Citrus Sinensis ID: 022505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MLLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEcccccccccEEEEccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccccccEEEEEEcccEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccccEEcccccccccEEEEEEcccccccccccccccccEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEccccEEEEEEccccccccccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccEEEEEEcccEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccEEccccEEEEEcccccccEEEEccEEEEcccccccEEEEEEEccHccccccccccccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
mllckpslslispctlpktltlkptkkpsltIINSIttnnerkpisAFEARVSLVFALASQTSSLSQRLLMDLATETakyvfpkrfesqNLEEALMavpdletvKFKVLSRRGQYEIREVESYFIAetmmpgrtgfdfngasrSFNVLAEYLfgkntkretmemttpvitrktqsdgekmemttPVISKkledqdkwqmsfvmpskyganlplpkdpsvrikevpKKVVAVVAFSgfvtdedvKRRELKLRDALkgdrqfrvkegasvevaqynppftlpftrrNEIALEVERKEE
Flexible Loop (DISEMBL)
mllckpslslispctlpktltlkptkkpsltiinsittnnerkpiSAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEAlmavpdletvkfkvlsrrgqyeiREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYlfgkntkretmemttpvitrktqsdgekmeMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVafsgfvtdedvkrrelklrdalkgdrqfrvkegasvevaqynppftlpftrrNEIALEVERKEE
Low Complexity Region (SEG)
MLLCKPSLSLIspctlpktltlkptkkpsltIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEvpkkvvavvaFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Disordered region (IsUnstruct)
*********LISPCTLPKTLTL******SLTIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKN********************************************FV****************VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKG*RQFRVKEGASVEVAQYNPPFTLPFTR*************
Disordered Region (DISOPRED)
************************TKKPSLT*****************EARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRT*FDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQS**EKM**TTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK**
Disordered Region (DISEMBL)
MLLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Disordered Region (DISPRO)
*LLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSIT*****KPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q9SR77	309	Heme-binding-like protein	yes	no	0.851	0.815	0.735	1e-103
Q5ISC6	189	Heme-binding protein 1 OS	yes	no	0.415	0.650	0.3	2e-08
Q6NU05	190	Heme-binding protein 1 OS	N/A	no	0.516	0.805	0.264	7e-08
Q6DJ66	190	Heme-binding protein 1 OS	yes	no	0.516	0.805	0.258	1e-07
Q5ZMB2	189	Heme-binding protein 1 OS	yes	no	0.560	0.878	0.290	1e-07
Q9NRV9	189	Heme-binding protein 1 OS	yes	no	0.418	0.656	0.307	2e-07
Q9R257	190	Heme-binding protein 1 OS	yes	no	0.385	0.6	0.303	2e-06
Q9Y5Z4	205	Heme-binding protein 2 OS	no	no	0.533	0.770	0.275	0.0006

>sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/253 (73%), Positives = 224/253 (88%), Gaps = 1/253 (0%)

Query: 45  ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQ-NLEEALMAVPDLET 103
           +SA E+RVSLV ALASQ SS+SQRLL DLA ETAKYVFPKRF+S  NLEEA M+VPDLET
Sbjct: 57  VSATESRVSLVLALASQASSVSQRLLADLAMETAKYVFPKRFDSSTNLEEAFMSVPDLET 116

Query: 104 VKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETME 163
           + F+VL R  +YEIR+VE YF+AET+MPG TGFD  GAS+SFNVLAEYLFGKNT +E ME
Sbjct: 117 MNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAEYLFGKNTIKEKME 176

Query: 164 MTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKE 223
           MTTPV+TRK QS GEKMEMTTPVI+ K +DQ++W+MSFVMPSKYG+NLPLPKDPSV+I++
Sbjct: 177 MTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKYGSNLPLPKDPSVKIQQ 236

Query: 224 VPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTR 283
           VP+K+VAVVAFSG+VTDE+++RRE +LR AL+ D++FRV++G S EVAQYNPPFTLPF R
Sbjct: 237 VPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQYNPPFTLPFMR 296

Query: 284 RNEIALEVERKEE 296
           RNE++LEVE KE+
Sbjct: 297 RNEVSLEVENKED 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ISC6|HEBP1_PIG Heme-binding protein 1 OS=Sus scrofa GN=HEBP1 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 17/140 (12%)

Query: 150 EYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGA 209
           +Y+ G N K   M MT P+      SDG  +             Q K ++ F +P+++ +
Sbjct: 64  KYVGGSNDKGIGMGMTVPISFAVFPSDGGSL-------------QKKLKVWFRIPNEFQS 110

Query: 210 NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVE 269
           N P+P D S++I+E     V  + F G+  + D   R  +LR AL+G    R        
Sbjct: 111 NPPVPSDDSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSD---VYF 167

Query: 270 VAQYNPPFTLPFTRRNEIAL 289
              Y+PP   P+ RRNE+ L
Sbjct: 168 CTGYDPPMK-PYGRRNEVWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Sus scrofa (taxid: 9823)

>sp|Q6NU05|HEBP1_XENLA Heme-binding protein 1 OS=Xenopus laevis GN=hebp1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 21/174 (12%)

Query: 115 YEIREVESYFIAETMMPGRTGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPVITRKT 173
           +E RE E      T + G+    F+ AS+   + L +Y+ G N K   M MT+PVI    
Sbjct: 31  FEEREYEGGKFISTEVSGKP---FDEASKEGVLRLLKYVGGSNNKSAGMGMTSPVIINSY 87

Query: 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVA 233
            S+ + ++    V+ +             +PS+Y A+ P+P D +++I++     +    
Sbjct: 88  PSENDTLQPNVKVLLR-------------IPSQYQADPPVPTDNTIQIEDRESVTLYSTQ 134

Query: 234 FSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
           F G+  + D      KLR  L  D  +            Y+PP   P+ RRNE+
Sbjct: 135 FGGYAKEADYVSHAAKLRSCLGPDISYHSD---YYMCCGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus laevis (taxid: 8355)

>sp|Q6DJ66|HEBP1_XENTR Heme-binding protein 1 OS=Xenopus tropicalis GN=hebp1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 21/174 (12%)

Query: 115 YEIREVESYFIAETMMPGRTGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPVITRKT 173
           +E RE E      T + G+    F+ AS+   + L +Y+ G N K   M MT+PV+    
Sbjct: 31  FEEREYEGGKFVSTEVSGKP---FDEASKEAVLRLLKYVGGSNQKYAGMGMTSPVVITSY 87

Query: 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVA 233
            ++ E ++    V+ +             +PS+Y A+ P+P D ++ I++          
Sbjct: 88  PAENETLQPNVKVLLR-------------IPSQYQADPPVPTDDTIHIEDRESVTFYSTQ 134

Query: 234 FSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
           F G+  + D      KLR  L  D  +            Y+PP   P+ RRNE+
Sbjct: 135 FGGYAKEADYVSHAAKLRSCLGPDISYHTDH---YMCCGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZMB2|HEBP1_CHICK Heme-binding protein 1 OS=Gallus gallus GN=HEBP1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 27/193 (13%)

Query: 101 LETVKFKVLSRRGQ----YEIREVESYFIAETMMPGRTGFDFNGASRSFNV-LAEYLFGK 155
           +ET  ++VLS+  +    YE RE E    A   +   TG  F+ AS+   + L +Y+ G 
Sbjct: 13  VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEV---TGKPFDEASKEAALKLLKYVGGS 69

Query: 156 NTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
           N K   M MT PV IT     DG                Q K ++   +P+++ A+ P P
Sbjct: 70  NDKGAGMGMTAPVSITAFPAEDGSL--------------QQKVKVYLRIPNQFQASPPCP 115

Query: 215 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
            D S++I+E     +    F G+  + D      KL+ AL  +  +R           Y+
Sbjct: 116 SDESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYRKD---FYFCNGYD 172

Query: 275 PPFTLPFTRRNEI 287
           PP   P+ RRNE+
Sbjct: 173 PPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Gallus gallus (taxid: 9031)

>sp|Q9NRV9|HEBP1_HUMAN Heme-binding protein 1 OS=Homo sapiens GN=HEBP1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 19/143 (13%)

Query: 148 LAEYLFGKNTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSK 206
           +A+Y  G N K   M MT P+        DG         + KKL      ++ F +P++
Sbjct: 62  VAKYAGGTNDKGIGMGMTVPISFAVFPNEDGS--------LQKKL------KVWFRIPNQ 107

Query: 207 YGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGA 266
           + ++ P P D SV+I+E     V  + F G+  + D   +  +LR AL+G   +R   G 
Sbjct: 108 FQSDPPAPSDKSVKIEEREGITVYSMQFGGYAKEADYVAQATRLRAALEGTATYR---GD 164

Query: 267 SVEVAQYNPPFTLPFTRRNEIAL 289
                 Y+PP   P+ RRNEI L
Sbjct: 165 IYFCTGYDPPMK-PYGRRNEIWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Homo sapiens (taxid: 9606)

>sp|Q9R257|HEBP1_MOUSE Heme-binding protein 1 OS=Mus musculus GN=Hebp1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEVPKK 227
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 69  TNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 128

Query: 228 VVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
            V    F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 129 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 185

Query: 288 AL 289
            L
Sbjct: 186 WL 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Mus musculus (taxid: 10090)

>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 20/178 (11%)

Query: 113 GQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 171
           G YEIR    Y  A+ +       D++ A ++ F  L  Y+ GKN K   ++MT PV + 
Sbjct: 36  GSYEIRH---YGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 92

Query: 172 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAV 231
                G   E T  +             S  +PS+   + P P +  V I++  +  V V
Sbjct: 93  VEPGSGPFSESTITI-------------SLYIPSEQQFDPPRPLESDVFIEDRAEMTVFV 139

Query: 232 VAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 289
            +F GF + +  + + L L   L+ D   +V +      A YN P  L   R NE+ L
Sbjct: 140 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
225440878	285	PREDICTED: heme-binding-like protein At3	0.881	0.915	0.796	1e-120
356572562	303	PREDICTED: heme-binding-like protein At3	0.983	0.960	0.719	1e-119
255575711	297	protein with unknown function [Ricinus c	0.979	0.976	0.765	1e-119
297740118	252	unnamed protein product [Vitis vinifera]	0.847	0.996	0.820	1e-118
147794498	252	hypothetical protein VITISV_021815 [Viti	0.847	0.996	0.816	1e-117
357511075	296	Heme-binding-like protein [Medicago trun	0.966	0.966	0.702	1e-115
356503813	304	PREDICTED: heme-binding-like protein At3	0.972	0.947	0.678	1e-112
449462962	305	PREDICTED: heme-binding-like protein At3	0.966	0.937	0.672	1e-110
297829544	317	soul heme-binding family protein [Arabid	0.885	0.826	0.729	1e-110
224140257	253	predicted protein [Populus trichocarpa]	0.837	0.980	0.732	1e-102

>gi|225440878|ref|XP_002282544.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Vitis vinifera]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/261 (79%), Positives = 238/261 (91%)

Query: 35  SITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEA 94
           S++++ +R+ +S FEARVSLV AL SQ SS+SQRLLMDLA+ET KY FP+RFES NLEEA
Sbjct: 24  SLSSSPQRRAMSGFEARVSLVLALVSQASSVSQRLLMDLASETTKYAFPRRFESSNLEEA 83

Query: 95  LMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFG 154
           LM+VPDLETVKFKVLSR+ QYEIREVE YFIAET MPG+ GFDFNG+S+SFNVLAEYLFG
Sbjct: 84  LMSVPDLETVKFKVLSRKDQYEIREVEPYFIAETTMPGKNGFDFNGSSQSFNVLAEYLFG 143

Query: 155 KNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
           KNT +E MEMTTPV TR+ QSDG+KMEMTTPVI+KKL+DQDKWQMSFVMP+KYGA+LPLP
Sbjct: 144 KNTTKERMEMTTPVFTRRDQSDGKKMEMTTPVITKKLQDQDKWQMSFVMPAKYGADLPLP 203

Query: 215 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
           KD SVRIKEVP+K+VAVVAFSGFVTDE+VK RE KLR AL+ D+QF+VKEGA VEVAQYN
Sbjct: 204 KDQSVRIKEVPRKIVAVVAFSGFVTDEEVKLRESKLRSALRNDKQFQVKEGAPVEVAQYN 263

Query: 275 PPFTLPFTRRNEIALEVERKE 295
           PPFTLPFTRRNE+ALEVERK+
Sbjct: 264 PPFTLPFTRRNEVALEVERKQ 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572562|ref|XP_003554437.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/299 (71%), Positives = 248/299 (82%), Gaps = 8/299 (2%)

Query: 3   LCKPSLSLISPCTLPKTLTLKPTKKPS-LTIINS------ITTNNERKPISAFEARVSLV 55
           +C PS SL     +   + +KP K  S L++ NS      I+++  R+ IS FE+R+SL+
Sbjct: 4   ICNPS-SLSRQPGIVAPIPVKPIKHSSNLSVTNSASSGERISSSTRRRTISPFESRISLI 62

Query: 56  FALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQY 115
           FALASQ +SLSQRLL D+A ETAKYVFPKRFES+NLEEALM+VPDLETV FKVLSR  QY
Sbjct: 63  FALASQANSLSQRLLADVAAETAKYVFPKRFESRNLEEALMSVPDLETVDFKVLSRMDQY 122

Query: 116 EIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQS 175
           EIREVE YF+AET MPG++GFDFNGASRSFN LAEYLFGKNT +E MEMTTPV T K QS
Sbjct: 123 EIREVEPYFVAETTMPGKSGFDFNGASRSFNALAEYLFGKNTTKEKMEMTTPVFTSKNQS 182

Query: 176 DGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFS 235
           DG KM+MTTPV++ K+EDQD W+MSFVMPSKYGANLPLPKD SVRIKEVP+K+VAVV+FS
Sbjct: 183 DGVKMDMTTPVLTTKMEDQDNWKMSFVMPSKYGANLPLPKDSSVRIKEVPRKIVAVVSFS 242

Query: 236 GFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 294
           GFV DE++K+RELKLRDALK D QF +KEG SVEVAQYNPPFTLPF RRNEIALEVE K
Sbjct: 243 GFVNDEEIKQRELKLRDALKSDSQFEIKEGTSVEVAQYNPPFTLPFQRRNEIALEVEWK 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575711|ref|XP_002528755.1| protein with unknown function [Ricinus communis] gi|223531849|gb|EEF33667.1| protein with unknown function [Ricinus communis]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/303 (76%), Positives = 256/303 (84%), Gaps = 13/303 (4%)

Query: 1   MLLCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNN-------ERKPISAFEARVS 53
           MLLC PS  +I      KTLT   T     TII S+ T+         +   SAFEARVS
Sbjct: 1   MLLCNPS-PMIQIQYRCKTLTASST-----TIIKSMVTDRTATSAQPRKATSSAFEARVS 54

Query: 54  LVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRG 113
           L+FALASQTS++SQRLL DLA ETAKYVFPKRF S+NLEEALMAVPDLETV++KVLSRR 
Sbjct: 55  LIFALASQTSNVSQRLLFDLANETAKYVFPKRFASRNLEEALMAVPDLETVEYKVLSRRD 114

Query: 114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 173
           QYEIREVE YFIAET MPG+TGFD NGAS+SFNVLAEYLFGKN  +E MEMTTPV TRK 
Sbjct: 115 QYEIREVEPYFIAETTMPGKTGFDLNGASQSFNVLAEYLFGKNVTKEKMEMTTPVFTRKV 174

Query: 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVA 233
           QSDGEKMEMTTPVI+KK+EDQDKWQMSFVMPSKYGA+LPLPKD +V+IKEVPKKVVAVVA
Sbjct: 175 QSDGEKMEMTTPVITKKVEDQDKWQMSFVMPSKYGADLPLPKDKTVKIKEVPKKVVAVVA 234

Query: 234 FSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 293
           FSGFVTDEDVK+RELKLR+ALK D  FRVK+GAS+EVAQYNPPFTLPFTRRNEIA+E+ER
Sbjct: 235 FSGFVTDEDVKQRELKLRNALKNDPLFRVKKGASMEVAQYNPPFTLPFTRRNEIAIEIER 294

Query: 294 KEE 296
           KEE
Sbjct: 295 KEE 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740118|emb|CBI30300.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/251 (82%), Positives = 230/251 (91%)

Query: 45  ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETV 104
           +S FEARVSLV AL SQ SS+SQRLLMDLA+ET KY FP+RFES NLEEALM+VPDLETV
Sbjct: 1   MSGFEARVSLVLALVSQASSVSQRLLMDLASETTKYAFPRRFESSNLEEALMSVPDLETV 60

Query: 105 KFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEM 164
           KFKVLSR+ QYEIREVE YFIAET MPG+ GFDFNG+S+SFNVLAEYLFGKNT +E MEM
Sbjct: 61  KFKVLSRKDQYEIREVEPYFIAETTMPGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEM 120

Query: 165 TTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEV 224
           TTPV TR+ QSDG+KMEMTTPVI+KKL+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEV
Sbjct: 121 TTPVFTRRDQSDGKKMEMTTPVITKKLQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEV 180

Query: 225 PKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRR 284
           P+K+VAVVAFSGFVTDE+VK RE KLR AL+ D+QF+VKEGA VEVAQYNPPFTLPFTRR
Sbjct: 181 PRKIVAVVAFSGFVTDEEVKLRESKLRSALRNDKQFQVKEGAPVEVAQYNPPFTLPFTRR 240

Query: 285 NEIALEVERKE 295
           NE+ALEVERK+
Sbjct: 241 NEVALEVERKQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794498|emb|CAN62765.1| hypothetical protein VITISV_021815 [Vitis vinifera]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/251 (81%), Positives = 228/251 (90%)

Query: 45  ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETV 104
           +S FEARVSLV AL SQ SS+SQRLLMDLA+ET KY FP+RFES NLEEALM+VPDLETV
Sbjct: 1   MSGFEARVSLVLALVSQASSVSQRLLMDLASETXKYAFPRRFESSNLEEALMSVPDLETV 60

Query: 105 KFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEM 164
           KFKVLSR+ QYEIREVE YFIAET MPG+ GFDFNG+S+SFNVLAEYLFGKNT +E MEM
Sbjct: 61  KFKVLSRKDQYEIREVEPYFIAETTMPGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEM 120

Query: 165 TTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEV 224
           TTPV TR+ QSDG KMEMTTPVI+KKL+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEV
Sbjct: 121 TTPVFTRRDQSDGXKMEMTTPVITKKLQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEV 180

Query: 225 PKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRR 284
           P+K+VAVVAFSGFVTDE+VK RE KLR AL+ D+QF+VKEGA VEVAQYNPPFTLPF RR
Sbjct: 181 PRKIVAVVAFSGFVTDEEVKLRESKLRSALRNDKQFQVKEGAPVEVAQYNPPFTLPFARR 240

Query: 285 NEIALEVERKE 295
           NE+ALEVERK+
Sbjct: 241 NEVALEVERKQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511075|ref|XP_003625826.1| Heme-binding-like protein [Medicago truncatula] gi|355500841|gb|AES82044.1| Heme-binding-like protein [Medicago truncatula]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/296 (70%), Positives = 247/296 (83%), Gaps = 10/296 (3%)

Query: 3   LCKPSLSLISPCTLPKTLTLKPTKKPSLTIINSITTNN----ERKPISAFEARVSLVFAL 58
           LC PSLS+ S       +++KP K   ++I NS ++NN    +R+ ISAFEAR+SL+FAL
Sbjct: 5   LCNPSLSIQSA-----PISVKPNKT-IISITNSASSNNRVSTQRRTISAFEARISLIFAL 58

Query: 59  ASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIR 118
           ASQ+ SLSQRL+ D+ATETAKY+FPKRFES+ LEEALM VPDLETV FKVL+ R QYEIR
Sbjct: 59  ASQSFSLSQRLVADVATETAKYLFPKRFESRTLEEALMTVPDLETVNFKVLTIRDQYEIR 118

Query: 119 EVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGE 178
           E+E YF+AET MPG++GFDF G+S+SFNVLAEYLFGKNTK+E MEMTTPV T K QSDG 
Sbjct: 119 EIEPYFVAETTMPGKSGFDFRGSSQSFNVLAEYLFGKNTKKEKMEMTTPVFTTKKQSDGV 178

Query: 179 KMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFV 238
           KM+MTTPV++ K  D+D+W+MSFVMPSKYGANLPLPKD SV IKEV +K VAVV+FSGFV
Sbjct: 179 KMDMTTPVLTTKTVDKDEWKMSFVMPSKYGANLPLPKDSSVAIKEVARKTVAVVSFSGFV 238

Query: 239 TDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 294
            DE+VKRRELKLR+ALK D QF++KEG S+E+AQYNPPF LPF RRNEIALEVE K
Sbjct: 239 NDEEVKRRELKLREALKNDGQFKIKEGTSIEIAQYNPPFALPFQRRNEIALEVEWK 294

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503813|ref|XP_003520697.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/302 (67%), Positives = 248/302 (82%), Gaps = 14/302 (4%)

Query: 1   MLLCKPSLSLISPCTLPKTLTLKPTKKPS-LTIINS------ITTNNERKPISAFEARVS 53
           +LL     S+++P      + +KPTK  S L++ NS      I+++  R+ IS FE+R+S
Sbjct: 7   LLLFSLQSSILTP------IPVKPTKLSSNLSVTNSASYGERISSSTRRRTISPFESRIS 60

Query: 54  LVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRG 113
           L+FALA Q ++LSQRLL D+A ETAKYVFPKRFE++NLEEALM+VP+LETV+FKVLSRR 
Sbjct: 61  LIFALAPQANTLSQRLLADVAAETAKYVFPKRFENRNLEEALMSVPNLETVEFKVLSRRD 120

Query: 114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT 173
           QYEIREVE YF+AET MPG++GFDFNGASRSFNVLAEY FGKNT +E MEM TPV T K 
Sbjct: 121 QYEIREVEPYFVAETTMPGKSGFDFNGASRSFNVLAEYHFGKNTTKEKMEMNTPVFTSKN 180

Query: 174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVA 233
           QSDG KM+MTTPV++ K+EDQD W+MSFVMPSKYGANLPL KD SVRIKEVP+K++ VV+
Sbjct: 181 QSDGVKMDMTTPVLTTKMEDQDNWKMSFVMPSKYGANLPLAKDSSVRIKEVPRKIIDVVS 240

Query: 234 FSG-FVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292
           FSG FV DE++K+RELKL+DALK D QF++KEG SVEVA+YNPPFTLPF  RNEIALEVE
Sbjct: 241 FSGVFVNDEEIKQRELKLQDALKSDSQFKIKEGTSVEVARYNPPFTLPFQCRNEIALEVE 300

Query: 293 RK 294
            K
Sbjct: 301 WK 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462962|ref|XP_004149204.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus] gi|449500911|ref|XP_004161228.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/293 (67%), Positives = 248/293 (84%), Gaps = 7/293 (2%)

Query: 9   SLISPCTLPKTLTLKPTKKPSL----TIINS--ITTNNERKPISAFEARVSLVFALASQT 62
           S  S C+ P ++T + +   S+    T+ NS  + T+  R+ ISA EAR+SLVFALASQ 
Sbjct: 13  SFGSLCSFP-SITRRRSSSTSVVADSTVRNSTDVATSQSRRTISAQEARISLVFALASQA 71

Query: 63  SSLSQRLLMDLATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLSRRGQYEIREVES 122
           S+LSQR+L++LA+ET+KY+ PKRF+S+NLEEALMAVPDLET+KFKVLSRR +YEIREVE 
Sbjct: 72  STLSQRVLLELASETSKYLLPKRFDSRNLEEALMAVPDLETLKFKVLSRRDEYEIREVEP 131

Query: 123 YFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEM 182
           YFIAET MPG++GFDF GAS+SFNVLA YLFGKN  RE MEMTTPV+T + +SDGEKM+ 
Sbjct: 132 YFIAETTMPGKSGFDFGGASQSFNVLAAYLFGKNKAREKMEMTTPVLTSQYKSDGEKMDT 191

Query: 183 TTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDED 242
           TTPVI+K ++ +D+W+MSFV+PSKYG N P+P+D SVRI+EVP+K++AVVAFSGFVTD++
Sbjct: 192 TTPVITKNVDGKDQWKMSFVIPSKYGQNFPVPQDTSVRIQEVPRKILAVVAFSGFVTDDE 251

Query: 243 VKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 295
           VK+RE +LRDALK D++F+VK G+ VEVAQYNPPFTLPF RRNEIALEVE+KE
Sbjct: 252 VKKRESRLRDALKNDKEFQVKAGSFVEVAQYNPPFTLPFQRRNEIALEVEKKE 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829544|ref|XP_002882654.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297328494|gb|EFH58913.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/262 (72%), Positives = 230/262 (87%)

Query: 35  SITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEA 94
           +I    + + +SA E+RVSLVFALASQ SS+SQRLL DLA ETAKYVFPKRF S NLEEA
Sbjct: 56  AIRRQRQSQAVSATESRVSLVFALASQASSVSQRLLADLAVETAKYVFPKRFNSSNLEEA 115

Query: 95  LMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFG 154
           LM+VPDLET++F+V+SR  +YEIR+VE YF+AET MPG TGFDF GAS+SFNVLAEYLFG
Sbjct: 116 LMSVPDLETMEFRVVSRTDKYEIRQVEPYFVAETTMPGETGFDFYGASKSFNVLAEYLFG 175

Query: 155 KNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
           KNT++E MEMTTPV+TRK QS GEKMEMTTPVI+ K +DQ +W+MSFVMPSKYG+NLPLP
Sbjct: 176 KNTRKEKMEMTTPVVTRKAQSVGEKMEMTTPVITTKAKDQTQWRMSFVMPSKYGSNLPLP 235

Query: 215 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
           KD SV+I EVP+K+VAVVAFSG+VTDE+++RRE +LR AL+ D++FRV++G SVEVAQYN
Sbjct: 236 KDSSVKILEVPRKIVAVVAFSGYVTDEEIERREQELRRALQNDKKFRVRDGVSVEVAQYN 295

Query: 275 PPFTLPFTRRNEIALEVERKEE 296
           PPFTLPF RRNE++LEVE KE+
Sbjct: 296 PPFTLPFMRRNEVSLEVESKED 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140257|ref|XP_002323500.1| predicted protein [Populus trichocarpa] gi|222868130|gb|EEF05261.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/262 (73%), Positives = 220/262 (83%), Gaps = 14/262 (5%)

Query: 35  SITTNNERKPISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQNLEEA 94
           +  T+  R+P+SAFEARVSLV ALASQ S  SQRLL DLA ET KY+FPKR  S++LEEA
Sbjct: 6   TTATSPRRRPMSAFEARVSLVLALASQASYQSQRLLFDLANETTKYLFPKRSGSRDLEEA 65

Query: 95  LMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFG 154
           LMAVPDLET+K+KV SR+  YEIRE+E YF+AET M G TGF+F GAS+SFNVLAEYLFG
Sbjct: 66  LMAVPDLETLKYKVSSRKEGYEIRELEPYFVAETTMSGETGFNFYGASQSFNVLAEYLFG 125

Query: 155 KNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
           KNT +E MEMTTPVITRKTQ          PV++K    + KWQMSFV+PSKYGANLPLP
Sbjct: 126 KNTMKEKMEMTTPVITRKTQ----------PVMTK----EGKWQMSFVIPSKYGANLPLP 171

Query: 215 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
           KDP+VR++EVP +VVAVVAFSGFVTDE+VK+RELKLR+ALK D +FRVK+ ASVEVAQYN
Sbjct: 172 KDPTVRVEEVPGRVVAVVAFSGFVTDEEVKQRELKLRNALKKDPEFRVKDSASVEVAQYN 231

Query: 275 PPFTLPFTRRNEIALEVERKEE 296
           PPFTLPFTRRNEIALEVERKEE
Sbjct: 232 PPFTLPFTRRNEIALEVERKEE 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2100043	309	AT3G10130 "AT3G10130" [Arabido	0.891	0.854	0.676	1.1e-92
TAIR|locus:2065578	225	SOUL-1 [Arabidopsis thaliana (	0.628	0.826	0.358	2.8e-18
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.574	0.894	0.314	9e-12
UNIPROTKB|F1NMB9	189	HEBP1 "Heme-binding protein 1"	0.560	0.878	0.300	1.1e-09
UNIPROTKB|Q5ZMB2	189	HEBP1 "Heme-binding protein 1"	0.560	0.878	0.300	1.4e-09
UNIPROTKB|Q5ISC6	189	HEBP1 "Heme-binding protein 1"	0.570	0.894	0.288	1.9e-09
UNIPROTKB|Q6DJ66	190	hebp1 "Heme-binding protein 1"	0.516	0.805	0.258	3.2e-09
UNIPROTKB|Q6NU05	190	hebp1 "Heme-binding protein 1"	0.516	0.805	0.264	8.2e-09
UNIPROTKB|Q9NRV9	189	HEBP1 "Heme-binding protein 1"	0.381	0.597	0.303	4e-07
UNIPROTKB|E2RNV4	189	HEBP1 "Uncharacterized protein	0.570	0.894	0.273	4e-07

TAIR|locus:2100043 AT3G10130 "AT3G10130" [Arabidopsis thaliana (taxid:3702)]

 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 180/266 (67%), Positives = 218/266 (81%)

Query:    33 INSITTNNERKP-ISAFEARVSLVFALASQTSSLSQRLLMDLATETAKYVFPKRFESQ-N 90
             +N       + P +SA E+RVSLV ALASQ SS+SQRLL DLA ETAKYVFPKRF+S  N
Sbjct:    44 VNRAIRRQPQSPAVSATESRVSLVLALASQASSVSQRLLADLAMETAKYVFPKRFDSSTN 103

Query:    91 LEEALMAVPDLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAE 150
             LEEA M+VPDLET+ F+VL R  +YEIR+VE YF+AET+MPG TGFD  GAS+SFNVLAE
Sbjct:   104 LEEAFMSVPDLETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKSFNVLAE 163

Query:   151 YLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGAN 210
             YLFGKNT +E MEMTTPV+TRK QS GEKMEMTTPVI+ K +DQ++W+MSFVMPSKYG+N
Sbjct:   164 YLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKYGSN 223

Query:   211 LPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEV 270
             LPLPKDPSV+I++          FSG+VTDE+++RRE +LR AL+ D++FRV++G S EV
Sbjct:   224 LPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEV 283

Query:   271 AQYNPPFTLPFTRRNEIALEVERKEE 296
             AQYNPPFTLPF RRNE++LEVE KE+
Sbjct:   284 AQYNPPFTLPFMRRNEVSLEVENKED 309

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2065578 SOUL-1 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 76/212 (35%), Positives = 106/212 (50%)

Query:   101 LETVKFKVLSRRGQYEIREVESYFIAE-TMMPGRTGFDFNGASRSFNVLAEYL--FGK-- 155
             +ET K+ V      YEIRE      AE T        D +G    F +LA+Y+  FGK  
Sbjct:    20 VETPKYTVTKSGDGYEIREYPPAVAAEVTYDASEFKGDKDGG---FQLLAKYIGVFGKPE 76

Query:   156 NTKRETMEMTTPVITRKTQS----------DGEKMEMTTPVISKKL--EDQDKW-QMSFV 202
             N K E + MT PVIT++ +           + EK+EMT+PV++K+   E + K   M F+
Sbjct:    77 NEKPEKIAMTAPVITKEGEKIAMTAPVITKESEKIEMTSPVVTKEGGGEGRKKLVTMQFL 136

Query:   203 MPSKY--GANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQF 260
             +PS Y      P P D  V IKE          FSG  ++  V  +  KL   L+ D  F
Sbjct:   137 LPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSEKVKKLSSHLEKDG-F 195

Query:   261 RVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 292
             ++  G  V +A+YNPP+TLP  R NE+ + VE
Sbjct:   196 KIT-GDFV-LARYNPPWTLPPFRTNEVMIPVE 225

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 9.0e-12, P = 9.0e-12
 Identities = 60/191 (31%), Positives = 84/191 (43%)

Query:   101 LETVKFKVLSRRGQ-YEIREVESYFIAETMMPGRTGFDFNGA-SRSFNVLAEYLFGKNTK 158
             L+  K+     +G  YE+R  ++     T++   TG + + A S  F  L +Y+ G N K
Sbjct:    14 LQNPKYTAQESKGDDYEVRTYQATNWVSTVV---TGMEQDQAMSTGFRRLFKYIQGSNEK 70

Query:   159 RETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPS 218
             +  +EMTTPV        G   E T  V             SF +P ++ A+ P P DP 
Sbjct:    71 KSKVEMTTPVSCLIDPGAGPACESTFTV-------------SFYIPEEHQADPPKPTDPD 117

Query:   219 VRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT 278
             V I+           F GF   E      LKL ++LK D   + KE A    A Y+ PF 
Sbjct:   118 VFIESRKELTAFVRTFGGFANSESCCEEILKLIESLKRDGM-KFKE-APYYRAGYDSPFK 175

Query:   279 LPFTRRNEIAL 289
             L   RRNE+ L
Sbjct:   176 LT-GRRNEVWL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NMB9 HEBP1 "Heme-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 58/193 (30%), Positives = 89/193 (46%)

Query:   101 LETVKFKVLSR--RGQ--YEIREVESYFIAETMMPGRTGFDFNGASRSFNV-LAEYLFGK 155
             +ET  ++VLS+  + Q  YE RE E    A   +   TG  F+ AS+   + L +Y+ G 
Sbjct:    13 VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEV---TGKPFDEASKEAALKLLKYVGGS 69

Query:   156 NTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
             N K   M MT PV IT    +DG                Q K ++   +P+++ A+ P P
Sbjct:    70 NDKGTGMGMTAPVSITAFPAADGSL--------------QQKVKVYLRIPNQFQASPPCP 115

Query:   215 KDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
              D S++I+E          F G+  + D      KL+ AL  +  +R K+        Y+
Sbjct:   116 SDESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYR-KDFYFCN--GYD 172

Query:   275 PPFTLPFTRRNEI 287
             PP   P+ RRNE+
Sbjct:   173 PPMK-PYGRRNEV 184

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|Q5ZMB2 HEBP1 "Heme-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 58/193 (30%), Positives = 88/193 (45%)

Query:   101 LETVKFKVLSR--RGQ--YEIREVESYFIAETMMPGRTGFDFNGASRSFNV-LAEYLFGK 155
             +ET  ++VLS+  + Q  YE RE E    A   +   TG  F+ AS+   + L +Y+ G 
Sbjct:    13 VETWPYRVLSKGEKEQLSYEERECEGGQFAVVEV---TGKPFDEASKEAALKLLKYVGGS 69

Query:   156 NTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
             N K   M MT PV IT     DG                Q K ++   +P+++ A+ P P
Sbjct:    70 NDKGAGMGMTAPVSITAFPAEDGSL--------------QQKVKVYLRIPNQFQASPPCP 115

Query:   215 KDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
              D S++I+E          F G+  + D      KL+ AL  +  +R K+        Y+
Sbjct:   116 SDESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLKTALGSEAAYR-KDFYFCN--GYD 172

Query:   275 PPFTLPFTRRNEI 287
             PP   P+ RRNE+
Sbjct:   173 PPMK-PYGRRNEV 184

GO:0005737 "cytoplasm" evidence=IEA

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q5ISC6 HEBP1 "Heme-binding protein 1" [Sus scrofa (taxid:9823)]

 Score = 141 (54.7 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 56/194 (28%), Positives = 87/194 (44%)

Query:   101 LETVKFKVLSRRGQ----YEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKN 156
             +ET  ++VLS+  +    YE R  E    A   M  +   D      +   + +Y+ G N
Sbjct:    13 VETWPWQVLSKGDKQDISYEERACEGGKFATVEMTDKP-VD-EALREAMPKVMKYVGGSN 70

Query:   157 TKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKD 216
              K   M MT P+      SDG  ++       KKL+    W   F +P+++ +N P+P D
Sbjct:    71 DKGIGMGMTVPISFAVFPSDGGSLQ-------KKLK---VW---FRIPNEFQSNPPVPSD 117

Query:   217 PSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ-YNP 275
              S++I+E          F G+  + D   R  +LR AL+G    R    + V     Y+P
Sbjct:   118 DSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCR----SDVYFCTGYDP 173

Query:   276 PFTLPFTRRNEIAL 289
             P   P+ RRNE+ L
Sbjct:   174 PMK-PYGRRNEVWL 186

GO:0020037 "heme binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q6DJ66 hebp1 "Heme-binding protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 139 (54.0 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 45/174 (25%), Positives = 75/174 (43%)

Query:   115 YEIREVESYFIAETMMPGRTGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPVITRKT 173
             +E RE E      T + G+    F+ AS+   + L +Y+ G N K   M MT+PV+    
Sbjct:    31 FEEREYEGGKFVSTEVSGKP---FDEASKEAVLRLLKYVGGSNQKYAGMGMTSPVVITSY 87

Query:   174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXX 233
              ++ E ++    V+ +             +PS+Y A+ P+P D ++ I++          
Sbjct:    88 PAENETLQPNVKVLLR-------------IPSQYQADPPVPTDDTIHIEDRESVTFYSTQ 134

Query:   234 FSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
             F G+  + D      KLR  L  D  +            Y+PP   P+ RRNE+
Sbjct:   135 FGGYAKEADYVSHAAKLRSCLGPDISYHTDH---YMCCGYDPPMK-PYGRRNEV 184

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q6NU05 hebp1 "Heme-binding protein 1" [Xenopus laevis (taxid:8355)]

 Score = 138 (53.6 bits), Expect = 8.2e-09, P = 8.2e-09
 Identities = 46/174 (26%), Positives = 76/174 (43%)

Query:   115 YEIREVESYFIAETMMPGRTGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPVITRKT 173
             +E RE E      T + G+    F+ AS+   + L +Y+ G N K   M MT+PVI    
Sbjct:    31 FEEREYEGGKFISTEVSGKP---FDEASKEGVLRLLKYVGGSNNKSAGMGMTSPVIINSY 87

Query:   174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXX 233
              S+ + ++    V+ +             +PS+Y A+ P+P D +++I++          
Sbjct:    88 PSENDTLQPNVKVLLR-------------IPSQYQADPPVPTDNTIQIEDRESVTLYSTQ 134

Query:   234 FSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
             F G+  + D      KLR  L  D  +            Y+PP   P+ RRNE+
Sbjct:   135 FGGYAKEADYVSHAAKLRSCLGPDISYH---SDYYMCCGYDPPMK-PYGRRNEV 184

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q9NRV9 HEBP1 "Heme-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 37/122 (30%), Positives = 58/122 (47%)

Query:   173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
             T   G  M MT P+      ++D     K ++ F +P+++ ++ P P D SV+I+E    
Sbjct:    69 TNDKGIGMGMTVPISFAVFPNEDGSLQKKLKVWFRIPNQFQSDPPAPSDKSVKIEEREGI 128

Query:   228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
                   F G+  + D   +  +LR AL+G   +R   G       Y+PP   P+ RRNEI
Sbjct:   129 TVYSMQFGGYAKEADYVAQATRLRAALEGTATYR---GDIYFCTGYDPPMK-PYGRRNEI 184

Query:   288 AL 289
              L
Sbjct:   185 WL 186

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0020037 "heme binding" evidence=ISS

GO:0007623 "circadian rhythm" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

UNIPROTKB|E2RNV4 HEBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 53/194 (27%), Positives = 86/194 (44%)

Query:   101 LETVKFKVLSRRGQ----YEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKN 156
             +ET  ++V+S+ G+    YE R  E    A   +  +   D  G   +   + +Y+ G N
Sbjct:    13 VETWPWQVVSQGGKEEVSYEERTCEGGRFATVEVTDKP-VD-EGLREAMPKVMKYVGGTN 70

Query:   157 TKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKD 216
              K   M MT PV       D   ++       KKL+    W   F +P+++ +N P+P D
Sbjct:    71 DKGIGMGMTVPVSFAVFPGDDGSLQ-------KKLK---VW---FRIPNQFQSNPPVPTD 117

Query:   217 PSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ-YNP 275
              S++I+E          F G+  + D      +LR AL+G    R    + +     Y+P
Sbjct:   118 DSIKIEERESITVYSLQFGGYAKEADYVAHAAQLRTALEGTATCR----SDIYFCTGYDP 173

Query:   276 PFTLPFTRRNEIAL 289
             P   P+ RRNE+ L
Sbjct:   174 PMK-PYGRRNEVWL 186

GO:0020037 "heme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SR77	HBPL1_ARATH	No assigned EC number	0.7351	0.8513	0.8155	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	1e-60

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score =  190 bits (484), Expect = 1e-60
 Identities = 77/192 (40%), Positives = 100/192 (52%), Gaps = 20/192 (10%)

Query: 100 DLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGKNTK 158
            +ET  + VL R G YEIR  E    AET +        + AS   F  LA Y+FGKN  
Sbjct: 1   AVETPPYTVLEREGDYEIRRYEPMVWAETEVDAG---SRDEASGEGFRRLAGYIFGKNRS 57

Query: 159 RETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY-GANLPLPKDP 217
            E + MT PV+        + + MT        E    W +SFVMPS Y    LP P DP
Sbjct: 58  GEKIAMTAPVLQ-------QAIPMTADE-----EGSGAWTVSFVMPSGYQAETLPAPLDP 105

Query: 218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPF 277
            VRI+EVP + VAV+ FSG  ++EDV  +  +LR  L+ D    +K      +A YNPP+
Sbjct: 106 DVRIREVPARTVAVIRFSGRASEEDVAEKAAELRAWLEAD---GLKPRGEPFLAGYNPPW 162

Query: 278 TLPFTRRNEIAL 289
           T PF RRNE+ +
Sbjct: 163 TPPFLRRNEVWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	96.9
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	96.82
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	93.69
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	92.62
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	91.56
PRK10016	156	DNA gyrase inhibitor; Provisional	90.91
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	87.68

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=4.1e-53  Score=370.10  Aligned_cols=175  Identities=42%  Similarity=0.647  Sum_probs=136.4

Q ss_pred             CcCCCCeEEEEecCCeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcc
Q 022505          100 DLETVKFKVLSRRGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEK  179 (296)
Q Consensus       100 ~~EcP~Y~Vl~~~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~k  179 (296)
                      ++|||+|+||++.++||||+|++++||+|++.+++.  ..|...||++|++||+|+|+++++|+||+||++++.      
T Consensus         1 ~~E~P~Y~v~~~~~~~EiR~Y~~~~w~~t~~~~~~~--~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~------   72 (176)
T PF04832_consen    1 DIECPPYEVLKKGDDYEIRRYPPAKWASTTVSGCSF--EEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVI------   72 (176)
T ss_dssp             --BS-SEEEECCCSSCEEEEE--CEEEEEEEECS-H--HHHHHHHHHHHHHHHCT-CTT------BS-EEEEEE------
T ss_pred             CCcCCCeEEEEeCCCEEEEEECCceEEEEEecCCCh--hHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEE------
Confidence            579999999999999999999999999999986442  236778999999999999999999999999999873      


Q ss_pred             cccccccccccccCCCeEEEEEEeecCCC-CCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC
Q 022505          180 MEMTTPVISKKLEDQDKWQMSFVMPSKYG-ANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR  258 (296)
Q Consensus       180 i~mT~Pv~~~~~~~~~~~tmsF~LP~~yq-~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g  258 (296)
                       +|++.      .|++.++|+|+||.+|| ++||+|+|++|+|+++|+.++||++|+|+++++++.+++++|+++|+++|
T Consensus        73 -~~~~~------~~~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g  145 (176)
T PF04832_consen   73 -PMTAE------SCEKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDG  145 (176)
T ss_dssp             -ETTTT------TCECEEEEEEE--HHHC-TS---BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTT
T ss_pred             -cCCCc------ccCCcEEEEEEcCcccccccCCCCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcC
Confidence             23331      25789999999999999 89999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022505          259 QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       259 ~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~  292 (296)
                      +.   +.+.+++|+||+||+++++|||||||+||
T Consensus       146 ~~---~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  146 LK---DKGYYYVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             HH---CCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred             CC---cCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence            63   67899999999998889999999999986

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=96.90  E-value=0.12  Score=43.94  Aligned_cols=152  Identities=17%  Similarity=0.189  Sum_probs=95.3

Q ss_pred             CeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022505          114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  193 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~~  193 (296)
                      +++|+..++...+.....|...   +...++|.+|+.++..+|-.     .+ +.+..... +        |-.+..  .
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~---~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~D-~--------p~~~~~--~   61 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWE---QTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYYD-N--------PDEVPA--E   61 (156)
T ss_pred             ceEEEEccCceEEEEEeecCch---hHHHHHHHHHHHHHHHcCCC-----CC-cEEEEECC-C--------CCCCCh--H
Confidence            4789999999999988777421   22467999999999665532     12 33332221 1        211111  1


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHH-HHHHHhcCCCcceecCCcEEEEE
Q 022505          194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK-LRDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       194 ~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~-L~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      +-.+-++.-+|....  .| +.+..+.+..+|+.++||..+.|.  -+.+.+.-.. +.+||.++|.. . .++. .+-.
T Consensus        62 ~~R~d~~i~v~~~~~--~~-~~~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~-~-~~~p-~~E~  133 (156)
T PRK10016         62 KLRCDTVVTVPDDFV--LP-ENSEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ-M-APKP-CFEV  133 (156)
T ss_pred             HceeeEEEEeCCCcc--cC-CCCCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc-c-CCCC-CEEE
Confidence            113778889987542  22 223479999999999999999995  4457776666 77899999963 2 2232 2333


Q ss_pred             e-CCCCCCCCCCceeEEEEeecc
Q 022505          273 Y-NPPFTLPFTRRNEIALEVERK  294 (296)
Q Consensus       273 Y-dpP~tlp~~RrNEVwi~v~~~  294 (296)
                      | +.|... -.-.-||||+|+.+
T Consensus       134 Y~~~~~~~-~~~~tei~iPI~~~  155 (156)
T PRK10016        134 YLNDGAED-GYWDIEMYVPVQKK  155 (156)
T ss_pred             eCCCCCCC-CcEEEEEEEEeEEC
Confidence            4 344433 22246999999853

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=96.82  E-value=0.072  Score=42.87  Aligned_cols=152  Identities=14%  Similarity=0.136  Sum_probs=95.6

Q ss_pred             CeEEEEeCCceEEEEEcCCCCCcCcch-hhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022505          114 QYEIREVESYFIAETMMPGRTGFDFNG-ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE  192 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a-~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~  192 (296)
                      +++|+.-++...+.....+...  ..+ ....+.+|..++.-.+...    ...+.+..........     +      .
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~--~~~~i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~~-----~------~   64 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYE--EEDSIPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNIT-----D------D   64 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHH--HHHHHHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTSS-----T------G
T ss_pred             CcEEEEECCEEEEEEEEEECCc--hhhhHHHHHHHHHHHHHHhhccc----CCCcceeEEecccccc-----C------C
Confidence            5788888998888877655211  011 3467888888884322111    4555555443221100     0      0


Q ss_pred             CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHH-HHhcCCCcceecCCcEEEE
Q 022505          193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD-ALKGDRQFRVKEGASVEVA  271 (296)
Q Consensus       193 ~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~-~L~~~g~~~v~~~~~~~~A  271 (296)
                      ..-.+.+++.++...      +...++....+|+..+++..|.|-.  +.+.+....|.. ||.++|+.  ...+..+--
T Consensus        65 ~~~~~~~~~~~~~~~------~~~~~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~--~~~~~~~E~  134 (155)
T PF06445_consen   65 EEFRYDIGVEVDEDV------PNPDGMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE--RRDGPDFEI  134 (155)
T ss_dssp             CEEEEEEEEEECTTC------SGCTTSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE--EESSEEEEE
T ss_pred             cceEEEEEEEEcccc------cCCceEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc--cCCCCcEEE
Confidence            122445555555433      4457889999999999999999977  778889999999 99999973  233443444


Q ss_pred             EeCCCCCCCCCCceeEEEEee
Q 022505          272 QYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       272 ~YdpP~tlp~~RrNEVwi~v~  292 (296)
                      .++.|+..+-.-.-||||+|+
T Consensus       135 y~~~~~~~~~~~~~ei~iPik  155 (155)
T PF06445_consen  135 YLNDPDTDEEEYVTEIYIPIK  155 (155)
T ss_dssp             EESSTTTTSCGEEEEEEEEEE
T ss_pred             ECCCCCCCCCceEEEEEEEEC
Confidence            445555333467779999986

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=93.69  E-value=2.9  Score=36.68  Aligned_cols=146  Identities=16%  Similarity=0.146  Sum_probs=90.8

Q ss_pred             CeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022505          114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  193 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~~  193 (296)
                      ++||+..++..+|.-.-.|.    ..-..++|.+|+.|-.-++--.    -+ .....+..++.        -.+..  .
T Consensus         2 dv~I~e~p~~~VA~~rh~G~----~~~~~~~~~~l~~W~~~~~l~p----~~-S~~~gI~~ddP--------~~Tp~--e   62 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVGD----PATLKQTFEQLIAWRRENGLLP----EQ-SETLGIYQDDP--------DTTPA--E   62 (154)
T ss_pred             CceEEecCCceEEEEEeeCc----HHHHHHHHHHHHHHHHHcCCCC----CC-ceEEEEecCCC--------CCCCH--H
Confidence            78999999999998887662    1234689999999996655321    12 23333433332        11111  1


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHH-HHHHHHHhcCCCcceecCCcEEEEE
Q 022505          194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRE-LKLRDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       194 ~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~-~~L~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      +=.|-.+..+|...     .+++..|..-+.|+..+||.+|.|..  +++.+-. .-+.+||...|+.   ..+.+.+.+
T Consensus        63 ~~R~D~cv~v~~~~-----~~n~~~v~~~~i~GG~YAV~r~~~~~--d~~~~aw~~if~ewlp~Sg~~---~~d~P~~e~  132 (154)
T COG3449          63 KCRYDACVVVPEPI-----PENSEGVQLGEIPGGLYAVARFRGTA--DDLAKAWGYIFGEWLPASGYE---PRDRPILER  132 (154)
T ss_pred             HceeeEEEEcCCcc-----CCCCCceeEeeecCCceEEEEEeccH--HHHHHHHHHHHhhhccccCcc---cCCCchHHH
Confidence            23567778887322     23567899999999999999999954  3344444 4456777777753   455667777


Q ss_pred             eCCCCCCCCCCceeEEEE
Q 022505          273 YNPPFTLPFTRRNEIALE  290 (296)
Q Consensus       273 YdpP~tlp~~RrNEVwi~  290 (296)
                      |=.....  .-..|+.+.
T Consensus       133 y~n~~~~--~~~~e~~vd  148 (154)
T COG3449         133 YLNFPAE--DPEHEIEVD  148 (154)
T ss_pred             HhccCCC--CcceeEEEE
Confidence            7333332  234444444

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=92.62  E-value=4.4  Score=32.37  Aligned_cols=156  Identities=12%  Similarity=0.113  Sum_probs=84.4

Q ss_pred             eEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccCC
Q 022505          115 YEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQ  194 (296)
Q Consensus       115 yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~~~  194 (296)
                      +++..-++...+.....+... + ....+.|.+|+.++...+.......  .+++........         ..  ....
T Consensus         2 ~~i~~~~~~~v~~~~~~~~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~--~~~~   66 (158)
T smart00871        2 VRIVELPAFKVAGLRHRGPYE-E-EKIPELWQRLIAWAKELGLLPIGPS--GPPYGVYYDDPD---------DT--PEGE   66 (158)
T ss_pred             CEEEEcCCceEEEEEeecCcc-c-ccHHHHHHHHHHHHHHcCCCCCCCC--ccEEEEECCCCC---------CC--ChhH
Confidence            344455555565555544221 0 1234678888888865543322211  233332211111         00  0011


Q ss_pred             CeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeC
Q 022505          195 DKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN  274 (296)
Q Consensus       195 ~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~Yd  274 (296)
                      -.+.+++.++...  .    ....+.+..+|+..+++..|.| ...+.+.+-..+|..++..+|.....+.+..+--.++
T Consensus        67 ~~~~~g~~v~~~~--~----~~~~~~~~~~p~~~y~~~~~~g-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~y~~  139 (158)
T smart00871       67 FRYDAGVEVSDEV--E----NPEGVETKEIPAGKYAVFTHKG-GSYDEIQETWEAIYGEWLPNSGYELRDAGPDFEIYLN  139 (158)
T ss_pred             eEEEEEEEeCCCC--C----CCCCceEEEECCCcEEEEEEcC-CCHHHHHHHHHHHHHhhcccCCCccCcCCceEEEEeC
Confidence            2344555555421  1    1246889999999999999999 3467789999999999988875422122333333345


Q ss_pred             CCCC-CCCCCceeEEEEee
Q 022505          275 PPFT-LPFTRRNEIALEVE  292 (296)
Q Consensus       275 pP~t-lp~~RrNEVwi~v~  292 (296)
                      .|.. .+-...-|++|+|+
T Consensus       140 ~~~~~~~~~~~~ei~ipv~  158 (158)
T smart00871      140 DPADTDPEELVTEIYIPIK  158 (158)
T ss_pred             CCCCCChhHeEEEEEEEcC
Confidence            5532 22245678998874

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=91.56  E-value=0.76  Score=40.24  Aligned_cols=58  Identities=21%  Similarity=0.142  Sum_probs=48.5

Q ss_pred             CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCC
Q 022505          218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTL  279 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP~tl  279 (296)
                      +|.|++.|+..||..+-.|  ....+.+-.++|.+|.+++|+.  ...+....-.||.|-+.
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~--p~~S~~~gI~~ddP~~T   59 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLL--PEQSETLGIYQDDPDTT   59 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCC--CCCceEEEEecCCCCCC
Confidence            6999999999999999999  7888999999999999999985  23455666677888643

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=90.91  E-value=1.6  Score=36.96  Aligned_cols=68  Identities=18%  Similarity=0.140  Sum_probs=50.7

Q ss_pred             CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCC--CCCCCCCceeEEEEe
Q 022505          218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPP--FTLPFTRRNEIALEV  291 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP--~tlp~~RrNEVwi~v  291 (296)
                      +|.|+++|+..++.++..|...+ .+.+...+|.+++.++|+.   .. .+....||.|  ... -.-|-+|.|.+
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~---~~-~~~~i~~D~p~~~~~-~~~R~d~~i~v   71 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV---PK-EWVAVYYDNPDEVPA-EKLRCDTVVTV   71 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC---CC-cEEEEECCCCCCCCh-HHceeeEEEEe
Confidence            58999999999999999996643 4778889999999999974   23 3677888999  443 23244455444

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=87.68  E-value=1.8  Score=34.52  Aligned_cols=72  Identities=21%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             CeEEEEecCeEEEEEEeCCcCChHH-HHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022505          218 SVRIKEVPKKVVAVVAFSGFVTDED-VKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~FsG~~t~~~-~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~  292 (296)
                      +|+|+++|+.+++..+..|-..+.. +.+..++|.+++...++.  .....++...||.|... ......+++-+.
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~   74 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS--TDPGPIIGIYYDNPNIT-DDEEFRYDIGVE   74 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC--CSSSSEEEEEEECCTSS-TGCEEEEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc--cCCCcceeEEecccccc-CCcceEEEEEEE
Confidence            5899999999999999999887777 899999999999998753  14556777788888543 356666655544

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
2hva_A	192	Solution Structure Of The Haem-Binding Protein P22h		1e-07
4a1m_A	195	Nmr Structure Of Protoporphyrin-Ix Bound Murine P22		1e-07
2gov_A	195	Solution Structure Of Murine P22hbp Length = 195		1e-07
4b0y_A	227	Determination Of X-Ray Structure Of Human Soul By M		6e-04
3r8j_A	212	Crystal Structure Of Human Soul Protein (Orthorhomb		7e-04

>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 71  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 130
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 131 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 187
Query: 288 AL 289
            L
Sbjct: 188 WL 189

>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp Length = 195

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 74  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 288 AL 289
            L
Sbjct: 191 WL 192

>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp Length = 195

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 173 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 227
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 74  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 228 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 287
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 288 AL 289
            L
Sbjct: 191 WL 192

>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By Molecular Replacement Length = 227

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 113 GQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 171
           G YEIR    Y  A+ +       D++ A ++ F  L  Y+ GKN K   ++MT PV + 
Sbjct: 58  GSYEIRH---YGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 114
Query: 172 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXX 231
                G   E T  +             S  +PS+   + P P +  V I++        
Sbjct: 115 VEPGSGPFSESTITI-------------SLYIPSEQQFDPPRPLESDVFIEDRAEMTVFV 161
Query: 232 XXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 289
             F GF + +  + + L L   L+ D   +V +      A YN P  L   R NE+ L
Sbjct: 162 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 216

>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic Form) Length = 212

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 113 GQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITR 171
           G YEIR    Y  A+ +       D++ A ++ F  L  Y+ GKN K   ++MT PV + 
Sbjct: 39  GSYEIRH---YGPAKWVSTSVESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSY 95
Query: 172 KTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXX 231
                G   E T               +S  +PS+   + P P +  V I++        
Sbjct: 96  VEPGSGPFSESTI-------------TISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFV 142
Query: 232 XXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 289
             F GF + +  + + L L   L+ D   +V +      A YN P  L   R NE+ L
Sbjct: 143 RSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYNSPVKL-LNRNNEVWL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	3e-36
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	2e-35
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	2e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score =  128 bits (322), Expect = 3e-36
 Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 25/229 (10%)

Query: 73  LATETAKYVFPKRFESQNLEEALMAVPDLETVKFKVLS----RRGQYEIREVESYFIAET 128
              + A  +           E   A   +ET  +K       + G YEIR         T
Sbjct: 15  SLYKKAGTMAEPLQPDPGAAEDAAA-QAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVST 73

Query: 129 MMPGRTGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVI 187
            +      D++ A ++ F  L  Y+ GKN K   ++MT PV +      G   E      
Sbjct: 74  SV---ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSES----- 125

Query: 188 SKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRE 247
                      +S  +PS+   + P P +  V I++  +  V V +F GF + +  + + 
Sbjct: 126 --------TITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQL 177

Query: 248 LKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 296
           L L   L+ D   +V +      A YN P      R NE+ L  + +  
Sbjct: 178 LTLASILREDG--KVFDEKVYYTAGYNSPVK-LLNRNNEVWLIQKNEPT 223

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score =  125 bits (314), Expect = 2e-35
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 24/194 (12%)

Query: 101 LETVKFKVLSRRGQ----YEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFGK 155
           +ET  ++VLS  G+    YE R  E    A   +  +     + A R     + +Y+ G 
Sbjct: 18  VETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDK---PVDEALREAMPKIMKYVGGT 74

Query: 156 NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
           N K   M MT PV      ++   ++              K ++ F +P+++  + P P 
Sbjct: 75  NDKGVGMGMTVPVSFAVFPNEDGSLQK-------------KLKVWFRIPNQFQGSPPAPS 121

Query: 216 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 275
           D SV+I+E     V    F G+  + D      +LR  L+G       +G     A Y+P
Sbjct: 122 DESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP--ATYQGDVYYCAGYDP 179

Query: 276 PFTLPFTRRNEIAL 289
           P   P+ RRNE+ L
Sbjct: 180 PMK-PYGRRNEVWL 192

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score =  121 bits (303), Expect = 2e-33
 Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 24/202 (11%)

Query: 100 DLETVKFKVLS----RRGQYEIREVESYFIAETMMPGRTGFDFNGASRS-FNVLAEYLFG 154
            +ET  +K       + G YEIR         T +      D++ A ++ F  L  Y+ G
Sbjct: 22  AVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESM---DWDSAIQTGFTKLNSYIQG 78

Query: 155 KNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP 214
           KN K   ++MT PV +      G   E                 +S  +PS+   + P P
Sbjct: 79  KNEKEMKIKMTAPVTSYVEPGSGPFSES-------------TITISLYIPSEQQFDPPRP 125

Query: 215 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYN 274
            +  V I++  +  V V +F GF + +  + + L L   L+ D   +V +      A YN
Sbjct: 126 LESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDG--KVFDEKVYYTAGYN 183

Query: 275 PPFTLPFTRRNEIALEVERKEE 296
            P      R NE+ L  + +  
Sbjct: 184 SPVK-LLNRNNEVWLIQKNEPT 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 4e-08
 Identities = 41/297 (13%), Positives = 93/297 (31%), Gaps = 83/297 (27%)

Query: 36  ITTNNERKPISAFEARVSLVFALASQTSSLSQRLL-MDLATETAKYVFPKRFESQNLEEA 94
           +   N   P +  E    L++ +    +S S     + L   + +    +  +S+  E  
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 95  LMA---VPDLETVK-F----KVL--SRRGQYEIREVESYFIAETMMPGRTGFDFNGASRS 144
           L+    V + +    F    K+L  +R      ++V                DF  A+ +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRF-----KQV---------------TDFLSAATT 286

Query: 145 FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTP----VISKKLEDQ----DK 196
            ++  ++     T  E   +    +  + Q    ++  T P    +I++ + D     D 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 197 W------QMSFVMPSKYGANLP-------------LPKDPSVRIKEVPKKVVAVV----- 232
           W      +++ ++ S     L               P      I   P  +++++     
Sbjct: 347 WKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPS--AHI---PTILLSLIWFDVI 400

Query: 233 -AFSGFVTDEDVKRRELKLRDALKG-----DRQFRVKEGASVE-------VAQYNPP 276
            +    V ++  K   ++ +   +           +K     E       V  YN P
Sbjct: 401 KSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	98.2
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	98.15
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	96.48
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	96.19
3lur_A	158	Putative bacterial transcription regulation prote;	91.68
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	89.16
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	85.82
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	81.28

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=2.7e-53  Score=377.31  Aligned_cols=177  Identities=28%  Similarity=0.390  Sum_probs=159.5

Q ss_pred             CCCcCCCCeEEEEecCC----eEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEee
Q 022505           98 VPDLETVKFKVLSRRGQ----YEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT  173 (296)
Q Consensus        98 ~~~~EcP~Y~Vl~~~~~----yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~  173 (296)
                      |++.|||+|+||++.++    ||||+|+++.||+|++.+.+.  .+|...||++|++||+|+|.++++|+||+||++++.
T Consensus        15 ~~~~E~P~Y~Vl~~~~~~~~~yEiR~Y~~~~wa~t~~~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~   92 (195)
T 2gov_A           15 FGSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVF   92 (195)
T ss_dssp             CCSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEE
T ss_pred             cCCCCCCCeEEEEecCCCCCcEEEEEeCCeEEEEEEecCCCh--hHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEEc
Confidence            67899999999999887    999999999999999976432  246678999999999999999999999999999876


Q ss_pred             cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022505          174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA  253 (296)
Q Consensus       174 ~~~g~ki~mT~Pv~~~~~~~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~  253 (296)
                      ++++       |.      |++.|+|+|+||++||++||+|+|++|+|+++|+++|||++|+|++++.++.+++++|+++
T Consensus        93 p~~~-------~~------~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~  159 (195)
T 2gov_A           93 PNED-------GS------LQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTT  159 (195)
T ss_dssp             ECTT-------SC------EEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             CCCC-------CC------cCceEEEEEEcchhcccCCCCCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHH
Confidence            6543       32      3568999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022505          254 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       254 L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~  292 (296)
                      |+++|+.  ..++.|++|+||+||++ ++|||||||..+
T Consensus       160 L~~~g~~--~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~~  195 (195)
T 2gov_A          160 LEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVKA  195 (195)
T ss_dssp             TTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEEC
T ss_pred             HHHCCCc--ccCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence            9999975  24567899999999998 999999999863

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=4.3e-53  Score=380.82  Aligned_cols=179  Identities=26%  Similarity=0.379  Sum_probs=160.6

Q ss_pred             CCCcCCCCeEEEEe----cCCeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEee
Q 022505           98 VPDLETVKFKVLSR----RGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKT  173 (296)
Q Consensus        98 ~~~~EcP~Y~Vl~~----~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~  173 (296)
                      ++++|||+|+||++    .++||||+|+++.||+|++.+.+.  .+|...||++|++||+|+|.++++|+||+||++++.
T Consensus        20 ~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~   97 (212)
T 3r8j_A           20 AQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVE   97 (212)
T ss_dssp             --CCBCCCEECCSSCCCCCTTCEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEE
T ss_pred             cCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEe
Confidence            56899999999999    899999999999999999976321  135678999999999999999999999999999987


Q ss_pred             cCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022505          174 QSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA  253 (296)
Q Consensus       174 ~~~g~ki~mT~Pv~~~~~~~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~  253 (296)
                      ++++       |.      +++.|+|+|+||.+||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++|+++
T Consensus        98 p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~  164 (212)
T 3r8j_A           98 PGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASI  164 (212)
T ss_dssp             CTTS-------TT------SCEEEEEEEECCHHHHSSCCCBSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred             cCCC-------cc------cCceEEEEEEcChHHccCCCCCCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence            7654       33      3679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeecc
Q 022505          254 LKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK  294 (296)
Q Consensus       254 L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~~~  294 (296)
                      |+++|+.  ..++.|++|+||+||++ |+|||||||.++.+
T Consensus       165 L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e  202 (212)
T 3r8j_A          165 LREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE  202 (212)
T ss_dssp             HHHTTCC--BCSSCEEEEESSSSSCC-SSSCEEEEEEBCC-
T ss_pred             HHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEeCCC
Confidence            9999974  25677899999999997 99999999998853

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=5.4e-53  Score=383.66  Aligned_cols=182  Identities=26%  Similarity=0.366  Sum_probs=154.5

Q ss_pred             hhc-CCCcCCCCeEEEEe----cCCeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceE
Q 022505           95 LMA-VPDLETVKFKVLSR----RGQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVI  169 (296)
Q Consensus        95 ~~~-~~~~EcP~Y~Vl~~----~~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~  169 (296)
                      +.+ +++.|||+|+||++    .++||||+|+++.||+|++.+.+.  .+|...||++|++||+|+|.++++|+||+||+
T Consensus        35 ~~~~~~~~E~P~Y~vl~~~~~~~~~yEiR~Y~~~~wast~v~~~~~--~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~  112 (227)
T 4b0y_A           35 EDAAAQAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSVESMDW--DSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVT  112 (227)
T ss_dssp             ------CCBCCCEECCC------CCSEEEEECCEEEEEEEEEESCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEE
T ss_pred             cccccCCCCCCCeEEEEecccCCCCEEEEEcCCceEEEEEEeCCCH--HHHHHHHHHHHHHHhhcCCCCCCccccccCEE
Confidence            445 68999999999999    899999999999999999976321  13567899999999999999999999999999


Q ss_pred             EEeecCCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHH
Q 022505          170 TRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK  249 (296)
Q Consensus       170 t~~~~~~g~ki~mT~Pv~~~~~~~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~  249 (296)
                      +++.++++       |.      +++.|+|+|+||.+||++||+|+|++|+|+++|+++|||++|+|+++++++.+++++
T Consensus       113 t~~~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~  179 (227)
T 4b0y_A          113 SYVEPGSG-------PF------SESTITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLT  179 (227)
T ss_dssp             EEEECCC---------C------CCEEEEEEEECCGGGSSSCCCBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHH
T ss_pred             EEEecCCC-------cc------cCceEEEEEEcChhhccCCCCCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHH
Confidence            99877654       33      367999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeecc
Q 022505          250 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK  294 (296)
Q Consensus       250 L~~~L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~~~  294 (296)
                      |+++|+++|+.  ..++.|++|+||+||++ |+|||||||.++.+
T Consensus       180 L~~~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~e  221 (227)
T 4b0y_A          180 LASILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKNE  221 (227)
T ss_dssp             HHHHHHHHTCC--BCSSCEEEEECC---CC-CSSCEEEEEEBC--
T ss_pred             HHHHHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEECCC
Confidence            99999999974  25677899999999997 99999999998754

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=98.20  E-value=2.6e-05  Score=61.75  Aligned_cols=153  Identities=16%  Similarity=0.133  Sum_probs=98.2

Q ss_pred             CeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022505          114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  193 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~~  193 (296)
                      +++|+.+++...+.....|..  + +.....|.+|++++...|-..      .+.+.... .+        |..+.  ..
T Consensus         2 ~~~i~~~~~~~v~~~~~~g~~--~-~~i~~~~~~l~~~~~~~~~~~------~~~~gi~~-~~--------~~~~~--~~   61 (157)
T 1jyh_A            2 NYEIKQEEKRTVAGFHLVGPW--E-QTVKKGFEQLMMWVDSKNIVP------KEWVAVYY-DN--------PDETP--AE   61 (157)
T ss_dssp             CCEEEEECCEEEEEEEEESCH--H-HHHHHHHHHHHHHHHHTTCCC------SEEEEEEC-SC--------TTTSC--GG
T ss_pred             CCEEEEeCCeEEEEEEEECCc--h-hhHHHHHHHHHHHHHHcCCCC------CcEEEEEC-CC--------CCCCC--HH
Confidence            478999999999888776521  1 123578999999997655321      24432211 11        11110  01


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEE
Q 022505          194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       194 ~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      .-.+.+++.+|....  +| |.++.+.+.++|+.++||..|.|...  .+.+.-.+|. +||.++|+.   ..+.+.+-.
T Consensus        62 ~~~~~~~~~v~~~~~--~~-~~~~~~~~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---~~~~~~~E~  133 (157)
T 1jyh_A           62 KLRCDTVVTVPGYFT--LP-ENSEGVILTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---MLPKPCFEV  133 (157)
T ss_dssp             GCEEEEEEEECTTCC--CC-SSCTTCEEEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---ECSSCEEEE
T ss_pred             HheEEEEEEecCccc--cC-CCCCCeEEEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---cCCCceEEE
Confidence            236778888886543  22 44678999999999999999999763  3667777785 999999852   233345566


Q ss_pred             eC-CCCCCCCCCceeEEEEeeccC
Q 022505          273 YN-PPFTLPFTRRNEIALEVERKE  295 (296)
Q Consensus       273 Yd-pP~tlp~~RrNEVwi~v~~~~  295 (296)
                      |. .|.. +-..+.||||+|+.++
T Consensus       134 Y~~~~~~-~~~~~tei~ipi~~~~  156 (157)
T 1jyh_A          134 YLNNGAE-DGYWDIEMYVAVQPKH  156 (157)
T ss_dssp             ECSCHHH-HSSEEEEEEEEEEEC-
T ss_pred             ecCCCCC-cccEEEEEEEEeeeCC
Confidence            72 3333 3456779999998764

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=98.15  E-value=7.9e-05  Score=61.16  Aligned_cols=148  Identities=11%  Similarity=0.075  Sum_probs=97.9

Q ss_pred             CeEEEEeCCceEEEEEcCCCCCcCcc-hhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022505          114 QYEIREVESYFIAETMMPGRTGFDFN-GASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE  192 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~-a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~  192 (296)
                      +++|+..++...|.....+.. .+.. ...+.|.+|+.++..+|-     ..+.|.+......+.               
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~-~~~~~~i~~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~~---------------   66 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTM-SELGSLFEAGYHDILQLLAGQGK-----SPSGPPFARYFGMSA---------------   66 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECH-HHHHHHHHHHHHHHHHHHHHTTC-----CCSSCCEEEEESCTT---------------
T ss_pred             ccEEEeeCCceEEEEEeecCH-HHHHHHHHHHHHHHHHHHHHcCC-----CCCCCeEEEEecCCC---------------
Confidence            678999999999888766531 1111 113568899999876542     335555544332110               


Q ss_pred             CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEE
Q 022505          193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       193 ~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      .+-.+.+++-++..      .+.+..|.+..+|+.++|+..+.|-..+  +.+.-++|.+||.++|+. . . +..+-..
T Consensus        67 ~~~~~~~~~~v~~~------~~~~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~-~-~-~~~~E~Y  135 (158)
T 3e0h_A           67 GTFEVEFGFPVEGG------VEGSGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD-L-S-GEAYEIY  135 (158)
T ss_dssp             SCEEEEEEEECCSC------CCCBTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC-E-E-EEEEEEE
T ss_pred             cceEEEEEEEeCCC------CCCCCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC-c-C-CCEEEEE
Confidence            12244555555432      1234689999999999999999997653  788888999999999964 2 2 3444444


Q ss_pred             eCCCCC-CCCCCceeEEEEeec
Q 022505          273 YNPPFT-LPFTRRNEIALEVER  293 (296)
Q Consensus       273 YdpP~t-lp~~RrNEVwi~v~~  293 (296)
                      +|.|.. .+-..+.||||+|+.
T Consensus       136 ~~~p~~~~~~~~~tei~ipv~~  157 (158)
T 3e0h_A          136 LDNPAETAPDQLRTRVSLMLHE  157 (158)
T ss_dssp             CSCTTSSCGGGCEEEEEEEECC
T ss_pred             eCCCCCCCHHHhEEEEEEEEcC
Confidence            577764 445779999999974

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=96.48  E-value=0.098  Score=46.61  Aligned_cols=151  Identities=14%  Similarity=0.062  Sum_probs=92.3

Q ss_pred             CCeEEEEeCCceEEEEEc-CCCCCcCcchh-hHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccc
Q 022505          113 GQYEIREVESYFIAETMM-PGRTGFDFNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKK  190 (296)
Q Consensus       113 ~~yEiR~Y~~~~wasT~v-~g~s~~~~~a~-~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~  190 (296)
                      .+++|+..++...+.... .+.    .... ...|.+|..++...+     +..+.|+.......+     ++ +    .
T Consensus       122 ~~v~I~~~p~~~v~~~~~~~~~----~~~i~~~~~~~l~~~~~~~~-----l~~~~~~g~~~~~~~-----~~-~----~  182 (278)
T 1r8e_A          122 GEVFVLDEEEIRIIQTEAEGIG----PENVLNASYSKLKKFIESAD-----GFTNNSYGATFSFQP-----YT-S----I  182 (278)
T ss_dssp             TCCEEEEECCEEEEEEECTTCC----TTTCCGGGGHHHHHHHHHHH-----SSCCCCEEEEECCCC-----CS-C----G
T ss_pred             CceEEEEcCCeEEEEeecCCCC----hHhHHHHHHHHHHHHHHHcC-----CcccCceEEEEEhHH-----hh-c----C
Confidence            468899999998887765 331    1222 467899999995543     334557654432211     00 0    0


Q ss_pred             ccCCCeE-EEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEE
Q 022505          191 LEDQDKW-QMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVE  269 (296)
Q Consensus       191 ~~~~~~~-tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~  269 (296)
                        ....| .+++.++...   .|.|.+..|.+..+|+..+++..+.|..  +.+.+....|.+||.++|+. +  .+..+
T Consensus       183 --~~~~~~~~~v~v~~~~---~~l~~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~-~--~g~~~  252 (278)
T 1r8e_A          183 --DEMTYRHIFTPVLTNK---QISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDVY  252 (278)
T ss_dssp             --GGCCCSEEEEECCCCS---CCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEEE
T ss_pred             --CCcceeEEEEEecCcc---ccccccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc-c--CCCeE
Confidence              01112 2344443321   1123456799999999999999999955  45677788899999999963 2  23344


Q ss_pred             EEEeCCCCCC--CCCCceeEEEEee
Q 022505          270 VAQYNPPFTL--PFTRRNEIALEVE  292 (296)
Q Consensus       270 ~A~YdpP~tl--p~~RrNEVwi~v~  292 (296)
                      --.++.|+..  +-.-.-||||+|+
T Consensus       253 E~y~~~~~~~~~~~~~~teI~iPv~  277 (278)
T 1r8e_A          253 ELIIPIHYSPKKQEEYRVEMKIRIA  277 (278)
T ss_dssp             EEEEESCCCSSSCCCEEEEEEEEEC
T ss_pred             EEEeecccccCChhheEEEEEEEec
Confidence            4445566543  2244679999986

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=96.19  E-value=0.11  Score=44.86  Aligned_cols=165  Identities=10%  Similarity=0.013  Sum_probs=96.7

Q ss_pred             CeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhh------ccCCCCCcc-cCCC-cceEEEeecCCCcccccccc
Q 022505          114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYL------FGKNTKRET-MEMT-TPVITRKTQSDGEKMEMTTP  185 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI------~G~N~~~~k-I~MT-aPV~t~~~~~~g~ki~mT~P  185 (296)
                      +++|+.-++...+.....|... + ....++|.+|+..+      ..++-.... -..+ .|...-....+        |
T Consensus        24 ~v~i~~~p~~~v~~i~~~g~~~-~-~~~~~~~~~L~~~~~~ik~~~~~~~~~~g~~~y~v~~~~gi~~~d~--------~   93 (211)
T 3b49_A           24 KPERIFVPEMNFLMVDGKGDPD-G-EEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEG--------K   93 (211)
T ss_dssp             SCEEEEEEEEEEEEEEEESCTT-S-HHHHHHHHHHHHHHHHHHHGGGSCCTTTTSCCBCCCCCEEEEEESS--------S
T ss_pred             CcEEEEECCeeEEEEEeecCCC-H-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccceeccceeEEeecCC--------c
Confidence            5788888998888887666321 1 13457899999987      433321111 1112 23332221111        1


Q ss_pred             cccccccCCCeEEEEEEeecCCCC------------CCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHH
Q 022505          186 VISKKLEDQDKWQMSFVMPSKYGA------------NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDA  253 (296)
Q Consensus       186 v~~~~~~~~~~~tmsF~LP~~yq~------------~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~  253 (296)
                      ...+ ...+-.|.+++-+|...+.            ..|.+....|.+.++|+..+++..+.|-..  .+.+-..+|.+|
T Consensus        94 ~~~~-~~~~~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~w  170 (211)
T 3b49_A           94 FDLK-DRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQF  170 (211)
T ss_dssp             CCTT-CGGGEEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHH
T ss_pred             cccC-chhheEEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHH
Confidence            1100 0012367777877864321            023333467999999999999999999765  366777888899


Q ss_pred             HhcCCCcceec--CCcEEEEEeCCCCCC-CCCCceeEEEEee
Q 022505          254 LKGDRQFRVKE--GASVEVAQYNPPFTL-PFTRRNEIALEVE  292 (296)
Q Consensus       254 L~~~g~~~v~~--~~~~~~A~YdpP~tl-p~~RrNEVwi~v~  292 (296)
                      |.++|+.. ..  ++..+--.+|.|... +-.-+-||+++|+
T Consensus       171 l~~~g~~~-~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~  211 (211)
T 3b49_A          171 METEGLRN-DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS  211 (211)
T ss_dssp             HHHHTCCB-CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred             HHHCCCcc-ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence            99999721 12  144444445777543 2233679999874

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=91.68  E-value=1.4  Score=35.85  Aligned_cols=73  Identities=12%  Similarity=0.023  Sum_probs=50.6

Q ss_pred             CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeec
Q 022505          217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  293 (296)
Q Consensus       217 ~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~~  293 (296)
                      ..+...++|+.++||.++.|-..+ .+.+--..+. +||-+.|..   ....+.+-.|+.....+-.-.-||||+|++
T Consensus        85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~  158 (158)
T 3lur_A           85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---VKSAPFFELYQDGDTTSEKYITEIWMPVKG  158 (158)
T ss_dssp             GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred             CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence            468889999999999999996544 4555555555 589888863   223345667765433223456799999974

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=89.16  E-value=1.5  Score=38.70  Aligned_cols=73  Identities=11%  Similarity=0.097  Sum_probs=49.2

Q ss_pred             CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC----CCCCCC-CCCceeEEEE
Q 022505          217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN----PPFTLP-FTRRNEIALE  290 (296)
Q Consensus       217 ~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~-~~L~~~g~~~v~~~~~~~~A~Yd----pP~tlp-~~RrNEVwi~  290 (296)
                      ..+...++|+.++||..+.|-  .+.+.+--..|. +||.+.|.. . .++ +.+-.|.    ++.... -.-.-||||+
T Consensus       210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~-~-~~~-p~~E~Y~~~~~~~~~~~~~~~~tEI~iP  284 (292)
T 1d5y_A          210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT-R-RKG-QDIERYYPAEDAKAGDRPINLRCELLIP  284 (292)
T ss_dssp             TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE-E-CSS-CEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred             CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc-c-CCC-CcEEEEeeccccCCCCCCCceEEEEEEE
Confidence            468899999999999999994  456788888886 999999963 1 222 2334454    333221 1224599999


Q ss_pred             eecc
Q 022505          291 VERK  294 (296)
Q Consensus       291 v~~~  294 (296)
                      |+.+
T Consensus       285 I~~k  288 (292)
T 1d5y_A          285 IRRK  288 (292)
T ss_dssp             EECC
T ss_pred             eehh
Confidence            9865

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=85.82  E-value=10  Score=31.31  Aligned_cols=66  Identities=11%  Similarity=0.088  Sum_probs=46.8

Q ss_pred             CCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCC--CcceecCCcEEEEEeCCCCCCCCCCceeEEEEee
Q 022505          217 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR--QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  292 (296)
Q Consensus       217 ~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g--~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~  292 (296)
                      ..+...++|+.++||-++.|-.. +.+++--+.+..||-+.|  ..   ....+-+-.|+...      .-||||+|+
T Consensus       103 ~g~~~~~IP~g~YAVF~~~G~~p-~~i~~~w~~I~~WlP~sg~~y~---~~~~pdfE~Y~~~~------~~eI~IpI~  170 (170)
T 3gk6_A          103 SESVKTKVSSGKYVTFSATGEMP-QVVIDLWNEVWNYFASEHCPHK---RAYTTDFEYYKSAN------TVEISIAVR  170 (170)
T ss_dssp             TTCEEEEECCEEEEEEEEESSTT-HHHHHHHHHHHHHHC---CCCC---BCCSEEEEECCSSS------EEEEEEEBC
T ss_pred             CCcEEEEECCCCEEEEEecCCCH-HHHHHHHHHHHHhhhhcCCcce---ecCcCCEEEECCCC------eEEEEEEEC
Confidence            57888999999999999999554 467777777777999988  42   23345666776531      679999985

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=81.28  E-value=7.5  Score=30.86  Aligned_cols=70  Identities=11%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             CeEEEEecCeEEEEEEeCCcCCh--HHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEEeec
Q 022505          218 SVRIKEVPKKVVAVVAFSGFVTD--EDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  293 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~FsG~~t~--~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~v~~  293 (296)
                      +|+|+++|+.+|+.++..|...+  ..+.+.-.+|.+++..+|+.   ..+..+...||  +.. -.=+-|+.++|..
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~---~~g~~~~iy~d--~~~-~~~~~~~~~~v~~   79 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS---PSGPPFARYFG--MSA-GTFEVEFGFPVEG   79 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC---CSSCCEEEEES--CTT-SCEEEEEEEECCS
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCeEEEEec--CCC-cceEEEEEEEeCC
Confidence            68999999999999999997532  23456677899999999863   23444444555  222 2345677777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	4e-39

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  133 bits (336), Expect = 4e-39
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 100 DLETVKFKVLSRRGQ----YEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGK 155
            +ET  ++VLS  G+    YE R  E    A   +  +   D      +   + +Y+ G 
Sbjct: 6   SVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKP-VD-EALREAMPKIMKYVGGT 63

Query: 156 NTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPK 215
           N K   M MT PV      ++   ++              K ++ F +P+++  + P P 
Sbjct: 64  NDKGVGMGMTVPVSFAVFPNEDGSLQ-------------KKLKVWFRIPNQFQGSPPAPS 110

Query: 216 DPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP 275
           D SV+I+E     V    F G+  + D      +LR  L+G       +G     A Y+P
Sbjct: 111 DESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP--ATYQGDVYYCAGYDP 168

Query: 276 PFTLPFTRRNEI 287
           P   P+ RRNE+
Sbjct: 169 PMK-PYGRRNEV 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	97.78
d1r8ea2	157	Multidrug-binding domain of transcription activato	96.65
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	80.45

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-52  Score=363.96  Aligned_cols=174  Identities=28%  Similarity=0.400  Sum_probs=156.4

Q ss_pred             CCcCCCCeEEEEecC----CeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeec
Q 022505           99 PDLETVKFKVLSRRG----QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQ  174 (296)
Q Consensus        99 ~~~EcP~Y~Vl~~~~----~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~  174 (296)
                      .++|||+|+||++.+    +||+|+|++++||+|++.+++.  .+|..+||++|++||+|+|+++++|+||+||++++.+
T Consensus         5 ~~~E~~~y~v~~~~~~~~~~fE~R~Y~~~~wv~t~~~~~~~--~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~   82 (184)
T d2gova1           5 GSVETWPWQVLSTGGKEDVSYEERACEGGKFATVEVTDKPV--DEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFP   82 (184)
T ss_dssp             CSCCSCCCEEEEECCCSSSCEEEEECCCCEEEEEEEESSCH--HHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEE
T ss_pred             ccccCCCcEEEEECCccCCCEEEEecCCceEEEEEecCCCh--hhHHHhhhHHHhheeccCCCCCcccccccceEEEEec
Confidence            478999999999865    7999999999999999987542  1366789999999999999999999999999999877


Q ss_pred             CCCcccccccccccccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHH
Q 022505          175 SDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDAL  254 (296)
Q Consensus       175 ~~g~ki~mT~Pv~~~~~~~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L  254 (296)
                      +++       +      .|.+.|+|+|+||.+|++++|+|+|++|+|+++|+.++||++|+|+++++++.+++++|+++|
T Consensus        83 ~~~-------~------~~~~~~~m~F~lP~~~~~~~P~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L  149 (184)
T d2gova1          83 NED-------G------SLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTL  149 (184)
T ss_dssp             CTT-------S------CEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHT
T ss_pred             CCC-------C------cccCcEEEEEEcchhhcccCCCCccccceeeccCcceEEEEEeCCcccHHHHHHHHHHHHHHH
Confidence            654       2      146789999999999998999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceecCCcEEEEEeCCCCCCCCCCceeEEEE
Q 022505          255 KGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALE  290 (296)
Q Consensus       255 ~~~g~~~v~~~~~~~~A~YdpP~tlp~~RrNEVwi~  290 (296)
                      +++|+.  ..++.+++|+||+||++ |+|||||||.
T Consensus       150 ~~~g~~--~~~~~~~~a~Yd~P~~p-~~R~NEVw~v  182 (184)
T d2gova1         150 EGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLV  182 (184)
T ss_dssp             TTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEE
T ss_pred             HHCCCc--ccCCCEEEEEeCCCCCC-CCcceeEEEE
Confidence            999974  24556789999999996 9999999994

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=0.00016  Score=56.82  Aligned_cols=152  Identities=17%  Similarity=0.157  Sum_probs=96.2

Q ss_pred             CeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCcccccccccccccccC
Q 022505          114 QYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLED  193 (296)
Q Consensus       114 ~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~~  193 (296)
                      +|||+..++.++|.....|..   .+.-.+.|.+|+.++..++     +..+.+...-..  +        |..+..  .
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~---~e~i~~~w~~l~~~~~~~~-----~~~~~~~~~~~~--~--------p~~~~~--~   61 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW---EQTVKKGFEQLMMWVDSKN-----IVPKEWVAVYYD--N--------PDETPA--E   61 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH---HHHHHHHHHHHHHHHHHTT-----CCCSEEEEEECS--C--------TTTSCG--G
T ss_pred             CcEEEEECCEEEEEEEEEcCc---HHHHHHHHHHHHHHHHHhC-----CCCCCceEEEec--C--------cCcCCc--c
Confidence            689999999999998877632   1234578999999997644     333444332211  1        111111  1


Q ss_pred             CCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEE
Q 022505          194 QDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       194 ~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L-~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      +-.+-+++.++....  .|. .+..|.+.++|+.++|+..+.|-..+  +.+...+| .+||.++|.. . .++ +.+-.
T Consensus        62 ~~~~~~~v~v~~~~~--~~~-~~~~i~~~~lp~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~-~-~~~-p~~E~  133 (155)
T d1jyha_          62 KLRCDTVVTVPGYFT--LPE-NSEGVILTEITGGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYE-M-LPK-PCFEV  133 (155)
T ss_dssp             GCEEEEEEEECTTCC--CCS-SCTTCEEEEECCEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEE-E-CSS-CEEEE
T ss_pred             ceeEEEEEEcCCccc--cCc-ccceEEEEEECCccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCe-E-CCC-ccEEE
Confidence            236778888887553  332 23569999999999999999997543  34444455 5899999952 2 223 33344


Q ss_pred             e-CCCCCCCCCCceeEEEEeecc
Q 022505          273 Y-NPPFTLPFTRRNEIALEVERK  294 (296)
Q Consensus       273 Y-dpP~tlp~~RrNEVwi~v~~~  294 (296)
                      | +.|...+. -.=||||+|+++
T Consensus       134 Y~~~~~~~~~-~~~ei~iPIk~k  155 (155)
T d1jyha_         134 YLNNGAEDGY-WDIEMYVAVQPK  155 (155)
T ss_dssp             ECSCHHHHSS-EEEEEEEEEEEC
T ss_pred             EcCCCCCCCC-EEEEEEEEEEEC
Confidence            5 34433332 234999999875

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.042  Score=43.52  Aligned_cols=153  Identities=15%  Similarity=0.070  Sum_probs=95.1

Q ss_pred             CCeEEEEeCCceEEEEEcCCCCCcCcchhhHHHHHHHHhhccCCCCCcccCCCcceEEEeecCCCccccccccccccccc
Q 022505          113 GQYEIREVESYFIAETMMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE  192 (296)
Q Consensus       113 ~~yEiR~Y~~~~wasT~v~g~s~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~~~~g~ki~mT~Pv~~~~~~  192 (296)
                      ++.-|+.=+....+.+...+....  .....+|.+|++|+...|.     -...++-..+...+..+            .
T Consensus         2 ~ev~i~~~~ei~i~~~~~e~i~p~--~~~~~~~~~L~~~~~~~~~-----~~~~~~G~~~~~~~~~~------------~   62 (157)
T d1r8ea2           2 GEVFVLDEEEIRIIQTEAEGIGPE--NVLNASYSKLKKFIESADG-----FTNNSYGATFSFQPYTS------------I   62 (157)
T ss_dssp             TCCEEEEECCEEEEEEECTTCCTT--TCCGGGGHHHHHHHHHHHS-----SCCCCEEEEECCCCCSC------------G
T ss_pred             CceEEeccCcEEEEEEEecccCch--HHHHHHHHHHHHHHHHcCC-----CCCCceEEEEECCCccc------------C
Confidence            345667777888888887653221  2345789999999977653     23445555443222100            0


Q ss_pred             CCCeEEEEEEeecCCCCCCCCCCCCCeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEE
Q 022505          193 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQ  272 (296)
Q Consensus       193 ~~~~~tmsF~LP~~yq~~pP~P~d~~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~  272 (296)
                      ....+.-.|.....  ..-+...++++.+...|+.++++..|.|..  +++.+.-++|.+|+.++|+. +  .+..+--.
T Consensus        63 ~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~lp~G~ya~~~~~G~y--~~~~~~y~~l~~~~~~~g~~-~--~g~~~E~y  135 (157)
T d1r8ea2          63 DEMTYRHIFTPVLT--NKQISSITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDVYELI  135 (157)
T ss_dssp             GGCCCSEEEEECCC--CSCCSSCCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEEEEEE
T ss_pred             cceEEEEEEEeccc--ccccCCccCCceEEecCCeEEEEEEEEECc--cchHHHHHHHHHHHHhcCcC-c--CCCeEEEE
Confidence            12233333333221  112333457899999999999999999976  47788888999999999963 2  34455555


Q ss_pred             eCCCCCC--CCCCceeEEEEe
Q 022505          273 YNPPFTL--PFTRRNEIALEV  291 (296)
Q Consensus       273 YdpP~tl--p~~RrNEVwi~v  291 (296)
                      ++.|+..  +-.-.-||.|+|
T Consensus       136 ~~d~~~~~~~~~~~teI~ipv  156 (157)
T d1r8ea2         136 IPIHYSPKKQEEYRVEMKIRI  156 (157)
T ss_dssp             EESCCCSSSCCCEEEEEEEEE
T ss_pred             EcCCCCCCCHHHeEEEEEEEe
Confidence            5777654  234466777775

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=80.45  E-value=3.1  Score=30.92  Aligned_cols=70  Identities=20%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             CeEEEEecCeEEEEEEeCCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCC-CCCceeEEEEee
Q 022505          218 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLP-FTRRNEIALEVE  292 (296)
Q Consensus       218 ~V~I~~~P~~~vaV~~FsG~~t~~~~~~~~~~L~~~L~~~g~~~v~~~~~~~~A~YdpP~tlp-~~RrNEVwi~v~  292 (296)
                      +++|+++|+.+|+..+..|-. .+.+.+--++|.+++.++|+.   . .......||.|-..+ -.-+-++.+.|.
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~-~e~i~~~w~~l~~~~~~~~~~---~-~~~~~~~~~~p~~~~~~~~~~~~~v~v~   72 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV---P-KEWVAVYYDNPDETPAEKLRCDTVVTVP   72 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCC---C-SEEEEEECSCTTTSCGGGCEEEEEEEEC
T ss_pred             CcEEEEECCEEEEEEEEEcCc-HHHHHHHHHHHHHHHHHhCCC---C-CCceEEEecCcCcCCccceeEEEEEEcC
Confidence            478999999999999988854 455888889999999999863   2 345566677765432 223566766664