Citrus Sinensis ID: 022498

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLGHSCKRC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHccHHHHHHccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHcccccccccccEEEEEccccccEEEEEccccEEEcccccccEEEccccccccccccEEEEEEEEEEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEEccccccEEEEEEEEEEcccccccEEEEEEEEEEEcccHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHcccccccccccccccHHHHHHHHccccEcccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEEEccccccEEEEEEccccccccccccccccccEEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEEccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mganvsgiiadsngdelsslrprlsdmpESCVALVLMHLDPPEICKLARLNrafrgassadfiwesklpsnyQFIVDKVlgsssktnmvDYLSKKHlyarlcspspfdggnkemwldkntgglcvsISSKALaitgiddrrywthisteesRFQSVAYLQQIWWFEVdgefefqfpvgtysLFFRlqlgkpskrlgrrvckfehvhgwdikpvrfllttsdgqhavsqcflenpghwvhyRVADfvvedpsestkiKFSLTQidcthtkgglcvdsvlicpssfeksllghsckrc
Flexible Loop (DISEMBL)
mganvsgiiadsngdeLSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADfiwesklpsnYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRVCKFehvhgwdikpvRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSsfeksllghsckrc
Low Complexity Region (SEG)
MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLGHSCKRC
Disordered region (IsUnstruct)
*****************************SCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFE***********
Disordered Region (DISOPRED)
*************************DMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVD*******************LYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLL***********CFLENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSF************
Disordered Region (DISEMBL)
MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEK**********
Disordered Region (DISPRO)
**********************RLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLG********DYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLGHSCK*C
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLGHSCKRC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q9LEX0	290	F-box protein PP2-A13 OS=	yes	no	0.966	0.986	0.664	1e-111
Q9LN77	291	F-box protein PP2-A12 OS=	no	no	0.891	0.907	0.618	3e-96
Q9CAN4	289	F-box protein PP2-A11 OS=	no	no	0.895	0.916	0.612	7e-91
Q9LF92	300	F-box protein PP2-A15 OS=	no	no	0.922	0.91	0.537	4e-87
Q9FJ80	291	F-box protein PP2-A14 OS=	no	no	0.949	0.965	0.517	5e-87
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.5	0.440	0.327	3e-19
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.520	0.504	0.310	9e-19
Q9FLU7	251	Putative F-box protein PP	no	no	0.459	0.541	0.308	1e-18
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.452	0.492	0.340	1e-18
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.506	0.468	0.337	2e-18

>sp|Q9LEX0|P2A13_ARATH F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1

 Score =  402 bits (1034), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/292 (66%), Positives = 226/292 (77%), Gaps = 6/292 (2%)

Query: 1   MGANVSGIIAD-SNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASS 59
           MGAN+SG   +    D++ S + RL D+PE+CVAL++  LDPPEIC+LARLNR FR ASS
Sbjct: 1   MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASS 60

Query: 60  ADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKN 119
           ADFIWESKLP+NY+ I  KV    + T ++    KK LYA+L  P+ FD G KE+W+DKN
Sbjct: 61  ADFIWESKLPANYRVIAHKVFDEITLTKLI----KKDLYAKLSQPNLFDDGTKELWIDKN 116

Query: 120 TGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGT 179
           TG LC+SISSKAL ITGIDDRRYW+HI T+ESRFQS AY+QQIWWFEV GEFE QFP GT
Sbjct: 117 TGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGT 176

Query: 180 YSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFL-ENPGHWV 238
           YSLFFR+QLGK SKRLGRR+C  EH+HGWDIKPVRF L TSD Q AVS C+L  NPG W 
Sbjct: 177 YSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNPGSWS 236

Query: 239 HYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLG 290
           HY V DF V +P  ST IKFS+TQIDCTHTKGGLC+DSVLI P    K ++G
Sbjct: 237 HYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKECAKEVIG 288

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN77|P2A12_ARATH F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1

 Score =  352 bits (902), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 167/270 (61%), Positives = 207/270 (76%), Gaps = 6/270 (2%)

Query: 20  LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKV 79
           L+P L D+PE+CVA+++ +LDP EIC+ ++LNRAFRGAS AD +WESKLP NY+ +++K+
Sbjct: 24  LKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKI 83

Query: 80  LGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDD 139
           LG        + L K+HLYA L   + FD   K++W+DK T G+C+SIS+K L+ITGIDD
Sbjct: 84  LG-----GFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDD 138

Query: 140 RRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRV 199
           RRYW+HI T+ESRF SVAYLQQIWWFEVDGE +F FPVGTYS+FFRLQLG+  K  GRRV
Sbjct: 139 RRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRV 198

Query: 200 CKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVV-EDPSESTKIKF 258
           C  E VHGWDIKPVRF L T DGQ++ SQC L   G+W+HY   D VV E    STKIKF
Sbjct: 199 CNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRSSTKIKF 258

Query: 259 SLTQIDCTHTKGGLCVDSVLICPSSFEKSL 288
           S+TQIDCTHTKGGL +DSV++ PSS +  L
Sbjct: 259 SMTQIDCTHTKGGLSLDSVVVYPSSCKDQL 288

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN4|P2A11_ARATH F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1

 Score =  333 bits (855), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 166/271 (61%), Positives = 208/271 (76%), Gaps = 6/271 (2%)

Query: 20  LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKV 79
           L+P L D+PESCVAL+L +LDP EIC+ ++LN AF GAS ADF+WESKLP +Y+ I++K+
Sbjct: 22  LQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKI 81

Query: 80  LGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDD 139
           LGS       D L K+ ++  L   + FD GNK+ W+DK TGGLC+  S+K L+ITGIDD
Sbjct: 82  LGS-----FPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDD 136

Query: 140 RRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKRLGRRV 199
           RRYW+HI +++SRF SVAY+QQIWWF+VDGE +F FP GTYS++FRLQLGKP KR G +V
Sbjct: 137 RRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGKRFGWKV 196

Query: 200 CKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVV-EDPSESTKIKF 258
              E VHGW+IKPVRF L+T DGQH+ SQC L   G+W HY   DFVV +  S STKIKF
Sbjct: 197 VDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTEAGNWSHYHAGDFVVGKSKSSSTKIKF 256

Query: 259 SLTQIDCTHTKGGLCVDSVLICPSSFEKSLL 289
           S+TQIDCTHTKGGLCVDSV++ PSS +  L+
Sbjct: 257 SMTQIDCTHTKGGLCVDSVVVYPSSCKDRLM 287

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF92|P2A15_ARATH F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1

 Score =  321 bits (822), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/292 (53%), Positives = 205/292 (70%), Gaps = 19/292 (6%)

Query: 1   MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
           MG+++S +   +NG    ++ P L D+PESCVA V M+L PPEIC LA LNR+FRGA+S+
Sbjct: 1   MGSSLSNLNDGTNG---LAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASS 57

Query: 61  DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNT 120
           D +WE KLP NYQ ++D +      +     LSKK ++A L  P PFD  NKE+W+D+ T
Sbjct: 58  DSVWEKKLPENYQDLLDLLPPERYHS-----LSKKDIFAVLSRPIPFDDDNKEVWIDRVT 112

Query: 121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTY 180
           G +C++IS++ ++ITGI+DRRYW  I TEESRF  VAYLQQIWWFEVDG   F  P G Y
Sbjct: 113 GRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVY 172

Query: 181 SLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLEN------- 233
           SL FR+ LG+ +KRLGRRVC FE  HGWD+KPVRF L+TSDGQ A  + +L++       
Sbjct: 173 SLSFRIHLGRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEAL 232

Query: 234 ----PGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICP 281
                G+W+ YRV +F+V     ST+I++S+ QIDCTH+KGGLCVDSV I P
Sbjct: 233 GKHKRGYWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINP 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ80|P2A14_ARATH F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1

 Score =  321 bits (822), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 148/286 (51%), Positives = 201/286 (70%), Gaps = 5/286 (1%)

Query: 1   MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
           MGA  S I+     +  +     L D+PE+C+  + M+++PPEIC LAR+N++F  AS +
Sbjct: 1   MGAASSSIV---RSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRS 57

Query: 61  DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYL--SKKHLYARLCSPSPFDGGNKEMWLDK 118
           D +WE KLPSNY+F+V ++L    +  + D L   KK +YARLC P+ FD G KE WLDK
Sbjct: 58  DAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDK 117

Query: 119 NTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVG 178
            +G + ++IS KA+ ITGIDDRRYW HIS++ESRF S+ YL+QIWW E  G+  F+F  G
Sbjct: 118 RSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPG 177

Query: 179 TYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWV 238
            YSL F++QLGKP ++ GR+ C  + VHGWDIKPVRF L+TSDGQ A+S+  L+  G WV
Sbjct: 178 KYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDESGRWV 237

Query: 239 HYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSF 284
           ++   DFVVE+ +    +KFS+ QIDCTHTKGGLC+D V+ICP  +
Sbjct: 238 YHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEY 283

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 84/159 (52%), Gaps = 11/159 (6%)

Query: 15  DELSSLRP-RLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQ 73
           DE+S  R  R   +PE C++ V+ H  P + C +A ++++ + A+ +D +WE  LPS Y 
Sbjct: 22  DEISVTRASRFDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYS 81

Query: 74  FIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPF-DGGNKEMWLDKNTGGLCVSISSKAL 132
            +V             ++LSKK ++  L   S   + G K  W++K +G  C  +S+  L
Sbjct: 82  SLV---------LQSANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMEL 132

Query: 133 AITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEF 171
            I   D   YW  I+  ES+F+ VA L+ + WFEV G+ 
Sbjct: 133 TIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKI 171

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)

Query: 24  LSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSS 83
           L D+PE CV++++    P + C LA +++ F  A  +D +WE  +P  Y+ ++       
Sbjct: 36  LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLI------- 88

Query: 84  SKTNMVDYLSKKHLYARLCSPSPF-DGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRY 142
           S++    +LSKK LY  LC  S   D G K +W++K     C+ IS+  LAI   +  + 
Sbjct: 89  SQSRAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQS 148

Query: 143 WTHISTEESRFQSVAYLQQIWWFEVDGEFEFQF--PVGTYSLFF 184
           W  I   ++RF++VA L ++  FE+ G    +   P   YS + 
Sbjct: 149 WRWIPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYI 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 10/146 (6%)

Query: 26  DMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSK 85
           D+PE C+A ++    P + C+++ +++  R A+ ++  WE  LPS+Y+  +D        
Sbjct: 5   DLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYID-------- 56

Query: 86  TNMVDYLSKKHLYARLC-SPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWT 144
            N +   S K L+ R C SP   + G    W++K +G  C  +S++ L I  +D   +W 
Sbjct: 57  -NSLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWI 115

Query: 145 HISTEESRFQSVAYLQQIWWFEVDGE 170
            +S  +SRF+ VA L  + WFE+ G+
Sbjct: 116 WVSIPDSRFEEVAGLLMVCWFEIRGK 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 10/144 (6%)

Query: 27  MPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKT 86
            PE C++ ++   +P + C  A +++ F     +D IWE  LP++Y+ ++       S+ 
Sbjct: 17  FPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI-----PPSRV 71

Query: 87  NMVDYLSKKHLYARLCS-PSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTH 145
               + SKK LY  LC+ P  FD   K +WL+K +G  C+ +S+  L+I   D+ +YW  
Sbjct: 72  ----FSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQW 127

Query: 146 ISTEESRFQSVAYLQQIWWFEVDG 169
           I   ESRF+ VA L+ + WFE+ G
Sbjct: 128 IPIPESRFEKVAKLRDVCWFEIRG 151

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 10/160 (6%)

Query: 12  SNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSN 71
           S G+ +S        +PE C++ ++    P + C  A +++ F  A S+D +W+  LP  
Sbjct: 49  SGGEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPE 108

Query: 72  YQFIVDKVLGSSSKTNMVDYLSKKHLYARLC-SPSPFDGGNKEMWLDKNTGGLCVSISSK 130
           Y+ +V       S++ +  + SKK LY  LC +P   + G K  WL+K +G  C+ +SSK
Sbjct: 109 YESLV-------SRSRV--FASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSK 159

Query: 131 ALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGE 170
            L IT      YW  IS  ESRF  +A L  + WFE+ G+
Sbjct: 160 ELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGK 199

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
225453740	289	PREDICTED: F-box protein PP2-A13 [Vitis	0.966	0.989	0.709	1e-120
224127502	294	f-box family protein [Populus trichocarp	0.942	0.948	0.729	1e-120
225426781	283	PREDICTED: F-box protein PP2-A12 [Vitis	0.945	0.989	0.677	1e-112
297742595	309	unnamed protein product [Vitis vinifera]	0.966	0.925	0.667	1e-112
356505068	281	PREDICTED: F-box protein PP2-A13-like [G	0.949	1.0	0.684	1e-112
356520469	281	PREDICTED: F-box protein PP2-A13-like [G	0.949	1.0	0.684	1e-112
30695337	290	F-box protein PP2-A13 [Arabidopsis thali	0.966	0.986	0.664	1e-110
297817416	290	ATPP2-A13 [Arabidopsis lyrata subsp. lyr	0.966	0.986	0.660	1e-109
42572749	291	F-box protein PP2-A13 [Arabidopsis thali	0.966	0.982	0.662	1e-108
255539541	286	ATPP2-A13, putative [Ricinus communis] g	0.956	0.989	0.645	1e-107

>gi|225453740|ref|XP_002269833.1| PREDICTED: F-box protein PP2-A13 [Vitis vinifera] gi|296089069|emb|CBI38772.3| unnamed protein product [Vitis vinifera]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/293 (70%), Positives = 240/293 (81%), Gaps = 7/293 (2%)

Query: 1   MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
           MGAN+SGI AD++GD     RP+L D+PESC+ALVLM+LDPPEICKLARLNRAFRGAS+A
Sbjct: 1   MGANISGIDADTDGDNNPPSRPKLGDIPESCLALVLMNLDPPEICKLARLNRAFRGASAA 60

Query: 61  DFIWESKLPSNYQFIVD--KVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDK 118
           DFIWE+KLP NY+ ++   K+    S       L KK +YARLC P+PFDGG KE+WLDK
Sbjct: 61  DFIWEAKLPPNYRSLIQELKIFDEFSMN-----LRKKGIYARLCRPNPFDGGTKEVWLDK 115

Query: 119 NTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVG 178
            TGG+C SISSKAL ITGIDDRRYW HI TEESRFQ+VAYLQQ WWFEVDGEFEF+FP G
Sbjct: 116 RTGGVCFSISSKALTITGIDDRRYWNHIPTEESRFQTVAYLQQTWWFEVDGEFEFRFPPG 175

Query: 179 TYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWV 238
           TYSLFFRL LG+ SKRLGRRVC  EH+HGWDIKPV+F LTTS+GQHAVS+C+LENPG+W+
Sbjct: 176 TYSLFFRLHLGRASKRLGRRVCNPEHIHGWDIKPVKFQLTTSEGQHAVSKCYLENPGNWI 235

Query: 239 HYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLGH 291
           H+ V DFVVE    + K+KFS TQIDCTHTKGG+CVDSVLICP S  K +  H
Sbjct: 236 HHHVGDFVVEQGDTAMKVKFSATQIDCTHTKGGVCVDSVLICPWSIGKEVRQH 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127502|ref|XP_002320090.1| f-box family protein [Populus trichocarpa] gi|222860863|gb|EEE98405.1| f-box family protein [Populus trichocarpa]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/285 (72%), Positives = 237/285 (83%), Gaps = 6/285 (2%)

Query: 1   MGANVS-GIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASS 59
           MGAN+S   + D+NG+  SS +PRL D+PESC+ALVLMHLDPP+ICKLARLNRAF GASS
Sbjct: 1   MGANLSCATLCDTNGEGPSS-KPRLGDIPESCLALVLMHLDPPDICKLARLNRAFHGASS 59

Query: 60  ADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKN 119
           ADFIWESKLPSNY+FI +KVL   +    V  L KK +YAR+C P+PFDGG KE+WLDK 
Sbjct: 60  ADFIWESKLPSNYKFICEKVLDEKT----VVGLEKKDVYARMCRPNPFDGGTKEVWLDKK 115

Query: 120 TGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGT 179
           TGG C SISSK LAITGIDDRRYW HISTEESRF +VAYLQQIWWFE+DGEFEF+FP G 
Sbjct: 116 TGGACFSISSKGLAITGIDDRRYWNHISTEESRFHTVAYLQQIWWFEIDGEFEFEFPKGM 175

Query: 180 YSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVH 239
           YSLFFRLQLG+ SKR+GRRVC  EH+HGWDIKPVRF LTTSDGQ A S+CFL+ PG+WV+
Sbjct: 176 YSLFFRLQLGRSSKRMGRRVCNSEHIHGWDIKPVRFQLTTSDGQRAASKCFLDTPGNWVY 235

Query: 240 YRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSF 284
           Y   DFVV+ PSE  KIKFS+TQIDCTHTKGGLCVD+  + PSS 
Sbjct: 236 YHAGDFVVDRPSELMKIKFSMTQIDCTHTKGGLCVDAAFVYPSSI 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426781|ref|XP_002282844.1| PREDICTED: F-box protein PP2-A12 [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/288 (67%), Positives = 226/288 (78%), Gaps = 8/288 (2%)

Query: 1   MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
           MG  VS +  ++ G      RPRL D+PE CVALVL +LDPPEICKLA+LNRAFRGAS A
Sbjct: 1   MGTGVSLLACENEG---CPSRPRLGDLPEDCVALVLSYLDPPEICKLAKLNRAFRGASRA 57

Query: 61  DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNT 120
           D +WE KLPSNY  +++KV       +  + L KK +YARLC P+PFDGG K+ WLDK T
Sbjct: 58  DLVWEPKLPSNYCLVIEKVF-----KDFPENLCKKEIYARLCQPNPFDGGTKKAWLDKRT 112

Query: 121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTY 180
           GG+C+SISSK LAITGIDDRRYWT+I TEESRF +VAY+QQIWW EVDGE +F FP GTY
Sbjct: 113 GGVCLSISSKGLAITGIDDRRYWTYIPTEESRFNTVAYVQQIWWLEVDGEVDFPFPAGTY 172

Query: 181 SLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHY 240
           S+FFRLQLG+ SKRLGRR+C  EHVHGWDIKPVRF L TSDGQHA SQCFL+ PG W+ Y
Sbjct: 173 SIFFRLQLGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHATSQCFLDEPGRWIQY 232

Query: 241 RVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSL 288
             ADFVV++ +  TKIKFS+TQIDCTHTKGGLCVDSVLI P  F + L
Sbjct: 233 HAADFVVDNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYPREFRERL 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742595|emb|CBI34744.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/295 (66%), Positives = 230/295 (77%), Gaps = 9/295 (3%)

Query: 1   MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
           MG  VS +  ++ G      RPRL D+PE CVALVL +LDPPEICKLA+LNRAFRGAS A
Sbjct: 1   MGTGVSLLACENEG---CPSRPRLGDLPEDCVALVLSYLDPPEICKLAKLNRAFRGASRA 57

Query: 61  DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNT 120
           D +WE KLPSNY  +++KV       +  + L KK +YARLC P+PFDGG K+ WLDK T
Sbjct: 58  DLVWEPKLPSNYCLVIEKVF-----KDFPENLCKKEIYARLCQPNPFDGGTKKAWLDKRT 112

Query: 121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTY 180
           GG+C+SISSK LAITGIDDRRYWT+I TEESRF +VAY+QQIWW EVDGE +F FP GTY
Sbjct: 113 GGVCLSISSKGLAITGIDDRRYWTYIPTEESRFNTVAYVQQIWWLEVDGEVDFPFPAGTY 172

Query: 181 SLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHY 240
           S+FFRLQLG+ SKRLGRR+C  EHVHGWDIKPVRF L TSDGQHA SQCFL+ PG W+ Y
Sbjct: 173 SIFFRLQLGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHATSQCFLDEPGRWIQY 232

Query: 241 RVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSF-EKSLLGHSCK 294
             ADFVV++ +  TKIKFS+TQIDCTHTKGGLCVDSVLI P  F E+ ++  S K
Sbjct: 233 HAADFVVDNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYPREFREREIINVSSK 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505068|ref|XP_003521314.1| PREDICTED: F-box protein PP2-A13-like [Glycine max]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/288 (68%), Positives = 232/288 (80%), Gaps = 7/288 (2%)

Query: 1   MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
           MGA+ S  + D +G   + LRPRL D+PESCVALVLM+LDPP+ICKLARLNRAFR ASSA
Sbjct: 1   MGASFSSCVCDGDG---TPLRPRLGDIPESCVALVLMYLDPPDICKLARLNRAFRDASSA 57

Query: 61  DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNT 120
           DFIWESKLP NY+FIV+K L   S    V+ L K+ +YARLC P+ FD G KE+WLDK T
Sbjct: 58  DFIWESKLPLNYKFIVEKALKDVS----VEQLGKRDIYARLCRPNSFDNGTKEIWLDKRT 113

Query: 121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTY 180
           GG+C++ISS+AL ITGIDDRRYW+ ISTEESRF +VAYLQQIWW EV+ + +FQFP G Y
Sbjct: 114 GGVCLAISSQALRITGIDDRRYWSRISTEESRFHTVAYLQQIWWLEVEDDVDFQFPPGKY 173

Query: 181 SLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHY 240
           S+FFRLQLG+ SKRLGRRVCK + +HGWDIKPV+F LTTSDGQ AVSQ  L+NPGHWV Y
Sbjct: 174 SVFFRLQLGRSSKRLGRRVCKTDDIHGWDIKPVKFQLTTSDGQRAVSQSHLDNPGHWVLY 233

Query: 241 RVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSL 288
              +FV + P++  KIKFSLTQIDCTHTKGGLCVDSV IC S  +K +
Sbjct: 234 HAGNFVSKSPNDLMKIKFSLTQIDCTHTKGGLCVDSVFICNSDLKKEV 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520469|ref|XP_003528884.1| PREDICTED: F-box protein PP2-A13-like [Glycine max]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 197/288 (68%), Positives = 235/288 (81%), Gaps = 7/288 (2%)

Query: 1   MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
           MGA+ S  + D  GD   S RPRL D+PESCVALVLM+LDPP+ICKLARLNRAFR AS A
Sbjct: 1   MGASFSSCVCD--GDATPS-RPRLGDIPESCVALVLMYLDPPDICKLARLNRAFRDASVA 57

Query: 61  DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNT 120
           DFIWESKLPSNY+FIV+K L  +S    V+ L K+ +YARLC P+ FD G KE+WLDK T
Sbjct: 58  DFIWESKLPSNYKFIVEKALKDAS----VEELGKRDIYARLCRPNSFDNGTKEIWLDKRT 113

Query: 121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTY 180
           GG+C++ISS+AL ITGIDDRRYW+ ISTEESRF +VAYLQQIWW EV+G+ +FQFP G+Y
Sbjct: 114 GGVCLAISSQALRITGIDDRRYWSRISTEESRFHTVAYLQQIWWLEVEGDVDFQFPPGSY 173

Query: 181 SLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHY 240
           ++FFRLQLG+ SKRLGRRVCK + VHGWDIKPV+F LTTSDGQHAVSQ  L+NPG+W+ Y
Sbjct: 174 NVFFRLQLGRSSKRLGRRVCKTDDVHGWDIKPVKFQLTTSDGQHAVSQSHLDNPGNWILY 233

Query: 241 RVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSL 288
              +FV ++P++  KIK SLTQIDCTHTKGGLCVDSV IC S  +K +
Sbjct: 234 HAGNFVSKNPNDLMKIKISLTQIDCTHTKGGLCVDSVFICNSDVKKEV 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695337|ref|NP_567108.2| F-box protein PP2-A13 [Arabidopsis thaliana] gi|75263830|sp|Q9LEX0.1|P2A13_ARATH RecName: Full=F-box protein PP2-A13; AltName: Full=Protein PHLOEM PROTEIN 2-LIKE A13; Short=AtPP2-A13; AltName: Full=SKP1-interacting partner 9 gi|8388622|emb|CAB94142.1| putative protein [Arabidopsis thaliana] gi|24030237|gb|AAN41295.1| unknown protein [Arabidopsis thaliana] gi|332646626|gb|AEE80147.1| F-box protein PP2-A13 [Arabidopsis thaliana]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/292 (66%), Positives = 226/292 (77%), Gaps = 6/292 (2%)

Query: 1   MGANVSGIIAD-SNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASS 59
           MGAN+SG   +    D++ S + RL D+PE+CVAL++  LDPPEIC+LARLNR FR ASS
Sbjct: 1   MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASS 60

Query: 60  ADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKN 119
           ADFIWESKLP+NY+ I  KV    + T ++    KK LYA+L  P+ FD G KE+W+DKN
Sbjct: 61  ADFIWESKLPANYRVIAHKVFDEITLTKLI----KKDLYAKLSQPNLFDDGTKELWIDKN 116

Query: 120 TGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGT 179
           TG LC+SISSKAL ITGIDDRRYW+HI T+ESRFQS AY+QQIWWFEV GEFE QFP GT
Sbjct: 117 TGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGT 176

Query: 180 YSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFL-ENPGHWV 238
           YSLFFR+QLGK SKRLGRR+C  EH+HGWDIKPVRF L TSD Q AVS C+L  NPG W 
Sbjct: 177 YSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNPGSWS 236

Query: 239 HYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLG 290
           HY V DF V +P  ST IKFS+TQIDCTHTKGGLC+DSVLI P    K ++G
Sbjct: 237 HYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKECAKEVIG 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817416|ref|XP_002876591.1| ATPP2-A13 [Arabidopsis lyrata subsp. lyrata] gi|297322429|gb|EFH52850.1| ATPP2-A13 [Arabidopsis lyrata subsp. lyrata]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/292 (66%), Positives = 230/292 (78%), Gaps = 6/292 (2%)

Query: 1   MGANVSGIIADSNGD-ELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASS 59
           MGAN+SG + + + D ++ + +P L D+PE+CVAL+++ LDPPEIC+LARLNR FR ASS
Sbjct: 1   MGANISGGLTEFDRDGDVYARKPGLVDLPENCVALIMIRLDPPEICRLARLNRMFRRASS 60

Query: 60  ADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKN 119
           ADFIWESKLPSNY+ I  KV    +   ++    KK LYA+L  P+ F+ G KE+W+DKN
Sbjct: 61  ADFIWESKLPSNYRVIAHKVFDEITLRKLI----KKDLYAKLSRPNLFEDGTKELWIDKN 116

Query: 120 TGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGT 179
           TG LC+SISSKAL ITGIDDRRYW+HI T+ESRFQSVAY+QQIWWFEV GEFE QFP GT
Sbjct: 117 TGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSVAYVQQIWWFEVGGEFEIQFPSGT 176

Query: 180 YSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFL-ENPGHWV 238
           YSLFFR+QLGK SKRLGRR+C  EH+HGWDIKPVRF L TSD Q AVS C+L +NPG W 
Sbjct: 177 YSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSFCYLNKNPGSWS 236

Query: 239 HYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLG 290
           HY V DF V +P  ST IKFS+TQIDCTHTKGGLC+DSVLI P    K ++G
Sbjct: 237 HYHVGDFKVTNPDISTGIKFSMTQIDCTHTKGGLCIDSVLILPKDCAKEVIG 288

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572749|ref|NP_974470.1| F-box protein PP2-A13 [Arabidopsis thaliana] gi|332646625|gb|AEE80146.1| F-box protein PP2-A13 [Arabidopsis thaliana]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/293 (66%), Positives = 226/293 (77%), Gaps = 7/293 (2%)

Query: 1   MGANVSGIIAD-SNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASS 59
           MGAN+SG   +    D++ S + RL D+PE+CVAL++  LDPPEIC+LARLNR FR ASS
Sbjct: 1   MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASS 60

Query: 60  ADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNK-EMWLDK 118
           ADFIWESKLP+NY+ I  KV    + T ++    KK LYA+L  P+ FD G K E+W+DK
Sbjct: 61  ADFIWESKLPANYRVIAHKVFDEITLTKLI----KKDLYAKLSQPNLFDDGTKQELWIDK 116

Query: 119 NTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVG 178
           NTG LC+SISSKAL ITGIDDRRYW+HI T+ESRFQS AY+QQIWWFEV GEFE QFP G
Sbjct: 117 NTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSG 176

Query: 179 TYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFL-ENPGHW 237
           TYSLFFR+QLGK SKRLGRR+C  EH+HGWDIKPVRF L TSD Q AVS C+L  NPG W
Sbjct: 177 TYSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNPGSW 236

Query: 238 VHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLG 290
            HY V DF V +P  ST IKFS+TQIDCTHTKGGLC+DSVLI P    K ++G
Sbjct: 237 SHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKECAKEVIG 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539541|ref|XP_002510835.1| ATPP2-A13, putative [Ricinus communis] gi|223549950|gb|EEF51437.1| ATPP2-A13, putative [Ricinus communis]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/288 (64%), Positives = 224/288 (77%), Gaps = 5/288 (1%)

Query: 1   MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
           MGA  S   +DSNGD  SSL P L D+PESC++ +LM LDPPEICKLA LNR F GAS A
Sbjct: 1   MGAGFSSFASDSNGDP-SSLGPTLGDVPESCISSILMCLDPPEICKLASLNRTFHGASLA 59

Query: 61  DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNT 120
           D +WE+KLP NY+F+V KVL  S        LSKK +YARLC P+ FDGG K++WLDK++
Sbjct: 60  DLVWETKLPPNYKFLVMKVLQESP----AQVLSKKQIYARLCQPNCFDGGTKQVWLDKSS 115

Query: 121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTY 180
           G +C+S+S KAL ITGIDDRRYW HIS+EESRFQ++AYLQQIWWFEV GE EF+FP   Y
Sbjct: 116 GKICLSVSYKALRITGIDDRRYWNHISSEESRFQTIAYLQQIWWFEVVGELEFEFPPDKY 175

Query: 181 SLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHY 240
           SLFFRLQLGK SKR GRRV   + VHGW+IKPV+F L+ S+GQ A S+ +L   G+WVHY
Sbjct: 176 SLFFRLQLGKASKRFGRRVSNIDQVHGWNIKPVQFQLSASNGQQASSEYYLHKQGNWVHY 235

Query: 241 RVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSL 288
           RV DFVVE+P+   KIKFS+TQIDCTHTKGG+C+D+V ICPS+  + L
Sbjct: 236 RVGDFVVENPNTHVKIKFSMTQIDCTHTKGGVCLDAVFICPSALREKL 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2100997	291	PP2-A13 "phloem protein 2-A13"	0.966	0.982	0.662	1.8e-103
TAIR|locus:2195042	291	PP2-A12 "phloem protein 2-A12"	0.908	0.924	0.608	1.3e-91
TAIR|locus:2015238	289	PP2-A11 "phloem protein 2-A11"	0.912	0.934	0.606	2.7e-91
TAIR|locus:2173078	291	PP2-A14 "phloem protein 2-A14"	0.949	0.965	0.517	2.8e-82
TAIR|locus:2085236	300	PP2-A15 "phloem protein 2-A15"	0.922	0.91	0.537	8.5e-81
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.506	0.468	0.343	9.1e-25
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.550	0.485	0.335	5.5e-22
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.476	0.487	0.321	6e-22
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.820	0.893	0.276	8e-21
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.581	0.554	0.322	2.7e-20

TAIR|locus:2100997 PP2-A13 "phloem protein 2-A13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 194/293 (66%), Positives = 226/293 (77%)

Query:     1 MGANVSGIIAD-SNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASS 59
             MGAN+SG   +    D++ S + RL D+PE+CVAL++  LDPPEIC+LARLNR FR ASS
Sbjct:     1 MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASS 60

Query:    60 ADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNK-EMWLDK 118
             ADFIWESKLP+NY+ I  KV    + T ++    KK LYA+L  P+ FD G K E+W+DK
Sbjct:    61 ADFIWESKLPANYRVIAHKVFDEITLTKLI----KKDLYAKLSQPNLFDDGTKQELWIDK 116

Query:   119 NTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVG 178
             NTG LC+SISSKAL ITGIDDRRYW+HI T+ESRFQS AY+QQIWWFEV GEFE QFP G
Sbjct:   117 NTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSG 176

Query:   179 TYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLEN-PGHW 237
             TYSLFFR+QLGK SKRLGRR+C  EH+HGWDIKPVRF L TSD Q AVS C+L N PG W
Sbjct:   177 TYSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLNNNPGSW 236

Query:   238 VHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLLG 290
              HY V DF V +P  ST IKFS+TQIDCTHTKGGLC+DSVLI P    K ++G
Sbjct:   237 SHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKECAKEVIG 289

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2195042 PP2-A12 "phloem protein 2-A12" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 168/276 (60%), Positives = 211/276 (76%)

Query:    14 GDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQ 73
             GD  + L+P L D+PE+CVA+++ +LDP EIC+ ++LNRAFRGAS AD +WESKLP NY+
Sbjct:    19 GDR-NILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYR 77

Query:    74 FIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALA 133
              +++K+LG   +      L K+HLYA L   + FD   K++W+DK T G+C+SIS+K L+
Sbjct:    78 DVLEKILGGFPEN-----LQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLS 132

Query:   134 ITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSK 193
             ITGIDDRRYW+HI T+ESRF SVAYLQQIWWFEVDGE +F FPVGTYS+FFRLQLG+  K
Sbjct:   133 ITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGK 192

Query:   194 RLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSES 253
               GRRVC  E VHGWDIKPVRF L T DGQ++ SQC L   G+W+HY   D VV + + S
Sbjct:   193 WFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTERGNWIHYHAGDVVVRESNRS 252

Query:   254 -TKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSL 288
              TKIKFS+TQIDCTHTKGGL +DSV++ PSS +  L
Sbjct:   253 STKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQL 288

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2015238 PP2-A11 "phloem protein 2-A11" [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 168/277 (60%), Positives = 210/277 (75%)

Query:    14 GDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQ 73
             GD    L+P L D+PESCVAL+L +LDP EIC+ ++LN AF GAS ADF+WESKLP +Y+
Sbjct:    17 GDR-DLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYK 75

Query:    74 FIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALA 133
              I++K+LGS       D L K+ ++  L   + FD GNK+ W+DK TGGLC+  S+K L+
Sbjct:    76 LILEKILGS-----FPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLS 130

Query:   134 ITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSK 193
             ITGIDDRRYW+HI +++SRF SVAY+QQIWWF+VDGE +F FP GTYS++FRLQLGKP K
Sbjct:   131 ITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGK 190

Query:   194 RLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVV-EDPSE 252
             R G +V   E VHGW+IKPVRF L+T DGQH+ SQC L   G+W HY   DFVV +  S 
Sbjct:   191 RFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTEAGNWSHYHAGDFVVGKSKSS 250

Query:   253 STKIKFSLTQIDCTHTKGGLCVDSVLICPSSFEKSLL 289
             STKIKFS+TQIDCTHTKGGLCVDSV++ PSS +  L+
Sbjct:   251 STKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDRLM 287

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2173078 PP2-A14 "phloem protein 2-A14" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 148/286 (51%), Positives = 201/286 (70%)

Query:     1 MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
             MGA  S I+     +  +     L D+PE+C+  + M+++PPEIC LAR+N++F  AS +
Sbjct:     1 MGAASSSIV---RSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRS 57

Query:    61 DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYL--SKKHLYARLCSPSPFDGGNKEMWLDK 118
             D +WE KLPSNY+F+V ++L    +  + D L   KK +YARLC P+ FD G KE WLDK
Sbjct:    58 DAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDK 117

Query:   119 NTGGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVG 178
              +G + ++IS KA+ ITGIDDRRYW HIS++ESRF S+ YL+QIWW E  G+  F+F  G
Sbjct:   118 RSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPG 177

Query:   179 TYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWV 238
              YSL F++QLGKP ++ GR+ C  + VHGWDIKPVRF L+TSDGQ A+S+  L+  G WV
Sbjct:   178 KYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDESGRWV 237

Query:   239 HYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPSSF 284
             ++   DFVVE+ +    +KFS+ QIDCTHTKGGLC+D V+ICP  +
Sbjct:   238 YHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEY 283

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2085236 PP2-A15 "phloem protein 2-A15" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 157/292 (53%), Positives = 204/292 (69%)

Query:     1 MGANVSGIIADSNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA 60
             MG+++S +   +NG    ++ P L D+PESCVA V M+L PPEIC LA LNR+FRGA+S+
Sbjct:     1 MGSSLSNLNDGTNG---LAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASS 57

Query:    61 DFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNT 120
             D +WE KLP NYQ ++D +            LSKK ++A L  P PFD  NKE+W+D+ T
Sbjct:    58 DSVWEKKLPENYQDLLDLL-----PPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVT 112

Query:   121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQFPVGTY 180
             G +C++IS++ ++ITGI+DRRYW  I TEESRF  VAYLQQIWWFEVDG   F  P G Y
Sbjct:   113 GRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVY 172

Query:   181 SLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENP------ 234
             SL FR+ LG+ +KRLGRRVC FE  HGWD+KPVRF L+TSDGQ A  + +L++       
Sbjct:   173 SLSFRIHLGRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEAL 232

Query:   235 -----GHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICP 281
                  G+W+ YRV +F+V     ST+I++S+ QIDCTH+KGGLCVDSV I P
Sbjct:   233 GKHKRGYWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINP 284

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 9.1e-25, Sum P(2) = 9.1e-25
 Identities = 55/160 (34%), Positives = 83/160 (51%)

Query:    12 SNGDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSN 71
             S G+ +S        +PE C++ ++    P + C  A +++ F  A S+D +W+  LP  
Sbjct:    49 SGGEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPE 108

Query:    72 YQFIVDKVLGSSSKTNMVDYLSKKHLYARLC-SPSPFDGGNKEMWLDKNTGGLCVSISSK 130
             Y+ +V     S S+     + SKK LY  LC +P   + G K  WL+K +G  C+ +SSK
Sbjct:   109 YESLV-----SRSRV----FASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSK 159

Query:   131 ALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGE 170
              L IT      YW  IS  ESRF  +A L  + WFE+ G+
Sbjct:   160 ELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGK 199

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 59/176 (33%), Positives = 94/176 (53%)

Query:    12 SNGDELSSLRP-RLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPS 70
             S  DE+S  R  R   +PE C++ V+ H  P + C +A ++++ + A+ +D +WE  LPS
Sbjct:    19 SRNDEISVTRASRFDALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPS 78

Query:    71 NYQFIVDKVLGSSSKTNMVDYLSKKHLYARLCSPSPF-DGGNKEMWLDKNTGGLCVSISS 129
              Y  +V   L S++      +LSKK ++  L   S   + G K  W++K +G  C  +S+
Sbjct:    79 EYSSLV---LQSAN------HLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSA 129

Query:   130 KALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEF-QFPVGT-YSLF 183
               L I   D   YW  I+  ES+F+ VA L+ + WFEV G+        GT YS++
Sbjct:   130 MELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVY 185

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
 Identities = 47/146 (32%), Positives = 76/146 (52%)

Query:    27 MPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKT 86
             +PE+CVA +L    P +    A ++  FR A  +DF+WE  LP++Y  ++ +    S+  
Sbjct:     3 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISR----STDP 58

Query:    87 NMVDYLSKKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHI 146
             + + + SKK LY  LC     D G K   ++K +G +   +SS+ L+IT  D R YW+  
Sbjct:    59 HRI-FSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWS 117

Query:   147 STEESRFQSVAYLQQIWWFEVDGEFE 172
                +SRF     L    W E+ G+ +
Sbjct:   118 PRSDSRFSEGVQLIMTDWLEIIGKIQ 143

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 73/264 (27%), Positives = 126/264 (47%)

Query:    28 PESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTN 87
             PE C++ ++   +P + C  A +++ F     +D IWE  LP++Y+ ++       S+  
Sbjct:    18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPP-----SRV- 71

Query:    88 MVDYLSKKHLYARLCS-PSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHI 146
                + SKK LY  LC+ P  FD   K +WL+K +G  C+ +S+  L+I   D+ +YW  I
Sbjct:    72 ---FSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWI 128

Query:   147 STEESRFQSVAYLQQIWWFEVDGEFEFQF--PVGTYSLFFRLQLGKPSKRLGRRVCKFEH 204
                ESRF+ VA L+ + WFE+ G    +   P   YS +   + G   K  G +    E 
Sbjct:   129 PIPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFK-GV-DKCYGFQNVAIEA 186

Query:   205 VHGW-DIKPVRFLLTTSD----GQHAVSQCFLENPGHWVHYRVADFVVEDP-SESTKIKF 258
               G    +P R L+  S+    G+  V +      G W+   + +F  +    ++ +I+ 
Sbjct:   187 AVGVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDG-WMEIELGEFFNDGGIMDNDEIEM 245

Query:   259 SLTQIDCTHTKGGLCVDSVLICPS 282
             S  +    + K GL +  + I P+
Sbjct:   246 SALETKQLNRKCGLIIQGIEIRPA 269

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 61/189 (32%), Positives = 98/189 (51%)

Query:    11 DSNGDELSSLRPRLSD-MPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLP 69
             +S+G  + S  P L D +PE C++ ++    P + C  A +++ F  A ++D +W+  LP
Sbjct:    34 ESSGGAIIS-GPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLP 92

Query:    70 SNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLC-SPSPFDGGNKEMWLDKNTGGLCVSIS 128
             S+Y  +V       S+     + SKK LY  +C +P   + G K  WL+K  G  C  +S
Sbjct:    93 SDYSSLVPP-----SRV----FSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLS 143

Query:   129 -SKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEF-QFPVGT-YSLF-- 183
               K++ IT +   +YW  IS  E+RF+ V  L  + WFEV G     +   GT YS +  
Sbjct:   144 PKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIV 203

Query:   184 FRLQLGKPS 192
             F+ + G P+
Sbjct:   204 FKTKNGCPN 212

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LEX0	P2A13_ARATH	No assigned EC number	0.6643	0.9662	0.9862	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam14299	154	pfam14299, PP2, Phloem protein 2	5e-57

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  180 bits (459), Expect = 5e-57
 Identities = 57/168 (33%), Positives = 83/168 (49%), Gaps = 20/168 (11%)

Query: 121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQF--PVG 178
           G  C  +S++AL+IT  DD RYW  I   ESRF  VA L  + W E+ G+   +   P  
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 179 TYSLFFRLQLGKPSKRLGRRVCKFEHVHGWDIKPVRFLLTTSDGQHAVSQ---CFLENPG 235
           TYS +   +L              +  +GWD KPV F ++  DGQ +  +   C  E  G
Sbjct: 61  TYSAYLVFKL-------------ADRAYGWDEKPVEFSVSVPDGQKSRQERYVCLPEKRG 107

Query: 236 -HWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCVDSVLICPS 282
             W+   V +F   +  E  +++FS+ ++D  H KGGL VD + I P 
Sbjct: 108 DGWMEIEVGEFFN-EGGEDGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.53
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.21
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.2
PF06881	109	Elongin_A: RNA polymerase II transcription factor	93.79
KOG3926	332	consensus F-box proteins [Amino acid transport and	82.07

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=3.9e-60  Score=408.38  Aligned_cols=148  Identities=35%  Similarity=0.696  Sum_probs=136.6

Q ss_pred             CceEEEEecccceeccCCCCCceeeeeccccccccceEEeeeeEEEEeeEEeeec--CCCeeEEEEEEEeCCCCcccCce
Q 022498          121 GGLCVSISSKALAITGIDDRRYWTHISTEESRFQSVAYLQQIWWFEVDGEFEFQF--PVGTYSLFFRLQLGKPSKRLGRR  198 (296)
Q Consensus       121 GkkCymLsAR~L~ItWgdd~rYW~Wi~~peSRF~EVAeL~~VcWLEI~Gki~t~l--p~t~Y~ay~v~kl~~~~~~~~~~  198 (296)
                      ||||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++  |+|+|+||||||+.         
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~---------   71 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLK---------   71 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEec---------
Confidence            8999999999999999999999999999999999999999999999999999994  99999999999994         


Q ss_pred             eeeccccccccCCceEEEEEecCCce--eeEEeee--cCCCcEEEEEeeeEEecCCCCccEEEEEEEEeeCCCccccEEE
Q 022498          199 VCKFEHVHGWDIKPVRFLLTTSDGQH--AVSQCFL--ENPGHWVHYRVADFVVEDPSESTKIKFSLTQIDCTHTKGGLCV  274 (296)
Q Consensus       199 ~~~~~~~~Gw~~~pv~~~l~~~~g~~--~~~~~~L--~~~DgW~EielGEF~~~~~~~~~eV~fsl~E~~~~~wK~GLiV  274 (296)
                          ++++||+..|++++++.++++.  +.+.+.+  .+.|||||||+|||+++++ ++++|+|+|+|+++++||+||||
T Consensus        72 ----~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~-~~~ev~f~~~E~~~~~wK~GLiv  146 (154)
T PF14299_consen   72 ----DDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGG-DDGEVEFSMYEVDSGHWKGGLIV  146 (154)
T ss_pred             ----CCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCC-CCcEEEEEEEEecCCcccCeEEE
Confidence                7899999999999999998875  3333333  3469999999999999875 78999999999999999999999


Q ss_pred             EeEEEEec
Q 022498          275 DSVLICPS  282 (296)
Q Consensus       275 ~GIeIRPk  282 (296)
                      +|||||||
T Consensus       147 ~GieIRPK  154 (154)
T PF14299_consen  147 EGIEIRPK  154 (154)
T ss_pred             EEEEEecC
Confidence            99999998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.53  E-value=4.5e-08  Score=67.75  Aligned_cols=44  Identities=20%  Similarity=0.522  Sum_probs=39.7

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498           24 LSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK   67 (296)
Q Consensus        24 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f   67 (296)
                      +.+||+|.+..|+++++|.|.++++.||+.|+.++.++.+|.++
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~   44 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRL   44 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence            47899999999999999999999999999999999999999865

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.21  E-value=3e-07  Score=63.31  Aligned_cols=45  Identities=24%  Similarity=0.556  Sum_probs=39.1

Q ss_pred             CCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498           23 RLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK   67 (296)
Q Consensus        23 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f   67 (296)
                      .|.+||++++.+|++++++.|.++++.||+.|+.+++++..|.++
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            367899999999999999999999999999999999999999764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.20  E-value=1.7e-06  Score=56.98  Aligned_cols=40  Identities=20%  Similarity=0.517  Sum_probs=38.5

Q ss_pred             chhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhcc
Q 022498           27 MPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWES   66 (296)
Q Consensus        27 LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~   66 (296)
                      ||++++..|+++++|.|.+++++||+.||.+.+.+.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=93.79  E-value=0.05  Score=44.33  Aligned_cols=71  Identities=15%  Similarity=0.285  Sum_probs=57.5

Q ss_pred             CCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCChhhhhhhccCCCCcCCCCCCCcHHHHHHHhc
Q 022498           23 RLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYARLC  102 (296)
Q Consensus        23 ~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~~~i~~~~~~~~~~~~~~~~~SKKeLy~~Lc  102 (296)
                      .++++|-+.|.-||...+|....++-.-|+.+  +-++|.+|.+|+=.||+.-.....+       ..+-|-+++|.++.
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~~-------~~~~~Wr~~Y~~~~   73 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQKP-------KEPESWRELYEKLK   73 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcccc-------cccchHHHHHHHHH
Confidence            47899999999999999999999999999866  5679999999999999752222111       23358899999986

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=82.07  E-value=1.3  Score=42.44  Aligned_cols=78  Identities=22%  Similarity=0.289  Sum_probs=56.9

Q ss_pred             CCCCCCCchhHHHHHHHhcCC-hHHHHHHHhhhHHhhcccCchhhhccCCCCChh--hhhhhccCCCCcCCCCCCCcHHH
Q 022498           20 LRPRLSDMPESCVALVLMHLD-PPEICKLARLNRAFRGASSADFIWESKLPSNYQ--FIVDKVLGSSSKTNMVDYLSKKH   96 (296)
Q Consensus        20 ~~~~~~~LPe~cia~ils~ts-P~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~~--~i~~~~~~~~~~~~~~~~~SKKe   96 (296)
                      .+..|-|||++|+-.||-+++ -+|.--+|.|-+++.-..+-+-+|.+..--.|.  +|-....- +.    ....--|+
T Consensus       198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l-~k----~~q~dWkq  272 (332)
T KOG3926|consen  198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILIL-SK----KGQKDWKQ  272 (332)
T ss_pred             CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh-cc----ccchhHHH
Confidence            577899999999999999887 899999999999999999999999977553332  23222110 00    11123578


Q ss_pred             HHHHhc
Q 022498           97 LYARLC  102 (296)
Q Consensus        97 Ly~~Lc  102 (296)
                      +|+.|-
T Consensus       273 myf~L~  278 (332)
T KOG3926|consen  273 MYFQLR  278 (332)
T ss_pred             HHHHHH
Confidence            888875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 6e-07
 Identities = 45/312 (14%), Positives = 89/312 (28%), Gaps = 82/312 (26%)

Query: 4   NVSGIIADSN-GDELSSLRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFR--GASSA 60
                + + +  D     +  LS   E    +++       +    RL            
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSK--EEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMV 79

Query: 61  DFIWESKLPSNYQFIVDKVLGSSSKT--NMVDYLSKKHLYARLC-SPSPFDGGN----KE 113
               E  L  NY+F++  +     +       Y+ ++    RL      F   N    + 
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD---RLYNDNQVFAKYNVSRLQP 136

Query: 114 MW--------LDKNTGGLCVSI-----SSK-ALAITGIDDRR---------YWTHISTEE 150
                     L        V I     S K  +A+      +         +W ++    
Sbjct: 137 YLKLRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 151 SRFQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPSKR--LGRR---------- 198
           S    +  LQ++  +++D  +       + ++  R+   +   R  L  +          
Sbjct: 194 SPETVLEMLQKL-LYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 199 -VCKFEHVHGWDIKPVRFLLTTSDGQHAVSQCFLENPGHWVHYRVADFVVEDPSESTKIK 257
            V   +  + +++   + LLTT   Q                  V DF+    S +T   
Sbjct: 252 NVQNAKAWNAFNLS-CKILLTTRFKQ------------------VTDFL----SAATTTH 288

Query: 258 FSLTQIDCTHTK 269
            SL     T T 
Sbjct: 289 ISLDHHSMTLTP 300

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 21/191 (10%), Positives = 56/191 (29%), Gaps = 62/191 (32%)

Query: 41  PPEICKLARLNRAFRGASSADFI--WESKLPSNYQFI----VDKVLGSSSKTNMVDYLS- 93
           P E+        +    S  D +  W+     N++ +    +  ++ SS     ++ L  
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWD-----NWKHVNCDKLTTIIESS-----LNVLEP 368

Query: 94  --KKHLYARLCSPSPFDGGNKEMWLDKNTGGLCVSISSKALAITGIDDRRYWTHISTEES 151
              + ++ RL   S F           +       I +  L++        W  +   + 
Sbjct: 369 AEYRKMFDRL---SVF---------PPS-----AHIPTILLSL-------IWFDVIKSDV 404

Query: 152 R-----FQSVAYLQQIWWFEVDGEFEFQFPVGTYSLFFRLQLGKPS-----KRLGRRVCK 201
                     + +++    E          +   S++  L++   +     + +      
Sbjct: 405 MVVVNKLHKYSLVEK-QPKE--------STISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 202 FEHVHGWDIKP 212
            +     D+ P
Sbjct: 456 PKTFDSDDLIP 466

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.65
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.21
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.63
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.5
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.15
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.45
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	90.08

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.65  E-value=1.5e-08  Score=70.66  Aligned_cols=47  Identities=15%  Similarity=0.331  Sum_probs=40.5

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498           21 RPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK   67 (296)
Q Consensus        21 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f   67 (296)
                      ...+.+||++++..|+++++|.|.+++++||+.|+.++.++.+|.++
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            56789999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.21  E-value=3.4e-07  Score=86.11  Aligned_cols=81  Identities=17%  Similarity=0.333  Sum_probs=61.2

Q ss_pred             CCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCChh---hhhhhccCCC-----C--cCCCCCC
Q 022498           22 PRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQ---FIVDKVLGSS-----S--KTNMVDY   91 (296)
Q Consensus        22 ~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~~~---~i~~~~~~~~-----~--~~~~~~~   91 (296)
                      ..|++||.+++-+|+||++|.|+||+|+||+.+|..|+.+.+|..|+-.|++   +|...+.+.-     +  ......+
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~   82 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAF   82 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----C
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCcccccccccc
Confidence            3578999999999999999999999999999999999999999999987754   4444333200     0  0000124


Q ss_pred             CcHHHHHHHhc
Q 022498           92 LSKKHLYARLC  102 (296)
Q Consensus        92 ~SKKeLy~~Lc  102 (296)
                      ...+.+|.+=|
T Consensus        83 ~~~~~~y~~~~   93 (312)
T 3l2o_B           83 FDYMAVYRMCC   93 (312)
T ss_dssp             CCHHHHHHHHC
T ss_pred             ccHHHHHHhcC
Confidence            56899999966

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.63  E-value=2.2e-05  Score=73.57  Aligned_cols=81  Identities=14%  Similarity=0.128  Sum_probs=61.2

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHH-HHHhhhHHhhcccCchhhhccCCCCChhhhhhhccCCCCcCCCCCCCcHHHHHH
Q 022498           21 RPRLSDMPESCVALVLMHLDPPEIC-KLARLNRAFRGASSADFIWESKLPSNYQFIVDKVLGSSSKTNMVDYLSKKHLYA   99 (296)
Q Consensus        21 ~~~~~~LPe~cia~ils~tsP~dac-r~a~vs~~fr~Aa~sD~VW~~fLP~~~~~i~~~~~~~~~~~~~~~~~SKKeLy~   99 (296)
                      ...+..||++.+..||+++.|+|.+ |+++|++.+|..++++.+|.+.+...  .+......  .    +...+-|.+|+
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~~--~----~~~~~Wk~~y~  119 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGSA--D----EERDHWQQFYF  119 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC-----------CCSCHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Cccccccc--C----CCCCChhhhhe
Confidence            4678999999999999999999999 99999999999999999999987654  11111100  0    23456899998


Q ss_pred             Hhc-CCCccCC
Q 022498          100 RLC-SPSPFDG  109 (296)
Q Consensus       100 ~Lc-~pvlld~  109 (296)
                      .-- .-+||.+
T Consensus       120 ~~~~gRNLL~N  130 (297)
T 2e31_A          120 LSKRRRNLLRN  130 (297)
T ss_dssp             HHHHCCCCSSC
T ss_pred             heecccceeec
Confidence            743 3466655

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.50  E-value=3.2e-05  Score=72.04  Aligned_cols=48  Identities=25%  Similarity=0.454  Sum_probs=44.7

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCC
Q 022498           21 RPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKL   68 (296)
Q Consensus        21 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fL   68 (296)
                      .--|..||++++..|++|++|.|.|++++||+.|+..++.+.+|.+++
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhe
Confidence            445789999999999999999999999999999999999999999765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.15  E-value=9.2e-05  Score=68.81  Aligned_cols=45  Identities=11%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCc-hhhhccCC
Q 022498           24 LSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSA-DFIWESKL   68 (296)
Q Consensus        24 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~s-D~VW~~fL   68 (296)
                      |..||+|.+..|+++++|.|.|++++||+.++..+++ +.+|.+++
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6789999999999999999999999999999998887 89999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.09  E-value=7.7e-05  Score=69.49  Aligned_cols=48  Identities=15%  Similarity=0.401  Sum_probs=44.0

Q ss_pred             CCCchhH----HHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCC
Q 022498           24 LSDMPES----CVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSN   71 (296)
Q Consensus        24 ~~~LPe~----cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~   71 (296)
                      |..||++    .+..|+++++|.|.|++++||+.|+..++.+.+|.+++-..
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            5779999    99999999999999999999999999999999999876543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.45  E-value=0.0012  Score=59.43  Aligned_cols=48  Identities=15%  Similarity=0.308  Sum_probs=41.3

Q ss_pred             CCCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccC
Q 022498           20 LRPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESK   67 (296)
Q Consensus        20 ~~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~f   67 (296)
                      ....+++||++++..|+++++++|.++++.|++.++.++.....|.++
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            356789999999999999999999999999999999998666667643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.29  E-value=0.038  Score=53.30  Aligned_cols=35  Identities=9%  Similarity=0.167  Sum_probs=29.4

Q ss_pred             CCCCchhHHHHHHHhcCC-hHHHHHHHhhhHHhhcc
Q 022498           23 RLSDMPESCVALVLMHLD-PPEICKLARLNRAFRGA   57 (296)
Q Consensus        23 ~~~~LPe~cia~ils~ts-P~dacr~a~vs~~fr~A   57 (296)
                      .+++||++++..|++|++ ++|++++|.||+.++.+
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            468999999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=90.08  E-value=0.12  Score=49.86  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=31.7

Q ss_pred             CCCchhHHHHHHHhcC-ChHHHHHHHhhhHHhhcc
Q 022498           24 LSDMPESCVALVLMHL-DPPEICKLARLNRAFRGA   57 (296)
Q Consensus        24 ~~~LPe~cia~ils~t-sP~dacr~a~vs~~fr~A   57 (296)
                      ..+||++++.+|++|+ +++|+++++.||+.++.+
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            3589999999999999 899999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.004

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 29/80 (36%)

Query: 21  RPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSNYQFIVDKVL 80
           R  +S +P+     VL  L+P ++ + A+  R +R  +  + +W  K           + 
Sbjct: 16  RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIK 75

Query: 81  GSSSKTNMVDYLSKKHLYAR 100
                     +   K  Y R
Sbjct: 76  RRKVIKPGFIHSPWKSAYIR 95

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (74), Expect = 0.004
 Identities = 7/40 (17%), Positives = 20/40 (50%)

Query: 25 SDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIW 64
            +P+  +  +   L  PE+ K++ + + +   +S + +W
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.83
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.01
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.82

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=9.6e-10  Score=84.10  Aligned_cols=51  Identities=24%  Similarity=0.431  Sum_probs=45.8

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCCC
Q 022498           21 RPRLSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPSN   71 (296)
Q Consensus        21 ~~~~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~~   71 (296)
                      .--|..||+|++..|+++++|.|+|++|+||+.|+.++++|.+|.+.+-.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~   66 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            344788999999999999999999999999999999999999998765443

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.6e-09  Score=71.16  Aligned_cols=41  Identities=17%  Similarity=0.395  Sum_probs=39.7

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhh
Q 022498           24 LSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSADFIW   64 (296)
Q Consensus        24 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW   64 (296)
                      ++.||++++..|+++++|.|.+|+++||+.|+.++.++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            47899999999999999999999999999999999999998

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=4e-07  Score=69.40  Aligned_cols=44  Identities=9%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHHhhhHHhhcccCch-hhhccC
Q 022498           24 LSDMPESCVALVLMHLDPPEICKLARLNRAFRGASSAD-FIWESK   67 (296)
Q Consensus        24 ~~~LPe~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD-~VW~~f   67 (296)
                      |.+||+|.+..|+++++|.|.+++|.||+.|+..+.+| .+|.+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            56899999999999999999999999999999887665 789864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.6e-06  Score=67.62  Aligned_cols=47  Identities=15%  Similarity=0.425  Sum_probs=42.4

Q ss_pred             CCCchh----HHHHHHHhcCChHHHHHHHhhhHHhhcccCchhhhccCCCC
Q 022498           24 LSDMPE----SCVALVLMHLDPPEICKLARLNRAFRGASSADFIWESKLPS   70 (296)
Q Consensus        24 ~~~LPe----~cia~ils~tsP~dacr~a~vs~~fr~Aa~sD~VW~~fLP~   70 (296)
                      |..||.    |-+..|+||++|.|.|++|+||+.|+..++++.+|.++.-.
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            456775    99999999999999999999999999999999999987643