  Score=42.21  Aligned_cols=41  Identities=20%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHc---CCC-cEEEEEecCCCChhhhh
Q 022491            6 KIKIGINGF-GRIGRLVARVALQ---RDD-VELVAVNDPFISTDYMT   47 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~---~p~-~elv~i~~~~~~~~~~a   47 (296)
                      |.||.|.|. |-||..-+..+.+   ||+ ++++++... .+.+.++
T Consensus        77 mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg-~Nv~lL~  122 (488)
T 3au8_A           77 PINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVN-KSVNELY  122 (488)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEES-SCHHHHH
T ss_pred             ceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcC-CCHHHHH
Confidence            368999999 9999999999998   665 999999875 6665443

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=84.26  E-value=0.86  Score=40.70  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=25.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcC-CCcEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQR-DDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~-p~~elv~i~~~   39 (296)
                      +||+|+|+ |.+|..++.+|..+ +...-+.+.|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di   35 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI   35 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEec
Confidence            48999996 99999999998876 65444444454

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=84.20  E-value=0.57  Score=40.73  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=26.2

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcC-CCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQR-DDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~-p~~elv~i~   37 (296)
                      ++||-|.|+ |.+|+.+++.|.++ +..+++++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~   35 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASD   35 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEc
Confidence            468999999 99999999999876 446776664

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=83.99  E-value=0.95  Score=39.34  Aligned_cols=30  Identities=27%  Similarity=0.191  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .++.|+|+|-+|+.+++.|.+.. .++...+
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~  149 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQ-QNIVLAN  149 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CEEEEEE
Confidence            58999999999999999998877 5655443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=83.92  E-value=0.89  Score=40.76  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=24.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |+.+..-||||+|+|.+|+.++..+.++. +++ .+.|+
T Consensus         1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G-~~V-~l~D~   37 (319)
T 3ado_A            1 MASPAAGDVLIVGSGLVGRSWAMLFASGG-FRV-KLYDI   37 (319)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CCCCCCCeEEEECCcHHHHHHHHHHHhCC-CeE-EEEEC
Confidence            67665568999999999999999888775 454 34455

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=83.87  E-value=1.6  Score=39.56  Aligned_cols=30  Identities=23%  Similarity=0.281  Sum_probs=23.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      -+|.|+|+|.+|...++++....--+++++
T Consensus       184 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  213 (370)
T 4ej6_A          184 STVAILGGGVIGLLTVQLARLAGATTVILS  213 (370)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            479999999999999998887653266655

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=83.85  E-value=0.81  Score=41.99  Aligned_cols=25  Identities=16%  Similarity=0.226  Sum_probs=21.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCc
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDV   31 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~   31 (296)
                      +||+|+|+ |.+|..++-.|...+-+
T Consensus        33 ~KV~ViGAaG~VG~~la~~l~~~~l~   58 (375)
T 7mdh_A           33 VNIAVSGAAGMISNHLLFKLASGEVF   58 (375)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTT
T ss_pred             CEEEEECCCChHHHHHHHHHHcCCcC
Confidence            89999996 99999999988876543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=83.80  E-value=1.3  Score=38.57  Aligned_cols=32  Identities=22%  Similarity=0.146  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .++.|+|+|-+|+.+++.|.+..--++ .|.++
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~G~~~v-~i~~R  152 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQAGPSEL-VIANR  152 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTCCSEE-EEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCCEE-EEEeC
Confidence            579999999999999999988752244 44444

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=83.74  E-value=0.87  Score=40.88  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=27.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||+|+|+|.+|..++-.|...+.+.-+.+.|.
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di   42 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            4799999999999999998887775544555565

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=83.33  E-value=1.3  Score=41.13  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=26.4

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCc-EEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~-elv~i   36 (296)
                      |..++..+|+|||+|..|..+++.|.++... +++.+
T Consensus         1 M~~~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~   37 (447)
T 2gv8_A            1 MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLF   37 (447)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             CCCCCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEE
Confidence            5444457999999999999999999887522 55544

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=82.73  E-value=1.2  Score=40.09  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=26.1

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |+.+|-|.|+ |.+|+.+++.|.++. .+|+++.
T Consensus        27 M~k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~   59 (381)
T 1n7h_A           27 PRKIALITGITGQDGSYLTEFLLGKG-YEVHGLI   59 (381)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             hCCeEEEEcCCchHHHHHHHHHHHCC-CEEEEEe
Confidence            4368999999 999999999999875 5776664

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=82.72  E-value=1.5  Score=38.18  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .++.|+|+|-+|+.++..|.... ++-+.|.++
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~G-~~~i~v~nR  151 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNSG-FEKLKIYAR  151 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHTT-CCCEEEECS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEeC
Confidence            47999999999999999998875 433344444

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=82.71  E-value=4.3  Score=37.84  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=52.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||.|+|.|.+|..+++.|.++. .++. ++|..... ......|  ..             .|  +       +++...
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G-~~V~-~~D~~~~~~~~~~~~L--~~-------------~g--i-------~~~~g~   63 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLG-AIVT-VNDGKPFDENPTAQSL--LE-------------EG--I-------KVVCGS   63 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTT-CEEE-EEESSCGGGCHHHHHH--HH-------------TT--C-------EEEESC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCC-CEEE-EEeCCcccCChHHHHH--Hh-------------CC--C-------EEEECC
Confidence            68999999999999999998876 4443 34441110 0000111  00             11  1       122222


Q ss_pred             CCCCCCcccCC-CcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           86 NPEEIPWAKTG-AEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        86 d~~~i~~~~~~-~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +++++   ..+ +|+|+-+.+-..+......+.+.|+  .|+
T Consensus        64 ~~~~~---~~~~~d~vv~spgi~~~~p~~~~a~~~gi--~v~  100 (451)
T 3lk7_A           64 HPLEL---LDEDFCYMIKNPGIPYNNPMVKKALEKQI--PVL  100 (451)
T ss_dssp             CCGGG---GGSCEEEEEECTTSCTTSHHHHHHHHTTC--CEE
T ss_pred             ChHHh---hcCCCCEEEECCcCCCCChhHHHHHHCCC--cEE
Confidence            34433   134 8999998887666667777888898  355

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=82.31  E-value=1.7  Score=38.83  Aligned_cols=32  Identities=25%  Similarity=0.277  Sum_probs=24.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++..+...+ +.-+.+.|.
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g-~~~v~l~D~   40 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKE-LADVVLVDI   40 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CCeEEEEec
Confidence            58999999999999999888765 333444565

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=82.19  E-value=1.6  Score=37.68  Aligned_cols=33  Identities=15%  Similarity=0.154  Sum_probs=25.8

Q ss_pred             CCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         3 ~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ..|+.+|.|+|+|..|...+..|.++. .+++-+
T Consensus        12 ~~~~~~vvIIG~G~aGl~aA~~l~~~g-~~v~li   44 (323)
T 3f8d_A           12 PGEKFDVIIVGLGPAAYGAALYSARYM-LKTLVI   44 (323)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CCCccCEEEECccHHHHHHHHHHHHCC-CcEEEE
Confidence            335679999999999999999988764 555444

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=82.11  E-value=1.2  Score=40.15  Aligned_cols=32  Identities=31%  Similarity=0.459  Sum_probs=24.9

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEec
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~   38 (296)
                      -+|.|+|+ |.+|...++++......+++++..
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~  205 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATAS  205 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC
Confidence            47999996 999999988877644578777753

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=82.08  E-value=1.3  Score=39.85  Aligned_cols=29  Identities=21%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |||.|+|+|.+|..++..|.++. ++++-+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G-~~v~v~   30 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHG-IKVTIY   30 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CCEEEE
Confidence            68999999999999999998875 564433

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=82.01  E-value=1.5  Score=39.83  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |+.+++.+|.|+|+|.+|..++..|.++. ++++-+
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~G-~~v~v~   55 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNG-IDVSVY   55 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEE
Confidence            44333468999999999999999998874 665544

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=82.01  E-value=1.4  Score=38.78  Aligned_cols=31  Identities=26%  Similarity=0.456  Sum_probs=26.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +||-|.|+ |++|+.+++.|.+++..+++++.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~   32 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLD   32 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            37999999 99999999999987557777764

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=81.99  E-value=0.88  Score=40.86  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=26.6

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||-|.|+ |.+|+.+++.|.+++.++++.+.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d   32 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVH   32 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEC
Confidence            47999999 99999999999988766777663

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=81.91  E-value=0.66  Score=39.59  Aligned_cols=31  Identities=13%  Similarity=0.081  Sum_probs=25.8

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ||.+|-|.|+ |.+|+.+++.|.++. .+++.+
T Consensus         1 M~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~   32 (267)
T 3ay3_A            1 MLNRLLVTGAAGGVGSAIRPHLGTLA-HEVRLS   32 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHGGGGGGTE-EEEEEC
T ss_pred             CCceEEEECCCCHHHHHHHHHHHhCC-CEEEEE
Confidence            4578999999 999999999998875 566555

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=81.86  E-value=0.87  Score=36.63  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC-CCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQR-DDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i~   37 (296)
                      .+|.|+|+|++|+.+++.|.+. . .+++.+.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid   70 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYG-KISLGIE   70 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHC-SCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhccC-CeEEEEE
Confidence            4799999999999999999765 4 4666553

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=81.81  E-value=1.3  Score=39.55  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=26.2

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCc------EEEEEecC
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDV------ELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~------elv~i~~~   39 (296)
                      ++||+|+|+ |.+|..++..|...+.+      ||+. .|.
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l-~Di   44 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQL-LEI   44 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-ECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEE-EcC
Confidence            479999999 99999999999876643      5555 455

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=81.75  E-value=1.2  Score=40.95  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=23.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |||+|+|+|++|..++..|.+ . .+++.+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G-~~V~~~   28 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-Q-NEVTIV   28 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-C-CEEEEE
Confidence            379999999999999999887 3 676655

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=81.10  E-value=1  Score=40.37  Aligned_cols=31  Identities=19%  Similarity=0.227  Sum_probs=23.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+|.+|...++++....--+++++.
T Consensus       168 ~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~  198 (352)
T 3fpc_A          168 DTVCVIGIGPVGLMSVAGANHLGAGRIFAVG  198 (352)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEEC
Confidence            3699999999999999888766522666654

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=81.07  E-value=1.2  Score=38.43  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCC
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDD   30 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~   30 (296)
                      ++||-|.|+ |++|+.+++.|.++..
T Consensus         6 ~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            6 SMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            478999999 9999999999998753

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=80.73  E-value=1.5  Score=39.10  Aligned_cols=31  Identities=23%  Similarity=0.229  Sum_probs=26.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcC-CCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQR-DDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~-p~~elv~i~   37 (296)
                      ++|-|.|+ |++|+.+++.|.++ ...+|+++.
T Consensus        11 ~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~   43 (362)
T 3sxp_A           11 QTILITGGAGFVGSNLAFHFQENHPKAKVVVLD   43 (362)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEE
Confidence            68999999 99999999999884 357777775

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=80.33  E-value=1.5  Score=41.42  Aligned_cols=30  Identities=13%  Similarity=0.299  Sum_probs=24.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      +|||+|+|+|++|..++..|.+.. .+++.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G-~~V~~~   37 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIG-HDVFCL   37 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCC-CEEEEE
Confidence            479999999999999999998764 455554

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=80.15  E-value=2.6  Score=42.20  Aligned_cols=31  Identities=29%  Similarity=0.518  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|..++..+.+.. ++++-+ |.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG-~~V~l~-D~  347 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVG-ISVVAV-ES  347 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE-CS
T ss_pred             cEEEEEcccHHHHHHHHHHHhCC-Cchhcc-cc
Confidence            58999999999999998888764 665443 44

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=80.12  E-value=1.3  Score=40.21  Aligned_cols=30  Identities=27%  Similarity=0.506  Sum_probs=23.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+|.+|...++++.... .+++++.
T Consensus       196 ~~VlV~GaG~vG~~aiqlak~~G-a~Vi~~~  225 (369)
T 1uuf_A          196 KKVGVVGIGGLGHMGIKLAHAMG-AHVVAFT  225 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            37999999999999999887764 6766654

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=80.12  E-value=1.4  Score=39.24  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=25.4

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      ++|-|.|+ |.+|+.+++.|.+....+++++.
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~   78 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVD   78 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            68999999 99999999999987645666664

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=80.04  E-value=1.6  Score=41.75  Aligned_cols=31  Identities=42%  Similarity=0.654  Sum_probs=25.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++|||+|+|.||+.+++.|.... +++.+. ++
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G-~~V~~~-d~  173 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFG-AYVVAY-DP  173 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE-CT
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCC-CEEEEE-CC
Confidence            68999999999999999998764 676655 55

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1u8fo2	164	d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate de	2e-76
d3cmco2	163	d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate de	5e-73
d1rm4a2	163	d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate de	2e-71
d1u8fo1	169	c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp	6e-70
d1obfo2	162	d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate de	6e-69
d1dssg1	169	c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosp	2e-68
d1rm4a1	172	c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosp	2e-66
d2g82a2	162	d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate de	5e-64
d1gado1	166	c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosp	6e-63
d1k3ta2	169	d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate de	1e-62
d1hdgo1	169	c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosp	1e-61
d3cmco1	171	c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosp	2e-61
d2b4ro1	166	c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosp	3e-61
d1k3ta1	190	c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosp	3e-59
d1cf2o1	171	c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosp	3e-54
d2g82a1	168	c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosp	6e-52
d1obfo1	173	c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosp	1e-50
d2czca2	172	c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosp	2e-49
d1b7go1	178	c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosp	1e-43
d1cf2o2	165	d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate de	4e-39
d1b7go2	162	d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate de	5e-37
d1f06a1	170	c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid de	3e-07
d2czca1	162	d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate de	4e-07
d1ydwa1	184	c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductas	3e-06
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	5e-06
d1nvmb1	157	c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge	4e-05
d1lc0a1	172	c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {	8e-05
d1zh8a1	181	c.2.1.3 (A:4-131,A:276-328) Hypothetical protein T	1e-04
d2g17a1	179	c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamy	1e-04
d1tlta1	164	c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM	2e-04
d1h6da1	221	c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxid	3e-04
d1vkna1	176	c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamy	4e-04
d2nvwa1	237	c.2.1.3 (A:2-154,A:374-457) Galactose/lactose meta	0.003

>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score =  228 bits (582), Expect = 2e-76
 Identities = 108/140 (77%), Positives = 119/140 (85%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           CTTNCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A  NIIP+ST
Sbjct: 1   CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60

Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
           GAAKAVGKV+P LNGKLTGM+FRVPT +VSVVDLT RLEK A Y++IK  +K+ SEG LK
Sbjct: 61  GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK 120

Query: 277 GILGYTEEDVVSTDFVGDSR 296
           GILGYTE  VVS+DF  D+ 
Sbjct: 121 GILGYTEHQVVSSDFNSDTH 140

>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 163

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score =  219 bits (560), Expect = 5e-73
 Identities = 85/140 (60%), Positives = 105/140 (75%), Gaps = 1/140 (0%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           CTTNCLAP AKV+H++FGIV G+MTTVHS T  Q+ +D P  KD R  RAA+ +IIP++T
Sbjct: 1   CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLP-HKDLRRARAAAESIIPTTT 59

Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
           GAAKAV  VLP L GKL GM+ RVPT +VSVVDL   LEKE T EE+  A+K  +EG+LK
Sbjct: 60  GAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELK 119

Query: 277 GILGYTEEDVVSTDFVGDSR 296
           GIL Y+EE +VS D+ G + 
Sbjct: 120 GILAYSEEPLVSRDYNGSTV 139

>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 163

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  215 bits (550), Expect = 2e-71
 Identities = 73/140 (52%), Positives = 94/140 (67%), Gaps = 1/140 (0%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           CTTNCLAP  KV+  KFGI++G MTT HS T  Q+ +D    +D R  RAA  NI+P+ST
Sbjct: 1   CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTST 59

Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
           GAAKAV  VLP L GKL G++ RVPT +VSVVDL V++ K+   EE+  A +E ++ +LK
Sbjct: 60  GAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 119

Query: 277 GILGYTEEDVVSTDFVGDSR 296
           GIL   +E +VS DF     
Sbjct: 120 GILSVCDEPLVSIDFRCTDV 139

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score =  212 bits (540), Expect = 6e-70
 Identities = 85/164 (51%), Positives = 113/164 (68%), Gaps = 2/164 (1%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NGFGRIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++    +K
Sbjct: 1   KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG-TVK 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             +   L+    P+ +F  R+P +I W   GAEYVVESTGVFT  +KA AHL+GGAK+V+
Sbjct: 60  A-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 118

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVI 169
           ISAPS DAPMFV+GVN ++Y   L I+SNAS        +  ++
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162

>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

 Score =  209 bits (533), Expect = 6e-69
 Identities = 72/141 (51%), Positives = 96/141 (68%), Gaps = 1/141 (0%)

Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
           SCTTNCLAPL K ++DK G+ +GLMTTVH+ T  Q   D    +D R  R+A+ ++IP+ 
Sbjct: 1   SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTK 59

Query: 216 TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 275
           TGAA AVG VLP L+GKL G + RVPT++VS+VDL+   ++  T EE+   +K  SEG+L
Sbjct: 60  TGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGEL 119

Query: 276 KGILGYTEEDVVSTDFVGDSR 296
           KGIL Y  E +VS D+  D  
Sbjct: 120 KGILDYNTEPLVSVDYNHDPA 140

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

 Score =  208 bits (530), Expect = 2e-68
 Identities = 93/168 (55%), Positives = 117/168 (69%), Gaps = 3/168 (1%)

Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL+    ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K  
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKA- 58

Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127
           ++  L+   K + VF    PE IPW+K GAEY+VESTGVFT  +KA+AH KGGAKKV+IS
Sbjct: 59  EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118

Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
           APS DAPMFV GVN ++Y  ++ +VSNAS        +  +I     +
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  203 bits (517), Expect = 2e-66
 Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 8/173 (4%)

Query: 7   IKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
           +K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +  +  
Sbjct: 1   LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADV- 58

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
           K   +  +    K + V   RNP  +PW   G + V+E TGVF D+D A  HL+ GAKKV
Sbjct: 59  KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 118

Query: 125 VISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCT---TNCLAPLAKVIHDKF 173
           +I+AP K D P +VVGVNE+ Y     I+SNAS     +  +  LA ++ +K+
Sbjct: 119 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171

>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

 Score =  196 bits (500), Expect = 5e-64
 Identities = 73/140 (52%), Positives = 96/140 (68%), Gaps = 1/140 (0%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           CTTN LAP+ KV+ + FG+ + LMTTVHS T  Q+ +D P  KD R  RAA+ NIIP++T
Sbjct: 1   CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTT 59

Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
           GAAKA   VLP+L G+  GM+ RVPT   S+ D+T  L++E T EE+  A+K  +EG LK
Sbjct: 60  GAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLK 119

Query: 277 GILGYTEEDVVSTDFVGDSR 296
           GIL YTE+++V  D V D  
Sbjct: 120 GILAYTEDEIVLQDIVMDPH 139

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

 Score =  193 bits (493), Expect = 6e-63
 Identities = 76/165 (46%), Positives = 103/165 (62%), Gaps = 5/165 (3%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KD   L+   K + V   R+P  + W + G + V E+TG+F   + A  H+  GAKKVV+
Sbjct: 60  KDGH-LIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIH 170
           + PSKD  PMFV G N  +Y  + DIVSNAS  T     +  +I 
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASNETGYSNKVLDLIA 162

>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 169

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  193 bits (491), Expect = 1e-62
 Identities = 92/142 (64%), Positives = 114/142 (80%), Gaps = 1/142 (0%)

Query: 156 SCTTNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS 214
           SCTTNCLAP+  V + + FG+  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS
Sbjct: 1   SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60

Query: 215 STGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
           +TGAAKAVG V+P+  GKLTGMSFRVPT DVSVVDLT    ++ + +EI  A+K  S+  
Sbjct: 61  TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTY 120

Query: 275 LKGILGYTEEDVVSTDFVGDSR 296
           +KGILGYT+E++VS DF+ D+R
Sbjct: 121 MKGILGYTDEELVSADFINDNR 142

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

 Score =  191 bits (486), Expect = 1e-61
 Identities = 68/172 (39%), Positives = 104/172 (60%), Gaps = 8/172 (4%)

Query: 8   KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           ++ INGFGRIGRLV R+  +R   D+E+VA+ND    T  + ++ KYDSVH ++     K
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57

Query: 66  VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
           V+  E +L+   K + VF   +P ++PW   G ++V+ESTGVF +++KA  HL+ GAKKV
Sbjct: 58  VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117

Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
           +I+AP+K   +  V+G NE + KPE  I+S AS        +   +     +
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLELLLKM 169

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score =  190 bits (484), Expect = 2e-61
 Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 7/175 (4%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+        
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAE--VS 58

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            +   L+   K + V   R+PE + W + G + VVESTG FT ++ AA HL+ GAKKV+I
Sbjct: 59  VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118

Query: 127 SAPS-KDAPMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
           SAP+  +    V+GVN+ +Y P+   ++SNAS  T     +  +    +   +GL
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  189 bits (482), Expect = 3e-61
 Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 6/169 (3%)

Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           K+GINGFGRIGRLV R A  R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+        
Sbjct: 2   KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE--VTH 59

Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127
            +  LL GEK V+VF  ++P +IPW K   + V ESTGVF  K+ A++HLKGGAKKV++S
Sbjct: 60  ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 119

Query: 128 APS-KDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
           AP   D P++V+G+N  +Y  +  IVSNAS          +V+     I
Sbjct: 120 APPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 190

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  185 bits (471), Expect = 3e-59
 Identities = 71/183 (38%), Positives = 102/183 (55%), Gaps = 13/183 (7%)

Query: 6   KIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
            IK+GINGFGRIGR+V +   +      ++++VAV D     +Y  Y  +YD+VHG++K+
Sbjct: 2   PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61

Query: 62  NELKVKDEKT-------LLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAA 114
                K   +       ++ G + + V   RNP ++PW K G EYV+ESTG+FT K  A 
Sbjct: 62  EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121

Query: 115 AHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDK 172
            HL+GGA+KVVISAP+   A   V+GVN  EY P E  +VSNA         +  ++   
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM 181

Query: 173 FGI 175
              
Sbjct: 182 ASK 184

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

 Score =  172 bits (436), Expect = 3e-54
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 16/183 (8%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             + ING+G +G+ VA    Q+DD++++ V+             K               
Sbjct: 2   KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT-RPDFEARMALKKGYDLY-------VA 53

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             E+  LF +  + V G      +      A+ V++ T           + + G K +  
Sbjct: 54  IPERVKLFEKAGIEVAG-----TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108

Query: 127 SAPSKDAP--MFVVGVNEKEY-KPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
                +     F    N +E    +   V       + +  + ++  DK+  +      +
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKAM 168

Query: 184 HSI 186
           + +
Sbjct: 169 NIL 171

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

 Score =  166 bits (420), Expect = 6e-52
 Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 9/171 (5%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R+   R  VE+  +ND       + ++ KYDS++ ++       
Sbjct: 1   MKVGINGFGRIGRQVFRILHSR-GVEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VA 56

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D++ L    K +     ++P+EIPWA+ G   V+ESTGVFTD DKA AHL+GGAKKV+I
Sbjct: 57  YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116

Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCT---TNCLAPLAKVIHDK 172
           +AP+K   +  V+GVN + Y P    I+SNAS      N +A L +++  K
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 173

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

 Score =  162 bits (412), Expect = 1e-50
 Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 22/187 (11%)

Query: 7   IKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           I++ ING+GRIGR + R   +     D+E+VA+ND         ++ +YD+ HG++    
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPGT- 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           + V     ++ G+K + V   RNP ++PW     + V+E TG FT K+KA AH+KGGAKK
Sbjct: 60  VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118

Query: 124 VVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
           V+ISAP         V GVN    K    ++SNA               +++G    ++ 
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLD 164

Query: 182 TVHSITA 188
           T  ++ +
Sbjct: 165 TTVALMS 171

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  159 bits (404), Expect = 2e-49
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 16/179 (8%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NG+G IG+ VA    ++DD+EL+ +       D+  Y  K   +       E  
Sbjct: 2   KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            + EK            GF     +       + +V++T           + K G K + 
Sbjct: 60  PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108

Query: 126 ISAPSKDA--PMFVVGVNEKEY-KPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
                 D     FV   N +         V       + +  + ++      I +   +
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  145 bits (366), Expect = 1e-43
 Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 32/191 (16%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           + + +NG+G IG+ VA   +++ D++LV V     + +      +   ++         V
Sbjct: 2   VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIY---------V 52

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             +    F E  + V        +      ++ VV++T           +L+   +  + 
Sbjct: 53  PQQSIKKFEESGIPV-----AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIF 106

Query: 127 SAPSKDA---PMFVVGVNEKEY--KPELDIVSNASCTTNCLAPL------------AKVI 169
               K       F    N  E   K  + +VS +      +  +             ++ 
Sbjct: 107 QGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRIT 166

Query: 170 HDKFGIVEGLM 180
           ++  GI++G +
Sbjct: 167 NESLGILKGYL 177

>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 165

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

 Score =  133 bits (335), Expect = 4e-39
 Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 15/145 (10%)

Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
           SC T  L    K +HD FGI +     V                  +  +     IIP+ 
Sbjct: 1   SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA-----------DPAQVSKGPINAIIPNP 49

Query: 216 TGAAKAVGK-VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
                  G  V   L+  +  M+  VPT  +   ++ V +E+  T ++I +  ++     
Sbjct: 50  PKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVI 109

Query: 275 LKGI---LGYTEEDVVSTDFVGDSR 296
           L      L  T E +     +G SR
Sbjct: 110 LISAEDGLTSTAEIMEYAKELGRSR 134

>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  127 bits (320), Expect = 5e-37
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 17/141 (12%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           C T  L      ++    + +   T V      +         + + G   S    P++ 
Sbjct: 1   CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK---------EVKKGPINSLVPDPATV 51

Query: 217 GAA--KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-- 272
            +   K V  V+  L   +  M+   PT  + +  + + L+ +   ++I + ++      
Sbjct: 52  PSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIV 109

Query: 273 --GKLKGILGYTEEDVVSTDF 291
                       E   V+ D 
Sbjct: 110 LISSKYDAEATAELVEVARDL 130

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 5  KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
            I++ I G+G +GR V ++  ++ D++LV +     + D  T +F    V      
Sbjct: 2  TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADD 58

>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 16/144 (11%)

Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
           SC T  L      I +    V             ++  D          R     I P+ 
Sbjct: 1   SCNTTGLVRTLSAIREYADYVY--------AVMIRRAAD-----PNDTKRGPINAIKPTV 47

Query: 216 TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 275
              +     V   +   +  M+F VPT  + V  + V L+K  T +++ +  +  +   L
Sbjct: 48  EVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLL 107

Query: 276 KGI---LGYTEEDVVSTDFVGDSR 296
                    T + +     +    
Sbjct: 108 FEKEKGFDSTAQIIEFARDLHREW 131

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 9/57 (15%), Positives = 18/57 (31%)

Query: 6  KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
          +I+IG+ G   I R V+R      +  +  V    +                +   +
Sbjct: 1  QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGS 57

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 12/131 (9%)

Query: 4   DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND----PFISTDYMTYMFKYD-SVHG 57
           D  I++ I G  GR+GR + + AL  + V+L A  +      + +D           V  
Sbjct: 2   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61

Query: 58  QWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL 117
           Q   + +K   +  + F               + + +   + +V  T  F +  K A   
Sbjct: 62  QSSLDAVKDDFDVFIDFTRPEGT------LNHLAFCRQHGKGMVIGTTGFDEAGKQAIRD 115

Query: 118 KGGAKKVVISA 128
                 +V +A
Sbjct: 116 AAADIAIVFAA 126

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 30/171 (17%)

Query: 5   KKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           +K+K+ I G G IG  L+ +V      +E+ A+    I               G      
Sbjct: 3   QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG--IDAASDGLARAQR--MGVTTTYA 58

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
                 K   F +             +                  ++        G   +
Sbjct: 59  GVEGLIKLPEFADIDFVFDATSASAHV-----------------QNEALLRQAKPG--IR 99

Query: 124 VVISAPSKDAPMFVVGVNEKE--YKPELDIVSNASCTT----NCLAPLAKV 168
           ++   P+   P  V  VN +E   K  +++V+ A          LA   ++
Sbjct: 100 LIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERM 150

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
          +    K  + + G GR G +  R          + +   
Sbjct: 2  ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 5  KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
          +KI++GI G G   R +   AL+      E+ AV     S          +         
Sbjct: 2  RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEE 61

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 17/175 (9%), Positives = 41/175 (23%), Gaps = 6/175 (3%)

Query: 7   IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           +   I G  G  G  +     +   + + A+     S D    +              L+
Sbjct: 2   LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQ 61

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
              +      +  V      +      A    +       +               K   
Sbjct: 62  PMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYE--KYYG 119

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELD---IVSNASCTTNCLAPLAKVIHDKFGIVE 177
            +    +     V    +    +L+   +++         A   +  + +FG  E
Sbjct: 120 FTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAE 174

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 1/58 (1%)

Query: 6  KIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
          K++IG+ G G I +      L    D  L     P  +                    
Sbjct: 1  KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL 58

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 1/63 (1%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQW 59
          M  D++    I G G+                 + A+         +            +
Sbjct: 28 MPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY 87

Query: 60 KHN 62
           ++
Sbjct: 88 DYS 90

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 21/174 (12%), Positives = 48/174 (27%), Gaps = 13/174 (7%)

Query: 7   IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           I+ GI G  G  G  + R+     + ++  ++    +   +  +F           N + 
Sbjct: 2   IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPS------TLENSIL 55

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            + +   +     V              +      +   G     D    + +       
Sbjct: 56  SEFDPEKVSKNCDVLFTALPAGASYDLVRELKGVKIIDLGADFRFDDPGVYRE----WYG 111

Query: 126 ISAPSKDAPMFVVGVNE--KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVE 177
                 +    V G+ E  +E      +V N            + ++  FG+ E
Sbjct: 112 KELSGYENIKRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDE 165

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 237

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVAL-----QRDDVELVAVNDP-------FISTDYMTY 48
          +   + I++G  G       VA+             ++VA+ +P        I    + +
Sbjct: 11 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKH 70

Query: 49 MFKYDSVHGQWKHN 62
             +DS+    ++ 
Sbjct: 71 ATGFDSLESFAQYK 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d3cmco2	163	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1u8fo2	164	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1k3ta2	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1rm4a2	163	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1obfo2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2g82a2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.97
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.96
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.96
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.93
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.92
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	99.92
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	99.91
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	99.91
d1cf2o2	165	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.81
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	99.77
d1t4ba2	221	Aspartate beta-semialdehyde dehydrogenase {Escheri	99.77
d1mb4a2	222	Aspartate beta-semialdehyde dehydrogenase {Vibrio	99.77
d1b7go2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.76
d2hjsa2	190	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	99.75
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	99.75
d2gz1a2	202	Aspartate beta-semialdehyde dehydrogenase {Strepto	99.7
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	99.62
d2czca1	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.55
d2g17a2	155	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.49
d2cvoa2	165	Putative semialdehyde dehydrogenase {Rice (Oryza s	99.37
d1vkna2	163	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.32
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.0
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.58
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.58
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.53
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.51
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	98.44
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.43
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.38
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	98.21
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	98.09
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	97.91
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	97.64
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.63
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.46
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.38
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.06
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.04
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.96
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	96.86
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.86
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.78
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.58
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.49
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.47
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.43
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.43
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.39
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.39
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.3
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.29
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.24
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.15
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.13
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.05
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.96
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.83
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.75
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	95.71
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.71
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.65
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.57
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.53
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.35
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.29
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.22
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.16
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.12
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.11
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.09
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.08
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.76
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.73
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.55
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.5
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.31
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.02
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	93.96
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.58
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.53
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.51
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.51
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.45
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.4
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	93.29
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.23
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.82
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.78
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.74
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.73
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.58
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.36
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.21
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.82
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.64
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.53
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.34
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.26
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.53
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.5
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	90.18
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	90.17
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	89.63
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.41
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	89.24
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	89.12
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.97
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	88.94
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	88.64
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	88.51
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.52
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.47
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	87.42
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	87.28
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.19
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.95
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.84
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.75
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	86.53
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.5
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	86.23
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.0
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	85.83
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	85.55
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.48
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	85.44
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	85.39
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.36
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.19
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.13
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	85.09
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.74
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	84.71
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	84.68
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.66
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	84.25
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	84.15
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	83.93
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.88
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	83.68
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.51
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	83.12
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	82.93
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	82.91
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	82.84
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	82.76
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	82.5
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.67
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	81.24
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	81.2
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.99
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	80.89
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	80.74
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	80.64
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	80.54
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	80.45
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	80.12
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	80.04

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-43  Score=289.17  Aligned_cols=162  Identities=47%  Similarity=0.803  Sum_probs=153.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      +|||||||||||||.++|++.++|++++++||++ .+.++++|+|+|||+||+|+ +.+..+++ .|.+||+.|++++..
T Consensus         1 tikigINGFGRIGR~v~R~~~~~~~i~ivaINd~-~~~~~~ayLl~yDSvhG~~~-~~v~~~~~-~l~ing~~I~i~~~~   77 (166)
T d1gado1           1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER   77 (166)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC-CCHHHHhhhheecCCCCCcC-CeEEEeCC-EEEECCEEEEEEeCC
Confidence            4799999999999999999999999999999997 78999999999999999999 88887666 699999999999999


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhHh
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~  164 (296)
                      +|++++|.+.++|+|+||||.+.+++.++.|+++|+|+|++|+|+.| +|++|||+|++.|+ .+++||++||+|+|++|
T Consensus        78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d~~~~iV~GvN~~~~~-~~~iiS~aSCTTnclaP  156 (166)
T d1gado1          78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASNETGYSNK  156 (166)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCC-SCSEEECCCTTHHHHHH
T ss_pred             ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccccccCCEEEeCccccccC-CCCEEEeccHHHhHHHH
Confidence            99999999899999999999999999999999999999999999887 99999999999998 57899999999999999


Q ss_pred             HHHHHHh
Q 022491          165 LAKVIHD  171 (296)
Q Consensus       165 ~l~~L~~  171 (296)
                      +++.|..
T Consensus       157 v~kvl~~  163 (166)
T d1gado1         157 VLDLIAH  163 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=100.00  E-value=6.1e-44  Score=294.32  Aligned_cols=167  Identities=56%  Similarity=0.909  Sum_probs=157.6

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~   87 (296)
                      ||||||||||||.++|++.+++ +++++||++..+.++++|+|+|||+||+|+ +.+...++ .|.+||+.|++++..+|
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~-~~ivaINd~~~~~~~~~yLlkyDS~hG~~~-~~i~~~~~-~l~ing~~I~~~~~~~p   78 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAEDG-ALVVDGKKITVFNEMKP   78 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHCCTTTCCCS-SCEEEETT-EEEETTEEEEEECCSSG
T ss_pred             eEEEECCcHHHHHHHHHHHhCC-CcEEEECCCCcCHHHHHHHHhcccccCCcC-CeEEEeCC-EEEECCEEEEEEecCCh
Confidence            7999999999999999999875 899999998678899999999999999999 88877666 69999999999999999


Q ss_pred             CCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHhHHH
Q 022491           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK  167 (296)
Q Consensus        88 ~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~l~  167 (296)
                      ++++|...++|+|+||||.+.+.+.+..|+++|+|+|++++|+.|.|++|||+|++.|++..++||++||+|+|++|+++
T Consensus        79 ~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~iV~GVN~~~~~~~~~IIS~aSCTtn~laP~~k  158 (169)
T d1dssg1          79 ENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVID  158 (169)
T ss_dssp             GGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSSCBCCTTTSGGGCCTTCCEEECCCTTHHHHHHHHH
T ss_pred             HHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccccceeeecccccccCCCCCEEEChhHHHHHHHHHHH
Confidence            99999988999999999999999999999999999999999998899999999999998778999999999999999999


Q ss_pred             HHHhhcCeeE
Q 022491          168 VIHDKFGIVE  177 (296)
Q Consensus       168 ~L~~~~gi~~  177 (296)
                      .|++.|||++
T Consensus       159 ~l~~~fgIe~  168 (169)
T d1dssg1         159 LIKHMQKVDS  168 (169)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHhcCccc
Confidence            9999999874

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=100.00  E-value=3e-43  Score=290.67  Aligned_cols=167  Identities=44%  Similarity=0.723  Sum_probs=156.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      +||||||||||||.++|++.++|++++++||++ .+.++++|+|+|||+||+|. ..++..++ .|.++|+.+.+++..+
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd~-~d~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~i~~~~~   78 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL-TDANTLAHLLKYDSVHGRLD-AEVSVNGN-NLVVNGKEIIVKAERD   78 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECCSS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC-CCHHHHhhhhcccccCCccc-ccccccCC-CEEeCCcceeeEecCC
Confidence            799999999999999999999999999999998 68999999999999999999 88887666 6999999999999999


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCC-CCCeEEcCCcchhhhHh
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAP  164 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~-~~~iIs~p~C~~tal~~  164 (296)
                      |++++|...++|+|+||||.+.+++.++.|+++|+|+|++|+|+.| ++++|||+|++.|++ .+++|||+||||+|++|
T Consensus        79 p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d~~~t~V~GvN~~~~~~~~~~iIS~aSCTtn~laP  158 (171)
T d3cmco1          79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHR  158 (171)
T ss_dssp             GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCTTHHHHHH
T ss_pred             HHHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecccccccceeeeccchheecCCCCeEEEehhHHHhHHHH
Confidence            9999999999999999999999999999999999999999999876 669999999999985 57999999999999999


Q ss_pred             HHHHHHhhcCeeEE
Q 022491          165 LAKVIHDKFGIVEG  178 (296)
Q Consensus       165 ~l~~L~~~~gi~~~  178 (296)
                      +++.|+  |||+++
T Consensus       159 v~kvl~--fgi~~G  170 (171)
T d3cmco1         159 VVDLAA--YIASKG  170 (171)
T ss_dssp             HHHHHH--HHHHTC
T ss_pred             HHHHHH--hhHhhC
Confidence            999994  998754

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=100.00  E-value=2.5e-42  Score=284.62  Aligned_cols=164  Identities=52%  Similarity=0.938  Sum_probs=155.0

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |+||||||||||||.++|++.+++++++++||++..++++++|+|+|||+||+|+ +.++..++ .|.++++.|+++...
T Consensus         1 kikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~~~~I~~~~~~   78 (169)
T d1u8fo1           1 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH-GTVKAENG-KLVINGNPITIFQER   78 (169)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CcEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcC-CeEEEECC-EEEECCEEEEEEECC
Confidence            5899999999999999999999999999999998678899999999999999999 88887665 699999999999999


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccCCCCCeEEcCCcchhhhHhH
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPL  165 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~  165 (296)
                      +|++++|.+.++|+|+||||.|.+++.+..|+++|+|+|++|+|+.|.|++|||+|++.|++..++||++||||+|++|+
T Consensus        79 ~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~d~~tiV~GvN~~~~~~~~~iIS~aSCTtn~~aPv  158 (169)
T d1u8fo1          79 DPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRV  158 (169)
T ss_dssp             SGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCTTCSEEECCCTTHHHHHHH
T ss_pred             ChhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccccccceEEeecCHHHcCCCCCEEECccHHHHHHHHH
Confidence            99999999899999999999999999999999999999999999988899999999999987779999999999999999


Q ss_pred             HHHHHh
Q 022491          166 AKVIHD  171 (296)
Q Consensus       166 l~~L~~  171 (296)
                      ++.|..
T Consensus       159 ~~vl~~  164 (169)
T d1u8fo1         159 VDLMAH  164 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=4.5e-41  Score=278.29  Aligned_cols=166  Identities=40%  Similarity=0.684  Sum_probs=150.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            7 IKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |||||||||||||.++|++.++  +++++|+||++ .+.++++|+|+|||+||+|. +.+...++..+.+||+.|++++.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~-~~~~~~ayLlkyDSvhG~~~-~~i~~~~~~~~~ing~~I~~~~~   78 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT-GGVKQASHLLKYDSILGTFD-ADVKTAGDSAISVDGKVIKVVSD   78 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT-TCHHHHHHHHHCCTTTCSCS-SCEEECTTSEEEETTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC-CCHHHHHHHHhcCccccccc-ceeEecCCcceEECCEEEEEecC
Confidence            6999999999999999998764  45999999998 68999999999999999998 77766554446789999999999


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCCCCCeEEcCCcchhh--
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNC--  161 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~~~~iIs~p~C~~ta--  161 (296)
                      ++|.+++|.+.++|+|+||||.|.+++.+.+|+++|+|+|++|+|+. ++|++|||+|++.|++..++|||+||||+|  
T Consensus        79 ~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k~~~~tiV~GVN~~~~~~~~~iIS~aSCTtn~~~  158 (172)
T d1rm4a1          79 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQ  158 (172)
T ss_dssp             SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCBSSCCBCCTTTTGGGCCTTCSEEECCCTTHHHHH
T ss_pred             CChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeecccccceeeEEeecchhhcCCCCCEEEcccchhccHh
Confidence            99999999988999999999999999999999999999999999986 489999999999998778999999999554  


Q ss_pred             -hHhHHHHHHhhcC
Q 022491          162 -LAPLAKVIHDKFG  174 (296)
Q Consensus       162 -l~~~l~~L~~~~g  174 (296)
                       ++|+++.|++.|.
T Consensus       159 ~l~pv~~vi~~~f~  172 (172)
T d1rm4a1         159 RVVDLADIVANKWQ  172 (172)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HhHHHHHHHHhhcC
Confidence             8999999998773

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=3.3e-41  Score=277.76  Aligned_cols=163  Identities=52%  Similarity=0.859  Sum_probs=153.3

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~   87 (296)
                      ||||||||||||.++|++.++|++++++||++..++++++|+|+|||+||+|+ +.+...++ .|.++++.|++++..+|
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHADG-FLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEESSCEEEEECCSSG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccce-eeeccCCc-eEEecCcEEEEEeCCCh
Confidence            89999999999999999999999999999998678999999999999999999 88877666 69999999999999999


Q ss_pred             CCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhHhHH
Q 022491           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA  166 (296)
Q Consensus        88 ~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~~l  166 (296)
                      ++++|...++|+|+||||.+.+++.++.|+++|+|+|++|+|+.+ +|++|||+|++.|++..++|||+||+   ++|++
T Consensus        80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~tiV~GVN~~~~~~~~~IIS~AS~~---~ap~~  156 (166)
T d2b4ro1          80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASNE---WGYSN  156 (166)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTCCEEECCCTT---HHHHH
T ss_pred             HHccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecccccccceeeeecchhhcCCCCCEEEChhHH---HHHHH
Confidence            999999899999999999999999999999999999999999874 99999999999998777899999985   78999


Q ss_pred             HHHHhhcCe
Q 022491          167 KVIHDKFGI  175 (296)
Q Consensus       167 ~~L~~~~gi  175 (296)
                      +.|+++|||
T Consensus       157 kvl~~~fgI  165 (166)
T d2b4ro1         157 RVLDLAVHI  165 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHcCc
Confidence            999999987

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=3e-41  Score=283.83  Aligned_cols=172  Identities=42%  Similarity=0.724  Sum_probs=152.0

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC----CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeC-------CceeE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKD-------EKTLL   73 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~----p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~-------~~~l~   73 (296)
                      |+|||||||||||||.++|.+.++    +++++++|+++..++++++|+|+|||+||+|. +.++...       +..+.
T Consensus         1 M~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~-~~v~~~~~~~~~~~~~~~i   79 (190)
T d1k3ta1           1 MPIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK-YEVTTTKSSPSVAKDDTLV   79 (190)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECS-SCEEEECSSTTCSSCCEEE
T ss_pred             CCeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCC-ceEEEccCccccccccceE
Confidence            568999999999999999988754    67999999998778999999999999999998 7666532       22456


Q ss_pred             ECCEEEE-EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCC-CCC
Q 022491           74 FGEKPVA-VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELD  150 (296)
Q Consensus        74 ~~~~~i~-~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~-~~~  150 (296)
                      ++|+.+. ++..++|++++|...++|+|+||||.|.+++.++.|+++|+|+|++|+|+. ++|++|||+|++.|++ +++
T Consensus        80 ~~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~~tiV~GVN~~~y~~~~~~  159 (190)
T d1k3ta1          80 VNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHH  159 (190)
T ss_dssp             ETTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCTTTCS
T ss_pred             EcCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCCcccCCeEEeccCHhhcCCccCc
Confidence            7776654 455778999999989999999999999999999999999999999999876 4899999999999985 578


Q ss_pred             eEEcCCcchhhhHhHHHHHHhhcCeeE
Q 022491          151 IVSNASCTTNCLAPLAKVIHDKFGIVE  177 (296)
Q Consensus       151 iIs~p~C~~tal~~~l~~L~~~~gi~~  177 (296)
                      |||++||||+|++|+++.|+..|++++
T Consensus       160 IIS~ASCTtn~lapv~kvi~~~f~~~~  186 (190)
T d1k3ta1         160 VVSNADNEWGYSHRVVDLVRHMASKDR  186 (190)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEchhHhhhHHHHHHHHHHHHhcccc
Confidence            999999999999999999999998864

>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=100.00  E-value=4.2e-41  Score=273.53  Aligned_cols=139  Identities=61%  Similarity=0.937  Sum_probs=137.1

Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEE
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  236 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~  236 (296)
                      |+|+|++|+++.|+++|||++++|||+|++|++|+++|.++ +++|+||++++|++|..+|+++++.+++|+|+|++.+.
T Consensus         1 CTTNclaP~~kvl~~~fgI~~g~mTTvHa~T~~Q~l~D~~~-~d~Rr~Raa~~niIPtsTgAakav~~vlP~L~gkl~g~   79 (163)
T d3cmco2           1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGM   79 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTTTEEEE
T ss_pred             ChhHHHHHHHHHHHhhcCeeEEEEEeeccccCcccCCCCCC-cchhccchHhhCCCCccccHHHHHHHhhHHhCCCcceE
Confidence            99999999999999999999999999999999999999998 69999999999999999999999999999999999999


Q ss_pred             EEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       237 ~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++|||+..|++++++++++++++.|||+++|++++++++|||++|+++|+||+||+|+||
T Consensus        80 a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~k~as~~~lkgil~~t~~plVSsDf~g~~~  139 (163)
T d3cmco2          80 AMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTV  139 (163)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCS
T ss_pred             EEecCCCcceeEEEEEEecCcCCHHHHHHHHHHHhcCCccCcceeeecccchhhccCCCc
Confidence            999999999999999999999999999999999999999999999999999999999986

>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=100.00  E-value=3.5e-41  Score=273.60  Aligned_cols=140  Identities=77%  Similarity=1.150  Sum_probs=137.7

Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEE
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  236 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~  236 (296)
                      |+|+|++|+++.|++.|||++++|||+|+|+++|+++|+++++++|++|++++|+||..+|+++++.+++|||+|++.+.
T Consensus         1 CTTNclaP~~kvl~~~fgI~~g~mTTiHayT~~Q~l~D~~~~~~~Rr~Raa~~niIPttTgAakAv~~vlP~L~gkl~g~   80 (164)
T d1u8fo2           1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGM   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEE
T ss_pred             ChhHHHHHHHHHHHhhcCeeEEEEEeeecccCccccccccccCccccCCCCcCcceeccccHHHHHHHhChhhcCCccce
Confidence            99999999999999999999999999999999999999988778899999999999999999999999999999999999


Q ss_pred             EEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       237 ~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++|||+..|++++++++++++++.|||+++|++++++++|||++|+++|+||+||+|+||
T Consensus        81 a~RVPt~~vS~vDlt~~l~k~~t~eevn~~l~~aa~~~lk~Il~~~~eplVSsDf~g~~~  140 (164)
T d1u8fo2          81 AFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTH  140 (164)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             EEecCCCCcceeeEEEEEcCcCCHHHHHHHHHHHhcCCccCcccccccceeecccCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999997

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=1.4e-40  Score=274.74  Aligned_cols=162  Identities=45%  Similarity=0.744  Sum_probs=150.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |||||||||||||.++|+|.+. ++++++||++ .+.+.++|+|+|||+|++|. +.+...++ .|.++++.|++++..+
T Consensus         1 ikigINGfGRIGR~~~R~l~~~-~i~iv~INd~-~~~~~~ayLl~yDS~hG~~~-~~v~~~~~-~l~i~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSR-GVEVALINDL-TDNKTLAHLLKYDSIYHRFP-GEVAYDDQ-YLYVDGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcC-CCEEEEECCC-cchhhhhheeecccccCccc-cccccccc-eeEecceeEEEEecCC
Confidence            6899999999999999998764 6999999998 78999999999999999999 77777655 6999999999999999


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCC-CCCeEEcCCcc---hhh
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCT---TNC  161 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~-~~~iIs~p~C~---~ta  161 (296)
                      |++++|.+.++|+|+||||.+.+++.++.|+++|+|+|++|+|+.+ ++++|||+|++.|++ .+++|||+|||   |+|
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~~iV~GvN~~~y~~~~~~IIS~ASCT~~~tN~  156 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANR  156 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCCEEECCCTTHHHHHH
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhccccceeeeccccccccceeEeeccHHHccCCCCcEEEeccccCccHHH
Confidence            9999999999999999999999999999999999999999999875 789999999999985 57999999999   899


Q ss_pred             hHhHHHHHHhh
Q 022491          162 LAPLAKVIHDK  172 (296)
Q Consensus       162 l~~~l~~L~~~  172 (296)
                      ++|+++.|+++
T Consensus       157 laPv~k~i~~k  167 (168)
T d2g82a1         157 VADLVELVLRK  167 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999999875

>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.4e-40  Score=273.31  Aligned_cols=141  Identities=65%  Similarity=1.038  Sum_probs=137.7

Q ss_pred             CcchhhhHhHHHHH-HhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCcee
Q 022491          156 SCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLT  234 (296)
Q Consensus       156 ~C~~tal~~~l~~L-~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~  234 (296)
                      ||+|+|++|+++.| ++.|||++++|||+|+++++|+.+|.++.+|+|+||++++||||..+|+++++.+++|||+|++.
T Consensus         1 SCTTNclaP~~kvL~~~~fgI~~g~mtTvHa~T~~Q~~lD~~~~~d~Rr~Raa~~nIIPtsTgAakav~~vlP~L~gKi~   80 (169)
T d1k3ta2           1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLT   80 (169)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCCSSCTGGGSBGGGCCEEEECSHHHHHHHHSGGGTTTEE
T ss_pred             CcHHHHHHHHHHHhhccccceeEEEEEEeccccCCCcccccccCCCCcCccccccccccccchHHHHHHHhccccCCCcc
Confidence            79999999999997 78899999999999999999999998877899999999999999999999999999999999999


Q ss_pred             EEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       235 ~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      +.++|||+.+|++++++++++++++.|||+++|++++++++|||++|+++|+||+||+|+||
T Consensus        81 g~a~RVPt~nvS~vDLt~~l~k~~t~eein~~~~~as~~~~kgil~~t~eplVS~Df~g~~~  142 (169)
T d1k3ta2          81 GMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNR  142 (169)
T ss_dssp             EEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             ceeecccccccceeeeeeeccccchhhHHHHHHHHHhhCCCCCceeEecCcEEeeccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999996

>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.3e-40  Score=269.77  Aligned_cols=139  Identities=53%  Similarity=0.826  Sum_probs=137.0

Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEE
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  236 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~  236 (296)
                      |+|+|++|+++.|+++|||++++|||+|+++++|+++|.++ +++|++|++.+|+||..+|+++++.+++|||+|++.+.
T Consensus         1 CTTN~laP~~kvl~~~fgI~~g~mtTvHa~T~~Q~l~D~~~-~d~rr~Raa~~niIPt~Tga~kai~~vlP~L~gki~g~   79 (163)
T d1rm4a2           1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGI   79 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCTTTCCEEECCCHHHHHHHHCGGGTTTEEEE
T ss_pred             ChhHhHHHHHHHHHHhCCeeEEEEEEeccccCCcCcccCCC-CcccccchhhcccCcCcccHHHHHHHhChhhcCCcceE
Confidence            99999999999999999999999999999999999999987 79999999999999999999999999999999999999


Q ss_pred             EEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       237 ~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++|||+.+|++++++++++++++.|||+++|++++++++|||++|+++|+||+||+|+||
T Consensus        80 a~RVPt~nvS~vDl~~~l~k~~t~eein~~~~~as~~~~~~il~~~~eplVSsDf~g~~~  139 (163)
T d1rm4a2          80 ALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDV  139 (163)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCS
T ss_pred             EEecCCCCceeEEEEEeccCCCCHHHHHHHHHHHhhCcccCccccccCccccccccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999986

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.1e-40  Score=271.12  Aligned_cols=163  Identities=39%  Similarity=0.705  Sum_probs=150.8

Q ss_pred             EEEEEecCHHHHHHHHHHHc--CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            8 KIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~--~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ||||||||||||.++|.+.+  +|++++|+||+. .+.++++|+|+|||+||+|+ +.++.+++ .|.+||+.|++++..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~-~~~e~~ayLlkyDS~hG~~~-~~v~~~~~-~l~ing~~I~~~~~~   78 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL-TDTKTLAHLLKYDSVHKKFP-GKVEYTEN-SLIVDGKEIKVFAEP   78 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS-SCHHHHHHHHHCCTTTCCCS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccC-ccHHHHHHHHhccccccccC-ceEEEECC-EEEECCEEEEEEeCC
Confidence            79999999999999999875  678999999998 78999999999999999999 88877655 699999999999999


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC-CCeEEcccChhccCCCCCeEEcCCcchhhhHh
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d-~~~~v~gvn~~~l~~~~~iIs~p~C~~tal~~  164 (296)
                      +|++++|.+.++|+|+||||.|.+++.+.+|+++|+|+|++|+|+.+ ++++|||+|+++|++..++||+.||++++++|
T Consensus        79 ~p~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd~~~tiV~GvN~~~~~~~~~iiS~aScttn~~a~  158 (169)
T d1hdgo1          79 DPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNR  158 (169)
T ss_dssp             SGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTCCEEECCCTTHHHHHH
T ss_pred             ChhhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecccCCCcceeEEecchhhcCCcCcEEEchhHhhhHHHH
Confidence            99999999889999999999999999999999999999999999876 77899999999999778999999999999999


Q ss_pred             HHHHHHhhc
Q 022491          165 LAKVIHDKF  173 (296)
Q Consensus       165 ~l~~L~~~~  173 (296)
                      ++..|+..+
T Consensus       159 v~~vi~~l~  167 (169)
T d1hdgo1         159 VVDTLELLL  167 (169)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHHHh
Confidence            998776543

>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=100.00  E-value=3.5e-40  Score=269.21  Aligned_cols=140  Identities=51%  Similarity=0.825  Sum_probs=137.6

Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeE
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTG  235 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~  235 (296)
                      ||+|||++|+++.|+++|||++++|||+|+++++|+++|.++ +++|++|++.+|+||..+|+++++.+++|||+|++.+
T Consensus         1 SCTTN~laP~~kvl~~~fgI~~g~mtTvHa~t~~Q~l~D~~~-~d~r~~Raa~~niIP~sTgAakav~~viP~L~gki~g   79 (162)
T d1obfo2           1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNG   79 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCC-SSTTTTSCTTTCCEEEECCHHHHHHHHCGGGTTSEEE
T ss_pred             CcHHHHHHHHHHHHHhhcCeeEEEEEEeeccccccccccccc-ccccccccccceeeeecCCchhhHhHhChhhCCCCCc
Confidence            799999999999999999999999999999999999999987 6999999999999999999999999999999999999


Q ss_pred             EEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          236 MSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       236 ~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      .++|||+..+++++++++++++++.|||+++|++++++++|||++|+++|+||+||+|+||
T Consensus        80 ~a~RVPt~~vS~vDLt~~l~k~~t~eein~~l~~aa~~~~~~il~~t~eplVSsDf~g~~~  140 (162)
T d1obfo2          80 YAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPA  140 (162)
T ss_dssp             EEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             eEEeccccCcceeeEEEEecCCCCHHHHHHHHHHHhhCcccCcccccCCccCCccccCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999996

>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=6e-40  Score=267.31  Aligned_cols=139  Identities=53%  Similarity=0.815  Sum_probs=137.0

Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCChhhHHHHhccccCCceeEE
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  236 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~~~~~~~~~pel~~~v~~~  236 (296)
                      |+|+|++|+++.|+++|||+++.|||+|+++++|+++|.++ +++|++|++.+||||..+|+++++.+++|||+|++.+.
T Consensus         1 CTTNclaP~~kil~~~fgI~~g~~tTiH~~t~~Q~l~D~~~-~d~rr~Rsa~~niIPt~Tgaakai~~vlP~L~gki~g~   79 (162)
T d2g82a2           1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGM   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGGGCCEEECCCHHHHHHHHCGGGTTSEEEE
T ss_pred             ChhHhHHHHHHHHHhhcCeeEEEEEeeccccCccccCCCCC-CCccccchhhcccCcccCccchhhchhhHhhCCCceeE
Confidence            99999999999999999999999999999999999999998 69999999999999999999999999999999999999


Q ss_pred             EEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCcCCCcccccCCceeeecCCCCCC
Q 022491          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSR  296 (296)
Q Consensus       237 ~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~vs~d~~~~~~  296 (296)
                      ++|||+.+|++++++++++++++.|||+++|+++++++++||++|+++|+||+||+|+||
T Consensus        80 a~RVPt~nvS~vDl~~~l~k~~s~eeIn~~lk~aa~~~~~~il~~~~eplVS~Df~g~~~  139 (162)
T d2g82a2          80 ALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPH  139 (162)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCC
T ss_pred             EEeecccccceEEEEEEecCcCCHHHHHHHHHHHccCCCcCeeeEecccceehhcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999986

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=100.00  E-value=4.9e-40  Score=272.50  Aligned_cols=167  Identities=35%  Similarity=0.634  Sum_probs=153.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHc---CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~---~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      +|||||||||||||.++|++.+   ++++++++||++ .+.++++|+|+|||+|++|+ +.+...++ .+.+||+.++++
T Consensus         1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~-~~~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~g~~i~i~   77 (173)
T d1obfo1           1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL-GDPKTNAHLTRYDTAHGKFP-GTVSVNGS-YMVVNGDKIRVD   77 (173)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEE
T ss_pred             CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC-CChHHHHHhhcccccCCCcC-ceEEeccc-eEEECCEEEEEE
Confidence            4799999999999999999875   578999999998 78999999999999999999 88777666 589999999999


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCCCCCeEEcCCcchh
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTN  160 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~~~~iIs~p~C~~t  160 (296)
                      +..+|++++|...++|+|+||||.+.+++.+.+|+++|+|+|+||+|+.+  +|++|||+|++.|++..++|||++    
T Consensus        78 ~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~d~tiV~GVN~~~~~~~~~IISnAs----  153 (173)
T d1obfo1          78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD----  153 (173)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCC----
T ss_pred             ecCCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCCCCCcceEEEecchhhcCCCCCEEECCc----
Confidence            99999999999999999999999999999999999999999999999874  799999999999987789999986    


Q ss_pred             hhHhHHHHHHhhcCeeEEEEEEEeecCCc
Q 022491          161 CLAPLAKVIHDKFGIVEGLMTTVHSITAT  189 (296)
Q Consensus       161 al~~~l~~L~~~~gi~~~~~~~v~a~sg~  189 (296)
                                +.|||++++|||+|++|.+
T Consensus       154 ----------~~fgI~~g~mtTih~~tsa  172 (173)
T d1obfo1         154 ----------NEWGFSNRMLDTTVALMSA  172 (173)
T ss_dssp             ----------TTHHHHHHHHHHHHHHHHC
T ss_pred             ----------cccCceeeEEEeeheeeec
Confidence                      8899999999999998753

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=5.5e-33  Score=231.44  Aligned_cols=159  Identities=16%  Similarity=0.241  Sum_probs=121.2

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccccc-ccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~-s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |+||||||||||||.++|++.++|++|+|+|++...... ..++++++ +.|..+. ......+. .+.+          
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~i~v----------   67 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE-AFIAHRRGIRIYVPQQ-SIKKFEES-GIPV----------   67 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH-HHHHHHTTCCEECCGG-GHHHHHTT-TCCC----------
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHH-HHHhcccCcceeccCc-cceecccc-ceec----------
Confidence            499999999999999999999999999999999844433 33344444 4455444 32211111 1211          


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC---CCeEEcccChhccC-CC-CCeEEcCCcch
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD---APMFVVGVNEKEYK-PE-LDIVSNASCTT  159 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d---~~~~v~gvn~~~l~-~~-~~iIs~p~C~~  159 (296)
                        ...++|...++|+|+||||.|.+++.++.|+++|+ |+|+++++.+   +.++|||+|++++. ++ .++|||++|+|
T Consensus        68 --~g~~~~~~~~vDiViecTG~f~~~e~a~~hl~~G~-KvIi~~~~~~~~~~~t~V~GvN~~~~~~~~~~~vVSnAsctt  144 (178)
T d1b7go1          68 --AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQR-NAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVP  144 (178)
T ss_dssp             --CCCHHHHHHHCSEEEECCSTTHHHHHHHHHHHTTC-EEEECTTSCGGGSSCEECHHHHHHHHTTCSEEEECCTTTHHH
T ss_pred             --CCchhhhhhcCCEEEECCCCcCCHHHHHHHHHcCC-EEEEECCCCccccCCeEEeCcchHHhcCCCCCEEEeCCcccc
Confidence              12445656789999999999999999999999995 6788877653   45899999988853 33 47999999999


Q ss_pred             hhhHhH------------HHHHHhhcCeeEEEE
Q 022491          160 NCLAPL------------AKVIHDKFGIVEGLM  180 (296)
Q Consensus       160 tal~~~------------l~~L~~~~gi~~~~~  180 (296)
                      +|++|+            ++.|++.|||+++.|
T Consensus       145 n~lap~~~~~~~~~~~~~~kv~~~~~gi~~g~~  177 (178)
T d1b7go1         145 ENIDAIRASMKLMSAEDSMRITNESLGILKGYL  177 (178)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHTTCCCSBC
T ss_pred             cccHHHHHHHHhhccccceeeeccccceeeeee
Confidence            999999            999999999987643

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=99.96  E-value=3.1e-32  Score=225.58  Aligned_cols=157  Identities=15%  Similarity=0.154  Sum_probs=114.0

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccccc-ccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~-s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |+||||||||||||.++|++.++|++++++||+...+ ....++++++ +.+..+.+........ .+.+++        
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~v~g--------   70 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPD-FEARMALKKGYDLYVAIPERVKLFEKA-GIEVAG--------   70 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHT-TCCCCE--------
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcH-HHHHHHHhcCCceEecccccceeeccc-CcccCC--------
Confidence            3899999999999999999999999999999997333 3344555554 2222222011000000 121111        


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-C--CCeEEcccChhccCC-CCCeEEcCCcchh
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D--APMFVVGVNEKEYKP-ELDIVSNASCTTN  160 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-d--~~~~v~gvn~~~l~~-~~~iIs~p~C~~t  160 (296)
                          ++.|...++|+|+||||.|.+.+.++.|+++|+| +|+.+++. +  ..++|||+|++++.+ ++.+|||+|||||
T Consensus        71 ----~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~K-~vi~~~~~~~~~~~~~v~GvN~~~~~~~~~~ivS~aSCTTN  145 (171)
T d1cf2o1          71 ----TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIK-AIFQGGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVD  145 (171)
T ss_dssp             ----EHHHHHHTCSEEEECCSTTHHHHHHHHHHHTTCE-EEECTTSCHHHHSCEECHHHHHHHHTTCSEEEECTHHHHHH
T ss_pred             ----ChhHhhcCCCEEEEccCCCCCHHHHHHHHHcCCC-EEEECCCCccCCCceeEeccChhhhcCCCCcEEEECCchHH
Confidence                1223346899999999999999999999999986 55554443 3  457999999887653 5668999999999


Q ss_pred             hhHhHHHHHHhhcCeeE
Q 022491          161 CLAPLAKVIHDKFGIVE  177 (296)
Q Consensus       161 al~~~l~~L~~~~gi~~  177 (296)
                      ||+|++++|+++||+.+
T Consensus       146 clapv~kvl~~~fGiv~  162 (171)
T d1cf2o1         146 AVRAILEMEEDKYKSIN  162 (171)
T ss_dssp             HHHHHTTSCSCHHHHHH
T ss_pred             hHHHHHHHHHHHcCchh
Confidence            99999999999999754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=2.8e-31  Score=220.08  Aligned_cols=161  Identities=16%  Similarity=0.148  Sum_probs=116.5

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhccccc-ccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~-s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |++||||||||||||.++|++.++|++|+|+||+. ......+++++++ +.+..+. +....-....+.          
T Consensus         1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~-~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~----------   68 (172)
T d2czca2           1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKT-KPDFEAYRAKELGIPVYAASE-EFIPRFEKEGFE----------   68 (172)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEES-SCSHHHHHHHHTTCCEEESSG-GGHHHHHHHTCC----------
T ss_pred             CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecC-CChHHHHHhhhcCceeecccc-cceeeecccCcc----------
Confidence            67999999999999999999999999999999997 3333344555443 2221111 100000000010          


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC--CCeEEcccChhccCC-CCCeEEcCCcchh
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTN  160 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d--~~~~v~gvn~~~l~~-~~~iIs~p~C~~t  160 (296)
                        ...+++|...++|+|+||||.|.+++.++.|+++|+|+|+++++..+  ++++|||+|++++.. +...|++.||||+
T Consensus        69 --~~~~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~~~~~~t~v~GvNh~~~~~~~~~~v~scsctTn  146 (172)
T d2czca2          69 --VAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENID  146 (172)
T ss_dssp             --CSCBHHHHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGGGSSEEECHHHHGGGGTTCSEEEECTHHHHHH
T ss_pred             --ccchhhhhhccCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCcccCCCeeEecccchhhcCCCceEEEecCchHH
Confidence              11234454468999999999999999999999999998888877664  578999999887652 2234555566999


Q ss_pred             hhHhHHHHHHhhcCeeEEE
Q 022491          161 CLAPLAKVIHDKFGIVEGL  179 (296)
Q Consensus       161 al~~~l~~L~~~~gi~~~~  179 (296)
                      ||+|+++.|++.|||+++.
T Consensus       147 ~lap~~kvld~~~gIe~~~  165 (172)
T d2czca2         147 AIRAMFELADKWDSIKKTN  165 (172)
T ss_dssp             HHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCeeEee
Confidence            9999999999999998754

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.1e-26  Score=192.51  Aligned_cols=140  Identities=16%  Similarity=0.218  Sum_probs=106.3

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      |+||||+|+ ||+|+|++|+|.+||++|++.+.+. ++.+.     .+++.|+++. ..        .        ....
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~-~~aG~-----~i~~~~p~~~-~~--------~--------~~~~   57 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR-TYAGK-----KLEEIFPSTL-EN--------S--------ILSE   57 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS-TTTTS-----BHHHHCGGGC-CC--------C--------BCBC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeecc-ccCCC-----cccccCchhh-cc--------c--------cccc
Confidence            489999999 9999999999999999999999887 44432     2355565443 11        1        0111


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC---CC-----------------CeEEcccC---
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DA-----------------PMFVVGVN---  141 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~---d~-----------------~~~v~gvn---  141 (296)
                      .+++++   ..++|+||+|+|++.+++.+++.  +|+  .|||+|++   +.                 -.++||++   
T Consensus        58 ~~~~~~---~~~~dvvf~a~p~~~s~~~~~~~--~~~--~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~~~~YGlpE~~  130 (176)
T d1vkna1          58 FDPEKV---SKNCDVLFTALPAGASYDLVREL--KGV--KIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELH  130 (176)
T ss_dssp             CCHHHH---HHHCSEEEECCSTTHHHHHHTTC--CSC--EEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHH
T ss_pred             cCHhHh---ccccceEEEccccHHHHHHHHhh--ccc--eEEecCccccccchhhHHHhhccccccccccceeecCcHHh
Confidence            133333   24799999999999998887653  566  78999987   11                 13788885   


Q ss_pred             hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee
Q 022491          142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV  176 (296)
Q Consensus       142 ~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~  176 (296)
                      +++++ ++++|||||||+|+++++|+||++.+||.
T Consensus       131 r~~i~-~~~~IanPgC~~t~~~laL~PL~~~~gi~  164 (176)
T d1vkna1         131 REEIK-NAQVVGNPGLVKGASGQAVQNMNIMFGLD  164 (176)
T ss_dssp             HHHHT-TCSEEECCCTTTTTHHHHHHHHHHHTTCC
T ss_pred             HHHHh-cCCEEEccCcHHHHHHHHHhhHHHhcCCc
Confidence            67887 78999999999999999999999988863

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.92  E-value=8.8e-26  Score=188.32  Aligned_cols=141  Identities=15%  Similarity=0.147  Sum_probs=103.8

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCC--ChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFI--STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~--~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |+||||+|+ ||+|+||+|+|.+||++|+..+...+.  +.+   .  .+.+.++.+. +..      .+     .....
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aG---k--~~~~~~~~~~-~~~------~~-----~~~~~   63 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAG---K--LISDLHPQLK-GIV------DL-----PLQPM   63 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTT---C--BHHHHCGGGT-TTC------CC-----BEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccccc---c--cccccccccc-ccc------cc-----ccccc
Confidence            489999999 999999999999999999999976422  222   1  2345555544 210      01     01111


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCC---------------------CCeEEcccC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD---------------------APMFVVGVN  141 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d---------------------~~~~v~gvn  141 (296)
                           ++..+...++|+||+|+|+..+.+.++.+++.|+  +|||++++-                     ...+|||++
T Consensus        64 -----~~~~~~~~~~dvvf~alp~~~s~~~~~~~~~~~~--~vIDlSadfRl~~~~~~~~~y~~~~~~~~~~~~~vYglp  136 (179)
T d2g17a1          64 -----SDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGC--VVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLA  136 (179)
T ss_dssp             -----SCGGGTCTTCCEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTSSSCHHHHHHHHCSCCSCHHHHHHCEECCG
T ss_pred             -----hhhhhhhcccceeeccccchhHHHHhhhhhhcCc--eeecccccccccccccccccccccccccccccccccCch
Confidence                 1111224689999999999999999999999999  789998861                     124788885


Q ss_pred             ---hhccCCCCCeEEcCCcchhhhHhHHH-HHHh
Q 022491          142 ---EKEYKPELDIVSNASCTTNCLAPLAK-VIHD  171 (296)
Q Consensus       142 ---~~~l~~~~~iIs~p~C~~tal~~~l~-~L~~  171 (296)
                         +++++ ++++|||||||+|++.++|+ ||.+
T Consensus       137 E~~r~~i~-~~~~IAnPGCyaTa~~laL~~pl~~  169 (179)
T d2g17a1         137 EWNVDKLN-TANLIAVPGLLKGAAAQAVQCANIR  169 (179)
T ss_dssp             GGCHHHHT-TCSEEECCCTTTTTHHHHHHHHHHH
T ss_pred             hhhHHHHh-cCCEEEcCCchHHHHHHHHHhHHHH
Confidence               67787 78999999999999999997 5544

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.92  E-value=9.1e-27  Score=195.00  Aligned_cols=144  Identities=13%  Similarity=0.149  Sum_probs=103.4

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      .++||||+|+ ||+|+|++|+|.+||++|++.+.+. .+.+.     .+++.++.+. ..    +   +.       .+.
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~-~~aG~-----~~~~~~~~~~-~~----~---~~-------~~~   62 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTAD-RKAGE-----QFGSVFPHLI-TQ----D---LP-------NLV   62 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECS-TTTTS-----CHHHHCGGGT-TS----C---CC-------CCB
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEecc-ccCCC-----cccccccccc-cc----c---cc-------cch
Confidence            4699999999 9999999999999999999999876 44332     2344555433 10    0   10       011


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC---C-----------------CCeEEcccC--
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---D-----------------APMFVVGVN--  141 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~---d-----------------~~~~v~gvn--  141 (296)
                        ...+..  ..++|+||+|+|++.++++++.+.+.+.  ++++.++.   +                 .+.++||++  
T Consensus        63 --~~~~~~--~~~~Dvvf~alp~~~s~~~~~~l~~~~~--~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vyglpE~  136 (183)
T d2cvoa1          63 --AVKDAD--FSNVDAVFCCLPHGTTQEIIKGLPQELK--IVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGLTEV  136 (183)
T ss_dssp             --CGGGCC--GGGCSEEEECCSSSHHHHHHHTSCSSCE--EEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHH
T ss_pred             --hhhhhh--hcccceeeeccccchHHHHHHHHHhcCc--ccccchhhhccccchheeeccccccchhhhccccccCchH
Confidence              111122  3589999999999999999987666554  44433332   0                 235788875  


Q ss_pred             -hhccCCCCCeEEcCCcchhhhHhHHHHHHhhcCee
Q 022491          142 -EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV  176 (296)
Q Consensus       142 -~~~l~~~~~iIs~p~C~~tal~~~l~~L~~~~gi~  176 (296)
                       +++++ ++++|||||||+|++.++|+||+..+|+.
T Consensus       137 ~r~~i~-~a~~IANPgC~~t~~~laL~PL~~~~gli  171 (183)
T d2cvoa1         137 LRNEIR-NARLVANPGLVKGASGQAVQNLNLMMGLP  171 (183)
T ss_dssp             HHHHHH-HCSEEECCCTTTTTHHHHHHHHHHHHTSC
T ss_pred             HHHHHh-hCCEeeCCCcHHHHHHHhhhhHHHhcCCC
Confidence             67776 78999999999999999999998877764

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=7.8e-25  Score=176.12  Aligned_cols=132  Identities=15%  Similarity=0.169  Sum_probs=104.1

Q ss_pred             eEEEEEec-CHHHHHHHHHHH--cCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~--~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |||||+|+ ||+|+|++|+|.  +||.+++..+.+. .+.+.                         .+.+.+..+.+. 
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~-~~~Gk-------------------------~i~~~~~~~~~~-   55 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA-ESAGQ-------------------------RMGFAESSLRVG-   55 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT-TTTTC-------------------------EEEETTEEEECE-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec-ccCCc-------------------------ceeeccccchhc-
Confidence            79999999 999999999996  6899999998776 33321                         122222333222 


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC----CCCeEEcccChhccCC--CCCeEEcCCc
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK----DAPMFVVGVNEKEYKP--ELDIVSNASC  157 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~----d~~~~v~gvn~~~l~~--~~~iIs~p~C  157 (296)
                        +++..+|  .++|+||+|+|+..++++++.+.++|+  +|||++++    +.+..++++|++.++.  +.++||||||
T Consensus        56 --~~~~~~~--~~~d~vf~a~p~~~s~~~~~~~~~~g~--~VID~Ss~fR~~~~~~~vpevn~~~l~~~~~~~iIANPgC  129 (144)
T d2hjsa1          56 --DVDSFDF--SSVGLAFFAAAAEVSRAHAERARAAGC--SVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPAA  129 (144)
T ss_dssp             --EGGGCCG--GGCSEEEECSCHHHHHHHHHHHHHTTC--EEEETTCTTTTTTSCBCCHHHHGGGGGGSCSSCEEECCCH
T ss_pred             --cchhhhh--ccceEEEecCCcchhhhhccccccCCc--eEEeechhhcccccccccccccHHHHHhccCCCEEccCcH
Confidence              2333344  489999999999999999999999999  89999987    3566788899888863  5789999999


Q ss_pred             chhhhHhHHHHHHh
Q 022491          158 TTNCLAPLAKVIHD  171 (296)
Q Consensus       158 ~~tal~~~l~~L~~  171 (296)
                      |||++.++|.|+|+
T Consensus       130 ~t~~~ll~L~~~h~  143 (144)
T d2hjsa1         130 LNAVLLGELLIKHY  143 (144)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhcc
Confidence            99999999999975

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.91  E-value=8.5e-25  Score=177.96  Aligned_cols=139  Identities=19%  Similarity=0.245  Sum_probs=107.1

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcC--CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~--p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      .||||+|+ ||+|+||+|+|.+|  |..++..+++. .+.+.   .                      +...........
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s~G~---~----------------------~~~~~~~~~~~~   55 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGK---S----------------------LKFKDQDITIEE   55 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GGTTC---E----------------------EEETTEEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-ccccc---c----------------------ccccCCcccccc
Confidence            58999999 99999999999999  67888888765 33321   1                      111122222221


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCCCCCeEEcCCcc
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPELDIVSNASCT  158 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~~~~iIs~p~C~  158 (296)
                         ..+.+  ..+.|++|+|+|+..+.++++.+.++|+  .|||+|++     +.|..+|++|+++++...++||||||+
T Consensus        56 ---~~~~~--~~~~d~~f~~~~~~~s~~~~~~~~~~~~--~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAnPgC~  128 (154)
T d2gz1a1          56 ---TTETA--FEGVDIALFSAGSSTSAKYAPYAVKAGV--VVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNAA  128 (154)
T ss_dssp             ---CCTTT--TTTCSEEEECSCHHHHHHHHHHHHHTTC--EEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCTH
T ss_pred             ---cchhh--hhhhhhhhhccCccchhhHHhhhccccc--eehhcChhhhccCCcccccchhhHHHhcCcCceEECCCCH
Confidence               22223  3589999999999999999999999999  89999987     378889999999887556799999999


Q ss_pred             hhhhHhHHHHHHhhcCeeEEE
Q 022491          159 TNCLAPLAKVIHDKFGIVEGL  179 (296)
Q Consensus       159 ~tal~~~l~~L~~~~gi~~~~  179 (296)
                      |+++.+ |+||++++.|+...
T Consensus       129 tt~i~~-l~PL~~~~lik~~~  148 (154)
T d2gz1a1         129 WNSVQI-AETLHERGLVRPTA  148 (154)
T ss_dssp             HHHHHH-HHHHHHTTCCSCCS
T ss_pred             HHHHHH-HHHHHHhcCCCccc
Confidence            999877 79999998776543

>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=99.81  E-value=9.2e-20  Score=149.13  Aligned_cols=107  Identities=22%  Similarity=0.290  Sum_probs=91.4

Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCCh-hhHHHHhccccCCcee
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA-AKAVGKVLPALNGKLT  234 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~-~~~~~~~~pel~~~v~  234 (296)
                      ||+|++++|+|+||++.|||+++.++|+|++++.|           +.+|.+++|++|...+. .+......+.+..+++
T Consensus         1 SCtT~~l~~~lkpL~~~fgI~~~~vtT~qa~s~~~-----------~~~~~~~~niip~~~~~~~~~~~e~~kil~~~i~   69 (165)
T d1cf2o2           1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPA-----------QVSKGPINAIIPNPPKLPSHHGPDVKTVLDINID   69 (165)
T ss_dssp             CHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSCTT-----------CTTCCCSSCCEESSSSSSCTHHHHHHTTSCCCEE
T ss_pred             CChHHHHHHHHHHHHHHcCceEEEEEEEECCcCCc-----------cccccccccccCCCcHHHHHHHHHhhhhcCCcEE
Confidence            79999999999999999999999999999988754           24678899999988653 2223334444557899


Q ss_pred             EEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       235 ~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      .+|+|||+++||+.+++++++++++.||++++|+++++-
T Consensus        70 ~tavRVPv~~~H~~~v~v~~~~~~t~eev~~~l~~~~~v  108 (165)
T d1cf2o2          70 TMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRV  108 (165)
T ss_dssp             EEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTTE
T ss_pred             EEEEecCccceEEEEEEEEECCcCCHHHHHHHHHHCCCC
Confidence            999999999999999999999999999999999998753

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=99.77  E-value=1.8e-20  Score=150.16  Aligned_cols=128  Identities=16%  Similarity=0.127  Sum_probs=92.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHc---CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~---~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      |||||+|+ ||+|+|++|+|.+   ||.+++..+++. ...+.   .       +.|. .              +...+.
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~-~~~gk---~-------~~~~-~--------------~~~~~~   54 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTS-QIGVP---A-------PNFG-K--------------DAGMLH   54 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESS-CCSSB---C-------CCSS-S--------------CCCBCE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccc-ccccc---c-------cccC-C--------------cceeee
Confidence            58999999 9999999998764   577899888765 33321   1       1111 0              000011


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccCC----C-CCe-
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP----E-LDI-  151 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~~----~-~~i-  151 (296)
                      ...+.+  .|  .++|+||+|+|+.++++++++++++|.|.+|||+|++     +.|.+++++|++.+++    + ... 
T Consensus        55 ~~~~~~--~~--~~~DvvF~alp~~~s~~~~~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~k~~~  130 (147)
T d1mb4a1          55 DAFDIE--SL--KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFV  130 (147)
T ss_dssp             ETTCHH--HH--TTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccchh--hh--ccccEEEEecCchHHHHHhHHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCCccee
Confidence            111211  12  5899999999999999999999999987789999997     4888999999887652    1 233 


Q ss_pred             --EEcCCcchhhhHh
Q 022491          152 --VSNASCTTNCLAP  164 (296)
Q Consensus       152 --Is~p~C~~tal~~  164 (296)
                        +++|+|+|-++.+
T Consensus       131 ~~~~~p~~~~~~~~~  145 (147)
T d1mb4a1         131 GGAAEPLRRTLRIIL  145 (147)
T ss_dssp             ECTHHHHHHHHHHHH
T ss_pred             eeccCcCHhHhHHHh
Confidence              4899999988765

>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.7e-19  Score=152.31  Aligned_cols=116  Identities=13%  Similarity=0.116  Sum_probs=94.2

Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCC------------------------------------CC
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGP------------------------------------SM  198 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~------------------------------------~~  198 (296)
                      +|+|+.++++|+||++.|||+++.++||||+||+|+ .++..                                    ..
T Consensus         1 NCst~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~~v~EL~~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (221)
T d1t4ba2           1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGEL   80 (221)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHTCS
T ss_pred             CcHHHHHHHHHHHHHHHhCceEEEEEhhhhhhhhcHHHHHHHHHHHHhhhccccccccCchhhccchhhhhhhhcccccC
Confidence            699999999999999999999999999999999983 22110                                    00


Q ss_pred             ccccCcccccceeeecc-----CChhhHHHHhccccC--------CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHH
Q 022491          199 KDWRGGRAASFNIIPSS-----TGAAKAVGKVLPALN--------GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKN  265 (296)
Q Consensus       199 ~~~~~~r~~~~ni~P~~-----~g~~~~~~~~~pel~--------~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~  265 (296)
                      ....+++++++|+||+.     +|.++|+.|+.-|..        -.++.||+||||++||...++++++++++.+|+++
T Consensus        81 ~~~~f~~~iAfNvIP~ig~~~e~G~t~EE~K~~~EtrKIL~~~~~i~VsaTcVRVPV~~gHsesv~ve~~~~i~~~ev~~  160 (221)
T d1t4ba2          81 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEE  160 (221)
T ss_dssp             CCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHHHHH
T ss_pred             CccccccccccccccCCccccccceechhHHHHHHHHhhhccccccceeeEEeeeehhccchheeeeehhhccchHHHHH
Confidence            12347889999999999     456677664433321        24899999999999999999999999999999999


Q ss_pred             HHHHhh
Q 022491          266 AIKEES  271 (296)
Q Consensus       266 ~~~~~~  271 (296)
                      ++.++.
T Consensus       161 ~L~~~~  166 (221)
T d1t4ba2         161 LLAAHN  166 (221)
T ss_dssp             HHHHHC
T ss_pred             HHhhcc
Confidence            998864

>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=99.77  E-value=2.4e-19  Score=152.54  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=95.2

Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCC------------------------------------CC
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGP------------------------------------SM  198 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~------------------------------------~~  198 (296)
                      +|+|..++++|+||++.|||++..++||||+||+|+ .++..                                    ..
T Consensus         1 NCsT~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~gv~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (222)
T d1mb4a2           1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSF   80 (222)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHSTTS
T ss_pred             CcHHHHHHHHHHHHHHHhCeeEEEEeehhhhhhhcHHHHHHHHHHHHhhhccchhhhcCcchhhccchhhhhhhcccCCC
Confidence            699999999999999999999999999999999983 22100                                    00


Q ss_pred             ccccCcccccceeeecc-----CChhhHHHHhcccc---------CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHH
Q 022491          199 KDWRGGRAASFNIIPSS-----TGAAKAVGKVLPAL---------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIK  264 (296)
Q Consensus       199 ~~~~~~r~~~~ni~P~~-----~g~~~~~~~~~pel---------~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~  264 (296)
                      ....+++.+++|+||+.     +|+++|+.|+.-|.         .-+++.||+||||++||...++++++++++.+|++
T Consensus        81 ~~~~f~~~iAfNviP~i~~~~~~G~t~EE~K~~~EtrKIL~~~d~~i~VsaTCVRVPV~~gHsesV~ve~~~~is~~e~~  160 (222)
T d1mb4a2          81 PTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIE  160 (222)
T ss_dssp             SCTTTSSCCTBSEESCCSCBCSSSCBHHHHHHHHHHHHHHTCTTSCCCEECCCCEESBSSEEEEEEEEEESSCCCHHHHH
T ss_pred             ccccccccchhcccccccccccCCcccchHHHHHHHHHHhcCCCcccchhHHHHhhhhhhheeeeEEEEeeecccHHHHH
Confidence            12347889999999998     46777776543332         12478899999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 022491          265 NAIKEESE  272 (296)
Q Consensus       265 ~~~~~~~~  272 (296)
                      ++|+++..
T Consensus       161 ~~L~~~~~  168 (222)
T d1mb4a2         161 EMIATHND  168 (222)
T ss_dssp             HHHHTSCS
T ss_pred             HHHhcccc
Confidence            99998764

>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=1.4e-18  Score=141.46  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=89.4

Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeeccCCh--hhHHHHhccccCCcee
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA--AKAVGKVLPALNGKLT  234 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~~g~--~~~~~~~~pel~~~v~  234 (296)
                      |+|++++|+|+||++.|||+++.++|+|++|+.|.         .+.++....+.+|...+.  .+.+..++|+|  +++
T Consensus         1 CsT~~l~~~lkpL~~~fgi~rv~vtt~qa~s~~g~---------~~~~~~~~~~~~p~~~~~~~~~~v~~~~p~l--~i~   69 (162)
T d1b7go2           1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKE---------VKKGPINSLVPDPATVPSHHAKDVNSVIRNL--DIA   69 (162)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEEEEEEEEEESSCTTC---------CSCCCSSCCEESSSSSSCTHHHHHHTTSTTC--EEE
T ss_pred             CcHHHHHHHHHHHHHHhCEEEEEEEEEeeccCCcc---------ccccccccccccccccccccceeeeccCCCc--eEE
Confidence            99999999999999999999999999999998743         234444444444544443  35678899998  699


Q ss_pred             EEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       235 ~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                      ++|+|||+++||+.+++++++++++.||++++|+++++-
T Consensus        70 ~tavRVPv~~~h~~~~~~~~~~~~~~eev~~~l~~~~~i  108 (162)
T d1b7go2          70 TMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRI  108 (162)
T ss_dssp             EEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTTE
T ss_pred             EEEEEcCCCcceEEEEEEEECCcCCHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999998763

>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=3.1e-18  Score=142.31  Aligned_cols=116  Identities=11%  Similarity=0.199  Sum_probs=94.4

Q ss_pred             cchhh-hHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccC-----------CCCCccccCcccccceeeecc-----CCh
Q 022491          157 CTTNC-LAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVD-----------GPSMKDWRGGRAASFNIIPSS-----TGA  218 (296)
Q Consensus       157 C~~ta-l~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d-----------~~~~~~~~~~r~~~~ni~P~~-----~g~  218 (296)
                      |++++ |+++|+||++.|+|++..++|||++||+|+ +++           .......-+++.+++|+||+.     +|.
T Consensus         1 Cs~~~qL~~aL~PL~~~~~i~rv~vsTyQavSGaG~~gv~eL~~Qt~~ll~~~~~~~~~fp~~iafNviP~ig~~~~~g~   80 (190)
T d2hjsa2           1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGH   80 (190)
T ss_dssp             CHHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSC
T ss_pred             ChhHHHHHHHHHHHHHhhCceEEEEEEEechhhcCHHHHHHHHHHHHHHhccccccccccchhhcccccccccccccccc
Confidence            88765 999999999999999999999999999883 222           111123457889999999998     356


Q ss_pred             hhHHHHhccc-------cCCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491          219 AKAVGKVLPA-------LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (296)
Q Consensus       219 ~~~~~~~~pe-------l~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~  272 (296)
                      ++|+.|+..|       -...++.||+||||++||...++++++++++.+++.++|+++.+
T Consensus        81 t~EE~K~~~Et~KIL~~~~l~vs~TcvRVPV~~gHs~sv~ve~~~~i~~~e~~~~l~~~~g  141 (190)
T d2hjsa2          81 SAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKG  141 (190)
T ss_dssp             BHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHSTT
T ss_pred             chhhhhhhhhhhhhccCccccceeeeEEeehhhcchhheeeeeecCccHHHHHHHHHhCCC
Confidence            6666654433       23358999999999999999999999999999999999998764

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=99.75  E-value=2.2e-19  Score=145.85  Aligned_cols=142  Identities=18%  Similarity=0.146  Sum_probs=99.3

Q ss_pred             CCCCCeeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEE
Q 022491            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i   79 (296)
                      |++  ++||||+|+|.+|++ ++++|.++|.+|++++.++..+....    .+...++      +....+ ++       
T Consensus         1 M~k--kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~----~~a~~~~------i~~~~~-~~-------   60 (157)
T d1nvmb1           1 MNQ--KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL----ARAQRMG------VTTTYA-GV-------   60 (157)
T ss_dssp             CCS--CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH----HHHHHTT------CCEESS-HH-------
T ss_pred             CCC--CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccch----hhhhhcC------Cccccc-ce-------
Confidence            664  399999999999986 56888889999999999873332111    1111111      000000 00       


Q ss_pred             EEEecCC-CCCCCcccCCCcEEEEccCCccCHH--HHHHHHHCCCCeEEeeCCCC-CCCeEEcccChhccCC--CCCeEE
Q 022491           80 AVFGFRN-PEEIPWAKTGAEYVVESTGVFTDKD--KAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP--ELDIVS  153 (296)
Q Consensus        80 ~~~~~~d-~~~i~~~~~~~DvV~~at~~~~~~~--~~~~~l~~G~k~vvid~~~~-d~~~~v~gvn~~~l~~--~~~iIs  153 (296)
                         .  + .+..+  ..++|+||+|||++.+.+  ++.+++++|+  +|||++++ +.|++||++|.+++..  +.++|+
T Consensus        61 ---d--~l~~~~~--~~~iDiVf~ATpag~h~~~~~~~~aa~~G~--~VID~s~a~~vplvVPevN~~~~~~~~n~nlit  131 (157)
T d1nvmb1          61 ---E--GLIKLPE--FADIDFVFDATSASAHVQNEALLRQAKPGI--RLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVT  131 (157)
T ss_dssp             ---H--HHHHSGG--GGGEEEEEECSCHHHHHHHHHHHHHHCTTC--EEEECSTTCSSCBCCHHHHTTTTTTCSEEECCC
T ss_pred             ---e--eeeeccc--ccccCEEEEcCCchhHHHhHHHHHHHHcCC--EEEEccccccceEEccCcCHHHHhcCCCCCeEe
Confidence               0  0 11112  247999999999877765  5566788899  89999887 5999999999877652  347899


Q ss_pred             cCCcchhhhHhHHHHHHh
Q 022491          154 NASCTTNCLAPLAKVIHD  171 (296)
Q Consensus       154 ~p~C~~tal~~~l~~L~~  171 (296)
                      ||||.|..++.+|+++++
T Consensus       132 c~~~~tip~~~al~~~~~  149 (157)
T d1nvmb1         132 YAGNLDIMTSAALATAER  149 (157)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHH
Confidence            999999888888888876

>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.70  E-value=4.2e-18  Score=143.39  Aligned_cols=116  Identities=15%  Similarity=0.206  Sum_probs=93.1

Q ss_pred             cchhhhHhHHHHHHhhcCeeEEEEEEEeecCCccc-ccCCC----------------------CCccccCcccccceeee
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGP----------------------SMKDWRGGRAASFNIIP  213 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~-~~d~~----------------------~~~~~~~~r~~~~ni~P  213 (296)
                      |+|+.++++|+||++.|||++..++||||+||+|. +++..                      .-....+.+.+++|++|
T Consensus         1 Cst~~l~~aL~pL~~~~gi~~v~vsTyQAvSGaG~~gv~eL~~q~~~~l~~~~~~~~~~~~~~p~~~~~~~~~iafN~iP   80 (202)
T d2gz1a2           1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALP   80 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBC
T ss_pred             CcHHHHHHHHHHHHHhcCceEEEEEehHhHHhhhHHHHHHHHHHHHHHhcccccccccchhcccccccccceehhhhhhh
Confidence            99999999999999999999999999999999983 33210                      00122356789999999


Q ss_pred             cc-----CChhhHHHHhcccc-------CCceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491          214 SS-----TGAAKAVGKVLPAL-------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (296)
Q Consensus       214 ~~-----~g~~~~~~~~~pel-------~~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~  272 (296)
                      +.     +|.++|+.++.-|.       .-.++.+|+|||+++||...++++++++++.+++++++.++.+
T Consensus        81 ~i~~~~~~g~t~EE~k~~~E~~kIl~~~~~~vsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~g  151 (202)
T d2gz1a2          81 QIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPG  151 (202)
T ss_dssp             CCSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHTSTT
T ss_pred             cccchhcccchhhhhHHhhhhcceecccccCcccceEEEEEeecceEEEEEeeehhccHHHHHHHHhcCCC
Confidence            88     35566665443332       2258899999999999999999999999999999999998764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=4.6e-17  Score=130.20  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=79.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcC---CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~---p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      +||||+|+ |++|++++++|.+|   |..+++++.+. .+.+.   .       ..|. .     .  .+       .+.
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss-~s~g~---~-------~~~~-~-----~--~~-------~~~   55 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQA---A-------PSFG-G-----T--TG-------TLQ   55 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSB---C-------CGGG-T-----C--CC-------BCE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecc-ccccc---c-------cccc-C-----C--ce-------eee
Confidence            69999999 99999999877655   56788777654 33221   0       0111 0     0  01       011


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCC-----CCCeEEcccChhccC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYK  146 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~-----d~~~~v~gvn~~~l~  146 (296)
                      .  ..+..+|  .++|+||+|+|+..++++++.+.++|++.+|||++++     |.|+++|++|++.|+
T Consensus        56 ~--~~~~~~~--~~~DivF~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~  120 (146)
T d1t4ba1          56 D--AFDLEAL--KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT  120 (146)
T ss_dssp             E--TTCHHHH--HTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred             c--ccchhhh--hcCcEEEEecCchHHHHhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHH
Confidence            1  1111122  5899999999999999999999999988789999997     589999999988775

>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1.4e-14  Score=117.17  Aligned_cols=102  Identities=21%  Similarity=0.256  Sum_probs=84.2

Q ss_pred             CcchhhhHhHHHHHHhhcCeeEEEEEEEeecCCcccccCCCCCccccCcccccceeeecc--CChhhHHHHhccccCCce
Q 022491          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS--TGAAKAVGKVLPALNGKL  233 (296)
Q Consensus       156 ~C~~tal~~~l~~L~~~~gi~~~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~--~g~~~~~~~~~pel~~~v  233 (296)
                      ||+||+|+++|+||++.||+.+..+..-        ..|     .....+.+++|++|+.  .++..+..+.+|++  ++
T Consensus         1 SC~T~~l~~~L~pL~~~~~~~rvv~vr~--------a~d-----p~~~~~~i~~nviP~~~~~~~~~~d~~~v~~i--~v   65 (162)
T d2czca1           1 SCNTTGLVRTLSAIREYADYVYAVMIRR--------AAD-----PNDTKRGPINAIKPTVEVPSHHGPDVQTVIPI--NI   65 (162)
T ss_dssp             CHHHHHHHHHHHHHGGGEEEEEEEEEEE--------SSC-----TTCCSCCCSSCCEECCSSSCTHHHHHTTTSCC--CE
T ss_pred             CChHHHHHHHHHHHHHHhCceEEEEECc--------ccC-----cccccCCcccccccCCCCCCccchhhcccCCe--EE
Confidence            7999999999999999999877654321        112     1124567889999997  36777777777876  49


Q ss_pred             eEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhc
Q 022491          234 TGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (296)
Q Consensus       234 ~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~  272 (296)
                      +.+|+|||+++||...++++++++++.+|+.++|+++.+
T Consensus        66 ~~t~vRVPv~~gH~~~v~ve~~~~~~~~ev~~~l~~~pg  104 (162)
T d2czca1          66 ETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTR  104 (162)
T ss_dssp             EEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTT
T ss_pred             EEEEEEeeeeeeeEEEEEEEECCCCCHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999998775

>d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.49  E-value=2.3e-14  Score=115.13  Aligned_cols=108  Identities=9%  Similarity=0.070  Sum_probs=80.2

Q ss_pred             cchhhhHhHHHHHHhhcCeeE---EEEEEEeecCCcccccCCCCCccccCcccccceeeecc---CChhhHHHHhccccC
Q 022491          157 CTTNCLAPLAKVIHDKFGIVE---GLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALN  230 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~---~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~---~g~~~~~~~~~pel~  230 (296)
                      ||+|+..++|.||.+...|+.   ..+...-.+||+|+......  .     ....|+.||.   |.|.+|+.+.+   .
T Consensus         1 CyaTa~~l~L~PL~~~gli~~~~~i~i~a~SG~SGaG~~~~~~~--~-----~~~~~~~~Y~~~~HrH~pEI~q~l---~   70 (155)
T d2g17a2           1 CYPTAAQLSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAISN--S-----FCEVSLQPYGVFTHRHQPEIAVHL---G   70 (155)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCSTT--S-----GGGCSEEECSTTTCTHHHHHHHHH---T
T ss_pred             ChHHHHHHHHHHHHHcCCCCCCCceEEEeeeccccccccchhhh--c-----cccceeeeccccccccHHHHHHHh---C
Confidence            999999999999988655542   23344445555665433221  1     1224667766   56677777654   3


Q ss_pred             CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcCc
Q 022491          231 GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK  274 (296)
Q Consensus       231 ~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~~  274 (296)
                      .++.|+|+.+|++||+++++|++++++++.+|++++|+++|+++
T Consensus        71 ~~i~F~Phl~p~~RGIl~Ti~~~l~~~~s~~~i~~~~~~~Y~~e  114 (155)
T d2g17a2          71 AEVIFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQKAYGDK  114 (155)
T ss_dssp             SCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTC
T ss_pred             cCceeeecccccccccccccccccchhhhhHHHHHHHHHHHhhh
Confidence            46899999999999999999999999999999999999999863

>d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.37  E-value=4.5e-13  Score=108.66  Aligned_cols=112  Identities=8%  Similarity=0.028  Sum_probs=80.8

Q ss_pred             cchhhhHhHHHHHHhhcCeeE--EEEEEEeecCCcccccCCCCCccccCcccccceeeecc---CChhhHHHHhccccC-
Q 022491          157 CTTNCLAPLAKVIHDKFGIVE--GLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALN-  230 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~--~~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~---~g~~~~~~~~~pel~-  230 (296)
                      ||+|+..++|.||.+..-++.  ..++..-.+||+|+.........     ....|+.|+.   |.|.+|+.+.+..+. 
T Consensus         1 CyaT~~il~l~PL~~~gli~~~~i~i~a~SG~SGaGk~~~~~~~~~-----~~~~n~~~Y~~~~HrH~pEi~q~l~~~~~   75 (165)
T d2cvoa2           1 CYPTSIQLPLVPLIKAKLIKVSNIIIDAKSGVSGAGRGAKEANLYT-----EIAEGIHAYGIKGHRHVPEIEQGLSEAAE   75 (165)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGGGBHH-----HHTTCCEECSCSCCTHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHcCCCCCCCeEEEEeccccccccccchhhhhh-----hhhhceeccchhccccCcHHHHHhhhccC
Confidence            999999999999998755532  33334445555555443221111     1223555555   667788777654332 


Q ss_pred             --CceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          231 --GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       231 --~~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                        -++.|+++.+|+.||++++++++++++++.+|++++|+++|++
T Consensus        76 ~~~~~~F~P~l~p~~RGil~ti~~~~~~~~~~~~i~~~~~~~Y~~  120 (165)
T d2cvoa2          76 SKVTISFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHLKSTYEG  120 (165)
T ss_dssp             SCCCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTT
T ss_pred             CCccEEEEeeeccccceeEEecccccccccchHHHHHHHHHHhhh
Confidence              3578999999999999999999999999999999999999986

>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=2.5e-12  Score=104.04  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=77.1

Q ss_pred             cchhhhHhHHHHHHhhcCeeEE--EEEEEeecCCcccccCCCCCccccCcccccceeeecc---CChhhHHHHhccccCC
Q 022491          157 CTTNCLAPLAKVIHDKFGIVEG--LMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS---TGAAKAVGKVLPALNG  231 (296)
Q Consensus       157 C~~tal~~~l~~L~~~~gi~~~--~~~~v~a~sg~~~~~d~~~~~~~~~~r~~~~ni~P~~---~g~~~~~~~~~pel~~  231 (296)
                      ||+|++.++|.||.+...|+..  .+...-.+||+|+.........     ....|+.|+.   |.|.+|+.+.+....+
T Consensus         1 CyaT~~~l~l~PLv~~gli~~~~i~i~a~SG~SGaGk~~~~~~~~~-----~~~~~~~~Y~~~~HrH~pEi~q~l~~~~~   75 (163)
T d1vkna2           1 CYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVDYLFS-----EVNESLRPYNVAKHRHVPEMEQELGKISG   75 (163)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGGGBHH-----HHTTCCEECSCSCCTHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHcCCCCCCceEEEeeccccccccccccccccc-----ccccccccchhhhccccHHHHHHHHhhcC
Confidence            9999999999999987655432  2333334455555433221101     1234555655   6677777776654433


Q ss_pred             ---ceeEEEEEeeeCceEEEEEEEEeecCCCHHHHHHHHHHhhcC
Q 022491          232 ---KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (296)
Q Consensus       232 ---~v~~~~~~VP~~~g~~~~~~~~l~~~~~~~ev~~~~~~~~~~  273 (296)
                         ++.|+|+.+|++||++++++++++  .+.+|++++|+++|++
T Consensus        76 ~~~~~~F~Phl~p~~RGil~ti~~~~~--~s~~~i~~~~~~~Y~~  118 (163)
T d1vkna2          76 KKVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFYKN  118 (163)
T ss_dssp             SCCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHHTT
T ss_pred             CcccEEEEEeeccccceeeeeeeeccc--ccchHHHHHHHHHHhh
Confidence               589999999999999999998874  4789999999999986

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.00  E-value=7.7e-10  Score=89.70  Aligned_cols=81  Identities=21%  Similarity=0.361  Sum_probs=61.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|+|++|+.+++.+.++|++|+++|.++....         ...++              .         ....
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~--------------~---------~~~~   50 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTP--------------V---------FDVA   50 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSC--------------E---------EEGG
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc---------ccccc--------------c---------ccch
Confidence            38999999999999999999999999999999872211         11000              0         0111


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA  121 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~  121 (296)
                      +.+.+   ..++|+|+.|||+..+.+.+.+++++|.
T Consensus        51 ~~~~~---~~~~D~Vvi~tp~~~h~~~a~~aL~aG~   83 (170)
T d1f06a1          51 DVDKH---ADDVDVLFLCMGSATDIPEQAPKFAQFA   83 (170)
T ss_dssp             GGGGT---TTTCSEEEECSCTTTHHHHHHHHHTTTS
T ss_pred             hhhhh---ccccceEEEeCCCcccHHHHHHHHHCCC
Confidence            22222   3579999999999999999999999998

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=5.9e-08  Score=77.58  Aligned_cols=91  Identities=18%  Similarity=0.240  Sum_probs=65.0

Q ss_pred             eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCCh-hhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~-~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      |+||||+|+|.+|+. .++.+..+|++++++|.|+..+. ...+      ..|+              .       +.+ 
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~------~~~~--------------~-------~~~-   52 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPIC------ESWR--------------I-------PYA-   52 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHH------HHHT--------------C-------CBC-
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhh------hccc--------------c-------ccc-
Confidence            589999999999976 68899999999999999883332 1111      1110              0       001 


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                       .+.+++   ..++|+|+.|||+..+.+.+..++++|. .+++.-|
T Consensus        53 -~~~~~l---~~~~D~V~I~tp~~~h~~~~~~al~~gk-~V~~EKP   93 (164)
T d1tlta1          53 -DSLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGV-HVCVDKP   93 (164)
T ss_dssp             -SSHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTC-EEEEESS
T ss_pred             -ccchhh---hhhcccccccccchhccccccccccccc-eeecccc
Confidence             122233   2478999999999999999999999995 5777544

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.58  E-value=2.1e-08  Score=81.75  Aligned_cols=98  Identities=16%  Similarity=0.280  Sum_probs=67.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||||+|+|++|+.+++.+...+++++++|.++  +.+.. ..+  ...++ ++       ..         ..++.  
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~--~~~~~-~~~--~~~~~-~~-------~~---------~~~~~--   56 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASR--SLEKA-KAF--ATANN-YP-------ES---------TKIHG--   56 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECS--SHHHH-HHH--HHHTT-CC-------TT---------CEEES--
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeC--Ccccc-ccc--hhccc-cc-------cc---------eeecC--
Confidence            4899999999999999999999999999999987  33211 111  11111 00       00         01222  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      |.+++ ....++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        57 ~~~~l-l~~~~iD~v~I~tp~~~h~~~~~~~l~~g~-~v~~EKP   98 (184)
T d1ydwa1          57 SYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKGK-HILLEKP   98 (184)
T ss_dssp             SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTTC-EEEECSS
T ss_pred             cHHHh-hhccccceeeecccchhhcchhhhhhhccc-eeecccc
Confidence            33333 223579999999999999999999999996 4666443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=7.7e-08  Score=78.22  Aligned_cols=95  Identities=24%  Similarity=0.266  Sum_probs=65.2

Q ss_pred             eeEEEEEecCHHHHH-HHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            6 KIKIGINGFGRIGRL-VARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~-l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      ++||||+|+|++|+. +++.+.++++ +++++|.|+  +.+....   +.+.++    .         .       .++.
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~--~~~~~~~---~~~~~~----~---------~-------~~~~   57 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSR--TRSHAEE---FAKMVG----N---------P-------AVFD   57 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECS--SHHHHHH---HHHHHS----S---------C-------EEES
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEec--cHhhhhh---hhcccc----c---------c-------ceee
Confidence            489999999999987 6888888765 799999987  3321111   111111    0         0       0121


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        +.+++ ....++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        58 --~~~el-l~~~~id~v~I~tp~~~h~~~~~~al~~gk-~V~~EKP   99 (181)
T d1zh8a1          58 --SYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKGV-HVICEKP   99 (181)
T ss_dssp             --CHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             --eeecc-ccccccceeeccccccccccccccccccch-hhhcCCC
Confidence              33333 224579999999999999999999999994 5667544

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.8e-07  Score=74.90  Aligned_cols=117  Identities=24%  Similarity=0.304  Sum_probs=75.3

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +|||+|+|+ |++|+++++++.+.++++|++..++.... .    +  ....+.+. +.     +      ...+.+.  
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~-~----~--g~d~~~~~-~~-----~------~~~~~~~--   62 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSS-L----L--GSDAGELA-GA-----G------KTGVTVQ--   62 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCT-T----C--SCCTTCSS-SS-----S------CCSCCEE--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccch-h----c--cchhhhhh-cc-----c------cCCceee--
Confidence            589999999 99999999999999999999988762221 1    1  11111111 00     0      0011122  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccC------CCCCeEEcCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYK------PELDIVSNAS  156 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~------~~~~iIs~p~  156 (296)
                      .+++.+   ...+|+++|-|......+.++.+.+.|.+ +|+-.         -|+++++++      +...++-.|+
T Consensus        63 ~~~~~~---~~~~DViIDFs~p~~~~~~~~~a~~~~~~-~ViGT---------TG~~~~~~~~i~~~a~~ipi~~apN  127 (162)
T d1diha1          63 SSLDAV---KDDFDVFIDFTRPEGTLNHLAFCRQHGKG-MVIGT---------TGFDEAGKQAIRDAAADIAIVFAAN  127 (162)
T ss_dssp             SCSTTT---TTSCSEEEECSCHHHHHHHHHHHHHTTCE-EEECC---------CCCCHHHHHHHHHHTTTSCEEECSC
T ss_pred             ccHHHH---hcccceEEEeccHHHHHHHHHHHHhccce-eEEec---------CCCcHHHHHHHHHHcCCCCEEEEcc
Confidence            245554   36899999999999889999999999874 33422         256654432      1345676665

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.43  E-value=2.9e-07  Score=77.25  Aligned_cols=99  Identities=12%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             CeeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEe
Q 022491            5 KKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~   83 (296)
                      .++||||+|+|.+|+. +++.+..++.++|++|.|+  +.+....   +...|+ ++               ...+..+ 
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~--~~~~a~~---~~~~~~-i~---------------~~~~~~~-   89 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSG--NAEKAKI---VAAEYG-VD---------------PRKIYDY-   89 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECS--CHHHHHH---HHHHTT-CC---------------GGGEECS-
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecC--CHHHHHH---HHHhhc-cc---------------ccccccc-
Confidence            3599999999999974 7788889999999999987  3322111   112121 00               0001111 


Q ss_pred             cCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        84 ~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                       .|.+++ .+..++|+|+.|||+..+.+.+..++++|. .+++.-
T Consensus        90 -~d~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~~gk-~v~~EK  131 (221)
T d1h6da1          90 -SNFDKI-AKDPKIDAVYIILPNSLHAEFAIRAFKAGK-HVMCEK  131 (221)
T ss_dssp             -SSGGGG-GGCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECS
T ss_pred             -Cchhhh-cccccceeeeeccchhhhhhHHHHhhhcch-hhhcCC
Confidence             244453 234579999999999999999999999995 466643

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.38  E-value=6.8e-07  Score=71.37  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=63.2

Q ss_pred             eeEEEEEecCHHHHH-HHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~-l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      +|||||+|+|.+|+. +++.+.++++++++ +.++  +.+...   .+.+.++.-.                    ++  
T Consensus         1 tirvgiiG~G~~~~~~~~~~l~~~~~~~~~-~~d~--~~~~~~---~~~~~~~~~~--------------------~~--   52 (167)
T d1xeaa1           1 SLKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTR--NPKVLG---TLATRYRVSA--------------------TC--   52 (167)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECS--CHHHHH---HHHHHTTCCC--------------------CC--
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhCCCcEEE-EEEC--CHHHHH---HHHHhccccc--------------------cc--
Confidence            489999999999976 78899999999987 5555  322111   1122121000                    11  


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .|.+++ . +.++|+|+.|||...+.+.+..++++|.. +++.-|
T Consensus        53 ~~~~~l-l-~~~iD~V~I~tp~~~H~~~~~~al~~gk~-V~~EKP   94 (167)
T d1xeaa1          53 TDYRDV-L-QYGVDAVMIHAATDVHSTLAAFFLHLGIP-TFVDKP   94 (167)
T ss_dssp             SSTTGG-G-GGCCSEEEECSCGGGHHHHHHHHHHTTCC-EEEESC
T ss_pred             ccHHHh-c-ccccceecccccccccccccccccccccc-cccCCC
Confidence            134443 2 35799999999999999999999999964 667544

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=2.5e-07  Score=74.44  Aligned_cols=92  Identities=17%  Similarity=0.228  Sum_probs=61.3

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEec
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~   84 (296)
                      .++||||+|+|++|+..++.+.+.+..+++++.+. .+.+    .+  ...            .+  ..       .   
T Consensus         6 ~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~-~~~~----~~--~~~------------~~--~~-------~---   54 (172)
T d1lc0a1           6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF-VSRR----EL--GSL------------DE--VR-------Q---   54 (172)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE-ECSS----CC--CEE------------TT--EE-------B---
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec-cchH----HH--HHh------------hc--cC-------c---
Confidence            46999999999999999999988776555555543 1111    00  000            00  10       0   


Q ss_pred             CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        85 ~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      .+.+++ +...++|+|+.|||...+.+.+..++++|. .+++.-|
T Consensus        55 ~~~~e~-l~~~~iD~V~I~tp~~~H~~~~~~al~~gk-~V~~EKP   97 (172)
T d1lc0a1          55 ISLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAGK-HVLVEYP   97 (172)
T ss_dssp             CCHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTTC-EEEEESC
T ss_pred             CCHHHH-HhCCCcchhhhcccccccccccccccccch-hhhcCCC
Confidence            022222 224588999999999999999999999995 5667543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=7.7e-06  Score=62.99  Aligned_cols=69  Identities=22%  Similarity=0.320  Sum_probs=55.9

Q ss_pred             EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      ||+|+|+ |++|+++++.+.+.+++++++..|. .+.      +  +                  .              
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~-~~~------~--~------------------~--------------   39 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA-GDP------L--S------------------L--------------   39 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT-TCC------T--H------------------H--------------
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCc------h--h------------------h--------------
Confidence            7999998 9999999999999999999998765 111      0  0                  0              


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                         +.  ..++|+|||-|......+.++.+++.|++
T Consensus        40 ---~~--~~~~DvvIDFS~p~~~~~~~~~~~~~~~~   70 (135)
T d1yl7a1          40 ---LT--DGNTEVVIDFTHPDVVMGNLEFLIDNGIH   70 (135)
T ss_dssp             ---HH--TTTCSEEEECCCTTTHHHHHHHHHHTTCE
T ss_pred             ---hc--cccCCEEEEcccHHHHHHHHHHHHhcCCC
Confidence               00  13679999999999999999999999985

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.91  E-value=3.6e-06  Score=70.98  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             eeEEEEEecC----HHHHHHHHHHHc-CCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEE
Q 022491            6 KIKIGINGFG----RIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (296)
Q Consensus         6 ~i~vgI~G~G----~iG~~l~r~l~~-~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~   80 (296)
                      ++||||+|+|    ++++..+..+.+ .|+++|++|.++  +.+.....   ...|+. .       .          ..
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~--~~~~~~~~---~~~~~~-~-------~----------~~   72 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNP--TLKSSLQT---IEQLQL-K-------H----------AT   72 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECS--CHHHHHHH---HHHTTC-T-------T----------CE
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcC--CHHHHHHH---HHhccc-c-------c----------ce
Confidence            4999999995    577888888766 578999999987  33211111   111110 0       0          01


Q ss_pred             EEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC-----CeEEeeCC
Q 022491           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVVISAP  129 (296)
Q Consensus        81 ~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~-----k~vvid~~  129 (296)
                      .+.  +.+++ +...++|+|+.|||...+.+.+..++++|.     |.+++.-|
T Consensus        73 ~~~--~~~~l-~~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKP  123 (237)
T d2nvwa1          73 GFD--SLESF-AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWA  123 (237)
T ss_dssp             EES--CHHHH-HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESS
T ss_pred             eec--chhhc-ccccccceeeccCCCcchhhHHHHHHHhcccccCCceEEEecc
Confidence            121  34443 224689999999999999999999999985     56777644

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.64  E-value=2.6e-05  Score=59.19  Aligned_cols=88  Identities=16%  Similarity=0.077  Sum_probs=63.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      ++||.|+|||.+|+.|++.+..++.+++++..|.  +++.          .     |         -.++|.  +++...
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDd--d~~k----------~-----G---------~~I~Gi--~V~~~~   54 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDV--DPEK----------V-----G---------RPVRGG--VIEHVD   54 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEES--CTTT----------T-----T---------CEETTE--EEEEGG
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeC--chHh----------c-----C---------CEECCE--EEecHH
Confidence            3799999999999999998887888999999886  3310          0     1         122332  344333


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCe
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK  123 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~  123 (296)
                      +.+++-  ...+++++.|.|.....+.+..+.+.|.|.
T Consensus        55 ~l~~~~--~~~i~iai~~i~~~~~~~I~d~l~~~gIk~   90 (126)
T d2dt5a2          55 LLPQRV--PGRIEIALLTVPREAAQKAADLLVAAGIKG   90 (126)
T ss_dssp             GHHHHS--TTTCCEEEECSCHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHHH--hhcccEEEEeCCHHHHHHHHHHHHHcCCCE
Confidence            333331  356899999999988888888899999873

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.63  E-value=4.5e-05  Score=60.09  Aligned_cols=31  Identities=32%  Similarity=0.448  Sum_probs=25.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||||+|+|.+|..+++.|.+.. .++.+ .|+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g-~~V~~-~d~   31 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRG-HYLIG-VSR   31 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEE-ECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC-CEEEE-EEC
Confidence            58999999999999999998764 56654 466

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.00014  Score=55.07  Aligned_cols=92  Identities=25%  Similarity=0.359  Sum_probs=61.3

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |||||+|+ |++|+.+.+++.++ +.++++..+.  +           +                 .             
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~-~~~l~~~id~--~-----------~-----------------~-------------   36 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEK-GHELVLKVDV--N-----------G-----------------V-------------   36 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEET--T-----------E-----------------E-------------
T ss_pred             CEEEEECCCCHHHHHHHHHHhcC-CCeEEEEECC--C-----------c-----------------H-------------
Confidence            58999999 99999999887665 4666554332  0           0                 0             


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCCCCCCeEEcccChhccC------CCCCeEEcCCcc
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYK------PELDIVSNASCT  158 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~~d~~~~v~gvn~~~l~------~~~~iIs~p~C~  158 (296)
                        +.+    .++|+|+|-|......+.++.+++.++. +|+ ..        -|+++++++      +..+++-.|++.
T Consensus        37 --~~~----~~~DVvIDFS~p~~~~~~l~~~~~~~~p-~Vi-GT--------TG~~~~~~~~i~~~ak~~pv~~a~N~s   99 (128)
T d1vm6a3          37 --EEL----DSPDVVIDFSSPEALPKTVDLCKKYRAG-LVL-GT--------TALKEEHLQMLRELSKEVPVVQAYSRT   99 (128)
T ss_dssp             --EEC----SCCSEEEECSCGGGHHHHHHHHHHHTCE-EEE-CC--------CSCCHHHHHHHHHHTTTSEEEECSCTH
T ss_pred             --HHh----ccCCEEEEecCHHHHHHHHHHHHhcCCC-EEE-Ec--------CCCCHHHHHHHHHHHhhCCEEeeeccC
Confidence              011    3679999999999999999999999874 333 32        266654432      134666666654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.38  E-value=0.00021  Score=56.27  Aligned_cols=92  Identities=16%  Similarity=0.127  Sum_probs=53.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC-CCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||+|+|+|.+|..+++.|.+. ++.+|.+. |+  +.+.+.+..+  .       +.+    +  .        ...  
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~-D~--~~~~~~~a~~--~-------~~~----~--~--------~~~--   53 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGY-DI--NPESISKAVD--L-------GII----D--E--------GTT--   53 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEE-CS--CHHHHHHHHH--T-------TSC----S--E--------EES--
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEE-EC--ChHHHHHHHH--h-------hcc----h--h--------hhh--
Confidence            5799999999999999999865 45676665 55  3332222111  0       000    0  0        111  


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHHH---HHCCCCeEEeeCCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~---l~~G~k~vvid~~~  130 (296)
                      +.+..  ...+.|+||.|+|.....+....+   +..+.  +++|.++
T Consensus        54 ~~~~~--~~~~~dlIila~p~~~~~~vl~~l~~~~~~~~--ii~d~~s   97 (171)
T d2g5ca2          54 SIAKV--EDFSPDFVMLSSPVRTFREIAKKLSYILSEDA--TVTDQGS   97 (171)
T ss_dssp             CGGGG--GGTCCSEEEECSCHHHHHHHHHHHHHHSCTTC--EEEECCS
T ss_pred             hhhhh--hccccccccccCCchhhhhhhhhhhccccccc--ccccccc
Confidence            11211  124789999999987666655544   33444  6776543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.06  E-value=0.00048  Score=53.29  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=52.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |||||+|+|.+|..+++.|.++. +++...+.. .....  ..+  ..       +     .+  +         ..  +
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g-~~v~~~~~~-~~~~~--~~~--~~-------~-----~~--~---------~~--~   49 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRG-VEVVTSLEG-RSPST--IER--AR-------T-----VG--V---------TE--T   49 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEECCTT-CCHHH--HHH--HH-------H-----HT--C---------EE--C
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCC-CeEEEEcCc-hhHHH--HHh--hh-------c-----cc--c---------cc--c
Confidence            58999999999999999999874 676655433 22211  111  00       0     00  1         00  2


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                      ++++   ..++|+||.|+|.....+.+..... ..+..++|.+
T Consensus        50 ~~e~---~~~~diIi~~v~~~~~~~~~~~~~~-~~~~~~id~s   88 (152)
T d1i36a2          50 SEED---VYSCPVVISAVTPGVALGAARRAGR-HVRGIYVDIN   88 (152)
T ss_dssp             CHHH---HHTSSEEEECSCGGGHHHHHHHHHT-TCCSEEEECS
T ss_pred             HHHH---HhhcCeEEEEecCchHHHHHHhhcc-cCCceeeccC
Confidence            3443   3579999999998766665544432 3334666654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.04  E-value=0.0013  Score=50.62  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=27.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ++||+|+|+|++|..++..|...+-++-+.+.|.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~   38 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV   38 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeec
Confidence            3799999999999999999988776544555565

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.96  E-value=0.00048  Score=53.32  Aligned_cols=32  Identities=13%  Similarity=0.202  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||||++|+|.+|..+++.|.+....++ .+.++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i-~v~~r   32 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRI-YIANR   32 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEE-EEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcE-EEEeC
Confidence            589999999999999997766543454 45566

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.0024  Score=50.20  Aligned_cols=105  Identities=14%  Similarity=0.178  Sum_probs=58.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCC---CcEEEEEecCCCChhhhhhccccccc----CCCCcCcceeeeCCceeEECCEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSV----HGQWKHNELKVKDEKTLLFGEKP   78 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p---~~elv~i~~~~~~~~~~a~~l~~~s~----~~~~~~~~v~~~~~~~l~~~~~~   78 (296)
                      +++|+|+|+|-+|+.++++|.++.   +++++++.+. ...     ++..+-.    ...|. ...  ... ..    . 
T Consensus         4 ~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s-~~~-----~~~~~g~~~~~~~~~~-~~~--~~~-~~----~-   68 (168)
T d1ebfa1           4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA-ERS-----LISKDFSPLNVGSDWK-AAL--AAS-TT----K-   68 (168)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS-SBE-----EECSSCSCCSCTTCHH-HHH--HTC-CC----B-
T ss_pred             EEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEe-eee-----eecccccchHhhhhhh-hhh--hhc-cc----c-
Confidence            599999999999999999998654   3678888764 211     1110000    00000 000  000 00    0 


Q ss_pred             EEEEecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCC
Q 022491           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (296)
Q Consensus        79 i~~~~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~  129 (296)
                        .....+..+..-.....|++++|++.....+...++++.|+  -||++.
T Consensus        69 --~~~~~~~~~~~~~~~~~~vivd~t~~~~~~~~~~~aL~~G~--hVVTAN  115 (168)
T d1ebfa1          69 --TLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGI--SIATPN  115 (168)
T ss_dssp             --CCCHHHHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTC--EEECCC
T ss_pred             --cccHHHHHHHhccCCCceEEEEecCChHHHHHHHHHHHcCC--eEEecC
Confidence              00000000000012457899999998777777788999999  777654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00093  Score=53.93  Aligned_cols=30  Identities=30%  Similarity=0.318  Sum_probs=26.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .||.|.|+ |++|+.+++.|.+.. .++.++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~   34 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAG-YEVTVLV   34 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence            68999999 999999999888775 6777775

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.00022  Score=55.17  Aligned_cols=86  Identities=19%  Similarity=0.087  Sum_probs=45.2

Q ss_pred             EEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCCC
Q 022491            9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPE   88 (296)
Q Consensus         9 vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~~   88 (296)
                      ||++|+|.+|+.+++.|.+.  .++..|.++  +.+..-.+   ...++..                      .  .+++
T Consensus         2 IgfIG~G~mg~~l~~~L~~~--~~~~~v~~R--~~~~~~~l---~~~~~~~----------------------~--~~~~   50 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDR--YEIGYILSR--SIDRARNL---AEVYGGK----------------------A--ATLE   50 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC------CCCEECS--SHHHHHHH---HHHTCCC----------------------C--CSSC
T ss_pred             EEEEeCcHHHHHHHHHHHhC--CCEEEEEeC--Chhhhcch---hhccccc----------------------c--cchh
Confidence            69999999999999988653  344455665  33321111   1111100                      0  1333


Q ss_pred             CCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           89 EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        89 ~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +.   ....|+||.|+|.....+.+.++...|.  +++|.++
T Consensus        51 ~~---~~~~DiVil~v~d~~i~~v~~~l~~~~~--ivi~~s~   87 (153)
T d2i76a2          51 KH---PELNGVVFVIVPDRYIKTVANHLNLGDA--VLVHCSG   87 (153)
T ss_dssp             CC---CC---CEEECSCTTTHHHHHTTTCCSSC--CEEECCS
T ss_pred             hh---hccCcEEEEeccchhhhHHHhhhcccce--eeeeccc
Confidence            43   2578999999998765555444322333  6676554

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.58  E-value=0.0034  Score=47.15  Aligned_cols=82  Identities=21%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|+|+|+    |..|..+++.|..+..-++..||-. .           +++.                   |  ++.+
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~-~-----------~~i~-------------------G--~~~y   55 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK-E-----------EEVQ-------------------G--VKAY   55 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS-C-----------SEET-------------------T--EECB
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC-c-----------cccC-------------------C--eEee
Confidence            57999997    8889999999887655677777632 1           1111                   1  1122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .  +..+++   ..+|+|+.++|.....+.++++.+.|+|.+++
T Consensus        56 ~--sl~dlp---~~vDlvvi~vp~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          56 K--SVKDIP---DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             S--STTSCS---SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             c--chhhcC---CCCceEEEecChHHhHHHHHHHHHcCCCEEEE
Confidence            2  456664   57999999999999999999999999997665

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.49  E-value=0.0016  Score=50.73  Aligned_cols=31  Identities=29%  Similarity=0.345  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .|||++|.|.+|..+++.|.++. .++ .+.++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g-~~v-~~~d~   32 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAG-YLL-NVFDL   32 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEE-EEECS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCC-CeE-EEEEC
Confidence            68999999999999999998875 454 44555

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.47  E-value=0.002  Score=51.16  Aligned_cols=93  Identities=14%  Similarity=0.084  Sum_probs=50.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      |||+|+|+|.+|..++..|.+.. -++ .+-.+..+.+.. ..+.....++.+. .          .+....+  ....|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g-~~V-~l~~r~~~~~~~-~~i~~~~~~~~~~-~----------~~~~~~i--~~~~~   64 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG-NEV-RIWGTEFDTEIL-KSISAGREHPRLG-V----------KLNGVEI--FWPEQ   64 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC-CEE-EEECCGGGHHHH-HHHHTTCCBTTTT-B----------CCCSEEE--ECGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEE-EEEEecccHHHH-HHHhhhhhhhhhc-c----------hhccccc--ccccc
Confidence            58999999999999999998643 222 222331232211 1111122233332 1          0111222  21223


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHH
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK  118 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~  118 (296)
                      .++.   ..++|+||.|+|....++.+.++..
T Consensus        65 ~~~~---~~~ad~Ii~avps~~~~~~~~~l~~   93 (180)
T d1txga2          65 LEKC---LENAEVVLLGVSTDGVLPVMSRILP   93 (180)
T ss_dssp             HHHH---HTTCSEEEECSCGGGHHHHHHHHTT
T ss_pred             HHHH---HhccchhhcccchhhhHHHHHhhcc
Confidence            3322   3579999999999877777766543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.43  E-value=0.0016  Score=49.86  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=27.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+|.+|..++..|...+-+.-+.+.|.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di   33 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDV   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecc
Confidence            589999999999999999988876644556675

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.43  E-value=0.0027  Score=48.66  Aligned_cols=28  Identities=36%  Similarity=0.531  Sum_probs=22.9

Q ss_pred             CCCCCeeEEEEEe-cCHHHHHHHHHHHcCC
Q 022491            1 MAGDKKIKIGING-FGRIGRLVARVALQRD   29 (296)
Q Consensus         1 m~~~m~i~vgI~G-~G~iG~~l~r~l~~~p   29 (296)
                      |+..| .||+|+| +|.+|+.+++.|.+..
T Consensus         5 ~~~~~-~kI~iIGg~G~mG~~la~~L~~~G   33 (152)
T d2pv7a2           5 INSDI-HKIVIVGGYGKLGGLFARYLRASG   33 (152)
T ss_dssp             SCTTC-CCEEEETTTSHHHHHHHHHHHTTT
T ss_pred             cCCCC-CeEEEEcCCCHHHHHHHHHHHHcC
Confidence            44433 7999999 6999999999998764

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.39  E-value=0.006  Score=44.88  Aligned_cols=83  Identities=19%  Similarity=0.319  Sum_probs=59.9

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|||+|+    |..|..+++.|.++. +++..||-. .           ++..            |         ++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pVnP~-~-----------~~i~------------G---------~~~y   47 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPN-Y-----------DEIE------------G---------LKCY   47 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT-C-----------SEET------------T---------EECB
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEEccc-c-----------cccc------------C---------cccc
Confidence            36999996    678999999999987 488887632 1           1111            1         1122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      .  +..+++   ..+|+++.|+|.....+.++++.+.|+|.+++..
T Consensus        48 ~--sl~~lp---~~~D~vvi~vp~~~~~~~l~~~~~~g~k~v~~~~   88 (116)
T d1y81a1          48 R--SVRELP---KDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQP   88 (116)
T ss_dssp             S--SGGGSC---TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             c--cchhcc---ccceEEEEEeCHHHHHHHHHHHHhcCCceEEecc
Confidence            1  344553   5789999999999999999999999999776643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.39  E-value=0.00092  Score=52.14  Aligned_cols=31  Identities=32%  Similarity=0.619  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||||+|.|.+|..+++.|.++. +++. +.++
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G-~~V~-~~d~   31 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAG-YSLV-VSDR   31 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CEEEEEehhHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            47999999999999999998865 5543 4565

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.30  E-value=0.0014  Score=50.21  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=26.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+|.+|..++-.|...+.+.-+.+.|.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   33 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEec
Confidence            589999999999999998887776644555565

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.29  E-value=0.003  Score=48.66  Aligned_cols=39  Identities=13%  Similarity=0.209  Sum_probs=29.3

Q ss_pred             CCCCCeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         1 m~~~m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |......||+|+|+|.+|..++-.|...+.+.-+.+.|.
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di   39 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDA   39 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEee
Confidence            444334799999999999999998888776644455665

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0064  Score=49.73  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCc-EEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDV-ELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~-elv~i~   37 (296)
                      +.||-|.|+ |++|+.+++.|.+++.+ ++.+++
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~   47 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIG   47 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEe
Confidence            368999999 99999999999988875 677765

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0059  Score=46.90  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=24.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||+|+|+|.+|..+...|.+.. .++..+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G-~~V~~~~   30 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG-HEVQGWL   30 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CceEEEE
Confidence            58999999999999999998754 4555553

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.13  E-value=0.0053  Score=47.02  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=26.8

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+ |.+|..++.+|..++-+.-+.+.|.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~   34 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccc
Confidence            58999998 9999999999999886644455554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.05  E-value=0.004  Score=47.50  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=26.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|++|..++-+|..++-.+++.+ |.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~-D~   33 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLL-DI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEE-CS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEE-ee
Confidence            489999999999999988887776686665 54

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.96  E-value=0.0029  Score=49.32  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=53.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||.|+|+|.+|+.+++.|..+. .+-+.|..+..+ ...++..      +   . +              +   ..   
T Consensus        25 ~~ilviGaG~~g~~v~~~L~~~g-~~~i~v~nRt~~ka~~l~~~------~---~-~--------------~---~~---   73 (159)
T d1gpja2          25 KTVLVVGAGEMGKTVAKSLVDRG-VRAVLVANRTYERAVELARD------L---G-G--------------E---AV---   73 (159)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHHH------H---T-C--------------E---EC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC-CcEEEEEcCcHHHHHHHHHh------h---h-c--------------c---cc---
Confidence            68999999999999999999875 544555555211 1222111      1   1 0              0   00   


Q ss_pred             CCCCCCcccCCCcEEEEccCCc---cCHHHHHHHHHC---CCCeEEeeCC
Q 022491           86 NPEEIPWAKTGAEYVVESTGVF---TDKDKAAAHLKG---GAKKVVISAP  129 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~---~~~~~~~~~l~~---G~k~vvid~~  129 (296)
                      +.+++.-...+.|+||.||+..   ...+..+..++.   +-..+++|.+
T Consensus        74 ~~~~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          74 RFDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             CGGGHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             cchhHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence            1111110024799999999874   556666666542   2234789875

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0087  Score=46.53  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++-.|...+-++-+.+.|.
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~   52 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDA   52 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            589999999999999999999887755555565

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.75  E-value=0.0091  Score=46.46  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ..||+|+|+|.+|..++-.|...+-+.-+.+.|.
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~   53 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDV   53 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3699999999999999999998887655556665

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.71  E-value=0.0068  Score=46.04  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=25.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+|.+|..++-.|..++-+.-+.+.|.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di   33 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDV   33 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            589999999999999988877765544445565

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.71  E-value=0.0051  Score=47.18  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=25.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|++|..++-.|..++-+.-+.+.|.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   34 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA   34 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEec
Confidence            589999999999999998877665433345565

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.65  E-value=0.0067  Score=47.36  Aligned_cols=31  Identities=16%  Similarity=0.168  Sum_probs=25.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .|++|+|+|.+|..++..|.++. .++. +.++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G-~~V~-~~~r   32 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKG-QSVL-AWDI   32 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCC-CEEE-EEEC
Confidence            58999999999999999999875 4544 4454

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.57  E-value=0.016  Score=43.85  Aligned_cols=82  Identities=22%  Similarity=0.207  Sum_probs=59.5

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|||+|+    +..|..+++.|.++. +++..||-. .           ++..                   |  ++++
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~-~-----------~~i~-------------------G--~~~~   65 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPK-Y-----------EEVL-------------------G--RKCY   65 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT-C-----------SEET-------------------T--EECB
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCc-c-----------cccC-------------------C--Cccc
Confidence            47999997    578999999999886 488887633 1           1111                   1  1122


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid  127 (296)
                      .  +..+++   ..+|+|+.++|.....+.++++++.|+|.+++-
T Consensus        66 ~--sl~dlp---~~iD~v~i~vp~~~~~~~~~e~~~~g~k~v~~~  105 (139)
T d2d59a1          66 P--SVLDIP---DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQ  105 (139)
T ss_dssp             S--SGGGCS---SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             c--cccccC---ccceEEEEEeCHHHHHHHHHHHHHhCCCEEEEe
Confidence            2  345553   578999999999999999999999999877663

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.53  E-value=0.0025  Score=49.18  Aligned_cols=31  Identities=29%  Similarity=0.506  Sum_probs=24.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||||+|+|.+|..+++.|.+.++ ++ .+.++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~-~i-~v~~r   31 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPH-EL-IISGS   31 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EE-EEECS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCC-eE-EEEcC
Confidence            589999999999999999987653 44 34444

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.35  E-value=0.018  Score=43.71  Aligned_cols=33  Identities=24%  Similarity=0.247  Sum_probs=27.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++-.|..++-+.-+.+.|.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~   34 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDV   34 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEec
Confidence            489999999999999999988877654555565

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.29  E-value=0.0091  Score=45.98  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=24.1

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCC
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRD   29 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p   29 (296)
                      |+++  +||.|+|| |.+|..++-+|...+
T Consensus         1 m~~p--~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           1 MKAP--VRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCC--EEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCC--CEEEEECCCCHHHHHHHHHHHhcc
Confidence            8887  79999999 999999999888765

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.22  E-value=0.013  Score=45.12  Aligned_cols=95  Identities=8%  Similarity=0.008  Sum_probs=56.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC-hhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS-TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~-~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      .||.|+|+|.+|+.+++.|.++. .+|+ |.++..+ .+.+      .+.++.             .     .+ .....
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g-~~V~-v~dr~~~~a~~l------~~~~~~-------------~-----~~-~~~~~   55 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSG-IKVT-VACRTLESAKKL------SAGVQH-------------S-----TP-ISLDV   55 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTT-CEEE-EEESCHHHHHHH------HTTCTT-------------E-----EE-EECCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEE-EEECChHHHHHH------Hhcccc-------------c-----cc-ccccc
Confidence            68999999999999999999886 4754 4454122 1211      121110             0     00 00000


Q ss_pred             CC-CCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeCCC
Q 022491           86 NP-EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (296)
Q Consensus        86 d~-~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~~~  130 (296)
                      +. ...+-.....|+++.++|..........+.+.++  .++|.+.
T Consensus        56 ~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~   99 (182)
T d1e5qa1          56 NDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKK--HVVTTSY   99 (182)
T ss_dssp             TCHHHHHHHHTTSSEEEECSCGGGHHHHHHHHHHHTC--EEECSSC
T ss_pred             cchhhhHhhhhccceeEeeccchhhhHHHHHHHhhcc--ceeeccc
Confidence            00 0000002467899999999887777777888887  6776543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.16  E-value=0.021  Score=43.42  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=26.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|+|+|.+|..++-.|...+-+.-+.+.|.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~   34 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDI   34 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            589999999999999988888776643445564

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.12  E-value=0.012  Score=46.86  Aligned_cols=90  Identities=16%  Similarity=0.103  Sum_probs=47.7

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~   85 (296)
                      |.||+|+|+|..|..++..|.+... + |.+.++  +.+.+. .+.-...++.+- ..+.      +  . +.+.+.  .
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~-~-V~l~~r--~~~~~~-~i~~~~~n~~yl-~~~~------l--~-~~i~~t--~   69 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCR-E-VCVWHM--NEEEVR-LVNEKRENVLFL-KGVQ------L--A-SNITFT--S   69 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEE-E-EEEECS--CHHHHH-HHHHHTBCTTTS-TTCB------C--C-TTEEEE--S
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCC-e-EEEEEe--cHHHHH-HHhhcccccccc-cccc------c--c-cccccc--h
Confidence            3689999999999999999886532 2 333333  322211 111111122211 0111      1  0 112222  2


Q ss_pred             CCCCCCcccCCCcEEEEccCCccCHHHHHH
Q 022491           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAA  115 (296)
Q Consensus        86 d~~~i~~~~~~~DvV~~at~~~~~~~~~~~  115 (296)
                      |+++.   ..+.|+||.|+|+...++..++
T Consensus        70 ~l~~a---~~~ad~iiiavPs~~~~~~~~~   96 (189)
T d1n1ea2          70 DVEKA---YNGAEIILFVIPTQFLRGFFEK   96 (189)
T ss_dssp             CHHHH---HTTCSCEEECSCHHHHHHHHHH
T ss_pred             hhhhc---cCCCCEEEEcCcHHHHHHHHHH
Confidence            33332   3578999999998766665544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.11  E-value=0.011  Score=44.99  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=26.6

Q ss_pred             EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||+|+|+ |.+|..++-+|...+-+.-..+.|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            8999996 9999999999998887755556664

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.02  Score=39.87  Aligned_cols=85  Identities=18%  Similarity=0.164  Sum_probs=52.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .||.|+|+|..|+.+++.|.++. .++... |...+.... ..+         . .     .. ..        .+.  .
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g-~~v~~~-D~~~~~~~~-~~~---------~-~-----~~-~~--------~~~--~   56 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARG-VTPRVM-DTRMTPPGL-DKL---------P-E-----AV-ER--------HTG--S   56 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT-CCCEEE-ESSSSCTTG-GGS---------C-T-----TS-CE--------EES--B
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEe-eCCcCchhH-HHH---------h-h-----cc-ce--------eec--c
Confidence            58999999999999999999885 444333 331222110 000         0 0     00 01        111  1


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k  122 (296)
                      ..+..  ..++|.|+-+.|-....+....+.++|++
T Consensus        57 ~~~~~--~~~~d~vi~SPGi~~~~~~~~~a~~~gi~   90 (93)
T d2jfga1          57 LNDEW--LMAADLIVASPGIALAHPSLSAAADAGIE   90 (93)
T ss_dssp             CCHHH--HHHCSEEEECTTSCTTSHHHHHHHHTTCE
T ss_pred             cchhh--hccCCEEEECCCCCCCCHHHHHHHHcCCC
Confidence            11111  24789999998888788888889999983

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.08  E-value=0.03  Score=44.57  Aligned_cols=30  Identities=17%  Similarity=0.278  Sum_probs=25.5

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCc-EEEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAV   36 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~-elv~i   36 (296)
                      .||-|.|+ |++|+.+++.|.++++. ++..+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~   34 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAP   34 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEE
Confidence            68999999 99999999999988874 55444

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.021  Score=43.91  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=62.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc-------eeEECCE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK-------TLLFGEK   77 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~-------~l~~~~~   77 (296)
                      .||+|.|. |-||...+..+.+||+ ++++++... .+.+.+....  ..-.|++-    -..+..       .+.-.+.
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~-~N~~~L~~q~--~~f~pk~v----~i~d~~~~~~l~~~l~~~~~   74 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG-KNVTRMVEQC--LEFSPRYA----VMDDEASAKLLKTMLQQQGS   74 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES-SCHHHHHHHH--HHHCCSEE----EESSHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec-CcHHHHHHHH--HHHhhccc----ccccHHHHHHHHHHhhhhcc
Confidence            68999999 9999999999999985 999999876 5654333221  11112111    000000       0000011


Q ss_pred             EEEEEec-CCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491           78 PVAVFGF-RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA  121 (296)
Q Consensus        78 ~i~~~~~-~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~  121 (296)
                      .+.++.. .+..++ -...++|+|+.+...+...+-.-.+++.|.
T Consensus        75 ~~~~~~g~~~l~~~-~~~~~~D~vi~AI~G~aGL~~t~~aik~gk  118 (151)
T d1q0qa2          75 RTEVLSGQQAACDM-AALEDVDQVMAAIVGAAGLLPTLAAIRAGK  118 (151)
T ss_dssp             CCEEEESHHHHHHH-HTCTTCCEEEECCSSGGGHHHHHHHHHTTC
T ss_pred             ccccccChHHHHHH-hcCCCCCEEEEecCcccHHHHHHHHHhcCC
Confidence            1222221 011111 012478999999998888888888888886

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.73  E-value=0.018  Score=44.21  Aligned_cols=33  Identities=33%  Similarity=0.431  Sum_probs=26.6

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +.||+|+|+|.+|..++-+|..++-.||+ +.|.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~-L~Di   35 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVV-LFDI   35 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEE-EECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEE-EEec
Confidence            36999999999999999888877755654 6665

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.55  E-value=0.021  Score=45.20  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|+||+++++++.... +++.+.
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g-~~v~~~   71 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALG-AQVRGF   71 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTT-CEEEEE
T ss_pred             ceEEEeccccccccceeeeeccc-cccccc
Confidence            58999999999999999998764 666554

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.50  E-value=0.012  Score=44.94  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=26.6

Q ss_pred             EEEEEec-CHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         8 ~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ||+|+|+ |.+|..++-+|...+-++-+.+.|.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi   34 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI   34 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEec
Confidence            7999998 9999999999998887655555565

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.31  E-value=0.033  Score=43.50  Aligned_cols=34  Identities=24%  Similarity=0.329  Sum_probs=24.6

Q ss_pred             CCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        95 ~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      .++|+||+|+|...+.+.+-.+++.|-+.+++..
T Consensus        99 ~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2          99 RGADFILEATGDSRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCceEEeecCCchhHHHHHHHHhcCCCEEEEEee
Confidence            3699999999987777777677776665444543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.02  E-value=0.15  Score=36.41  Aligned_cols=92  Identities=17%  Similarity=0.082  Sum_probs=53.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      .||.|+|+|.+|..-++.|.+.. .++..+... .+.+. ..+.  +.       +.+.      +        .....+
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~g-a~v~v~~~~-~~~~~-~~~~--~~-------~~i~------~--------~~~~~~   66 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAG-ARLTVNALT-FIPQF-TVWA--NE-------GMLT------L--------VEGPFD   66 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-BEEEEEESS-CCHHH-HHHH--TT-------TSCE------E--------EESSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CeEEEEecc-CChHH-HHHH--hc-------CCce------e--------eccCCC
Confidence            68999999999999999999875 665555432 33321 1111  11       1110      0        011112


Q ss_pred             CCCCCcccCCCcEEEEccCCc-cCHHHHHHHHHCCCCeEEeeC
Q 022491           87 PEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~-~~~~~~~~~l~~G~k~vvid~  128 (296)
                      .+++    .+.++|+-||+.. ...+....+.+.|+-..++|.
T Consensus        67 ~~dl----~~~~lv~~at~d~~~n~~i~~~a~~~~ilVNv~D~  105 (113)
T d1pjqa1          67 ETLL----DSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDA  105 (113)
T ss_dssp             GGGG----TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             HHHh----CCCcEEeecCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence            2233    5789999998874 445566677778874444543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=93.96  E-value=0.03  Score=42.86  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=64.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCC-cEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCc---ee--EECCEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEK---TL--LFGEKPV   79 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~-~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~---~l--~~~~~~i   79 (296)
                      .||+|.|+ |-||...+..+.++|+ ++++++... .+.+.+....  ....|++-    ...+..   .+  .+.+..+
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~-~N~~~L~~q~--~ef~Pk~v----~i~d~~~~~~l~~~~~~~~~   75 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN-RNVKDLADAA--KRTNAKRA----VIADPSLYNDLKEALAGSSV   75 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES-SCHHHHHHHH--HHTTCSEE----EESCGGGHHHHHHHTTTCSS
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC-CCHHHHHHHH--Hhhccccc----eeccHHHHHHHHHHhhhccc
Confidence            79999999 9999999999999985 999999876 5654433321  11112111    000000   00  0011112


Q ss_pred             EEEecCC-CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           80 AVFGFRN-PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        80 ~~~~~~d-~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      .++...+ ..++  ...++|+|+.|...+...+-.-.+++.|. ++.+
T Consensus        76 ~v~~g~~~l~~~--~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk-~iaL  120 (150)
T d1r0ka2          76 EAAAGADALVEA--AMMGADWTMAAIIGCAGLKATLAAIRKGK-TVAL  120 (150)
T ss_dssp             EEEESHHHHHHH--HTSCCSEEEECCCSGGGHHHHHHHHHTTS-EEEE
T ss_pred             ccccCccchhee--cccccceeeeecCchhHHHHHHHHHhcCC-EEEE
Confidence            2222111 1111  12468999999888887777778888885 3444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.58  E-value=0.12  Score=40.14  Aligned_cols=33  Identities=21%  Similarity=0.217  Sum_probs=23.7

Q ss_pred             CCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491           95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        95 ~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid  127 (296)
                      .++|+||+|+|.....+.+-.+++.|-+.+++.
T Consensus        95 ~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          95 KGVDRVIMAGGGSETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             SCEEEEEECSSCTTHHHHHHHHEEEEEEEEECC
T ss_pred             cCcceEEEccCCHHHHHHHHHHHhcCCEEEEEe
Confidence            469999999998777677666766665444443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.05  Score=41.29  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             eEEEEEec-CHHHHHHHHHHH-cCCCcEEEEEecC
Q 022491            7 IKIGINGF-GRIGRLVARVAL-QRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~-~~p~~elv~i~~~   39 (296)
                      |||+|+|+ |.+|..++-+|. +.+...-+.+.|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~   35 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecc
Confidence            58999997 999999987764 5566654555565

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.51  E-value=0.036  Score=42.44  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=20.6

Q ss_pred             CCCCeeEEEEEec-CHHHHHHHHHHHc
Q 022491            2 AGDKKIKIGINGF-GRIGRLVARVALQ   27 (296)
Q Consensus         2 ~~~m~i~vgI~G~-G~iG~~l~r~l~~   27 (296)
                      |++  +||+|+|| |.+|..++-.|.+
T Consensus         1 s~p--~KV~IiGA~G~VG~~la~~l~~   25 (154)
T d5mdha1           1 SEP--IRVLVTGAAGQIAYSLLYSIGN   25 (154)
T ss_dssp             CCC--EEEEESSTTSHHHHTTHHHHHT
T ss_pred             CCc--eEEEEECCCCHHHHHHHHHHHH
Confidence            566  79999998 9999999888764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.51  E-value=0.037  Score=40.91  Aligned_cols=29  Identities=28%  Similarity=0.518  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |||-|+|+|++|+.+++.|.+.. .+++.|
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g-~~v~vi   29 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKG-HDIVLI   29 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CCccee
Confidence            58999999999999999998765 666666

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.45  E-value=0.036  Score=42.53  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=26.5

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      +.||+|+|+|.+|..++.+|...+-.|++ +.|.
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~-L~D~   39 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVV-LYDV   39 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEE-EECS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEE-EEEe
Confidence            47999999999999998887777656866 5564

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.028  Score=43.37  Aligned_cols=87  Identities=17%  Similarity=0.281  Sum_probs=48.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      -+|.|+|+|-+|...+.++.... .+++.+... .+...++..+  ..              +  .        ++...+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~-~~~~~~a~~l--Ga--------------d--~--------~i~~~~   83 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTS-EAKREAAKAL--GA--------------D--E--------VVNSRN   83 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESS-GGGHHHHHHH--TC--------------S--E--------EEETTC
T ss_pred             CEEEEeccchHHHHHHHHhhccc-ccchhhccc-hhHHHHHhcc--CC--------------c--E--------EEECch
Confidence            36999999999999988887664 677755443 2221222111  10              0  1        111111


Q ss_pred             CCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCC
Q 022491           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA  121 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~  121 (296)
                      .+.......++|++|+|++...+.+..-..+..|-
T Consensus        84 ~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G  118 (168)
T d1uufa2          84 ADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDG  118 (168)
T ss_dssp             HHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEE
T ss_pred             hhHHHHhcCCCceeeeeeecchhHHHHHHHHhcCC
Confidence            11111113579999999998776666555555444

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=93.29  E-value=0.071  Score=39.88  Aligned_cols=85  Identities=12%  Similarity=0.065  Sum_probs=57.7

Q ss_pred             eEEEEEec----CHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEE
Q 022491            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (296)
Q Consensus         7 i~vgI~G~----G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~   82 (296)
                      .+|||+|+    ++.|..+++-|.++. +.+..++-. ...         +..+                   |  .+.+
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g-~~~~~v~~~-~~~---------~~i~-------------------g--~~~~   61 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPR-FQG---------EELF-------------------G--EEAV   61 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGG-GTT---------SEET-------------------T--EECB
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCC-CCceEEEec-ccc---------ceee-------------------c--eecc
Confidence            47999998    789999999998876 455444421 110         1111                   1  1112


Q ss_pred             ecCCCCCCCcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEeeC
Q 022491           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (296)
Q Consensus        83 ~~~d~~~i~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid~  128 (296)
                      .  ++.+++   ..+|+|+.|+|.....+.++++.+.|+|.+++..
T Consensus        62 ~--~l~~i~---~~iD~v~v~~p~~~v~~~v~~~~~~g~k~i~~q~  102 (136)
T d1iuka_          62 A--SLLDLK---EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQS  102 (136)
T ss_dssp             S--SGGGCC---SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECT
T ss_pred             c--chhhcc---CCCceEEEeccHHHHHHHHHHHHhhCCCeEEEec
Confidence            1  344553   4689999999998888899999999998777743

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.079  Score=40.75  Aligned_cols=95  Identities=21%  Similarity=0.244  Sum_probs=52.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      -+|.|+|+|.+|...+.++.....-+++.+ ++..+--.++.      .++    ..        ..+      .....+
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~-d~~~~rl~~a~------~~G----a~--------~~~------~~~~~~   82 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVT-DLSATRLSKAK------EIG----AD--------LVL------QISKES   82 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEE-ESCHHHHHHHH------HTT----CS--------EEE------ECSSCC
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEec-cCCHHHHHHHH------HhC----Cc--------ccc------cccccc
Confidence            369999999999999988887764355554 44111111111      111    00        000      000001


Q ss_pred             CCCC------CcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEee
Q 022491           87 PEEI------PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (296)
Q Consensus        87 ~~~i------~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvid  127 (296)
                      +.+.      .+ -.++|+||+|+|.....+.+-.+++.|-+.+++.
T Consensus        83 ~~~~~~~~~~~~-g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          83 PQEIARKVEGQL-GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             HHHHHHHHHHHH-TSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECS
T ss_pred             cccccccccccC-CCCceEEEeccCCchhHHHHHHHhcCCCEEEEEe
Confidence            1000      00 1378999999999877777777777776544443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.82  E-value=0.025  Score=44.03  Aligned_cols=32  Identities=16%  Similarity=0.069  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      -+|.|+|+|.+|...+.++.... .+.+.+.+.
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~   61 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDI   61 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHT-CSEEEEEES
T ss_pred             CEEEEeCCCHHHhhhhhcccccc-cceeeeecc
Confidence            36999999999999998887765 344555554

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.78  E-value=0.05  Score=43.31  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=24.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|.||+++++.+..-. +++.+.
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg-~~v~~~   78 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFG-FNVLFY   78 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             ceEEEeccccccccceeeeeccc-cceeec
Confidence            58999999999999999998763 787665

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.74  E-value=0.051  Score=43.45  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=25.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|||+|+|.||+++++.+..-. +++.+. ++
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg-~~V~~~-d~   74 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFG-AKVITY-DI   74 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CeEEEecccccchhHHHhHhhhc-cccccc-Cc
Confidence            68999999999999999998654 777665 44

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.73  E-value=0.05  Score=43.53  Aligned_cols=29  Identities=21%  Similarity=0.428  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|+||+++++.+..-. +++.+.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg-~~v~~~   74 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFG-AKVIAY   74 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             eeeeeeecccccccccccccccc-eeeecc
Confidence            58999999999999999998764 777654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.58  E-value=0.13  Score=40.11  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=19.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHc
Q 022491            7 IKIGINGF-GRIGRLVARVALQ   27 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~   27 (296)
                      +||.|+|| |.+|..++-.|.+
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~   46 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLAS   46 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHc
Confidence            89999999 9999999988765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.36  E-value=0.093  Score=40.78  Aligned_cols=32  Identities=13%  Similarity=0.060  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      -+|.|+|+|-+|...+..+.... .+.+.+.++
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~   61 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDI   61 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CSEEEEECS
T ss_pred             CEEEEECCChHHHHHHHHHHHhC-Cceeeeecc
Confidence            36999999999999998888775 444455555

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.21  E-value=0.15  Score=38.94  Aligned_cols=30  Identities=20%  Similarity=0.176  Sum_probs=24.7

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+|.+|...+.++.... .+++++.
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~   57 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYG-AFVVCTA   57 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEEcccccchhhHhhHhhhc-ccccccc
Confidence            36999999999999998887776 6877764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.82  E-value=0.06  Score=42.86  Aligned_cols=31  Identities=32%  Similarity=0.547  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|+||+|..++-.+.+.. .++.++ |.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g-~~V~g~-D~   31 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARG-HEVIGV-DV   31 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEECCCHhHHHHHHHHHhCC-CcEEEE-eC
Confidence            57999999999999988888764 566554 44

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.096  Score=41.43  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=26.0

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |..||||+|+|.+|+.++.++..+. .+++ +.|+
T Consensus         3 ~IkkvaViGaG~mG~~iA~~~a~~G-~~V~-l~D~   35 (192)
T d1f0ya2           3 IVKHVTVIGGGLMGAGIAQVAAATG-HTVV-LVDQ   35 (192)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             eeEEEEEECcCHHHHHHHHHHHhCC-CcEE-EEEC
Confidence            4468999999999999999888775 5544 4455

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.61  Score=38.90  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=26.1

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +.||-|.|+ |++|+.+++.|.+.. .+++++.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d   32 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDG-HEVTVVD   32 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence            368999999 999999999998764 6777763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.34  E-value=0.071  Score=41.31  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||||+|.|.+|..+++.|.++. .++ .+.|+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G-~~V-~~~dr   32 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKG-FKV-AVFNR   32 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCC-CeE-EEEEC
Confidence            58999999999999999999875 554 45565

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.26  E-value=0.1  Score=40.86  Aligned_cols=31  Identities=19%  Similarity=0.160  Sum_probs=26.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~   37 (296)
                      |||.|+|+|++|.++++.|.+ .++.++..+.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~   32 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYE   32 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEe
Confidence            589999999999999998876 5778877664

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.53  E-value=0.12  Score=40.65  Aligned_cols=30  Identities=27%  Similarity=0.387  Sum_probs=23.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      |||+|+|.||+|.-++-.+ .. ..+++++ |.
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~-g~~V~g~-Di   30 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SL-QNEVTIV-DI   30 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TT-TSEEEEE-CS
T ss_pred             CEEEEECCChhHHHHHHHH-HC-CCcEEEE-EC
Confidence            5899999999999887555 44 5787766 54

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.50  E-value=0.14  Score=40.55  Aligned_cols=29  Identities=34%  Similarity=0.566  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++||+|+|+||+++++.+.... +++.+.
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg-~~v~~~   76 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFD-MDIDYF   76 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             cceEEeecccchHHHHHHHHhhc-cccccc
Confidence            68999999999999999988764 676554

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=90.18  E-value=0.59  Score=38.46  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCC---hh--hhhhccccc-----ccCCCCcCcceeeeCCceeEECC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS---TD--YMTYMFKYD-----SVHGQWKHNELKVKDEKTLLFGE   76 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~---~~--~~a~~l~~~-----s~~~~~~~~~v~~~~~~~l~~~~   76 (296)
                      .||+|=|||.+|+.+++.|.+.. ..+++|+|....   ++  +...++.+.     ....... . .....      + 
T Consensus        37 ~~v~IQGfGnVG~~~a~~L~e~G-akvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~-~-~~~~~------~-  106 (255)
T d1bgva1          37 KTVALAGFGNVAWGAAKKLAELG-AKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQ-D-YADKF------G-  106 (255)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHT-CEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTH-H-HHHHH------T-
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchh-h-hhhhc------C-
Confidence            68999999999999999999875 899999875211   00  000011100     0000000 0 00000      0 


Q ss_pred             EEEEEEecCCCCCCCcccCCCcEEEEccCC-ccCHHHHHHHHHCCCCeEEe
Q 022491           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        77 ~~i~~~~~~d~~~i~~~~~~~DvV~~at~~-~~~~~~~~~~l~~G~k~vvi  126 (296)
                        ...+   +++++ | ..++|++|-|.-. ..+.+.+..+.+.||| +|+
T Consensus       107 --~~~~---~~~~~-~-~~~~DiliPcA~~~~I~~~~a~~l~a~~ck-~I~  149 (255)
T d1bgva1         107 --VQFF---PGEKP-W-GQKVDIIMPCATQNDVDLEQAKKIVANNVK-YYI  149 (255)
T ss_dssp             --CEEE---ETCCG-G-GSCCSEEECCSCTTCBCHHHHHHHHHTTCC-EEE
T ss_pred             --ceee---chhhc-c-cccccEEeeccccccccHHHHHhhhhcCce-EEe
Confidence              0112   34454 6 4689999987654 5567788888888996 455

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.17  E-value=0.14  Score=40.27  Aligned_cols=29  Identities=28%  Similarity=0.403  Sum_probs=24.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|+||+++++.+... .+++.+.
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~f-g~~v~~~   73 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESL-GMYVYFY   73 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             eEEEEeecccchhhhhhhcccc-cceEeec
Confidence            5899999999999999988766 3776555

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=89.63  E-value=0.11  Score=38.08  Aligned_cols=28  Identities=25%  Similarity=0.471  Sum_probs=23.0

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |+.|+|+|++|+.+++.|.++. .+++.|
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g-~~vvvi   29 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMG-HEVLAV   29 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCC-CeEEEe
Confidence            6899999999999999998764 455555

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.41  E-value=0.16  Score=41.35  Aligned_cols=30  Identities=30%  Similarity=0.585  Sum_probs=26.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||-|.|+ |++|+.|++.|.++. .+++++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g-~~Vi~~~   32 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKN-VEVIPTD   32 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSS-EEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-CEEEEee
Confidence            57999999 999999999998864 6887774

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=89.24  E-value=0.17  Score=39.68  Aligned_cols=29  Identities=34%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|||+|+|+||+++++.+.... +++.+.
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg-~~v~~~   73 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFD-VHLHYT   73 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGT-CEEEEE
T ss_pred             cceeeccccccchhhhhhhhccC-ceEEEE
Confidence            68999999999999999998653 565554

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=89.12  E-value=0.2  Score=37.57  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=26.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHc-CCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~-~p~~elv~i~   37 (296)
                      .||.|+|+|++|.+++..|.+ .++++++-|.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie   34 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIE   34 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEE
Confidence            489999999999999998876 4678887764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.97  E-value=0.67  Score=35.22  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=24.2

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +|.|+|+|-+|...+.++.....-+++++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~   60 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVD   60 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeec
Confidence            699999988999998888887656666664

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.94  E-value=0.22  Score=37.83  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=22.8

Q ss_pred             eEEEEEe-cCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGING-FGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G-~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |||+|+| +|.+|+.+++.|.+.. .+++..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G-~~V~l~   30 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLG-HEIVVG   30 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEE
Confidence            4799995 5999999999999875 454433

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.64  E-value=0.17  Score=36.72  Aligned_cols=28  Identities=18%  Similarity=0.042  Sum_probs=23.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC-CcEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRD-DVELV   34 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p-~~elv   34 (296)
                      -|+.|+|+|+||.|++..+.+.. ++.|+
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii   49 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVM   49 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEE
Confidence            58999999999999999998865 35444

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=88.51  E-value=0.19  Score=42.49  Aligned_cols=31  Identities=26%  Similarity=0.456  Sum_probs=27.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |||-|.|+ |++|+.+++.|.+++..+|.++.
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld   32 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLD   32 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            47999999 99999999999887777888774

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.52  E-value=0.31  Score=35.23  Aligned_cols=30  Identities=23%  Similarity=0.224  Sum_probs=24.1

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ..|+.|+|+|++|.|++..|.+.. .++.-+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG-~~Vtii   52 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLG-SKVTVV   52 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHhhC-cceeEE
Confidence            368999999999999999998764 454444

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.47  E-value=0.32  Score=34.69  Aligned_cols=29  Identities=14%  Similarity=0.115  Sum_probs=23.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .|+.|+|+|++|.|++..+.+.. .++.-+
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G-~~Vtlv   51 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFG-TKVTIL   51 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CeEEEECCCccceeeeeeecccc-cEEEEE
Confidence            68999999999999999998875 554444

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.42  E-value=0.21  Score=37.54  Aligned_cols=27  Identities=30%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ||.|+|+|++|-|+++.|.+.  .++.-+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~--~~Vtvv   28 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQT--YEVTVI   28 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT--SEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHcC--CCEEEE
Confidence            799999999999999998753  344333

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=87.28  E-value=0.36  Score=34.62  Aligned_cols=30  Identities=27%  Similarity=0.275  Sum_probs=23.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .||.|+|+|++|-|++..|.+.. .++.-+.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g-~~Vtlv~   52 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLG-IDSYIFA   52 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CEEEEECCchHHHHHHHHHHhcc-ccceeee
Confidence            58999999999999999988654 5544443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.19  E-value=0.23  Score=38.41  Aligned_cols=95  Identities=19%  Similarity=0.333  Sum_probs=55.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d   86 (296)
                      -||.|+|+|.+|.+-++...... .+ |.+.|.  +.+.+-   +.++.++.+.    .      .        ...  +
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lG-A~-V~~~D~--~~~~l~---~l~~~~~~~~----~------~--------~~~--~   85 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLG-AQ-VQIFDI--NVERLS---YLETLFGSRV----E------L--------LYS--N   85 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CE-EEEEES--CHHHHH---HHHHHHGGGS----E------E--------EEC--C
T ss_pred             cEEEEECCChHHHHHHHHHhhCC-CE-EEEEeC--cHHHHH---HHHHhhcccc----e------e--------ehh--h
Confidence            58999999999999999998876 44 344454  232211   1233333211    0      0        000  1


Q ss_pred             CCCCCcccCCCcEEEEcc-------CCccCHHHHHHHHHCCCCeEEeeCCCC
Q 022491           87 PEEIPWAKTGAEYVVEST-------GVFTDKDKAAAHLKGGAKKVVISAPSK  131 (296)
Q Consensus        87 ~~~i~~~~~~~DvV~~at-------~~~~~~~~~~~~l~~G~k~vvid~~~~  131 (296)
                      .+.+.-...++|+||-|.       |.-.+++.++. .+.|.  |+||.+.+
T Consensus        86 ~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~-Mk~GS--VIVDvaid  134 (168)
T d1pjca1          86 SAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQ-MRTGS--VIVDVAVD  134 (168)
T ss_dssp             HHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTT-SCTTC--EEEETTCT
T ss_pred             hhhHHHhhccCcEEEEeeecCCcccCeeecHHHHhh-cCCCc--EEEEeecC
Confidence            111111125789999864       45556555543 46788  99998876

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.95  E-value=0.18  Score=39.45  Aligned_cols=31  Identities=16%  Similarity=0.271  Sum_probs=24.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||||+|+|.+|+.++..+.++. ++++ +.|+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G-~~V~-l~D~   35 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKG-TPIL-MKDI   35 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEEC
Confidence            47999999999999998888775 5544 4455

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.84  E-value=0.36  Score=34.66  Aligned_cols=30  Identities=27%  Similarity=0.349  Sum_probs=24.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .|+.|+|+|+||.|++..+.+.. .++.-+.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G-~~Vtiv~   52 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLG-AEVTVLE   52 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CeEEEECCChHHHHHHHHHHHcC-CceEEEE
Confidence            68999999999999999998764 5555554

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.75  E-value=2.2  Score=35.69  Aligned_cols=30  Identities=13%  Similarity=0.172  Sum_probs=25.7

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .+|-|-|+ |++|..+++.|.++. .++.++.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~~v   42 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHG-YKVRGTA   42 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEe
Confidence            58999999 999999999998885 6777654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.53  E-value=0.37  Score=37.60  Aligned_cols=29  Identities=38%  Similarity=0.558  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++||+|+|.||+++++.+..-. +++.+.
T Consensus        45 k~vgiiG~G~IG~~va~~~~~fg-~~v~~~   73 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAFG-AYVVAY   73 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             eeeeeccccchhHHHHHHhhhcc-ceEEee
Confidence            68999999999999999988754 777665

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.50  E-value=0.59  Score=35.38  Aligned_cols=93  Identities=16%  Similarity=0.114  Sum_probs=50.5

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEecCCCChhhhhhcccccccCCCCcCcceeeeCCceeEECCEEEEEEecCCC
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~~~~~~~~a~~l~~~s~~~~~~~~~v~~~~~~~l~~~~~~i~~~~~~d~   87 (296)
                      +|.|+|+|-+|...+.++.....-.++++ +.+..-..++..+  ...                -.++       ...+.
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~-~~~~~k~~~ak~l--Ga~----------------~~i~-------~~~~~   84 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGV-DINKDKFARAKEF--GAT----------------ECIN-------PQDFS   84 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEE-CSCGGGHHHHHHH--TCS----------------EEEC-------GGGCS
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEE-cccHHHHHHHHHh--CCc----------------EEEe-------CCchh
Confidence            69999998889988888877754444444 4412222222211  110                0000       00000


Q ss_pred             CCC-----CcccCCCcEEEEccCCccCHHHHHHHHHCCCCeEEe
Q 022491           88 EEI-----PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (296)
Q Consensus        88 ~~i-----~~~~~~~DvV~~at~~~~~~~~~~~~l~~G~k~vvi  126 (296)
                      +..     .....++|+||+|+|.....+.+..++..|...+++
T Consensus        85 ~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          85 KPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             SCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred             hHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEE
Confidence            100     001247999999999877666666666666544444

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=86.23  E-value=0.26  Score=37.91  Aligned_cols=31  Identities=10%  Similarity=0.128  Sum_probs=25.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      -+|||+|.|.+|..+++.|.++. +++. +.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G-~~V~-v~dr   33 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHG-FVVC-AFNR   33 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCC-CeEE-EEcC
Confidence            47999999999999999999875 4554 4455

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=0.29  Score=41.37  Aligned_cols=31  Identities=23%  Similarity=0.175  Sum_probs=25.5

Q ss_pred             CeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |..||-|-|+ |++|..|++.|.+.. -+++++
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g-~~V~~l   32 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAG-YLPVVI   32 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCc-CEEEEE
Confidence            3468999999 999999999998765 466666

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=85.83  E-value=0.21  Score=41.00  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=26.6

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |.||-|.|+ |++|+.+++.|.+++ .++.++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~   34 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLF   34 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence            468999999 999999999998876 6777664

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.55  E-value=0.4  Score=40.78  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=26.7

Q ss_pred             CCCCCeeEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         1 m~~~m~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      ||+-  |||-|.|+ |++|..+++.|.+.. -+++++
T Consensus        12 ~~~n--MKILVTGgsGfIGs~lv~~L~~~g-~~V~~~   45 (363)
T d2c5aa1          12 PSEN--LKISITGAGGFIASHIARRLKHEG-HYVIAS   45 (363)
T ss_dssp             TTSC--CEEEEETTTSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCCC--CEEEEECCCCHHHHHHHHHHHHCc-CEEEEE
Confidence            6643  68999999 999999999998865 466655

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.48  E-value=1.2  Score=34.12  Aligned_cols=30  Identities=13%  Similarity=0.244  Sum_probs=25.3

Q ss_pred             EEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      .|.|.|+|-+|...+..+....--+|+++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd   61 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGID   61 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEec
Confidence            599999999999999998887766777774

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.44  E-value=0.23  Score=40.74  Aligned_cols=31  Identities=23%  Similarity=0.375  Sum_probs=25.1

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |+.+|.|+|+|.+|..++..|.++. ++++-+
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~~G-~~v~vl   31 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHKAG-IDNVIL   31 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHHT-CCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CCEEEE
Confidence            6678999999999999999998775 554444

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=85.39  E-value=0.39  Score=36.64  Aligned_cols=35  Identities=17%  Similarity=0.032  Sum_probs=28.6

Q ss_pred             CeeEEEEEecCHHHHHHHHHHHcC-CCcEEEEEecC
Q 022491            5 KKIKIGINGFGRIGRLVARVALQR-DDVELVAVNDP   39 (296)
Q Consensus         5 m~i~vgI~G~G~iG~~l~r~l~~~-p~~elv~i~~~   39 (296)
                      |+-+|.|+|+|.+|-+++..|.+. .++.++-+.+.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            567899999999999999998764 46788777654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.36  E-value=0.34  Score=40.23  Aligned_cols=28  Identities=43%  Similarity=0.598  Sum_probs=24.6

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEE
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVEL   33 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~el   33 (296)
                      |.||-|.|+ |++|+.|++.|.+.++..+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi   30 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVEL   30 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEE
Confidence            469999999 9999999999999876554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.19  E-value=0.58  Score=39.40  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCC-cEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDD-VELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~-~elv~i   36 (296)
                      .||+|||+|..|...++.|.+... .+++.+
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vf   35 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLF   35 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEE
Confidence            789999999999999988876543 455433

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.13  E-value=0.78  Score=35.04  Aligned_cols=32  Identities=13%  Similarity=0.180  Sum_probs=24.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      -+|.|+|+|-+|...+..+..+.--+++++ |+
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~-d~   60 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGV-GT   60 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEE-CS
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeecc-CC
Confidence            369999999999999998887764455544 44

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=85.09  E-value=0.37  Score=38.16  Aligned_cols=31  Identities=16%  Similarity=0.187  Sum_probs=24.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||.|||+|.+|...+..|.++. .++. |.++
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G-~~V~-vier   37 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKG-YSVH-ILAR   37 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EEES
T ss_pred             CcEEEECccHHHHHHHHHHHHCC-CCEE-EEeC
Confidence            68999999999999999998874 3443 4443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.74  E-value=0.52  Score=33.95  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=23.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||.|+|+|++|.|++..|.+.. .++.-|
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g-~~Vtli   59 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAG-KKVTVI   59 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECChHHHHHHHHHhhccc-eEEEEE
Confidence            58999999999999999998764 454444

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.71  E-value=0.52  Score=34.02  Aligned_cols=29  Identities=17%  Similarity=0.031  Sum_probs=23.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .|+.|+|+|++|-|++..+.+.. .++.-+
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G-~~Vtlv   51 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALG-SKTSLM   51 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHhcCC-cEEEEE
Confidence            58999999999999999988764 454444

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.68  E-value=0.54  Score=33.46  Aligned_cols=29  Identities=17%  Similarity=0.164  Sum_probs=23.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||.|+|+|++|.|++..|.+.. .++.-+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G-~~Vtlv   50 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLG-AKTHLF   50 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECCChhhHHHHHHhhccc-cEEEEE
Confidence            58999999999999999998765 454333

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=84.66  E-value=0.53  Score=33.88  Aligned_cols=29  Identities=31%  Similarity=0.264  Sum_probs=23.9

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .|+.|+|+|++|-|++..|.+.. .++.-|
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g-~~Vtli   59 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAG-VHVSLV   59 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CeEEEECcchhHHHHHHHhhccc-ceEEEE
Confidence            68999999999999999998764 555444

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.25  E-value=0.59  Score=33.53  Aligned_cols=29  Identities=21%  Similarity=0.049  Sum_probs=23.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .++.|+|+|++|-|++..|.+.. .++.-|
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g-~~Vtlv   61 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAG-YHVKLI   61 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHhhccc-ceEEEE
Confidence            47999999999999999998764 444433

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=84.15  E-value=0.29  Score=39.78  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=26.2

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      |.||-|.|+ |++|+.+++.|.+.. .++.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~   34 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLV   34 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEE
Confidence            478999999 999999999998774 5777764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=83.93  E-value=0.58  Score=34.21  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=24.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||.|+|+|++|-|++..|.+.. .++.-|
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g-~~Vtvi   64 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKAN-MHVTLL   64 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECCchHHHHHHHHHHhhC-cceeee
Confidence            68999999999999999998764 555444

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.88  E-value=0.25  Score=37.61  Aligned_cols=31  Identities=16%  Similarity=0.374  Sum_probs=24.3

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+ |-+|...+.++..+...+++.+.
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~   60 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD   60 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             CEEEEEeccccceeeeeecccccccccccccc
Confidence            36999998 99999999988877655655543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=83.68  E-value=0.42  Score=38.29  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=22.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELV   34 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv   34 (296)
                      |||+|||+|..|...+..|.++. .+++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G-~~V~   27 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRG-TDAV   27 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTT-CCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CCEE
Confidence            47999999999999999998875 4543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.51  E-value=0.47  Score=40.00  Aligned_cols=29  Identities=21%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGF-GRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      |||-|.|+ |++|+.|++.|.+.. .+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~   30 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIIL   30 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc-CEEEEE
Confidence            47999999 999999999998875 677666

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.12  E-value=0.5  Score=36.71  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=25.7

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCC-CcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRD-DVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~   37 (296)
                      .+|-|.|+ |.+|+.+++.|.+.. ++.+..+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~   36 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   36 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEc
Confidence            68999999 999999999998764 47766654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.93  E-value=4.8  Score=33.41  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=29.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|=|||.+|..+++.|.+.. ..+++|.|.
T Consensus        37 ktvaIqGfGnVG~~~A~~L~e~G-akvv~vsD~   68 (293)
T d1hwxa1          37 KTFAVQGFGNVGLHSMRYLHRFG-AKCVAVGES   68 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEEET
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcc
Confidence            58999999999999999999875 999999875

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.91  E-value=0.29  Score=36.87  Aligned_cols=22  Identities=27%  Similarity=0.378  Sum_probs=20.3

Q ss_pred             EEEEEecCHHHHHHHHHHHcCC
Q 022491            8 KIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         8 ~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      |||++|.|.+|..+++.|.++.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g   23 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRF   23 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCC
Confidence            7999999999999999998765

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=82.84  E-value=0.7  Score=32.77  Aligned_cols=29  Identities=7%  Similarity=-0.090  Sum_probs=23.1

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .+|.|+|.|++|-|++..|.... .++.-+
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g-~~vt~i   51 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATG-RRTVML   51 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcc-hhheEe
Confidence            58999999999999999988764 444434

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=82.76  E-value=0.52  Score=34.19  Aligned_cols=29  Identities=31%  Similarity=0.145  Sum_probs=23.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      -++.|+|+|+||.|++..+.... .++.-+
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G-~~Vtiv   55 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLG-SRLDVV   55 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHT-CEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHhhcCC-CEEEEE
Confidence            58999999999999999888754 555444

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=82.50  E-value=0.47  Score=40.09  Aligned_cols=31  Identities=32%  Similarity=0.317  Sum_probs=26.5

Q ss_pred             eeEEEEEec-CHHHHHHHHHHHcCCCcEEEEEe
Q 022491            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         6 ~i~vgI~G~-G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      +.+|.|.|+ |++|+.+++.|.+++ .++.++.
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~   34 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQV   34 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCC-CeEEEEE
Confidence            468999999 999999999999875 5677775

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.67  E-value=0.35  Score=36.86  Aligned_cols=30  Identities=17%  Similarity=0.368  Sum_probs=22.3

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      -+|.|+|+|.+|...+.++.....-.++.+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~   63 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIAL   63 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccc
Confidence            368999999999999888876553444443

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.24  E-value=0.43  Score=37.55  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             eEEEEEecCHHHHHHHHHHHcC
Q 022491            7 IKIGINGFGRIGRLVARVALQR   28 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~   28 (296)
                      |||+|||+|.+|...+..|.+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~   22 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHER   22 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHC
Confidence            5899999999999999988764

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=81.20  E-value=0.54  Score=40.44  Aligned_cols=34  Identities=18%  Similarity=0.171  Sum_probs=28.4

Q ss_pred             eeEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         6 ~i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      ..+++|+|+|..++..++++...-.++-+.|.++
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r  161 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDT  161 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECS
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEec
Confidence            3679999999999999998876544888888877

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.99  E-value=0.69  Score=32.72  Aligned_cols=27  Identities=15%  Similarity=0.107  Sum_probs=22.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELV   34 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv   34 (296)
                      .|+.|+|+|++|-|++..|.+.. .++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g-~~Vt   48 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLG-AQVS   48 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHT-CEEE
T ss_pred             CeEEEECCCHHHHHHHHHHhhcc-cceE
Confidence            68999999999999999998764 4443

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.89  E-value=0.66  Score=35.32  Aligned_cols=23  Identities=22%  Similarity=0.163  Sum_probs=21.2

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCC
Q 022491            7 IKIGINGFGRIGRLVARVALQRD   29 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p   29 (296)
                      .||+|||+|.+|.+.++.|.++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G   27 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLG   27 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT
T ss_pred             CEEEEECChHHHHHHHHHHHHCC
Confidence            69999999999999999998765

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=80.74  E-value=0.98  Score=36.72  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=29.4

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .||+|-|||.+|..+++.|.++. ..+++|.|.
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~G-akvv~vsD~   63 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMG-AKVIAVSDI   63 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEeecc
Confidence            68999999999999999999885 899999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=80.64  E-value=2.7  Score=31.42  Aligned_cols=31  Identities=16%  Similarity=0.264  Sum_probs=23.0

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEe
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~   37 (296)
                      -+|.|+|+|-+|...+..+.....-+++++.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~   60 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVD   60 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeec
Confidence            3699999988998888777766545565553

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=80.54  E-value=0.52  Score=33.97  Aligned_cols=29  Identities=28%  Similarity=0.232  Sum_probs=23.8

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .|+.|+|+|++|.|++..+.+.. .++.-+
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G-~~Vtvi   54 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIG-SEVTVV   54 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHT-CEEEEE
T ss_pred             CeEEEEccchHHHHHHHHHHhcC-CeEEEE
Confidence            58999999999999999998765 454444

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=80.45  E-value=0.57  Score=39.51  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=26.2

Q ss_pred             eEEEEEec-CHHHHHHHHHHHcCC-CcEEEEEe
Q 022491            7 IKIGINGF-GRIGRLVARVALQRD-DVELVAVN   37 (296)
Q Consensus         7 i~vgI~G~-G~iG~~l~r~l~~~p-~~elv~i~   37 (296)
                      |||-|.|+ |++|..|++.|.++. ++.++.+.
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            78999999 999999999997654 57877764

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.12  E-value=0.94  Score=34.56  Aligned_cols=31  Identities=13%  Similarity=0.287  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEEecC
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i~~~   39 (296)
                      .+|+|+|+|++|+.+++.+.... ++++ +.+.
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G-~~V~-v~e~   55 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFG-ARVI-ITEI   55 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CEEEEeccccccHHHHHHHHhCC-CeeE-eeec
Confidence            58999999999999999999875 4443 3344

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=80.04  E-value=0.84  Score=36.30  Aligned_cols=29  Identities=17%  Similarity=0.093  Sum_probs=24.5

Q ss_pred             eEEEEEecCHHHHHHHHHHHcCCCcEEEEE
Q 022491            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (296)
Q Consensus         7 i~vgI~G~G~iG~~l~r~l~~~p~~elv~i   36 (296)
                      .||.|||+|..|..++..|.+.. ++++-+
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G-~~v~v~   33 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAG-VDVDVY   33 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHCC-CCEEEE
Confidence            68999999999999999988774 676544