Citrus Sinensis ID: 022515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHHHccccccccHHcccccHHHHcccccHHHHHHHHHHHccHHHcHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHcccccEEEcccHHHHHccccccccEEEEEcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccHHHHHHHccccccccccHHHHHHccccccHHHHHccccHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHcHccccccEEEEccccccHHHHHHcccccccEEEEEcHHHHcccccccccEEEEEcccccccccccEEEccccHHHccHHHHHHHHHHHHHHcccccEccEEEEEEEEEcccccccccHHEEEEHHHHHHHccccccccHHHHHHHHHHccccccEEEEEcccEEEEEEcc
Coil and Loop (DISEMBL)
mnlidgdhDTELLEAQTHVWNHIFNFINSMTLKCAIQLGipdiiskhgkpmtLNELVSALtinpsksrcqlrtwfqnddptpfdtahgktlweyagdepklnnffneamASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAfpklectcfdlphvvngldsdlanlkyvggdmfeaiSPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRenkkgddksIETQLFFDMLMMVLLTGTERDEKEWTKLFtyagfsdykiipilglrslievyp
Flexible Loop (DISEMBL)
MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCkeaitsdgkkgkviIIDMirenkkgddksIETQLFFDMLMMVLLTGTERDEKEWTKLFtyagfsdykiipILGLRSLIEVYP
Low Complexity Region (SEG)
MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVgggigtaakaiakaFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP
Disordered region (IsUnstruct)
**********ELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEV**
Disordered Region (DISOPRED)
************LEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP
Disordered Region (DISEMBL)
MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP
Disordered Region (DISPRO)
********DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
B6VJS4	357	Trans-resveratrol di-O-me	no	no	0.820	0.680	0.653	8e-87
Q8GSN1	348	Myricetin O-methyltransfe	N/A	no	0.969	0.824	0.432	3e-73
Q6VMW0	366	8-hydroxyquercetin 8-O-me	N/A	no	0.959	0.775	0.442	8e-72
B0EXJ8	355	Tabersonine 16-O-methyltr	N/A	no	0.824	0.687	0.545	4e-68
Q84KK5	357	Isoflavone 7-O-methyltran	N/A	no	0.979	0.812	0.404	1e-65
O24529	352	Isoflavone-7-O-methyltran	N/A	no	0.979	0.823	0.410	1e-64
O22308	352	Isoflavone-7-O-methyltran	N/A	no	0.979	0.823	0.410	1e-64
O24305	360	6a-hydroxymaackiain methy	N/A	no	0.979	0.805	0.406	4e-64
A8QW53	374	5-pentadecatrienyl resorc	N/A	no	0.824	0.652	0.486	4e-64
O22309	352	Isoflavone-7-O-methyltran	N/A	no	0.979	0.823	0.410	6e-64

>sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2

 Score =  320 bits (820), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 162/248 (65%), Positives = 180/248 (72%), Gaps = 5/248 (2%)

Query: 49  KPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEA 108
           +P+ L  L   LT    K    L  WFQNDDPTPF TA+ ++ W+YAG EP+LNN FNEA
Sbjct: 115 RPLVLAMLDPILT----KPWHYLSAWFQNDDPTPFHTAYERSFWDYAGHEPQLNNSFNEA 170

Query: 109 MASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNG 168
           MASDA L TSV++ + + VF GLNSLVDVGGG G  AKAIA AFP L CT  DL HVV G
Sbjct: 171 MASDARLLTSVLLKEGQGVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAG 230

Query: 169 LDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVI 228
           L     NL Y  GDMFEAI PADA+LLKWILHDW++EECVKILK+C+EAI S    GKVI
Sbjct: 231 LQGS-KNLNYFAGDMFEAIPPADAILLKWILHDWSNEECVKILKRCREAIPSKENGGKVI 289

Query: 229 IIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGL 288
           IIDMI    +GD KS ETQLFFDM MM+   G ERDE EW KLF  AGFS YKI PILGL
Sbjct: 290 IIDMIMMKNQGDYKSTETQLFFDMTMMIFAPGRERDENEWEKLFLDAGFSHYKITPILGL 349

Query: 289 RSLIEVYP 296
           RSLIEVYP
Sbjct: 350 RSLIEVYP 357

Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME).
Vitis vinifera (taxid: 29760)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 0

>sp|Q8GSN1|MOMT_CATRO Myricetin O-methyltransferase OS=Catharanthus roseus PE=1 SV=1

 Score =  275 bits (703), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/347 (43%), Positives = 200/347 (57%), Gaps = 60/347 (17%)

Query: 8   HDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMT--------------- 52
             +E+  AQ H +  +F+F +  +LKCA+QLGIPD I  HGKPM                
Sbjct: 4   QSSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINPSKA 63

Query: 53  --------------------------------------LNELVSALTINPS---KSRCQL 71
                                                 LN +   L +N     K+   +
Sbjct: 64  PYIYRLMRILVAAGYFSEEEKNVYSLTPFTRLLLKNDPLNSISMVLGVNQIAELKAWNAM 123

Query: 72  RTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGL 131
             WFQN+D T F+TAHGK  W++ G E K    F+  MA+D+ L + ++I +   +FEGL
Sbjct: 124 SEWFQNEDLTAFETAHGKNFWDF-GAEDKYGKNFDGVMAADSILVSKMLIPEFNYLFEGL 182

Query: 132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPAD 191
           +SLVDVGGG GT AKAIAK+FP L+CT FDLPHVV  L+S   NL++VGGDMFE I  A+
Sbjct: 183 DSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLEST-ENLEFVGGDMFEKIPSAN 241

Query: 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID--MIRENKKGDDKSIETQLF 249
           A+LLKWILHDW DEECVK+LK C++AI    K GKVI+I+  ++   K  ++++++ Q+ 
Sbjct: 242 AILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENEEAVKAQIS 301

Query: 250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            D+ MMV  T  ER E+EW  LF  AGFS YKI P++  RS IEVYP
Sbjct: 302 SDIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348

Methylates myricetin and dihydromyricetin at 2 sites. Inactive towards 16-hydroxytabersonine, the phenylpropanoids 5-hydroxyferulate, caffeate and their CoA-esters, flavones and flavonones possessing 2 or 3 B-ring hydroxyl groups.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 9

>sp|Q6VMW0|Q8OMT_MENPI 8-hydroxyquercetin 8-O-methyltransferase OS=Mentha piperita GN=OMT2 PE=1 SV=1

 Score =  270 bits (691), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 158/357 (44%), Positives = 211/357 (59%), Gaps = 73/357 (20%)

Query: 11  ELLEAQTHVWNHIFNFINSMTLKCAIQL---------GIPDIISKHGKPMTLNELVS--- 58
           ELLEAQ HVWNHI+++INSM+LKCAIQL         G P  +S+    + +N+  S   
Sbjct: 12  ELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHGL 71

Query: 59  --------------------------------ALTINPSKSRCQLRT------------- 73
                                           A ++ P+ SR  LR+             
Sbjct: 72  FRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPA-SRLLLRSEPLSVAPFALAMS 130

Query: 74  -------------WFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVM 120
                        WF+ND    FDT +G T  EYA  + +LN  FNEAMA DA    S++
Sbjct: 131 DPVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSIL 190

Query: 121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVG 180
             +C+++F+GL S+VDVGGG G  AK IA AFP +ECT  DLP+VV GL     NL +V 
Sbjct: 191 TTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGS-ENLSFVS 249

Query: 181 GDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAIT-SDGKKGKVIIIDMIRENKKG 239
           GDMF+ I  ADA+ +K+ILHDWNDEECVKILKKCKEAI+ S+    K+I+++++ E++K 
Sbjct: 250 GDMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKE 309

Query: 240 DDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
             ++ ET+LFFDM M+ ++TG ER EKEW KLF  AGF++YKI  +LGLRS+IEV+P
Sbjct: 310 THEATETKLFFDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366

8-O-methyltransferase active on various hydroxylated flavonoid substrates, including 7,8,3'4'-tetrahydroxy-flavone, 7,8,4'-trihydroxy-flavone and 8-hydroxy-flavone 7-methyl ether.

Mentha piperita (taxid: 34256)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 8

>sp|B0EXJ8|HTOMT_CATRO Tabersonine 16-O-methyltransferase OS=Catharanthus roseus GN=16OMT PE=1 SV=1

 Score =  258 bits (658), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 138/253 (54%), Positives = 174/253 (68%), Gaps = 9/253 (3%)

Query: 49  KPMTLNELVSALTINPSKSRC--QLRTWFQNDD--PTPFDTAHGKTLWEYAGDEPKLNNF 104
           +P+ L  +V  +  +P + +    L  W+QN+D   T F+TAHGK  W Y+ +  +   F
Sbjct: 107 EPLNLRGIVLTMA-DPVQLKAWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEF 165

Query: 105 FNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPH 164
           FNEAMASD+ L + ++I + K +FEGL SLVD+GGG GT AKAIAK FP+L+CT FDLPH
Sbjct: 166 FNEAMASDSQLISKLLIGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPH 225

Query: 165 VVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKK 224
           VV  L+S   N+++V GDMFE I  A+A+ LKWILHDWNDE+CVKILK CK+AI + G  
Sbjct: 226 VVANLESK-ENVEFVAGDMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKG-- 282

Query: 225 GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIP 284
           GKVIIIDM+  + K DD  ++TQ   DM M+V     ER EKEW  LF  AGFSDYKI P
Sbjct: 283 GKVIIIDMVMYSDKKDDHLVKTQTSMDMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYP 342

Query: 285 ILGL-RSLIEVYP 296
            L   RSLIEVYP
Sbjct: 343 KLDFTRSLIEVYP 355

16-O-methyltransferase involved in the biosynthesis of vindoline. Highly specific for 16-hydroxytabersonine. No activity with tabersonine, 3-hydroxytyramine, 4-hydroxytyramine, 5-hydroxytryptamine (5HT), 2,3-dihydro-3-hydroxytabersonine, lochnericine, hoerhammericine, 16-hydroxy-2,3-dihydro-3-hydroxytabersonine, 16-hydroxylochnericine, 16-hydroxyhoerhammericine, quercetin, kaempferol and caffeic acid as substrates.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q84KK5|D7OMT_GLYEC Isoflavone 7-O-methyltransferase OS=Glycyrrhiza echinata GN=D7OMT PE=1 SV=1

 Score =  250 bits (638), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/356 (40%), Positives = 196/356 (55%), Gaps = 66/356 (18%)

Query: 4   IDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTIN 63
           I+G   +E+ + Q  ++ HI+ FI+SM LK  ++L IP+II  HGKP+T++ELVS L + 
Sbjct: 5   INGRKPSEIFQGQALLYRHIYAFIDSMCLKWIVELDIPNIIHNHGKPITVSELVSILKVP 64

Query: 64  PSKS-----------------RCQLRTWFQND---------------------------- 78
            +K+                 R +++   + +                            
Sbjct: 65  QTKAGNVQRIMRYMAHNGFFERVRIQEEQEENEAYALTAASELLVKGSELCLAPMVECVL 124

Query: 79  DPTPFDTAHGKTLWEYAGD------------------EPKLNNFFNEAMASDAWLATSVM 120
           DPT   + H    W Y  D                   P+ N  FN+AMASD+ +  ++ 
Sbjct: 125 DPTLSGSYHQLKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSFNDAMASDSQM-INLA 183

Query: 121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVG 180
           +  C   FEG+ S+VDVGGGIGT AK I   FP L+C  FD P VV  L S   NL YVG
Sbjct: 184 LRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKVVENL-SGTNNLSYVG 242

Query: 181 GDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD 240
           GDMF+++  ADAVLLKWILH+W D +C +IL+KCKEA++SDG+KGKVIII+M+    + +
Sbjct: 243 GDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKGKVIIIEMVINENQDE 302

Query: 241 DKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            +   T+L  D + M  L G ER E+EW KLF  AGF DYKI P+ G  SLIEVYP
Sbjct: 303 HEITGTKLLMD-VNMACLNGKERSEEEWKKLFIEAGFRDYKISPLTGFLSLIEVYP 357

7-O-methyltransferase involved in the biosynthesis of isoformononetin. Can use daidzein as substrate, but not medicarpin or 2,7,4'-trihydroxyisoflavanone.

Glycyrrhiza echinata (taxid: 46348)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O24529|7OMT8_MEDSA Isoflavone-7-O-methyltransferase 8 OS=Medicago sativa PE=1 SV=1

 Score =  246 bits (628), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/351 (41%), Positives = 199/351 (56%), Gaps = 61/351 (17%)

Query: 4   IDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIP---------------------- 41
           I+G   +E+ +AQ  ++ HI+ FI+SM+LK A+++ IP                      
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 42  --------------------DIISKHGKPMTL---NELV---SALTINP----------S 65
                               +II+K  +   L   +EL+   S L + P          S
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124

Query: 66  KSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCK 125
            S  +L+ W   +D T F    G   W++    P+ N  FN+AMASD+ L  ++ +  C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183

Query: 126 DVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE 185
            VF+GL S+VDVGGG GT AK I + FPKL+C  FD P VV  L S   NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242

Query: 186 AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245
           +I  ADAVLLK+ILH+W D++C++ILKKCKEA+T+DGK+GKV IIDM+ + KK +++  +
Sbjct: 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQ 302

Query: 246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            +L  D + M  L G ER+E+EW KLF  AGF  YKI P+ G  SLIE+YP
Sbjct: 303 IKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O22308|7OMT6_MEDSA Isoflavone-7-O-methyltransferase 6 OS=Medicago sativa PE=2 SV=1

 Score =  246 bits (628), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/351 (41%), Positives = 199/351 (56%), Gaps = 61/351 (17%)

Query: 4   IDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIP---------------------- 41
           I+G   +E+ +AQ  ++ HI+ FI+SM+LK A+++ IP                      
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 42  --------------------DIISKHGKPMTL---NELV---SALTINP----------S 65
                               +II+K  +   L   +EL+   S L + P          S
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124

Query: 66  KSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCK 125
            S  +L+ W   +D T F    G   W++    P+ N  FN+AMASD+ L  ++ +  C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183

Query: 126 DVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE 185
            VF+GL S+VDVGGG GT AK I + FPKL+C  FD P VV  L S   NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242

Query: 186 AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245
           +I  ADAVLLK+ILH+W D++C++ILKKCKEA+T+DGK+GKV IIDM+ + KK +++  +
Sbjct: 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDEKKDENQVTQ 302

Query: 246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            +L  D + M  L G ER+E+EW KLF  AGF  YKI P+ G  SLIE+YP
Sbjct: 303 IKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

>sp|O24305|M3OM1_PEA 6a-hydroxymaackiain methyltransferase 1 OS=Pisum sativum GN=HMM1 PE=1 SV=1

 Score =  244 bits (624), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/357 (40%), Positives = 192/357 (53%), Gaps = 67/357 (18%)

Query: 5   DGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGK--------------P 50
           +G  ++EL  AQ H++ H++NF++SM LK A++LGI D I  HGK              P
Sbjct: 6   NGSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLPELSSSLKLHP 65

Query: 51  MTLNELV-------------------------SALTINPS-------KSRC--------- 69
             +N L                          +A  + PS       KS C         
Sbjct: 66  SKVNILYRFLRLLTHNGFFAKTTVKSNEGEEETAYVLTPSSKLLVSGKSTCLSSLVKGAL 125

Query: 70  ---------QLRTWFQND-DPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSV 119
                      + WF  D + T F+ A G+  W++   +    + F +AMA+D+ L   +
Sbjct: 126 HPSSLDMWGVSKKWFHEDKEQTLFECATGENYWDFLNKDSDSLSMFQDAMAADSRLF-KL 184

Query: 120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYV 179
            I + K VFEGL SLVDV GG G  AK I +AFP ++CT FD P VV  L  +  NL +V
Sbjct: 185 AIQENKHVFEGLESLVDVAGGTGGVAKLIHEAFPHIKCTVFDQPQVVGNLTGN-ENLNFV 243

Query: 180 GGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG 239
           GGDMF+++  ADAVLLKW+LHDWNDE  +KILK  KEAI+  GK GKVIIID+  +    
Sbjct: 244 GGDMFKSVPSADAVLLKWVLHDWNDELSLKILKNSKEAISHKGKDGKVIIIDISIDENSD 303

Query: 240 DDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           D    E QL +D++M+ +  G ER +KEW KL   AGFS YKI PI G +SLIEVYP
Sbjct: 304 DRGLTELQLEYDVVMLTMFLGKERTKKEWEKLIYDAGFSRYKITPICGFKSLIEVYP 360

Methyltransferase involved in the phytoalexin pisatin biosynthesis. Has both 3- and 4'-O-methyltransferase activities. Can use (+)-6a-hydroxymaackiain, 2,7,4'-trihydroxyisoflavanone and with much less activity (+)-medicarpin as substrates, but not (-)-6a-hydroxymaackiain, daidzein, formononetin or isoliquiritigenin. May be involved in formononetin biosynthesis.

Pisum sativum (taxid: 3888)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 4

EC: 6

>sp|A8QW53|OMT3_SORBI 5-pentadecatrienyl resorcinol O-methyltransferase OS=Sorghum bicolor GN=OMT3 PE=1 SV=1

 Score =  244 bits (624), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 124/255 (48%), Positives = 170/255 (66%), Gaps = 11/255 (4%)

Query: 49  KPMTLNELVSALTINPSKSRCQLRTWFQNDDP------TPFDTAHGKTLWEYAGDEPKLN 102
            PM LN ++S    +P      L  WF++D+        PF   +G TLWE    +  +N
Sbjct: 124 SPM-LNHVLSPFRDSPLS--MGLTAWFRHDEDEQAPGMCPFTLMYGTTLWEVCRRDDAIN 180

Query: 103 NFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL 162
             FN AMA+D+     +++ +  +VF G++SLVDV GG+G A  AIA AFP L+CT  DL
Sbjct: 181 ALFNNAMAADSNFLMQILLKEFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDL 240

Query: 163 PHVV-NGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSD 221
           PHVV     S + N+++VGGDMFE+I PA+ VLLKWILHDW+++EC+KILK CK+AI S 
Sbjct: 241 PHVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLKWILHDWSNDECIKILKNCKQAIPSR 300

Query: 222 GKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281
              GK+IIID++  +   D K +ETQ+ +D+ +M  + G ERDE+EW K+F  AGF DYK
Sbjct: 301 DAGGKIIIIDVVVGSDSSDTKLLETQVIYDLHLMK-IGGVERDEQEWKKIFLEAGFKDYK 359

Query: 282 IIPILGLRSLIEVYP 296
           I+PILGLRS+IE+YP
Sbjct: 360 IMPILGLRSIIELYP 374

O-methyltransferase involved in the biosynthetic pathway of the phytotoxin sorgoleone, a potent broad-spectrum inhibitor active against many agronomically important monocot and dicot weed species. Substrate specificity for alkylresorcinols. Strong preference for a five carbons alkyl side chain.

Sorghum bicolor (taxid: 4558)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 7

>sp|O22309|7OMT9_MEDSA Isoflavone-7-O-methyltransferase 9 OS=Medicago sativa PE=2 SV=1

 Score =  244 bits (622), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 144/351 (41%), Positives = 197/351 (56%), Gaps = 61/351 (17%)

Query: 4   IDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIP---------------------- 41
           I+G   +E+ +AQ  ++ HI+ FI+SM+LK A+ + IP                      
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVP 64

Query: 42  --------------------DIISKHGKPMTL---NELV---SALTINP----------S 65
                               +II+K  +   L   +EL+   S L + P          S
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124

Query: 66  KSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCK 125
            S  +L+ W   +D T F    G   W++    P+ N  FN+AMASD+ L  ++ +  C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183

Query: 126 DVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE 185
            VF+GL S+VDVGGG GT AK I + FPKL+C  FD P VV  L S   NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242

Query: 186 AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245
           +I  ADAVLLK+ILH+W D++C++ILKKCKEA+T+DGK+GKV IIDM+   KK +++  +
Sbjct: 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVINEKKDENQVTQ 302

Query: 246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            +L  D + M  L G ER+E+EW KLF  AGF  YKI P+ G  SLIE+YP
Sbjct: 303 IKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352

Transfers a methyl group to 7-hydroxyls of the isoflavones daidzein, genistein and 6,7,4'-trihydroxyisoflavone. Can also methylate (+)6a-hydroxymaackiain with lower efficiency.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
147776504	323	hypothetical protein VITISV_027590 [Viti	0.996	0.913	0.629	1e-108
356500914	326	PREDICTED: LOW QUALITY PROTEIN: 8-hydrox	0.989	0.898	0.608	1e-108
225446491	357	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.993	0.823	0.579	1e-107
330375623	367	orcinol O-methyltransferase-like protein	0.983	0.792	0.592	1e-107
147816431	357	hypothetical protein VITISV_020020 [Viti	0.993	0.823	0.576	1e-107
356553132	358	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.983	0.812	0.566	1e-105
224146520	357	flavonoid o-methyltransferase related [P	0.993	0.823	0.584	1e-105
20514369	366	orcinol O-methyltransferase [Rosa hybrid	0.979	0.792	0.583	1e-105
356553136	358	PREDICTED: 8-hydroxyquercetin 8-O-methyl	0.996	0.824	0.557	1e-104
356551928	359	PREDICTED: LOW QUALITY PROTEIN: 8-hydrox	0.983	0.810	0.553	1e-103

>gi|147776504|emb|CAN69556.1| hypothetical protein VITISV_027590 [Vitis vinifera]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/324 (62%), Positives = 226/324 (69%), Gaps = 29/324 (8%)

Query: 1   MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNE----- 55
           M+  +G+   ELL AQ HVWNHI NFI S++LKCAIQLGIPDII  HGKPMTL E     
Sbjct: 1   MDFANGEISAELLHAQAHVWNHILNFIKSVSLKCAIQLGIPDIIHNHGKPMTLPEAGEEE 60

Query: 56  -------------LVSALTINP----------SKSRCQLRTWFQNDDPTPFDTAHGKTLW 92
                        +  +L+I P          +K    L  WFQNDDPTPF TAH +  W
Sbjct: 61  EGYVLTDASRLLLMDDSLSIRPLLLAMLDPILTKPWHYLSAWFQNDDPTPFHTAHERPFW 120

Query: 93  EYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF 152
           +YAG EP+LNNFFNEAMASDA L TSV++ + K VFEGLNSLVDVGGG G  AKAIA AF
Sbjct: 121 DYAGHEPQLNNFFNEAMASDARLVTSVLLKEGKGVFEGLNSLVDVGGGTGQVAKAIANAF 180

Query: 153 PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILK 212
           P L CT  DLPHVV GL     NL Y  GD+FEAI PADA+LLKWILHDW+DEECVKILK
Sbjct: 181 PHLNCTVLDLPHVVAGLQGS-KNLNYFAGDIFEAIPPADAILLKWILHDWSDEECVKILK 239

Query: 213 KCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF 272
           +C+EAI S    GKVIIIDMI    +GD KSIETQLFFDM MM+   G ERDE EW KLF
Sbjct: 240 RCREAIPSKENGGKVIIIDMIMMKNQGDYKSIETQLFFDMTMMIFAAGRERDENEWEKLF 299

Query: 273 TYAGFSDYKIIPILGLRSLIEVYP 296
             AGFS YKI PILGLRSLIEVYP
Sbjct: 300 LDAGFSHYKITPILGLRSLIEVYP 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500914|ref|XP_003519275.1| PREDICTED: LOW QUALITY PROTEIN: 8-hydroxyquercetin 8-O-methyltransferase-like [Glycine max]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/327 (60%), Positives = 236/327 (72%), Gaps = 34/327 (10%)

Query: 1   MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSAL 60
           M  +D DH  +LL AQTH+WNHIF+FI+SM LKC + LGIPDII  +G+PM L+ LV +L
Sbjct: 1   MESLDEDHAAKLLRAQTHIWNHIFSFISSMXLKCVVDLGIPDIIHNYGQPMPLSNLVVSL 60

Query: 61  TINPSKSRC---------------------------------QLRTWFQNDDPTPFDTAH 87
            I+PSK+                                   Q   WF+N DPTPF+TAH
Sbjct: 61  PIHPSKTHFVHRLMPIMIHSGLMSVTPFLHSILDPILTNPWNQFSNWFKNGDPTPFETAH 120

Query: 88  GKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKA 147
           G   W+YAG + KLNN FN+AMASDA L TS++I KCK VF GL SLVDVGGG GT AKA
Sbjct: 121 GMMFWDYAGADSKLNNLFNDAMASDARLVTSLVIEKCKGVFMGLGSLVDVGGGTGTMAKA 180

Query: 148 IAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEEC 207
           IAK+FP+L+C  FDLPHVV+GL     NLK+VGGDMFEAI PADA+LLKWILHD NDEEC
Sbjct: 181 IAKSFPQLDCIVFDLPHVVSGLQGS-ENLKFVGGDMFEAIPPADAILLKWILHDXNDEEC 239

Query: 208 VKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE 267
           V ILKKCKEAIT  GK+GKVIIIDM+ EN+K DD+ I TQLFFDMLMMVL+TG ER +KE
Sbjct: 240 VDILKKCKEAITRKGKEGKVIIIDMVVENEKRDDEPIGTQLFFDMLMMVLVTGKERSKKE 299

Query: 268 WTKLFTYAGFSDYKIIPILGLRSLIEV 294
           W KL + A +++YKI P+LGLRSLIE+
Sbjct: 300 WVKLNSSADYNNYKITPVLGLRSLIEI 326

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446491|ref|XP_002278211.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase [Vitis vinifera]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 244/359 (67%), Gaps = 65/359 (18%)

Query: 1   MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGI-------------PDIISK- 46
           M+L   +  +ELL AQ HVWNHIFNFINSM+LKCAIQLGI             P++++K 
Sbjct: 1   MDLESVETSSELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 47  --HGK---------------------------------------------PMTLNELVSA 59
             H K                                             P+++   + A
Sbjct: 61  PIHPKKVWCVYRLMRILVQSGFFARQKVEESEQEEGYVLTHASRLLLEDDPLSVRPFLLA 120

Query: 60  LTINP--SKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLAT 117
           + ++P  +K    +  WFQNDDPTPFDTAHG+T W+Y G EPK+NNFFNEAMASDA L T
Sbjct: 121 M-LDPILTKPWHYVSAWFQNDDPTPFDTAHGRTFWDYGGHEPKINNFFNEAMASDARLVT 179

Query: 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLK 177
           SV+I  CK VFEGLNSLVDVGGG GT AKAIA AFP L CT FDLPHVV GL+    NL 
Sbjct: 180 SVLIKDCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGS-KNLN 238

Query: 178 YVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237
           Y+GGDMF+ I PADA+LLKWILHDWNDEECVKIL++C++AI S  K GKVIIIDM+ EN+
Sbjct: 239 YLGGDMFKGIPPADAILLKWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQ 298

Query: 238 KGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           KGDD+S+ETQLFFDMLMM+L+TG ER+EKEW KLF  AGFS YKI PILGLRSLIEVYP
Sbjct: 299 KGDDESMETQLFFDMLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330375623|gb|AEC13057.1| orcinol O-methyltransferase-like protein [Rosa chinensis]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/353 (59%), Positives = 234/353 (66%), Gaps = 62/353 (17%)

Query: 5   DGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINP 64
           +G+H  ELL AQ H+WNHIF+FINSM+LK AIQLGIPDII+KHG PMTL+EL SAL I+P
Sbjct: 16  NGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHGYPMTLSELTSALPIHP 75

Query: 65  SKSRCQLR------------------------------TWFQNDDP---TPFDTA----- 86
           +KS    R                                   D P   TPF TA     
Sbjct: 76  TKSHSVYRLMRILVHSGFFAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPFLTAMLDPV 135

Query: 87  -----------------------HGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHK 123
                                  HG T W+Y   +P + +FFN+AMASDA L TSV+I  
Sbjct: 136 LTKPWNYLSTWFQNDDPTPFDTAHGMTFWDYGNHQPSIAHFFNDAMASDARLVTSVIIDD 195

Query: 124 CKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDM 183
           CK VFEGL SLVDVGGG GT AKAIA AFP +ECT  DLPHVV  L     NLKY GGDM
Sbjct: 196 CKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKYTGGDM 254

Query: 184 FEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS 243
           FEA+ PAD VLLKWILHDWNDEECVKILK+ +EAITS  K GKVIIIDM+ EN+KGD++S
Sbjct: 255 FEAVPPADTVLLKWILHDWNDEECVKILKRSREAITSKDKNGKVIIIDMMMENQKGDEES 314

Query: 244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           IETQLFFDMLMM L+TG ER+EKEW KLFT AGFSDYKI PILGLRSLIEVYP
Sbjct: 315 IETQLFFDMLMMALVTGKERNEKEWAKLFTDAGFSDYKITPILGLRSLIEVYP 367

Source: Rosa chinensis

Species: Rosa chinensis

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816431|emb|CAN61955.1| hypothetical protein VITISV_020020 [Vitis vinifera]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/359 (57%), Positives = 242/359 (67%), Gaps = 65/359 (18%)

Query: 1   MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGI-------------PDIISK- 46
           M+L   +  +ELL AQ HVWNHIFNFINSM+LKCAIQLGI             P++++K 
Sbjct: 1   MDLESVETSSELLHAQAHVWNHIFNFINSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKL 60

Query: 47  --HGK---------------------------------------------PMTLNELVSA 59
             H K                                             P+++   + A
Sbjct: 61  PIHPKKVWCVYRLMRILVQSGFFARQKVEESEQEEGYVLTHASRLLLEDDPLSVRPFLLA 120

Query: 60  LTINP--SKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLAT 117
           + ++P  +K    +  WFQNDDPTPFDTAHG T W+Y G EPKJNNFFNEAMASDA L T
Sbjct: 121 M-LDPILTKPWHYVSAWFQNDDPTPFDTAHGXTFWDYGGHEPKJNNFFNEAMASDARLVT 179

Query: 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLK 177
           S +I  CK VFEGLNSLVDVGGG GT AKAIA AFP L CT FDLPHVV GL+    NL 
Sbjct: 180 SXLIKDCKGVFEGLNSLVDVGGGTGTVAKAIANAFPHLNCTVFDLPHVVAGLEGS-KNLN 238

Query: 178 YVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237
           Y+GGDMF+ I PADA+LLKWILHDWNDEECVKIL++C++AI S  K GKVIIIDM+ EN+
Sbjct: 239 YLGGDMFKGIPPADAILLKWILHDWNDEECVKILQQCRQAIPSKEKGGKVIIIDMMMENQ 298

Query: 238 KGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           KGDD+S+ETQLFFDMLMM+L+TG ER+EKEW KLF  AGFS YKI PILGLRSLIEVYP
Sbjct: 299 KGDDESMETQLFFDMLMMILVTGQERNEKEWEKLFLDAGFSGYKITPILGLRSLIEVYP 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553132|ref|XP_003544912.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like isoform 1 [Glycine max]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/355 (56%), Positives = 242/355 (68%), Gaps = 64/355 (18%)

Query: 5   DGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINP 64
           D +H  +LL AQTH+WNHIF+FINSM+LKC + LGIPDII  +G+PM L+ L+++L I+P
Sbjct: 5   DEEHAAKLLRAQTHIWNHIFSFINSMSLKCVVDLGIPDIIHNYGQPMPLSNLIASLPIHP 64

Query: 65  SKS-------RCQLRTWF---QNDD-------------------------PTPF------ 83
           SK+       R  + + F   QN D                          TPF      
Sbjct: 65  SKTCFVHRLMRIMIHSGFFSLQNHDLENELEAKYVLTDASVLLLKNHPMSVTPFLHAMLD 124

Query: 84  ----------------------DTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMI 121
                                 +TAHGK  W+YAG +PKLN+ FN+AMASDA   TS++I
Sbjct: 125 PVLTNPWNQFSTWFKNGDPTPFETAHGKMFWDYAGADPKLNHLFNDAMASDARFVTSLVI 184

Query: 122 HKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGG 181
            KCK VF GL SLVDVGGG GT AKAIAK+FP++EC  FDLPHVV+GL     NLKYV G
Sbjct: 185 EKCKGVFMGLESLVDVGGGTGTMAKAIAKSFPRVECIVFDLPHVVSGLKGS-ENLKYVAG 243

Query: 182 DMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD 241
           DMFEAI PADA+LLKWILHDWNDEECV ILKKCKEAIT  GK+GKVIIIDM+ EN+K DD
Sbjct: 244 DMFEAIPPADAILLKWILHDWNDEECVDILKKCKEAITRKGKEGKVIIIDMVVENEKRDD 303

Query: 242 KSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           +S+ETQLFFDMLMMVL+TG ER +KEW KL + AG+++YKI P+LGLRSLIE+YP
Sbjct: 304 ESVETQLFFDMLMMVLVTGKERSKKEWAKLISSAGYNNYKITPVLGLRSLIEIYP 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146520|ref|XP_002326036.1| flavonoid o-methyltransferase related [Populus trichocarpa] gi|222862911|gb|EEF00418.1| flavonoid o-methyltransferase related [Populus trichocarpa]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/359 (58%), Positives = 247/359 (68%), Gaps = 65/359 (18%)

Query: 1   MNLIDGD-HDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSA 59
           M++ +G+ H  ELL+AQ HVWNHIFNF+NSM+LKCAIQLGIPD+I  HGKPMTL+ELV+ 
Sbjct: 1   MHVAEGNLHGAELLQAQAHVWNHIFNFVNSMSLKCAIQLGIPDVIHNHGKPMTLSELVAV 60

Query: 60  LTINPSKS-------RCQLRTWF---QN---------------------DDP---TPF-- 83
           L I+PSK+       R  + + F   QN                     D+P   TPF  
Sbjct: 61  LPIHPSKAPGIYRLMRILVHSGFFATQNNSGETEGEGYVLTNASQLLIKDNPFSVTPFLL 120

Query: 84  --------------------------DTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLAT 117
                                      TAH +T WEYAG E +LN+FFNEAMASDA L +
Sbjct: 121 AMLDPILTQPWHYVSVWFQNDAPSSFYTAHQRTCWEYAGHETELNHFFNEAMASDARLVS 180

Query: 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLK 177
           SV++++CK VFEGLNSLVDVGGG GT AKAIAK F  L+CT FDLPHVV GL+    NLK
Sbjct: 181 SVLVNECKGVFEGLNSLVDVGGGTGTVAKAIAKEFQHLDCTVFDLPHVVAGLEGS-ENLK 239

Query: 178 YVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237
           Y+ GDMFEAI  ADA+LLKWILHDWNDEECVKILK+CKEAI    + GK+IIIDM+ EN 
Sbjct: 240 YLSGDMFEAIPQADAILLKWILHDWNDEECVKILKQCKEAIKGR-EGGKLIIIDMVVENN 298

Query: 238 KGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           K  + S ETQLFFDMLMM+L+TG ER+EKEW KLFT AGFS+YKI P+LGLRSLIEVYP
Sbjct: 299 KEVEGSTETQLFFDMLMMILVTGKERNEKEWAKLFTDAGFSNYKINPVLGLRSLIEVYP 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20514369|gb|AAM23005.1|AF502434_1 orcinol O-methyltransferase [Rosa hybrid cultivar] gi|27527924|emb|CAD29459.1| orcinol O-methyltransferase [Rosa chinensis] gi|53748112|emb|CAH05078.1| orcinol O-methyltransferase 2 [Rosa chinensis]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/353 (58%), Positives = 232/353 (65%), Gaps = 63/353 (17%)

Query: 5   DGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINP 64
           +G+H  ELL AQ H+WNHIF+FINSM+LK AIQLGIPDII+KHG PMTL+EL SAL I+P
Sbjct: 16  NGEHSNELLHAQAHIWNHIFSFINSMSLKSAIQLGIPDIINKHG-PMTLSELTSALPIHP 74

Query: 65  SKSRCQLR------------------------------TWFQNDDP---TPFDTA----- 86
           +KS    R                                   D P   TPF TA     
Sbjct: 75  TKSHSVYRLMRILVHSGFFAKKKLSKTDEEGYTLTDASQLLLKDHPLSLTPFLTAMLDPV 134

Query: 87  -----------------------HGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHK 123
                                  HG T W+Y   +P + + FN+AMASDA L TSV+I  
Sbjct: 135 LTTPWNYLSTWFQNEDPTPFDTAHGMTFWDYGNHQPSIAHLFNDAMASDARLVTSVIIDD 194

Query: 124 CKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDM 183
           CK VFEGL SLVDVGGG GT AKAIA AFP +ECT  DLPHVV  L     NLKY GGDM
Sbjct: 195 CKGVFEGLESLVDVGGGTGTVAKAIADAFPHIECTVLDLPHVVADLQGS-KNLKYTGGDM 253

Query: 184 FEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS 243
           FEA+ PAD VLLKWILHDWNDEEC+KILK+ + AITS  KKGKVIIIDM+ EN+KGD++S
Sbjct: 254 FEAVPPADTVLLKWILHDWNDEECIKILKRSRVAITSKDKKGKVIIIDMMMENQKGDEES 313

Query: 244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           IETQLFFDMLMM L+ G ER+EKEW KLFT AGFSDYKI PILGLRSLIEVYP
Sbjct: 314 IETQLFFDMLMMALVRGQERNEKEWAKLFTDAGFSDYKITPILGLRSLIEVYP 366

Source: Rosa hybrid cultivar

Species: Rosa hybrid cultivar

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553136|ref|XP_003544914.1| PREDICTED: 8-hydroxyquercetin 8-O-methyltransferase-like [Glycine max]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/359 (55%), Positives = 243/359 (67%), Gaps = 64/359 (17%)

Query: 1   MNLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSAL 60
           M+  D +H  +LL AQTH+WNHIF+FINSM+LKC + LGIPDII  +G+PM L+ L+++L
Sbjct: 1   MDSHDEEHAAKLLRAQTHIWNHIFSFINSMSLKCVVDLGIPDIIHNYGQPMPLSNLIASL 60

Query: 61  TINPSKS-------RCQLRTWF---QNDD-------------------------PTPF-- 83
            I+PSK+       R  + + F   QN D                          TPF  
Sbjct: 61  PIHPSKTCFVHRLMRIMIHSGFFSQQNHDMENQLDAKYVLTDASVLLLKNHPMSVTPFLH 120

Query: 84  --------------------------DTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLAT 117
                                     +TAHG  LW+YAG +PK NN FN+AMASDA   T
Sbjct: 121 AMLDPILTNPWNQFSTWFKNGDTTPFETAHGMMLWDYAGADPKHNNLFNDAMASDARFVT 180

Query: 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLK 177
           S++I KCK +F GL SLVDVGGG GT AKAIAK+FP++EC  FDLPHVV+GL     NLK
Sbjct: 181 SLVIEKCKGMFMGLESLVDVGGGTGTMAKAIAKSFPRVECIVFDLPHVVSGLKGS-ENLK 239

Query: 178 YVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237
           YV GDMFEAI PADA+LLKWILHDWND+ECV ILKKCKEAIT  GK+GKVIIIDM+ EN+
Sbjct: 240 YVAGDMFEAIPPADAILLKWILHDWNDKECVDILKKCKEAITRKGKEGKVIIIDMVVENE 299

Query: 238 KGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           K DD+S+ETQLFFDMLMMVL+TG ER +KEW KL + AG+++YKI P+LGLRSLIE+YP
Sbjct: 300 KRDDESVETQLFFDMLMMVLVTGKERSKKEWAKLISSAGYNNYKITPVLGLRSLIEIYP 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551928|ref|XP_003544324.1| PREDICTED: LOW QUALITY PROTEIN: 8-hydroxyquercetin 8-O-methyltransferase-like [Glycine max]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/356 (55%), Positives = 239/356 (67%), Gaps = 65/356 (18%)

Query: 5   DGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINP 64
           D +H  +LL AQTH+WNHIF+FINSM LKC + LGIPDII  +G+PM L+ L+++L I+P
Sbjct: 5   DEEHAAKLLRAQTHIWNHIFSFINSMVLKCVVDLGIPDIIHNYGQPMPLSNLIASLPIHP 64

Query: 65  SKS-------RCQLRTWF---QNDD--------------------------PTPF----- 83
           SK+       R  + + F   QN D                           TPF     
Sbjct: 65  SKTCFVHRLMRIMIHSGFFSQQNHDLENELEAKYVLTDARSVQLLKNHPMSVTPFLHAML 124

Query: 84  -----------------------DTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVM 120
                                  +TAHGK  W+YAG +PKLN+ FN+AMASDA   TS++
Sbjct: 125 DPVLTNPWNQFSTWFKNGDPTPFETAHGKMFWDYAGADPKLNHLFNDAMASDARFVTSLV 184

Query: 121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVG 180
           I KCK VF GL SLVDVGGG GT AKAIA +FP++EC  FDLPHVV+GL     NLKYV 
Sbjct: 185 IEKCKGVFMGLESLVDVGGGTGTMAKAIAXSFPRVECIVFDLPHVVSGLKGS-ENLKYVA 243

Query: 181 GDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD 240
           GDMFEAI PADA+LLKWILHDWND+ECV ILKKCKEAIT  GK+GKVIIIDM+ E++K D
Sbjct: 244 GDMFEAIPPADAILLKWILHDWNDKECVDILKKCKEAITRKGKEGKVIIIDMVVEDEKRD 303

Query: 241 DKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           D+S+ETQLFFDM MMVL+TG ER +KEWTKL + AG+++YKI P+ GLRSLIE+YP
Sbjct: 304 DESVETQLFFDMQMMVLVTGKERSKKEWTKLISSAGYNNYKITPVFGLRSLIEIYP 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
UNIPROTKB|Q6VMW0	366	OMT2 "8-hydroxyquercetin 8-O-m	0.760	0.614	0.511	4e-81
UNIPROTKB|B0EXJ8	355	16OMT "Tabersonine 16-O-methyl	0.824	0.687	0.501	9.7e-74
UNIPROTKB|Q84KK4	365	HI4'OMT "Isoflavone 4'-O-methy	0.75	0.608	0.486	3.7e-72
UNIPROTKB|Q8GSN1	348	Q8GSN1 "Myricetin O-methyltran	0.817	0.695	0.473	4.7e-72
UNIPROTKB|Q84KK5	357	D7OMT "Isoflavone 7-O-methyltr	0.827	0.686	0.454	2.6e-67
UNIPROTKB|A8QW53	374	OMT3 "5-pentadecatrienyl resor	0.820	0.649	0.460	9.8e-66
UNIPROTKB|Q84KK6	367	HI4'OMT "Isoflavone 4'-O-methy	0.875	0.705	0.449	1.3e-54
TAIR|locus:2132806	382	AT4G35160 [Arabidopsis thalian	0.719	0.557	0.401	5.3e-49
TAIR|locus:2132801	325	AT4G35150 [Arabidopsis thalian	0.695	0.633	0.391	2.6e-45
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.807	0.658	0.332	5.7e-38

UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)]

 Score = 608 (219.1 bits), Expect = 4.0e-81, Sum P(2) = 4.0e-81
 Identities = 116/227 (51%), Positives = 156/227 (68%)

Query:    71 LRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEG 130
             L  WF+ND    FDT +G T  EYA  + +LN  FNEAMA DA    S++  +C+++F+G
Sbjct:   141 LSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSILTTECREIFDG 200

Query:   131 LNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPA 190
             L S+VDV              FP +ECT  DLP+VV GL     NL +V GDMF+ I  A
Sbjct:   201 LESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGS-ENLSFVSGDMFDFIPHA 259

Query:   191 DAVLLKWILHDWNDEECVKILKKCKEAIT-SDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
             DA+ +K+ILHDWNDEECVKILKKCKEAI+ S+    K+I+++++ E++K   ++ ET+LF
Sbjct:   260 DAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKETHEATETKLF 319

Query:   250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
             FDM M+ ++TG ER EKEW KLF  AGF++YKI  +LGLRS+IEV+P
Sbjct:   320 FDMQMLAIITGKERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366

GO:0009812 "flavonoid metabolic process" evidence=IDA

GO:0030761 "8-hydroxyquercitin 8-O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 606 (218.4 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
 Identities = 127/253 (50%), Positives = 163/253 (64%)

Query:    49 KPMTLNELVSALTINPSKSRC--QLRTWFQNDDP--TPFDTAHGKTLWEYAGDEPKLNNF 104
             +P+ L  +V  +  +P + +    L  W+QN+D   T F+TAHGK  W Y+ +  +   F
Sbjct:   107 EPLNLRGIVLTMA-DPVQLKAWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEF 165

Query:   105 FNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPH 164
             FNEAMASD+ L + ++I + K +FEGL SLVD+              FP+L+CT FDLPH
Sbjct:   166 FNEAMASDSQLISKLLIGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPH 225

Query:   165 VVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKK 224
             VV  L+S   N+++V GDMFE I  A+A+ LKWILHDWNDE+CVKILK CK+AI + G  
Sbjct:   226 VVANLESK-ENVEFVAGDMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKG-- 282

Query:   225 GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIP 284
             GKVIIIDM+  + K DD  ++TQ   DM M+V     ER EKEW  LF  AGFSDYKI P
Sbjct:   283 GKVIIIDMVMYSDKKDDHLVKTQTSMDMAMLVNFAAKERCEKEWAFLFKEAGFSDYKIYP 342

Query:   285 ILGL-RSLIEVYP 296
              L   RSLIEVYP
Sbjct:   343 KLDFTRSLIEVYP 355

GO:0005737 "cytoplasm" evidence=IDA

GO:0009821 "alkaloid biosynthetic process" evidence=IDA

GO:0030766 "11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

UNIPROTKB|Q84KK4 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Lotus japonicus (taxid:34305)]

 Score = 553 (199.7 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 112/230 (48%), Positives = 153/230 (66%)

Query:    72 RTWF--QNDDPTPFDTAHGKTLWEYAGDEPKLN--NFFNEAMASDAWLATSVMIHKCKDV 127
             + WF   N++ T F++A G++ WE+   E + +  + F EAMA+D+ +   + + +CK V
Sbjct:   139 KKWFLEDNEELTLFESATGESFWEFLNKETESDTLSMFQEAMAADSHMF-KLALKECKHV 197

Query:   128 FEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAI 187
             FEGL SLVDV              FP ++CT FD P VV  L  D  NL +VGGDMF+++
Sbjct:   198 FEGLGSLVDVAGGRGGVTKLIREAFPHVKCTVFDQPQVVANLTGD-ENLNFVGGDMFKSV 256

Query:   188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSI-ET 246
              PADAVLLKW+LHDWNDE  +KILK CKEAI+  GK+GKVIIID I  ++  DD+ + E 
Sbjct:   257 PPADAVLLKWVLHDWNDELSLKILKNCKEAISGRGKEGKVIIID-ISIDETSDDRELTEL 315

Query:   247 QLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
             +L +D++M+ +  G ER++KEW KL   AGFS YKI PI G +SLIEV+P
Sbjct:   316 KLDYDLVMLTMFNGKEREKKEWEKLIYDAGFSSYKITPICGFKSLIEVFP 365

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)]

 Score = 576 (207.8 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 118/249 (47%), Positives = 161/249 (64%)

Query:    53 LNELVSALTINPS---KSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAM 109
             LN +   L +N     K+   +  WFQN+D T F+TAHGK  W++ G E K    F+  M
Sbjct:   102 LNSISMVLGVNQIAELKAWNAMSEWFQNEDLTAFETAHGKNFWDF-GAEDKYGKNFDGVM 160

Query:   110 ASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGL 169
             A+D+ L + ++I +   +FEGL+SLVDV              FP L+CT FDLPHVV  L
Sbjct:   161 AADSILVSKMLIPEFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANL 220

Query:   170 DSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII 229
             +S   NL++VGGDMFE I  A+A+LLKWILHDW DEECVK+LK C++AI    K GKVI+
Sbjct:   221 EST-ENLEFVGGDMFEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVIL 279

Query:   230 ID-MIRENKKGD-DKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILG 287
             I+ ++ ++KK + +++++ Q+  D+ MMV  T  ER E+EW  LF  AGFS YKI P++ 
Sbjct:   280 IETVLMDSKKHENEEAVKAQISSDIDMMVFFTAKERTEEEWATLFREAGFSGYKIFPMID 339

Query:   288 LRSLIEVYP 296
              RS IEVYP
Sbjct:   340 FRSPIEVYP 348

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q84KK5 D7OMT "Isoflavone 7-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 555 (200.4 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
 Identities = 114/251 (45%), Positives = 153/251 (60%)

Query:    48 GKPMTLNELVSALTINP--SKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFF 105
             G  + L  +V  + ++P  S S  QL+ W   +D T F  + G   WE+  + P+ N  F
Sbjct:   111 GSELCLAPMVECV-LDPTLSGSYHQLKKWIYEEDLTLFGVSLGSHFWEFLNENPEYNKSF 169

Query:   106 NEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHV 165
             N+AMASD+ +  ++ +  C   FEG+ S+VDV              FP L+C  FD P V
Sbjct:   170 NDAMASDSQMI-NLALRDCNSGFEGVESIVDVGGGIGTTAKIICDTFPNLKCIVFDRPKV 228

Query:   166 VNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKG 225
             V  L S   NL YVGGDMF+++  ADAVLLKWILH+W D +C +IL+KCKEA++SDG+KG
Sbjct:   229 VENL-SGTNNLSYVGGDMFQSVPKADAVLLKWILHNWTDNDCRRILEKCKEAVSSDGEKG 287

Query:   226 KVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285
             KVIII+M+    + + +   T+L  D+  M  L G ER E+EW KLF  AGF DYKI P+
Sbjct:   288 KVIIIEMVINENQDEHEITGTKLLMDV-NMACLNGKERSEEEWKKLFIEAGFRDYKISPL 346

Query:   286 LGLRSLIEVYP 296
              G  SLIEVYP
Sbjct:   347 TGFLSLIEVYP 357

GO:0009717 "isoflavonoid biosynthetic process" evidence=IDA

GO:0033800 "isoflavone 7-O-methyltransferase activity" evidence=IDA

UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 578 (208.5 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
 Identities = 117/254 (46%), Positives = 162/254 (63%)

Query:    50 PMTLNELVSALTINPSKSRCQLRTWFQNDD----P--TPFDTAHGKTLWEYAGDEPKLNN 103
             PM LN ++S    +P      L  WF++D+    P   PF   +G TLWE    +  +N 
Sbjct:   125 PM-LNHVLSPFRDSPLSMG--LTAWFRHDEDEQAPGMCPFTLMYGTTLWEVCRRDDAINA 181

Query:   104 FFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLP 163
              FN AMA+D+     +++ +  +VF G++SLVDV              FP L+CT  DLP
Sbjct:   182 LFNNAMAADSNFLMQILLKEFSEVFLGIDSLVDVAGGVGGATMAIAAAFPCLKCTVLDLP 241

Query:   164 HVV-NGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDG 222
             HVV     S + N+++VGGDMFE+I PA+ VLLKWILHDW+++EC+KILK CK+AI S  
Sbjct:   242 HVVAKAPSSSIGNVQFVGGDMFESIPPANVVLLKWILHDWSNDECIKILKNCKQAIPSRD 301

Query:   223 KKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI 282
               GK+IIID++  +   D K +ETQ+ +D+ +M +  G ERDE+EW K+F  AGF DYKI
Sbjct:   302 AGGKIIIIDVVVGSDSSDTKLLETQVIYDLHLMKI-GGVERDEQEWKKIFLEAGFKDYKI 360

Query:   283 IPILGLRSLIEVYP 296
             +PILGLRS+IE+YP
Sbjct:   361 MPILGLRSIIELYP 374

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q84KK6 HI4'OMT "Isoflavone 4'-O-methyltransferase" [Glycyrrhiza echinata (taxid:46348)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 120/267 (44%), Positives = 164/267 (61%)

Query:    35 AIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC--QLRTWFQND-DPTPFDTAHGKTL 91
             A  L  P  +   GKP  L  +V    ++PS          WF+ D + T F++A G++ 
Sbjct:   104 AYALTPPSKLLVKGKPTCLASIVRG-ALHPSSLDMWRSSEKWFKEDKELTLFESATGESF 162

Query:    92 WEYAGDEPKLN--NFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXX 149
             W++   + +    + F EAMA+D+ +   + + +C+ VFEGL SLVDV            
Sbjct:   163 WDFLNKDSESGTLSMFQEAMAADSQMF-KLALKECRHVFEGLESLVDVGGGTGGVTKLIH 221

Query:   150 XXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK 209
               FP L+CT FD P VV  L  +  NLK+VGGDMF++I PADAVLLKW+LHDWNDE  +K
Sbjct:   222 EEFPHLKCTVFDQPQVVGNLSGN-ENLKFVGGDMFKSIPPADAVLLKWVLHDWNDELSLK 280

Query:   210 ILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT 269
             ILK  KEAI+  GK+GKVIIID+  +   GD +  E QL +D++M+ +  G ER++KEW 
Sbjct:   281 ILKNSKEAISGKGKEGKVIIIDISIDEASGDRELTELQLDYDLVMLTMFNGKEREKKEWE 340

Query:   270 KLFTYAGFSDYKIIPILGLRSLIEVYP 296
             KL + AGFS YKI PI G +SLIEV+P
Sbjct:   341 KLISDAGFSSYKITPICGFKSLIEVFP 367

GO:0009701 "isoflavonoid phytoalexin biosynthetic process" evidence=IDA

GO:0030746 "isoflavone 4'-O-methyltransferase activity" evidence=IDA

TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
 Identities = 90/224 (40%), Positives = 129/224 (57%)

Query:    80 PTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXX 139
             P PFD  HGK +W +A D P L++  NEAMA DA      +   C  +F+G+ ++VDV  
Sbjct:   160 PPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARRVVPRVAGACHGLFDGVTTMVDVGG 219

Query:   140 XXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWIL 199
                         FP ++   FDLPHV+   +  L  ++ V GDMF++I   DA+ +KW+L
Sbjct:   220 GTGETMGMLVKEFPWIKGFNFDLPHVIEVAEV-LDGVENVEGDMFDSIPACDAIFIKWVL 278

Query:   200 HDWNDEECVKILKKCKEAITSDGKKGKVIIID-MIRENKKG------DDKSIETQLFFDM 252
             HDW D++C+KILK CKEA+  +   GKV+I++ +I ENKK       D+K    +L  DM
Sbjct:   279 HDWGDKDCIKILKNCKEAVPPN--IGKVLIVESVIGENKKTMIVDERDEKLEHVRLMLDM 336

Query:   253 LMMV-LLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295
             +MM    TG ER  KEW  +   AGF+ Y++  I  ++SLI  Y
Sbjct:   337 VMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDVQSLIIAY 380

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 85/217 (39%), Positives = 123/217 (56%)

Query:    87 HGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXX 146
             HGK LW +A D    +   NEAMA DA      +   C+ +F+G+ ++VDV         
Sbjct:   110 HGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGETMG 169

Query:   147 XXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEE 206
                  FP ++   FDLPHV+  +   L  ++ V GDMF++I  +DAV++KW+LHDW D++
Sbjct:   170 ILVKEFPWIKGFNFDLPHVIE-VAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDKD 228

Query:   207 CVKILKKCKEAITSDGKKGKVIIIDMIRENKKG-------DDKSIETQLFFDMLMMV-LL 258
             C+KILK CKEA+  +   GKV+I++ +   KK        DDK    +L  DM+MMV   
Sbjct:   229 CIKILKNCKEAVLPN--IGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHTS 286

Query:   259 TGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295
             TG ER  KEW  + T AGF+ Y++     ++SLI  Y
Sbjct:   287 TGKERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 85/256 (33%), Positives = 133/256 (51%)

Query:    49 KPMTLNE---LVSALTINPSKSRCQLRTWFQNDDPT-----PFDTAHGKTLWEYAGDEPK 100
             K +T NE    ++AL +  ++ +  + +W+   D       PF+ A+G + +EY G +P+
Sbjct:   111 KYLTKNEDGVSIAALCLM-NQDKVLMESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPR 169

Query:   101 LNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCF 160
              N  FN  M++ + +    ++   K  FEGL SLVDV              +P L+   F
Sbjct:   170 FNKVFNNGMSNHSTITMKKILETYKG-FEGLTSLVDVGGGIGATLKMIVSKYPNLKGINF 228

Query:   161 DLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITS 220
             DLPHV+    S    +++VGGDMF ++   DA+ +KWI HDW+DE CVK LK C E++  
Sbjct:   229 DLPHVIEDAPSH-PGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPE 287

Query:   221 DGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTG-TERDEKEWTKLFTYAGFSD 279
             DGK   VI+ + I         S +  +  D +M+    G  ER EKE+  L   +GF  
Sbjct:   288 DGK---VILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKG 344

Query:   280 YKII-PILGLRSLIEV 294
              K++    G+ +LIE+
Sbjct:   345 IKVVCDAFGV-NLIEL 359

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018662001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (357 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	2e-79
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	6e-15
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	2e-14
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	4e-04

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  240 bits (614), Expect = 2e-79
 Identities = 90/204 (44%), Positives = 125/204 (61%), Gaps = 7/204 (3%)

Query: 70  QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFE 129
            L+   +   P PF+ A G   +EY G +P+ N  FN AMA+ + L    ++ +    F 
Sbjct: 43  HLKDAVREGGP-PFERAFGMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKIL-ETAFDFS 100

Query: 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISP 189
           GL+SLVDVGGG G  A AI +A+P ++   FDLPHV+         +++VGGD FE++  
Sbjct: 101 GLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLPHVIADA-PSADRVEFVGGDFFESVPE 159

Query: 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
           ADA+LLKW+LHDW+DE+CVKILK+C EA+      GKVI+++M+      DD   E  L 
Sbjct: 160 ADAILLKWVLHDWSDEDCVKILKRCYEALPPG---GKVIVVEMVLPEDPDDDLETE-VLL 215

Query: 250 FDMLMMVLLTGTERDEKEWTKLFT 273
            D+ M+VL  G ER EKEW KL +
Sbjct: 216 LDLNMLVLNGGKERTEKEWRKLLS 239

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 67.2 bits (165), Expect = 6e-15
 Identities = 25/39 (64%), Positives = 31/39 (79%), Gaps = 1/39 (2%)

Query: 30 MTLKCAIQLGIPDIISKHGKPMTLNELVSAL-TINPSKS 67
          M LKCAI+LGIPDII+KHGKP++ +EL S L T+NP   
Sbjct: 1  MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAP 39

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 72.0 bits (176), Expect = 2e-14
 Identities = 41/137 (29%), Positives = 78/137 (56%), Gaps = 12/137 (8%)

Query: 104 FFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLP 163
           +F E   S+A  A  +++ + K   +G+  ++DVGGGIG  + A+ K FP+L+ T  +LP
Sbjct: 125 YFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP 182

Query: 164 HVVNGLDSDLA------NLKYVGGDMF-EAISPADAVLLKWILHDWNDEECVKILKKCKE 216
             ++ ++ + A       ++ +  D++ E+   ADAVL   IL+  N++    + KK  +
Sbjct: 183 GAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFD 242

Query: 217 AITSDGKKGKVIIIDMI 233
           A+ S    G+++I+DM+
Sbjct: 243 AMRSG---GRLLILDMV 256

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV-----NGLDSDLANLKYVGGDMFEA 186
            ++D+G G G+ A  +A+ FP    T  DL P ++     N   +    + +V GD  +A
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63

Query: 187 IS---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGK 223
           +      DAV +     D      +++L      +   G+
Sbjct: 64  LDLLEGFDAVFIGGGGGD-----LLELLDALASLLKPGGR 98

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.81
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.8
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.8
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.79
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.79
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.78
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.77
PLN02244	340	tocopherol O-methyltransferase	99.76
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.73
PLN02490	340	MPBQ/MSBQ methyltransferase	99.72
PLN02336	475	phosphoethanolamine N-methyltransferase	99.71
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.71
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.71
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.7
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.7
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.7
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.7
PRK11207	197	tellurite resistance protein TehB; Provisional	99.68
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.68
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.67
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.66
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.66
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.66
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.65
PRK08317	241	hypothetical protein; Provisional	99.65
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.65
PRK06922	677	hypothetical protein; Provisional	99.64
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.63
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.61
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.61
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.61
PRK06202	232	hypothetical protein; Provisional	99.59
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.59
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.57
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.57
PRK05785	226	hypothetical protein; Provisional	99.57
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.56
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.56
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.56
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.56
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.55
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.55
PLN03075	296	nicotianamine synthase; Provisional	99.54
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.54
PLN02336	475	phosphoethanolamine N-methyltransferase	99.53
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.53
PRK12335	287	tellurite resistance protein TehB; Provisional	99.53
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.52
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.52
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.51
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.5
TIGR03438	301	probable methyltransferase. This model represents	99.49
PRK04266	226	fibrillarin; Provisional	99.48
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.48
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.48
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.46
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.46
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.46
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.44
KOG4300	252	consensus Predicted methyltransferase [General fun	99.43
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.42
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.41
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.4
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.39
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.38
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.37
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.37
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.35
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.34
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.34
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.33
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.32
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.31
PTZ00146	293	fibrillarin; Provisional	99.3
KOG2361	264	consensus Predicted methyltransferase [General fun	99.27
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.27
PRK14968	188	putative methyltransferase; Provisional	99.26
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.26
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.26
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.26
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.25
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.25
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.24
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.24
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.22
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.22
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.22
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.22
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.2
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.19
COG4123	248	Predicted O-methyltransferase [General function pr	99.18
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.17
PHA03411	279	putative methyltransferase; Provisional	99.17
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.16
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.14
KOG1271	227	consensus Methyltransferases [General function pre	99.14
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.14
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.13
PRK04457	262	spermidine synthase; Provisional	99.12
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.12
PRK07402	196	precorrin-6B methylase; Provisional	99.11
PRK14967	223	putative methyltransferase; Provisional	99.1
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.06
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.06
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.06
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.05
KOG2899	288	consensus Predicted methyltransferase [General fun	99.05
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.02
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.02
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.02
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.0
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.97
PRK00811	283	spermidine synthase; Provisional	98.94
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.94
COG2890	280	HemK Methylase of polypeptide chain release factor	98.94
TIGR00438	188	rrmJ cell division protein FtsJ.	98.89
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.89
PRK01581	374	speE spermidine synthase; Validated	98.88
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.87
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.86
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.85
PLN02366	308	spermidine synthase	98.84
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.83
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.83
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.83
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.82
PRK03612	521	spermidine synthase; Provisional	98.81
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.8
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.79
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.78
KOG3010	261	consensus Methyltransferase [General function pred	98.77
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.77
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.75
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.73
PLN02672	1082	methionine S-methyltransferase	98.73
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.71
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.71
PHA03412	241	putative methyltransferase; Provisional	98.7
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.68
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.65
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.64
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.62
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.61
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.6
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.6
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.58
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.57
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.56
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.53
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.53
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.53
PLN02476	278	O-methyltransferase	98.52
COG4122	219	Predicted O-methyltransferase [General function pr	98.52
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.5
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.5
PRK04148	134	hypothetical protein; Provisional	98.5
PLN02823	336	spermine synthase	98.48
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.45
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.44
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.43
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.43
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.42
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.4
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.36
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.35
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.34
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.34
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.32
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.3
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.29
PRK00536	262	speE spermidine synthase; Provisional	98.28
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.28
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.27
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.26
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.25
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.25
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.24
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.23
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.23
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.21
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.19
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.19
KOG2940	325	consensus Predicted methyltransferase [General fun	98.08
KOG1331	293	consensus Predicted methyltransferase [General fun	98.06
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.06
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.97
COG2521	287	Predicted archaeal methyltransferase [General func	97.97
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.97
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.94
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.87
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.87
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	97.86
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.79
KOG2904	328	consensus Predicted methyltransferase [General fun	97.75
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.73
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.69
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.68
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.67
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.65
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.62
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.59
PF13679	141	Methyltransf_32: Methyltransferase domain	97.58
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.57
COG4798	238	Predicted methyltransferase [General function pred	97.54
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.47
COG3897	218	Predicted methyltransferase [General function pred	97.45
COG4076	252	Predicted RNA methylase [General function predicti	97.44
KOG3115	249	consensus Methyltransferase-like protein [General	97.44
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.44
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.42
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.42
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.41
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.4
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.39
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.34
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.34
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.32
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.31
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.29
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.28
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.23
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.21
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.2
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.16
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.06
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.06
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.0
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.99
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.94
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.91
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.9
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	96.89
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.89
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.87
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.84
COG4301	321	Uncharacterized conserved protein [Function unknow	96.81
COG3315	297	O-Methyltransferase involved in polyketide biosynt	96.8
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.79
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	96.7
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.69
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.58
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.45
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.45
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.29
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.11
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.07
COG2520	341	Predicted methyltransferase [General function pred	95.87
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.85
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	95.8
COG1041	347	Predicted DNA modification methylase [DNA replicat	95.58
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.57
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.51
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.46
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.3
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	95.28
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	95.26
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	95.15
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.12
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.86
COG0742	187	N6-adenine-specific methylase [DNA replication, re	94.78
KOG2730	263	consensus Methylase [General function prediction o	94.76
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	94.74
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	94.73
KOG2352	482	consensus Predicted spermine/spermidine synthase [	94.72
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.53
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	94.25
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	94.19
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	94.12
KOG3924	419	consensus Putative protein methyltransferase invol	94.07
PRK10742	250	putative methyltransferase; Provisional	93.78
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	93.56
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	93.41
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	93.28
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	93.26
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	93.11
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	92.89
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	92.86
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	92.7
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.59
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	92.34
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	92.28
PF07109	97	Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl	91.78
KOG1501	636	consensus Arginine N-methyltransferase [General fu	91.62
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	91.49
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	90.85
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	90.55
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	90.54
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	90.35
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.32
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	90.16
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	89.85
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	89.81
COG1255	129	Uncharacterized protein conserved in archaea [Func	89.35
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	89.15
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	88.35
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	88.18
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	87.87
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	86.47
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	85.19
COG1565	370	Uncharacterized conserved protein [Function unknow	85.17
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	85.0
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	84.76
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	84.67
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	84.51
COG3413	215	Predicted DNA binding protein [General function pr	84.36
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	84.15
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	83.76
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	83.64
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	83.51
COG2345	218	Predicted transcriptional regulator [Transcription	81.93
COG4189	308	Predicted transcriptional regulator [Transcription	81.83
PRK15431	78	ferrous iron transport protein FeoC; Provisional	81.5
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	81.49
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	81.37
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	81.29
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	80.92
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	80.9
PRK11169	164	leucine-responsive transcriptional regulator; Prov	80.76
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	80.47

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=1.7e-37  Score=265.31  Aligned_cols=197  Identities=38%  Similarity=0.746  Sum_probs=173.3

Q ss_pred             hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhch-HHHHHhcccccCCCCEEEEecCCchHHHHHH
Q 022515           70 QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLAT-SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAI  148 (296)
Q Consensus        70 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l  148 (296)
                      .|.+++++|+ ++|...+|.++|+++.++++..+.|..+|...+.... ..+...++  +++..+|||||||+|.++.++
T Consensus        42 ~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l  118 (241)
T PF00891_consen   42 RLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIAL  118 (241)
T ss_dssp             GHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHH
T ss_pred             HHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHH
Confidence            6778888887 8999999999999999999999999999999888777 77788888  788899999999999999999


Q ss_pred             HHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCC--cE
Q 022515          149 AKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKK--GK  226 (296)
Q Consensus       149 ~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g--G~  226 (296)
                      +++||+++++++|+|++++.+++ .+||++++|||++++|.+|+|++++|||+|+|+++.+||++++++|+|   |  |+
T Consensus       119 ~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~~D~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~  194 (241)
T PF00891_consen  119 ARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPVADVYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGR  194 (241)
T ss_dssp             HHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSSESEEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEE
T ss_pred             HHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhccccceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCe
Confidence            99999999999999999999984 999999999999988889999999999999999999999999999999   8  99


Q ss_pred             EEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515          227 VIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT  273 (296)
Q Consensus       227 lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~  273 (296)
                      |+|+|.+.++....+........+|++|++.++|++||.+||++||+
T Consensus       195 llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll~  241 (241)
T PF00891_consen  195 LLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALLK  241 (241)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHHH
T ss_pred             EEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence            99999999988776422212258999999999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=261.26  Aligned_cols=275  Identities=33%  Similarity=0.522  Sum_probs=226.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCC-----CCcchhhhHH----------------
Q 022515           14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTI-----NPSKSRCQLR----------------   72 (296)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~-----~~~~l~~~l~----------------   72 (296)
                      ....+++++++++..++++.+|+|||+||.|+++ ++  ..|+|..+..     +|..+.|.|+                
T Consensus         5 ~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~   81 (342)
T KOG3178|consen    5 EASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGE   81 (342)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecce
Confidence            4456889999999999999999999999999974 22  6677766663     3444555111                


Q ss_pred             ----------------------------------------HhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHcc
Q 022515           73 ----------------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASD  112 (296)
Q Consensus        73 ----------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~  112 (296)
                                                              +.++.+. .+|..++|..++++...+......|+++|...
T Consensus        82 ~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l  160 (342)
T KOG3178|consen   82 VYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFL  160 (342)
T ss_pred             eeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHH
Confidence                                                    1111111 34556667677888888888888999999988


Q ss_pred             chhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCCccce
Q 022515          113 AWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADA  192 (296)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~  192 (296)
                      +......+++.+.. |++....||||||.|..+..++..||+++++.+|+|.+++.+......|+.+.||++++.|..|+
T Consensus       161 ~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da  239 (342)
T KOG3178|consen  161 STLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA  239 (342)
T ss_pred             HHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence            88887778887763 77889999999999999999999999999999999999999985227799999999999999999


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC-CCCCchhhhhhhhhhhhhhhc-CccccCHHHHHH
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK-KGDDKSIETQLFFDMLMMVLL-TGTERDEKEWTK  270 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~g~~rt~~e~~~  270 (296)
                      |++.||||||+|++|+++|+||+++|+|   ||+|++.|.+.++. ......+......|+.|+... +|++|+.+|+..
T Consensus       240 I~mkWiLhdwtDedcvkiLknC~~sL~~---~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~  316 (342)
T KOG3178|consen  240 IWMKWILHDWTDEDCVKILKNCKKSLPP---GGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQA  316 (342)
T ss_pred             EEEEeecccCChHHHHHHHHHHHHhCCC---CCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHh
Confidence            9999999999999999999999999999   99999999988852 222111233457788888875 699999999999


Q ss_pred             HHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          271 LFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      ++.++||.+..+.-.+..+++|+++|
T Consensus       317 l~~~~gF~~~~~~~~~~~~~~Ie~~k  342 (342)
T KOG3178|consen  317 LLPEEGFPVCMVALTAYSYSVIEFHK  342 (342)
T ss_pred             cchhhcCceeEEEeccCccchheeCC
Confidence            99999999999998888999999876

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=1.5e-33  Score=249.03  Aligned_cols=245  Identities=24%  Similarity=0.409  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh---------------------cCCCCh---
Q 022515           27 INSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ---------------------NDDPTP---   82 (296)
Q Consensus        27 ~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~---------------------~~~~~~---   82 (296)
                      +...+|++|++|||||+|++  +|.|++|||+++|++++.+++.|+....                     .+.+..   
T Consensus         2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~   79 (306)
T TIGR02716         2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNL   79 (306)
T ss_pred             chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCCChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhh
Confidence            35789999999999999987  8999999999999999999885543321                     010000   


Q ss_pred             ----hhhh----------------cCCCchhhcccCch---HHHHHHHHHH-ccchhchHHHHHhcccccCCCCEEEEec
Q 022515           83 ----FDTA----------------HGKTLWEYAGDEPK---LNNFFNEAMA-SDAWLATSVMIHKCKDVFEGLNSLVDVG  138 (296)
Q Consensus        83 ----~~~~----------------~g~~~~~~~~~~~~---~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~vLDvG  138 (296)
                          +...                .+.+.|......++   ....|.+.|. .......+.+++.++  +++..+|||||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlDiG  157 (306)
T TIGR02716        80 HQTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVG  157 (306)
T ss_pred             hcCchHHHHHHHHHHHHHhHHHHhcCCcccccccCCCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEEeC
Confidence                0000                01111111111111   1123444443 333344556667666  77889999999


Q ss_pred             CCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehhhhccCCchHHHHHH
Q 022515          139 GGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKWILHDWNDEECVKIL  211 (296)
Q Consensus       139 gG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~~~~~iL  211 (296)
                      ||+|.+++.+++++|+++++++|+|++++.+++      ..+||+++.+|+++ ++|++|+|++++++|+|+++.+.++|
T Consensus       158 ~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il  237 (306)
T TIGR02716       158 GGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMC  237 (306)
T ss_pred             CchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHH
Confidence            999999999999999999999999999887754      46899999999997 67779999999999999999889999


Q ss_pred             HHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh----hhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515          212 KKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM----LMMVLLTGTERDEKEWTKLFTYAGFSDYKII  283 (296)
Q Consensus       212 ~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  283 (296)
                      ++++++|+|   ||+++|.|.+.++.... .+   ..+.+.    .+.... ...++.++|.++|+++||+.+++.
T Consensus       238 ~~~~~~L~p---gG~l~i~d~~~~~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~~  305 (306)
T TIGR02716       238 KKAFDAMRS---GGRLLILDMVIDDPENP-NF---DYLSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMV  305 (306)
T ss_pred             HHHHHhcCC---CCEEEEEEeccCCCCCc-hh---hHHHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEec
Confidence            999999999   99999999887765432 11   112221    111111 123357999999999999988754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00740 methyltransferase, putative

Probab=99.81  E-value=8.9e-20  Score=155.71  Aligned_cols=149  Identities=16%  Similarity=0.216  Sum_probs=116.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~v  198 (296)
                      .+..+|||||||+|.++..+++.+  |+.+++++|+ +.+++.|++      ...+++++.+|+.+ +.+.+|++++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            466799999999999999999974  7899999999 999998875      24589999999998 6677999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh------------------cCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL------------------LTG  260 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g  260 (296)
                      +|++++++...+|++++++|+|   ||.+++.|.+..+.....     .....+++...                  ..-
T Consensus       132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  203 (239)
T TIGR00740       132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKIN-----HLLIDLHHQFKRANGYSELEISQKRTALENVM  203 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCC---CeEEEEeecccCCCHhHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence            9999988888999999999999   999999998765543211     11111111100                  011


Q ss_pred             cccCHHHHHHHHHhcCCceeEEEEc
Q 022515          261 TERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       261 ~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      ...|.+++.+++++|||+.+++...
T Consensus       204 ~~~s~~~~~~~l~~aGF~~~~~~~~  228 (239)
T TIGR00740       204 RTDSIETHKARLKNVGFSHVELWFQ  228 (239)
T ss_pred             CCCCHHHHHHHHHHcCCchHHHHHH
Confidence            3459999999999999997765443

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.80  E-value=1.5e-18  Score=145.32  Aligned_cols=160  Identities=18%  Similarity=0.309  Sum_probs=121.7

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCCc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AISP  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p~  189 (296)
                      -+.++....  ..++.+|||||||||.++..+++..+..+++++|. +.|++.|++     ....|+|+.+|..+ |+|+
T Consensus        40 r~~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D  117 (238)
T COG2226          40 RRALISLLG--IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD  117 (238)
T ss_pred             HHHHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC
Confidence            344444443  34689999999999999999999999999999999 999999987     11229999999999 8884


Q ss_pred             --cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhhhcC------c
Q 022515          190 --ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMVLLT------G  260 (296)
Q Consensus       190 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------g  260 (296)
                        ||+|.+++.||+++|.+  +.|++++|+|||   ||++++.|...+......   .....+... .+-..+      .
T Consensus       118 ~sFD~vt~~fglrnv~d~~--~aL~E~~RVlKp---gG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~  189 (238)
T COG2226         118 NSFDAVTISFGLRNVTDID--KALKEMYRVLKP---GGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDA  189 (238)
T ss_pred             CccCEEEeeehhhcCCCHH--HHHHHHHHhhcC---CeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecCh
Confidence              99999999999999876  789999999999   999999998877553321   111111111 110111      1


Q ss_pred             -----------cccCHHHHHHHHHhcCCceeEEEEcC
Q 022515          261 -----------TERDEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       261 -----------~~rt~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                                 +..+.+++.++++++||+.+......
T Consensus       190 ~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~  226 (238)
T COG2226         190 EAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLT  226 (238)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeee
Confidence                       12278999999999999988866553

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.80  E-value=1.5e-19  Score=152.70  Aligned_cols=158  Identities=20%  Similarity=0.392  Sum_probs=82.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~  197 (296)
                      ..++.+|||||||||.++..+++.. |+.+++++|+ +.|++.|++     ...+|+++.+|..+ |++  .||+|++++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            4567899999999999999999875 6789999999 999999986     34599999999999 776  399999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-------cCc----------
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-------LTG----------  260 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g----------  260 (296)
                      .+|+++|..  +.|++++|+|||   ||+++|+|...+....      ....+.+++...       ..+          
T Consensus       125 glrn~~d~~--~~l~E~~RVLkP---GG~l~ile~~~p~~~~------~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~  193 (233)
T PF01209_consen  125 GLRNFPDRE--RALREMYRVLKP---GGRLVILEFSKPRNPL------LRALYKFYFKYILPLIGRLLSGDREAYRYLPE  193 (233)
T ss_dssp             -GGG-SSHH--HHHHHHHHHEEE---EEEEEEEEEEB-SSHH------HHHHHHH-------------------------
T ss_pred             hHHhhCCHH--HHHHHHHHHcCC---CeEEEEeeccCCCCch------hhceeeeeeccccccccccccccccccccccc
Confidence            999999865  689999999999   9999999988765321      111222221100       011          


Q ss_pred             ---cccCHHHHHHHHHhcCCceeEEEEcC-CcceEEEEeC
Q 022515          261 ---TERDEKEWTKLFTYAGFSDYKIIPIL-GLRSLIEVYP  296 (296)
Q Consensus       261 ---~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~  296 (296)
                         ...+.+++.++++++||+.++..+.. |...+..++|
T Consensus       194 Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  194 SIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             ----------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccCC
Confidence               11278999999999999999887763 5555655543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.79  E-value=3.7e-18  Score=147.39  Aligned_cols=156  Identities=16%  Similarity=0.249  Sum_probs=120.7

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~  190 (296)
                      ..++..+.  +.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++   ..++++++.+|+.+ +++  .|
T Consensus        42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F  118 (263)
T PTZ00098         42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF  118 (263)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence            45566665  6788999999999999999998876 679999999 889888875   35689999999987 665  49


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++..++||++.++...+|++++++|+|   ||++++.+.........   ..  ....  +.........+.+++.+
T Consensus       119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~d~~~~~~~~~---~~--~~~~--~~~~~~~~~~~~~~~~~  188 (263)
T PTZ00098        119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLITDYCADKIENW---DE--EFKA--YIKKRKYTLIPIQEYGD  188 (263)
T ss_pred             EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEEEeccccccCc---HH--HHHH--HHHhcCCCCCCHHHHHH
Confidence            999999999888876677999999999999   99999999866543211   01  1111  00011223458899999


Q ss_pred             HHHhcCCceeEEEEcC
Q 022515          271 LFTYAGFSDYKIIPIL  286 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~  286 (296)
                      +|+++||++++...+.
T Consensus       189 ~l~~aGF~~v~~~d~~  204 (263)
T PTZ00098        189 LIKSCNFQNVVAKDIS  204 (263)
T ss_pred             HHHHCCCCeeeEEeCc
Confidence            9999999999987754

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.79  E-value=3.8e-18  Score=147.16  Aligned_cols=160  Identities=19%  Similarity=0.201  Sum_probs=119.1

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC--------CCCCeeEEeccCCC-CCC--ccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS--------DLANLKYVGGDMFE-AIS--PADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~-~~p--~~D~v~  194 (296)
                      ..++.+|||||||+|.++..+++.+ |..+++++|+ ++|++.|++        ..++++++.+|+.+ +++  .||+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            4567899999999999999998875 6689999999 999998864        13589999999988 665  399999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh-hhh---hhhhcC-----------
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF-DML---MMVLLT-----------  259 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~-----------  259 (296)
                      +..++|++++..  ++|++++++|||   ||++++.|...++.....   ....++ ...   .....+           
T Consensus       151 ~~~~l~~~~d~~--~~l~ei~rvLkp---GG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s  222 (261)
T PLN02233        151 MGYGLRNVVDRL--KAMQEMYRVLKP---GSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSS  222 (261)
T ss_pred             EecccccCCCHH--HHHHHHHHHcCc---CcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHH
Confidence            999999998764  789999999999   999999998755432110   110110 000   000001           


Q ss_pred             -ccccCHHHHHHHHHhcCCceeEEEEcC-CcceEEEEe
Q 022515          260 -GTERDEKEWTKLFTYAGFSDYKIIPIL-GLRSLIEVY  295 (296)
Q Consensus       260 -g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~  295 (296)
                       ....+.+++.++++++||+.++..... +...+..++
T Consensus       223 ~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  260 (261)
T PLN02233        223 INEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT  260 (261)
T ss_pred             HHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence             123599999999999999999887765 445566554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.78  E-value=2.1e-18  Score=147.77  Aligned_cols=146  Identities=16%  Similarity=0.255  Sum_probs=113.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHH--HCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAK--AFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~v  198 (296)
                      .+..+|||||||+|..+..+++  .+|+.+++++|+ +.|++.|++      ...+++++.+|+.+ +.+++|+|++..+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            4668999999999999999988  468999999999 999999876      24589999999988 6667999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-hcC-----------------c
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-LLT-----------------G  260 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------g  260 (296)
                      +|++++++...++++++++|+|   ||.+++.|.+..+.....+     ..+.++... ..+                 -
T Consensus       135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~e~~~~~~~~~~~-----~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~  206 (247)
T PRK15451        135 LQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKVGE-----LLFNMHHDFKRANGYSELEISQKRSMLENVM  206 (247)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCCCcchhHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence            9999987778999999999999   9999999977655432211     111111100 001                 1


Q ss_pred             cccCHHHHHHHHHhcCCceeEE
Q 022515          261 TERDEKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       261 ~~rt~~e~~~ll~~aGf~~~~~  282 (296)
                      ...|+++..++|++|||+.+.+
T Consensus       207 ~~~~~~~~~~~L~~aGF~~v~~  228 (247)
T PRK15451        207 LTDSVETHKARLHKAGFEHSEL  228 (247)
T ss_pred             ccCCHHHHHHHHHHcCchhHHH
Confidence            1238899999999999987654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.77  E-value=1.1e-17  Score=142.07  Aligned_cols=169  Identities=18%  Similarity=0.266  Sum_probs=124.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-  188 (296)
                      ..++..+.  ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++     ..++++++.+|..+ +.+ 
T Consensus        35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  112 (231)
T TIGR02752        35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD  112 (231)
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence            34555555  5677899999999999999999886 6789999999 899887765     34689999999987 554 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhh-hhhhh-------------
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQL-FFDML-------------  253 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~~~~-------------  253 (296)
                       .||+|++..++|++++..  ++|+++.++|+|   ||++++.+...+...   .+..... .+...             
T Consensus       113 ~~fD~V~~~~~l~~~~~~~--~~l~~~~~~Lk~---gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~  184 (231)
T TIGR02752       113 NSFDYVTIGFGLRNVPDYM--QVLREMYRVVKP---GGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYK  184 (231)
T ss_pred             CCccEEEEecccccCCCHH--HHHHHHHHHcCc---CeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHH
Confidence             499999999999888764  789999999999   999998886543321   0100000 00000             


Q ss_pred             ---hhhhcCccccCHHHHHHHHHhcCCceeEEEEcC-CcceEEEEeC
Q 022515          254 ---MMVLLTGTERDEKEWTKLFTYAGFSDYKIIPIL-GLRSLIEVYP  296 (296)
Q Consensus       254 ---~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~  296 (296)
                         .+........+.+++.++|+++||+++++.... +..+++.++|
T Consensus       185 ~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       185 EYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence               000001123478999999999999999998886 6777888775

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02244 tocopherol O-methyltransferase

Probab=99.76  E-value=3.9e-17  Score=146.11  Aligned_cols=152  Identities=16%  Similarity=0.228  Sum_probs=112.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~v  198 (296)
                      .++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++      ..++++|+.+|+.+ +++  .||+|++..+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            567899999999999999999988 789999999 888887764      34689999999988 655  4999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC-chh-hhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD-KSI-ETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                      +||+++..  +++++++++|+|   ||+++|.+.......... ... .....++............+.++|.++++++|
T Consensus       196 ~~h~~d~~--~~l~e~~rvLkp---GG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG  270 (340)
T PLN02244        196 GEHMPDKR--KFVQELARVAAP---GGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG  270 (340)
T ss_pred             hhccCCHH--HHHHHHHHHcCC---CcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence            99998864  789999999999   999999987543321110 000 00011111110001112348999999999999


Q ss_pred             CceeEEEEcC
Q 022515          277 FSDYKIIPIL  286 (296)
Q Consensus       277 f~~~~~~~~~  286 (296)
                      |+++++..+.
T Consensus       271 f~~v~~~d~s  280 (340)
T PLN02244        271 LQDIKTEDWS  280 (340)
T ss_pred             CCeeEeeeCc
Confidence            9999887764

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.73  E-value=9.1e-17  Score=138.47  Aligned_cols=152  Identities=14%  Similarity=0.189  Sum_probs=110.1

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C-CCccceeE
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A-ISPADAVL  194 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~-~p~~D~v~  194 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++++|+.+++++|+ +.+++.|++  .+++++.+|+.+ + .+.||+|+
T Consensus        19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--~~~~~~~~d~~~~~~~~~fD~v~   94 (255)
T PRK14103         19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--RGVDARTGDVRDWKPKPDTDVVV   94 (255)
T ss_pred             HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--cCCcEEEcChhhCCCCCCceEEE
Confidence            45666666  56778999999999999999999999999999999 999999873  468899999876 2 23599999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhh------hhhhhh-hh-hhcCccccCHH
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ------LFFDML-MM-VLLTGTERDEK  266 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~------~~~~~~-~~-~~~~g~~rt~~  266 (296)
                      ++.++|++++..  +++++++++|+|   ||++++.....  .... ......      .+.... .. ...+....+.+
T Consensus        95 ~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~--~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  166 (255)
T PRK14103         95 SNAALQWVPEHA--DLLVRWVDELAP---GSWIAVQVPGN--FDAP-SHAAVRALARREPWAKLLRDIPFRVGAVVQTPA  166 (255)
T ss_pred             EehhhhhCCCHH--HHHHHHHHhCCC---CcEEEEEcCCC--cCCh-hHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence            999999998754  789999999999   99988864221  1110 000000      011100 00 00122345899


Q ss_pred             HHHHHHHhcCCceeE
Q 022515          267 EWTKLFTYAGFSDYK  281 (296)
Q Consensus       267 e~~~ll~~aGf~~~~  281 (296)
                      ++.++|+++||++..
T Consensus       167 ~~~~~l~~aGf~v~~  181 (255)
T PRK14103        167 GYAELLTDAGCKVDA  181 (255)
T ss_pred             HHHHHHHhCCCeEEE
Confidence            999999999998544

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.72  E-value=8e-17  Score=142.40  Aligned_cols=141  Identities=27%  Similarity=0.368  Sum_probs=112.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccceeEehhhhccC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADAVLLKWILHDW  202 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~  202 (296)
                      .+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++  ...+++++.+|+.+ +++  .||+|++..++|++
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence            3567999999999999999999988889999999 899988875  34679999999987 554  49999999999999


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEE
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  282 (296)
                      ++.+  .+|++++++|+|   ||++++.+...+....      .....+.++      ...+.+|+.++++++||+.+++
T Consensus       192 ~d~~--~~L~e~~rvLkP---GG~LvIi~~~~p~~~~------~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        192 PDPQ--RGIKEAYRVLKI---GGKACLIGPVHPTFWL------SRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             CCHH--HHHHHHHHhcCC---CcEEEEEEecCcchhH------HHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence            9875  689999999999   9999988765432100      001112111      1247899999999999999998


Q ss_pred             EEcC
Q 022515          283 IPIL  286 (296)
Q Consensus       283 ~~~~  286 (296)
                      ..+.
T Consensus       255 ~~i~  258 (340)
T PLN02490        255 KRIG  258 (340)
T ss_pred             EEcC
Confidence            8764

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.71  E-value=2.1e-16  Score=148.09  Aligned_cols=151  Identities=17%  Similarity=0.226  Sum_probs=118.0

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--cc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PA  190 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~  190 (296)
                      .+++.+.  .+++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.|++    ...+++|..+|+.+ ++|  .|
T Consensus       257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence            4555555  5667899999999999999998876 779999999 899888765    45689999999988 555  49


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++..+++|+++..  .+|++++++|+|   ||++++.+..........   .....     ....+...++.+++.+
T Consensus       334 D~I~s~~~l~h~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~-----~~~~g~~~~~~~~~~~  400 (475)
T PLN02336        334 DVIYSRDTILHIQDKP--ALFRSFFKWLKP---GGKVLISDYCRSPGTPSP---EFAEY-----IKQRGYDLHDVQAYGQ  400 (475)
T ss_pred             EEEEECCcccccCCHH--HHHHHHHHHcCC---CeEEEEEEeccCCCCCcH---HHHHH-----HHhcCCCCCCHHHHHH
Confidence            9999999999998865  789999999999   999999987765432211   11111     1122445679999999


Q ss_pred             HHHhcCCceeEEEEc
Q 022515          271 LFTYAGFSDYKIIPI  285 (296)
Q Consensus       271 ll~~aGf~~~~~~~~  285 (296)
                      +++++||+++.+...
T Consensus       401 ~l~~aGF~~i~~~d~  415 (475)
T PLN02336        401 MLKDAGFDDVIAEDR  415 (475)
T ss_pred             HHHHCCCeeeeeecc
Confidence            999999999877654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.71  E-value=3.8e-16  Score=133.05  Aligned_cols=168  Identities=20%  Similarity=0.255  Sum_probs=123.5

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-  188 (296)
                      .++..+.  ..+..+|||||||+|.++..+++.+| +.+++++|+ +.+++.+++      ...+++++.+|+.+ +.+ 
T Consensus        42 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         42 KTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence            3444444  34568999999999999999999987 789999999 888887765      24679999999987 433 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-----hcC---
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-----LLT---  259 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---  259 (296)
                       .||+|++.+++|++++..  .+|+++.++|+|   ||++++.+...+....   ......++...++.     ..+   
T Consensus       120 ~~~D~I~~~~~l~~~~~~~--~~l~~~~~~L~~---gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  191 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPDID--KALREMYRVLKP---GGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAE  191 (239)
T ss_pred             CCccEEEEecccccCCCHH--HHHHHHHHhccC---CcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcH
Confidence             499999999999988754  789999999999   9999999876543321   10110111000000     000   


Q ss_pred             ---------ccccCHHHHHHHHHhcCCceeEEEEc-CCcceEEEEeC
Q 022515          260 ---------GTERDEKEWTKLFTYAGFSDYKIIPI-LGLRSLIEVYP  296 (296)
Q Consensus       260 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~  296 (296)
                               ...++.++|.++++++||+.+++... .+...++.+++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  238 (239)
T PRK00216        192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK  238 (239)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence                     12347899999999999999999986 46778888875

>TIGR00452 methyltransferase, putative

Probab=99.71  E-value=3e-16  Score=137.67  Aligned_cols=151  Identities=12%  Similarity=0.094  Sum_probs=108.7

Q ss_pred             HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-Ccc
Q 022515          120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-SPA  190 (296)
Q Consensus       120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-p~~  190 (296)
                      ++..+.  ..++.+|||||||+|.++..++...+. .++++|. +.++..++.      ...++.+..+++.+ +. ..|
T Consensus       113 ~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F  189 (314)
T TIGR00452       113 VLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF  189 (314)
T ss_pred             HHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence            444443  345689999999999999999888654 7999999 777654321      35688888888776 33 369


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC--chhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD--KSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      |+|++..+|||+++..  .+|++++++|+|   ||.+++.+...+......  |........+.       -...+.+++
T Consensus       190 D~V~s~gvL~H~~dp~--~~L~el~r~Lkp---GG~Lvletl~i~g~~~~~l~p~~ry~k~~nv-------~flpS~~~L  257 (314)
T TIGR00452       190 DTVFSMGVLYHRKSPL--EHLKQLKHQLVI---KGELVLETLVIDGDLNTVLVPKDRYAKMKNV-------YFIPSVSAL  257 (314)
T ss_pred             CEEEEcchhhccCCHH--HHHHHHHHhcCC---CCEEEEEEEEecCccccccCchHHHHhcccc-------ccCCCHHHH
Confidence            9999999999998764  789999999999   999998877655432210  00011000010       123488999


Q ss_pred             HHHHHhcCCceeEEEEc
Q 022515          269 TKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~~  285 (296)
                      ..+++++||+.+++...
T Consensus       258 ~~~L~~aGF~~V~i~~~  274 (314)
T TIGR00452       258 KNWLEKVGFENFRILDV  274 (314)
T ss_pred             HHHHHHCCCeEEEEEec
Confidence            99999999999988765

Known examples to date are restricted to the proteobacteria.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.70  E-value=8.1e-17  Score=120.96  Aligned_cols=99  Identities=23%  Similarity=0.415  Sum_probs=84.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccC-CC-CC-CccceeEehh-h
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDM-FE-AI-SPADAVLLKW-I  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~-~~-~~-p~~D~v~~~~-v  198 (296)
                      ++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++      ..+||+++.+|+ .. +. ++||+|++.. .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            357999999999999999999999999999999 999988876      579999999999 33 33 3699999999 6


Q ss_pred             hccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          199 LHDWND-EECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       199 lh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +|++.. ++..++|+++++.|+|   ||+++|.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKP---GGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCC---CcEEEEEE
Confidence            665543 5677999999999999   88888765

...

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.70  E-value=5.1e-16  Score=130.88  Aligned_cols=168  Identities=15%  Similarity=0.197  Sum_probs=122.6

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA  190 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~  190 (296)
                      .++..+.  ..++.+|||+|||+|..+..+++.+|. .+++++|+ +.+++.+++   ...++++..+|+.+ +.+  .|
T Consensus        30 ~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  107 (223)
T TIGR01934        30 RAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSF  107 (223)
T ss_pred             HHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcE
Confidence            3344443  346789999999999999999999987 79999999 888887765   34689999999987 443  49


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC-----------
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT-----------  259 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  259 (296)
                      |+|+++.++|+.++..  .+++++++.|+|   ||++++.+...+....   +......+...++...+           
T Consensus       108 D~i~~~~~~~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (223)
T TIGR01934       108 DAVTIAFGLRNVTDIQ--KALREMYRVLKP---GGRLVILEFSKPANAL---LKKFYKFYLKNVLPSIGGLISKNAEAYT  179 (223)
T ss_pred             EEEEEeeeeCCcccHH--HHHHHHHHHcCC---CcEEEEEEecCCCchh---hHHHHHHHHHHhhhhhhhhhcCCchhhH
Confidence            9999999999887754  789999999999   9999998876543211   10100111111110000           


Q ss_pred             ------ccccCHHHHHHHHHhcCCceeEEEEcCC-cceEEEEeC
Q 022515          260 ------GTERDEKEWTKLFTYAGFSDYKIIPILG-LRSLIEVYP  296 (296)
Q Consensus       260 ------g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~  296 (296)
                            ....+.++|.++|+++||+.+.+.+..+ ...++++++
T Consensus       180 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       180 YLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence                  1223789999999999999999998864 467887765

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.70  E-value=2.6e-16  Score=132.98  Aligned_cols=137  Identities=15%  Similarity=0.219  Sum_probs=109.0

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhccC
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILHDW  202 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~  202 (296)
                      .+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++      ..++++++.+|+.+ +.+ .||+|++..++|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            3799999999999999999999999999999 888887765      46789999999976 444 49999999999999


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEE
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  282 (296)
                      ++.  ..+|++++++|+|   ||++++.+...+.....   ..  ..        ......+.++|.++++++||++++.
T Consensus        81 ~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~---~~--~~--------~~~~~~s~~~~~~~l~~~Gf~~~~~  142 (224)
T smart00828       81 KDK--MDLFSNISRHLKD---GGHLVLADFIANLLSAI---EH--EE--------TTSYLVTREEWAELLARNNLRVVEG  142 (224)
T ss_pred             CCH--HHHHHHHHHHcCC---CCEEEEEEcccccCccc---cc--cc--------cccccCCHHHHHHHHHHCCCeEEEe
Confidence            875  4899999999999   99999998754321110   00  00        0111348899999999999999988


Q ss_pred             EEcC
Q 022515          283 IPIL  286 (296)
Q Consensus       283 ~~~~  286 (296)
                      ..+.
T Consensus       143 ~~~~  146 (224)
T smart00828      143 VDAS  146 (224)
T ss_pred             EECc
Confidence            7653

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.70  E-value=4.1e-16  Score=138.22  Aligned_cols=145  Identities=14%  Similarity=0.149  Sum_probs=106.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILH  200 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh  200 (296)
                      .+.+|||||||+|.++..+++..+. +++++|. +.++..++.      ...+++++.+|+.+ +.+ .||+|++..++|
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~  200 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY  200 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence            4579999999999999999998765 5999998 666654321      24589999999887 544 499999999999


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                      |..+..  .+|++++++|+|   ||.+++.+...+...... ......+..  |.  ..-..+|.+++.++|+++||+++
T Consensus       201 H~~dp~--~~L~~l~~~Lkp---GG~lvl~~~~i~~~~~~~-l~p~~~y~~--~~--~~~~lps~~~l~~~L~~aGF~~i  270 (322)
T PRK15068        201 HRRSPL--DHLKQLKDQLVP---GGELVLETLVIDGDENTV-LVPGDRYAK--MR--NVYFIPSVPALKNWLERAGFKDV  270 (322)
T ss_pred             ccCCHH--HHHHHHHHhcCC---CcEEEEEEEEecCCCccc-cCchhHHhc--Cc--cceeCCCHHHHHHHHHHcCCceE
Confidence            988764  789999999999   999987666555433211 000001100  00  00123589999999999999999


Q ss_pred             EEEEc
Q 022515          281 KIIPI  285 (296)
Q Consensus       281 ~~~~~  285 (296)
                      ++...
T Consensus       271 ~~~~~  275 (322)
T PRK15068        271 RIVDV  275 (322)
T ss_pred             EEEeC
Confidence            88765

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.68  E-value=1e-15  Score=126.63  Aligned_cols=142  Identities=17%  Similarity=0.216  Sum_probs=108.2

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-  188 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-  188 (296)
                      .+.+++.++  ..+..+|||+|||+|..+..|+++  +.+++++|+ +.+++.+++     ...++++...|+.+ +++ 
T Consensus        19 ~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (197)
T PRK11207         19 HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG   94 (197)
T ss_pred             hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence            345566665  455689999999999999999986  579999999 889888765     23458899999877 444 


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      .||+|++..++|++++++...++++++++|+|   ||++++++....+....+   .     .       .....+.+|+
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~~~~~~~~~~~~---~-----~-------~~~~~~~~el  156 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---V-----G-------FPFAFKEGEL  156 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCCCCCCC---C-----C-------CCCccCHHHH
Confidence            59999999999998888888999999999999   999877765544321110   0     0       0112378899


Q ss_pred             HHHHHhcCCceeEE
Q 022515          269 TKLFTYAGFSDYKI  282 (296)
Q Consensus       269 ~~ll~~aGf~~~~~  282 (296)
                      .++++  ||+++..
T Consensus       157 ~~~~~--~~~~~~~  168 (197)
T PRK11207        157 RRYYE--GWEMVKY  168 (197)
T ss_pred             HHHhC--CCeEEEe
Confidence            88887  8987765

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.68  E-value=1.2e-15  Score=132.71  Aligned_cols=146  Identities=18%  Similarity=0.338  Sum_probs=112.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~  197 (296)
                      +.++.+|||||||+|..+..+++.. +..+++++|+ +.+++.|++     ..++++++.+|+.+ +++  .||+|++..
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            5677899999999999888777764 5678999999 999998876     34689999999987 554  499999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF  277 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf  277 (296)
                      ++|++++..  +++++++++|+|   ||++++.+.........    .  ...+..++....+...+.++|.++++++||
T Consensus       155 v~~~~~d~~--~~l~~~~r~Lkp---GG~l~i~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf  223 (272)
T PRK11873        155 VINLSPDKE--RVFKEAFRVLKP---GGRFAISDVVLRGELPE----E--IRNDAELYAGCVAGALQEEEYLAMLAEAGF  223 (272)
T ss_pred             cccCCCCHH--HHHHHHHHHcCC---CcEEEEEEeeccCCCCH----H--HHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence            999888754  789999999999   99999998775432111    1  111222222223456689999999999999


Q ss_pred             ceeEEEE
Q 022515          278 SDYKIIP  284 (296)
Q Consensus       278 ~~~~~~~  284 (296)
                      ..+++..
T Consensus       224 ~~v~i~~  230 (272)
T PRK11873        224 VDITIQP  230 (272)
T ss_pred             CceEEEe
Confidence            9887754

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.67  E-value=1.1e-15  Score=126.00  Aligned_cols=145  Identities=19%  Similarity=0.282  Sum_probs=110.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCC------CeEEeccc-hhHhhccCC--------CCCCeeEEeccCCC-CCCc--c
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPK------LECTCFDL-PHVVNGLDS--------DLANLKYVGGDMFE-AISP--A  190 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~-~~p~--~  190 (296)
                      ..+.++|||+||||..+..+++.-+.      .+++++|+ |+|+..+++        ...++.++++|..+ |+|.  +
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            45689999999999999999998776      79999999 999988765        34569999999999 8884  9


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh--hhhhhh---------------h
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET--QLFFDM---------------L  253 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~--~~~~~~---------------~  253 (296)
                      |.|++.+-+.+|++.+  +.|++++|+|||   ||++.+.|.---+...   ...+  ..+++.               .
T Consensus       179 D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~~sYq  250 (296)
T KOG1540|consen  179 DAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDRKSYQ  250 (296)
T ss_pred             eeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhHhhhh
Confidence            9999999999999976  889999999999   9999999864433111   1010  011111               1


Q ss_pred             hhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515          254 MMVLLTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       254 ~~~~~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                      +++..=-+..+.+++..+.++|||+.+.
T Consensus       251 YLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  251 YLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence            1111101233889999999999999886

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.66  E-value=5.1e-16  Score=134.09  Aligned_cols=161  Identities=11%  Similarity=0.099  Sum_probs=113.2

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISP  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~  189 (296)
                      ...+++.+.  ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++      ..+++++...|+.+-.+.
T Consensus        51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~  127 (273)
T PF02353_consen   51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK  127 (273)
T ss_dssp             HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred             HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence            356677776  8899999999999999999999999 899999999 888877654      578999999999873337


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh-hhhhhhhhhhhcCccccCHHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET-QLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      ||.|++..++.|...+....+++++.+.|+|   ||++++............ .... ..++.  .....||...+.+++
T Consensus       128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq~i~~~~~~~~~-~~~~~~~~i~--kyiFPgg~lps~~~~  201 (273)
T PF02353_consen  128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQTITHRDPPYHA-ERRSSSDFIR--KYIFPGGYLPSLSEI  201 (273)
T ss_dssp             -SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEEEEEE--HHHHH-CTTCCCHHHH--HHTSTTS---BHHHH
T ss_pred             CCEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEEecccccccchh-hcCCCceEEE--EeeCCCCCCCCHHHH
Confidence            9999999999999988888999999999999   999988777665432110 0000 01222  222357788899999


Q ss_pred             HHHHHhcCCceeEEEEcC
Q 022515          269 TKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~~~  286 (296)
                      ...++++||++..+...+
T Consensus       202 ~~~~~~~~l~v~~~~~~~  219 (273)
T PF02353_consen  202 LRAAEDAGLEVEDVENLG  219 (273)
T ss_dssp             HHHHHHTT-EEEEEEE-H
T ss_pred             HHHHhcCCEEEEEEEEcC
Confidence            999999999998887653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.66  E-value=6.3e-16  Score=136.25  Aligned_cols=145  Identities=14%  Similarity=0.111  Sum_probs=105.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl  199 (296)
                      .+.+|||||||+|.++..+++.  +.+++++|. +++++.|++      ...+++++.+|+.+ +.+  .||+|++..++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            4569999999999999988763  789999999 999998875      23589999999876 433  49999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhh-hhhhhhcC----ccccCHHHHHHHHHh
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFD-MLMMVLLT----GTERDEKEWTKLFTY  274 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----g~~rt~~e~~~ll~~  274 (296)
                      ||+++..  .+|++++++|+|   ||.+++.+.......    +........ +..+...+    .+..+++|+.+++++
T Consensus       209 eHv~d~~--~~L~~l~r~LkP---GG~liist~nr~~~~----~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~  279 (322)
T PLN02396        209 EHVANPA--EFCKSLSALTIP---NGATVLSTINRTMRA----YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQR  279 (322)
T ss_pred             HhcCCHH--HHHHHHHHHcCC---CcEEEEEECCcCHHH----HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHH
Confidence            9999875  789999999999   898888864321100    000000000 00001111    235699999999999


Q ss_pred             cCCceeEEEEc
Q 022515          275 AGFSDYKIIPI  285 (296)
Q Consensus       275 aGf~~~~~~~~  285 (296)
                      +||+++++..+
T Consensus       280 aGf~i~~~~G~  290 (322)
T PLN02396        280 ASVDVKEMAGF  290 (322)
T ss_pred             cCCeEEEEeee
Confidence            99999887543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=1.8e-15  Score=129.09  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=129.8

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISP  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~  189 (296)
                      ...+++.+.  ++++.+|||||||-|.+++..+++| +.+++++++ +++.+.+++      ..+++++...|+.+..+.
T Consensus        61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~  137 (283)
T COG2230          61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP  137 (283)
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence            456677777  8999999999999999999999999 999999999 888887765      467999999999885445


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT  269 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~  269 (296)
                      ||-|++..+++|+..+.-..+++++++.|+|   ||++++.....+.....    ....+..-  ....||...+.+++.
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh~I~~~~~~~~----~~~~~i~~--yiFPgG~lPs~~~i~  208 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLHSITGPDQEFR----RFPDFIDK--YIFPGGELPSISEIL  208 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEEEecCCCcccc----cchHHHHH--hCCCCCcCCCHHHHH
Confidence            9999999999999998888999999999999   99999998877664331    11112221  123588888999999


Q ss_pred             HHHHhcCCceeEEEEcC
Q 022515          270 KLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       270 ~ll~~aGf~~~~~~~~~  286 (296)
                      +..+++||.+..+...+
T Consensus       209 ~~~~~~~~~v~~~~~~~  225 (283)
T COG2230         209 ELASEAGFVVLDVESLR  225 (283)
T ss_pred             HHHHhcCcEEehHhhhc
Confidence            99999999988766543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.65  E-value=2.6e-16  Score=124.97  Aligned_cols=136  Identities=21%  Similarity=0.422  Sum_probs=101.5

Q ss_pred             CCCEEEEecCCchHHHHHHH-HHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIA-KAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~~~v  198 (296)
                      +..+|||+|||+|.++..++ +.+|+.+++++|+ +.+++.|++     ..++++|..+|+.+ +  ++ .||+|++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            56799999999999999999 5688999999999 999999876     35589999999999 5  43 6999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh--hhhhh-cCccccCHHHHHHHHHhc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM--LMMVL-LTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~g~~rt~~e~~~ll~~a  275 (296)
                      +|++++..  .+|+++.+.|++   ||.+++.+.........    .......+  ..... ..+.  +.++|..+|++|
T Consensus        83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a  151 (152)
T PF13847_consen   83 LHHFPDPE--KVLKNIIRLLKP---GGILIISDPNHNDELPE----QLEELMNLYSEVWSMIYIGN--DKEEWKYILEEA  151 (152)
T ss_dssp             GGGTSHHH--HHHHHHHHHEEE---EEEEEEEEEEHSHHHHH----HHHHHHHHHHHHHHHCC-----CCCGHHHHHHHT
T ss_pred             hhhccCHH--HHHHHHHHHcCC---CcEEEEEECChHHHHHH----HHHHHHHHHHHHhhhhhccc--CHHHHHHHHHhc
Confidence            99999875  789999999999   89998888773221000    00011111  11101 1122  778999999999


Q ss_pred             C
Q 022515          276 G  276 (296)
Q Consensus       276 G  276 (296)
                      |
T Consensus       152 g  152 (152)
T PF13847_consen  152 G  152 (152)
T ss_dssp             T
T ss_pred             C
Confidence            8

...

>PRK08317 hypothetical protein; Provisional

Probab=99.65  E-value=5.3e-15  Score=125.90  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=113.1

Q ss_pred             HHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--cc
Q 022515          120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PA  190 (296)
Q Consensus       120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~  190 (296)
                      +++.+.  ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++    ...++++..+|+.. +++  .|
T Consensus        11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317         11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            444444  6677899999999999999999988 7889999999 888877764    35679999999877 543  49


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCch-hhhhhhhhhhhhhhcCccccCHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS-IETQLFFDMLMMVLLTGTERDEKEWT  269 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~rt~~e~~  269 (296)
                      |+|++.+++|++++..  .+++++.++|+|   ||++++.+.........+.. .........+  ........+..+|.
T Consensus        89 D~v~~~~~~~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  161 (241)
T PRK08317         89 DAVRSDRVLQHLEDPA--RALAEIARVLRP---GGRVVVLDTDWDTLVWHSGDRALMRKILNFW--SDHFADPWLGRRLP  161 (241)
T ss_pred             eEEEEechhhccCCHH--HHHHHHHHHhcC---CcEEEEEecCCCceeecCCChHHHHHHHHHH--HhcCCCCcHHHHHH
Confidence            9999999999998864  789999999999   99999988543211111000 0111111111  11122344667899


Q ss_pred             HHHHhcCCceeEEEEc
Q 022515          270 KLFTYAGFSDYKIIPI  285 (296)
Q Consensus       270 ~ll~~aGf~~~~~~~~  285 (296)
                      ++++++||+++++...
T Consensus       162 ~~l~~aGf~~~~~~~~  177 (241)
T PRK08317        162 GLFREAGLTDIEVEPY  177 (241)
T ss_pred             HHHHHcCCCceeEEEE
Confidence            9999999998766543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.65  E-value=1.5e-15  Score=130.83  Aligned_cols=149  Identities=16%  Similarity=0.150  Sum_probs=106.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--CCC--ccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--AIS--PADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~~p--~~D~v~~~~  197 (296)
                      .++.+|||||||+|.++..+++.  +.+++++|+ +++++.|++      ..++++++.+|+.+  +.+  .||+|++..
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~  120 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA  120 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence            35679999999999999999987  578999999 999998875      24689999999876  232  499999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh---hh-----hhhcCccccCHHHHH
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM---LM-----MVLLTGTERDEKEWT  269 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~g~~rt~~e~~  269 (296)
                      ++|+++++.  .+|+++.++|+|   ||++++...........   ......+..   .+     .........+++++.
T Consensus       121 vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~n~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~  192 (255)
T PRK11036        121 VLEWVADPK--SVLQTLWSVLRP---GGALSLMFYNANGLLMH---NMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVY  192 (255)
T ss_pred             HHHhhCCHH--HHHHHHHHHcCC---CeEEEEEEECccHHHHH---HHHccChHHHHhcCccccccCCCCCCCCCHHHHH
Confidence            999998765  789999999999   99998875432210000   000000000   00     000112235789999


Q ss_pred             HHHHhcCCceeEEEEcCC
Q 022515          270 KLFTYAGFSDYKIIPILG  287 (296)
Q Consensus       270 ~ll~~aGf~~~~~~~~~~  287 (296)
                      ++++++||+++.+.-+..
T Consensus       193 ~~l~~aGf~~~~~~gi~~  210 (255)
T PRK11036        193 QWLEEAGWQIMGKTGVRV  210 (255)
T ss_pred             HHHHHCCCeEeeeeeEEE
Confidence            999999999987665543

>PRK06922 hypothetical protein; Provisional

Probab=99.64  E-value=1.4e-15  Score=142.43  Aligned_cols=143  Identities=20%  Similarity=0.289  Sum_probs=109.0

Q ss_pred             CchhhcccCchHHHHHHHHHHccchh--chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh
Q 022515           90 TLWEYAGDEPKLNNFFNEAMASDAWL--ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV  166 (296)
Q Consensus        90 ~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~  166 (296)
                      .+|+++...++...+|...|......  ........++  +.++.+|||||||+|.++..+++.+|+.+++++|+ +.++
T Consensus       378 ~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML  455 (677)
T PRK06922        378 LLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI  455 (677)
T ss_pred             HHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            56777777777777776655432221  1122222334  44678999999999999999999999999999999 8899


Q ss_pred             hccCC----CCCCeeEEeccCCC-C--CC--ccceeEehhhhccC-----------CchHHHHHHHHHHHhcccCCCCcE
Q 022515          167 NGLDS----DLANLKYVGGDMFE-A--IS--PADAVLLKWILHDW-----------NDEECVKILKKCKEAITSDGKKGK  226 (296)
Q Consensus       167 ~~a~~----~~~ri~~~~~D~~~-~--~p--~~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~aL~p~~~gG~  226 (296)
                      +.|++    ...+++++.+|..+ +  ++  .||+|+++.++|+|           ++++..++|++++++|||   ||+
T Consensus       456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GGr  532 (677)
T PRK06922        456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GGR  532 (677)
T ss_pred             HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---CcE
Confidence            88865    23578889999876 3  33  49999999999986           245678999999999999   999


Q ss_pred             EEEEeeeeCCC
Q 022515          227 VIIIDMIRENK  237 (296)
Q Consensus       227 lli~e~~~~~~  237 (296)
                      +++.|...++.
T Consensus       533 LII~D~v~~E~  543 (677)
T PRK06922        533 IIIRDGIMTED  543 (677)
T ss_pred             EEEEeCccCCc
Confidence            99999766543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.63  E-value=1.8e-15  Score=120.84  Aligned_cols=135  Identities=21%  Similarity=0.264  Sum_probs=96.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---CCCccceeEehhhhccCC
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---AISPADAVLLKWILHDWN  203 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~~p~~D~v~~~~vlh~~~  203 (296)
                      ..+..+|||||||+|.++..+.+..  .+++++|+ +.+++.     ..+.....+...   +...||+|++..+|||++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~   92 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP   92 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence            4567899999999999999996653  39999999 888876     122333222223   223599999999999999


Q ss_pred             chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh--cCccccCHHHHHHHHHhcCCceeE
Q 022515          204 DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL--LTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                      +.  ..+|+++++.|+|   ||.+++.+......       ....+....+...  .....++.++|+++++++||++++
T Consensus        93 d~--~~~l~~l~~~Lkp---gG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   93 DP--EEFLKELSRLLKP---GGYLVISDPNRDDP-------SPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             HH--HHHHHHHHHCEEE---EEEEEEEEEBTTSH-------HHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             cH--HHHHHHHHHhcCC---CCEEEEEEcCCcch-------hhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence            74  4899999999999   89988888765321       0011111111111  234567999999999999999875

...

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.61  E-value=1.1e-14  Score=125.82  Aligned_cols=107  Identities=17%  Similarity=0.298  Sum_probs=91.6

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CC-Ccccee
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AI-SPADAV  193 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~-p~~D~v  193 (296)
                      ...++..++  ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...+++++.+|+.+ .. ..||+|
T Consensus        20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v   97 (258)
T PRK01683         20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI   97 (258)
T ss_pred             HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence            445666666  66788999999999999999999999999999999 99999988655679999999876 22 369999


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +++.++|+.++..  .+|++++++|+|   ||++++.
T Consensus        98 ~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~~~~~  129 (258)
T PRK01683         98 FANASLQWLPDHL--ELFPRLVSLLAP---GGVLAVQ  129 (258)
T ss_pred             EEccChhhCCCHH--HHHHHHHHhcCC---CcEEEEE
Confidence            9999999888754  789999999999   8988775

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.61  E-value=8.8e-15  Score=123.25  Aligned_cols=184  Identities=10%  Similarity=0.041  Sum_probs=120.1

Q ss_pred             CchhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc
Q 022515           90 TLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG  168 (296)
Q Consensus        90 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~  168 (296)
                      ..|+.+...+.....+...|......+...++..+.....+..+|||||||+|.++..+++.  +.+++++|+ +.++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~   92 (219)
T TIGR02021        15 QRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQM   92 (219)
T ss_pred             HHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHH
Confidence            34555555444444444444333333334444444311235689999999999999999886  558999999 999988


Q ss_pred             cCC------CCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc
Q 022515          169 LDS------DLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK  242 (296)
Q Consensus       169 a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~  242 (296)
                      |++      ..+++++..+|+.+....||+|++..++++++.++...+++++.+.+++    |.++.+.   +.. .  .
T Consensus        93 a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~----~~~i~~~---~~~-~--~  162 (219)
T TIGR02021        93 ARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE----RVIFTFA---PKT-A--W  162 (219)
T ss_pred             HHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC----CEEEEEC---CCc-h--H
Confidence            875      2358999999988733569999999999999887778899999998876    4333321   111 0  0


Q ss_pred             hhhhhhhhhhhhhhh---cCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515          243 SIETQLFFDMLMMVL---LTGTERDEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       243 ~~~~~~~~~~~~~~~---~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      . .....+...+...   ..-..++.+++.++++++||+++......
T Consensus       163 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~  208 (219)
T TIGR02021       163 L-AFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS  208 (219)
T ss_pred             H-HHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence            0 0000111100000   01123489999999999999999887653

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.61  E-value=1.3e-14  Score=119.98  Aligned_cols=142  Identities=13%  Similarity=0.137  Sum_probs=104.9

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~  190 (296)
                      ..+++.+.  ..++.+|||+|||+|.++..++++  +.+++++|+ +.+++.+++    ..-++++...|+.. +.+ .|
T Consensus        20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   95 (195)
T TIGR00477        20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY   95 (195)
T ss_pred             HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence            45555555  445679999999999999999986  679999999 889987764    12247777788765 433 59


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++..++|+++.++...++++++++|+|   ||++++++....+.....+        .       .....+++|+.+
T Consensus        96 D~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~~~~~~~~~~~~~--------~-------~~~~~~~~el~~  157 (195)
T TIGR00477        96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIVAAMDTADYPCHM--------P-------FSFTFKEDELRQ  157 (195)
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEEEecccCCCCCCC--------C-------cCccCCHHHHHH
Confidence            999999999999888888999999999999   9998887765433211100        0       011238899999


Q ss_pred             HHHhcCCceeEEE
Q 022515          271 LFTYAGFSDYKII  283 (296)
Q Consensus       271 ll~~aGf~~~~~~  283 (296)
                      +++  +|+++...
T Consensus       158 ~f~--~~~~~~~~  168 (195)
T TIGR00477       158 YYA--DWELLKYN  168 (195)
T ss_pred             HhC--CCeEEEee
Confidence            886  48777665

Part of a tellurite-reducing operon tehA and tehB

>PRK06202 hypothetical protein; Provisional

Probab=99.59  E-value=3.6e-14  Score=120.59  Aligned_cols=146  Identities=22%  Similarity=0.201  Sum_probs=101.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHH----CCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CC-C-ccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKA----FPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AI-S-PADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~-p-~~D~v~~~~v  198 (296)
                      .+..+|||||||+|.++..|++.    .|+.+++++|+ +.+++.|++  ...++++...+... +. + .||+|+++.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            46679999999999999888764    45679999999 999998876  33456666655433 22 2 5999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhh----hhcC-----ccccCHHHHH
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM----VLLT-----GTERDEKEWT  269 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----g~~rt~~e~~  269 (296)
                      +||+++++..++|++++++++     |.+++.+...+...    + ...........    ....     -+.++.+|+.
T Consensus       139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~----~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~  208 (232)
T PRK06202        139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLA----Y-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA  208 (232)
T ss_pred             eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHH----H-HHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence            999999887899999999986     56666665443210    0 00000000000    0011     1345899999


Q ss_pred             HHHHhcCCceeEEEEc
Q 022515          270 KLFTYAGFSDYKIIPI  285 (296)
Q Consensus       270 ~ll~~aGf~~~~~~~~  285 (296)
                      +++++ ||++....+.
T Consensus       209 ~ll~~-Gf~~~~~~~~  223 (232)
T PRK06202        209 ALAPQ-GWRVERQWPF  223 (232)
T ss_pred             HHhhC-CCeEEeccce
Confidence            99999 9998776654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.59  E-value=5.7e-15  Score=107.07  Aligned_cols=89  Identities=22%  Similarity=0.369  Sum_probs=76.9

Q ss_pred             EEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHH
Q 022515          135 VDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECV  208 (296)
Q Consensus       135 LDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~  208 (296)
                      ||+|||+|..+..++++ +..+++++|+ +++++.+++  ...++++..+|+.+ +++  .||+|++.+++|++++  ..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HH
Confidence            89999999999999998 8899999999 899998887  56677899999998 766  3999999999999944  45


Q ss_pred             HHHHHHHHhcccCCCCcEEEE
Q 022515          209 KILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       209 ~iL~~~~~aL~p~~~gG~lli  229 (296)
                      +++++++|+|||   ||+++|
T Consensus        78 ~~l~e~~rvLk~---gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKP---GGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEE---EEEEEE
T ss_pred             HHHHHHHHHcCc---CeEEeC
Confidence            899999999999   888875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.57  E-value=1.5e-14  Score=116.66  Aligned_cols=166  Identities=14%  Similarity=0.210  Sum_probs=122.1

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC--CCCccceeE
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE--AISPADAVL  194 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~--~~p~~D~v~  194 (296)
                      ..++...+  .....+|+|+|||+|..+..|++++|...++++|. ++|++.|++...+++|..+|+.+  +-+..|+++
T Consensus        20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf   97 (257)
T COG4106          20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF   97 (257)
T ss_pred             HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence            45677777  77889999999999999999999999999999999 99999997778889999999988  334699999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh----hhhc------CccccC
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM----MVLL------TGTERD  264 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~g~~rt  264 (296)
                      .+-+||..+|-  .++|.++...|.|   ||.|.+-=.   +.-..+   .+..+.+.--    -...      .....+
T Consensus        98 aNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQmP---dN~dep---sH~~mr~~A~~~p~~~~l~~~~~~r~~v~s  166 (257)
T COG4106          98 ANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQMP---DNLDEP---SHRLMRETADEAPFAQELGGRGLTRAPLPS  166 (257)
T ss_pred             hhhhhhhcccc--HHHHHHHHHhhCC---CceEEEECC---CccCch---hHHHHHHHHhcCchhhhhCccccccCCCCC
Confidence            99999988875  4889999999999   887766432   221111   1111211110    0011      223448


Q ss_pred             HHHHHHHHHhcCCceeEE-----EEcCCcceEEEEeC
Q 022515          265 EKEWTKLFTYAGFSDYKI-----IPILGLRSLIEVYP  296 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~-----~~~~~~~~vi~~~~  296 (296)
                      +..|-++|...+-++--.     +++++...|++++|
T Consensus       167 ~a~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk  203 (257)
T COG4106         167 PAAYYELLAPLACRVDIWHTTYYHQLPGADAIVDWVK  203 (257)
T ss_pred             HHHHHHHhCcccceeeeeeeeccccCCCccchhhhee
Confidence            899999999887654332     23456677877764

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.57  E-value=5.4e-14  Score=119.73  Aligned_cols=137  Identities=17%  Similarity=0.207  Sum_probs=104.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      ...+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++++++.+|+.+ +.+  .||+|++.+++|+.++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            347899999999999999999999999999999 888887765 44689999999987 543  4999999999998877


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII  283 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  283 (296)
                      ..  .+|++++++|+|   ||.+++.+......      ..   +....  ...+....+.++|.++++++ |+...+.
T Consensus       114 ~~--~~l~~~~~~L~~---~G~l~~~~~~~~~~------~~---~~~~~--~~~~~~~~~~~~~~~~l~~~-f~~~~~~  175 (240)
T TIGR02072       114 LS--QALSELARVLKP---GGLLAFSTFGPGTL------HE---LRQSF--GQHGLRYLSLDELKALLKNS-FELLTLE  175 (240)
T ss_pred             HH--HHHHHHHHHcCC---CcEEEEEeCCccCH------HH---HHHHH--HHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence            54  789999999999   89988875432210      01   11110  00223455889999999998 8866543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK05785 hypothetical protein; Provisional

Probab=99.57  E-value=8.3e-14  Score=117.61  Aligned_cols=149  Identities=15%  Similarity=0.151  Sum_probs=104.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCch
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDE  205 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~  205 (296)
                      ++.+|||||||+|.++..+++.+ +.+++++|+ ++|++.|++.   ..++.+|+.+ +++  .||+|++..++|++++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~  126 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI  126 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence            46799999999999999999987 679999999 9999998732   3467888887 665  49999999999999886


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh------h-hhcCc-------------cccCH
Q 022515          206 ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM------M-VLLTG-------------TERDE  265 (296)
Q Consensus       206 ~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~g-------------~~rt~  265 (296)
                      +  +.|++++++|+|   .  +.++|...++...      ...++.+++      . ..+++             ...+.
T Consensus       127 ~--~~l~e~~RvLkp---~--~~ile~~~p~~~~------~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~  193 (226)
T PRK05785        127 E--KVIAEFTRVSRK---Q--VGFIAMGKPDNVI------KRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTN  193 (226)
T ss_pred             H--HHHHHHHHHhcC---c--eEEEEeCCCCcHH------HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCH
Confidence            5  789999999998   3  3345543332210      111111111      0 01122             12278


Q ss_pred             HHHHHHHHhcCCceeEEEEcC-CcceEEEEeC
Q 022515          266 KEWTKLFTYAGFSDYKIIPIL-GLRSLIEVYP  296 (296)
Q Consensus       266 ~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~  296 (296)
                      +++.++++++| +.++.+... |...+..++|
T Consensus       194 ~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        194 SFHREIFEKYA-DIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             HHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence            99999999984 667777764 5556666553

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.56  E-value=1.2e-13  Score=118.70  Aligned_cols=148  Identities=11%  Similarity=0.128  Sum_probs=104.9

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccc
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PAD  191 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D  191 (296)
                      .+..+++.++  ..+..+|||+|||+|.++..+.+.  +.+++++|+ +.+++.+++....+.++.+|+.+ +++  .||
T Consensus        30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD  105 (251)
T PRK10258         30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD  105 (251)
T ss_pred             HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence            3445555555  345689999999999999888764  579999999 99999887533446789999987 554  499


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhh-hhhhhhhhhhcCccccCHHHHHH
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ-LFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      +|+++.++|+.++.  ..+|+++.++|+|   ||.+++........      .... .+..+. .........+.+++.+
T Consensus       106 ~V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~~~~~~~~------~el~~~~~~~~-~~~~~~~~~~~~~l~~  173 (251)
T PRK10258        106 LAWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFTTLVQGSL------PELHQAWQAVD-ERPHANRFLPPDAIEQ  173 (251)
T ss_pred             EEEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEEeCCCCch------HHHHHHHHHhc-cCCccccCCCHHHHHH
Confidence            99999999877665  4789999999999   89888876532211      0111 111100 0011223458899999


Q ss_pred             HHHhcCCce
Q 022515          271 LFTYAGFSD  279 (296)
Q Consensus       271 ll~~aGf~~  279 (296)
                      ++...|++.
T Consensus       174 ~l~~~~~~~  182 (251)
T PRK10258        174 ALNGWRYQH  182 (251)
T ss_pred             HHHhCCcee
Confidence            999888764

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.56  E-value=1.2e-15  Score=112.12  Aligned_cols=88  Identities=22%  Similarity=0.387  Sum_probs=59.5

Q ss_pred             EEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCC---CeeEEeccCCCC-CC-ccceeEehhhhccCC
Q 022515          135 VDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLA---NLKYVGGDMFEA-IS-PADAVLLKWILHDWN  203 (296)
Q Consensus       135 LDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~---ri~~~~~D~~~~-~p-~~D~v~~~~vlh~~~  203 (296)
                      ||||||+|.++..+++.+|..+++++|+ +.+++.+++     ...   ++++...|..+. .+ .||+|++.+++|+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            7999999999999999999999999999 999988876     222   344455555542 33 699999999999995


Q ss_pred             chHHHHHHHHHHHhcccCCCCcEE
Q 022515          204 DEECVKILKKCKEAITSDGKKGKV  227 (296)
Q Consensus       204 d~~~~~iL~~~~~aL~p~~~gG~l  227 (296)
                      +  ...+|+++++.|+|   ||++
T Consensus        81 ~--~~~~l~~~~~~L~p---gG~l   99 (99)
T PF08242_consen   81 D--IEAVLRNIYRLLKP---GGIL   99 (99)
T ss_dssp             ---HHHHHHHHTTT-TS---S-EE
T ss_pred             h--HHHHHHHHHHHcCC---CCCC
Confidence            4  45899999999999   8875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.56  E-value=1.3e-13  Score=119.08  Aligned_cols=100  Identities=13%  Similarity=0.234  Sum_probs=83.6

Q ss_pred             CCCCEEEEecCCchH----HHHHHHHHCC-----CCeEEeccc-hhHhhccCC-C-------------------------
Q 022515          129 EGLNSLVDVGGGIGT----AAKAIAKAFP-----KLECTCFDL-PHVVNGLDS-D-------------------------  172 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~-~-------------------------  172 (296)
                      .+..+|+|+|||+|.    +++.+++.+|     +.++++.|+ +.+++.|++ .                         
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            345799999999996    5666666654     578999999 999998876 1                         


Q ss_pred             ------CCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          173 ------LANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       173 ------~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                            ..+|+|..+|+.+ +.+  .||+|++.++||++++++..+++++++++|+|   ||.+++..
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg~  242 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLGH  242 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEEC
Confidence                  1479999999998 333  49999999999999988888999999999999   99988865

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.56  E-value=1.3e-14  Score=120.44  Aligned_cols=141  Identities=18%  Similarity=0.225  Sum_probs=107.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCC----CeeEEeccCCCCCCccceeEehhh
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLA----NLKYVGGDMFEAISPADAVLLKWI  198 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~----ri~~~~~D~~~~~p~~D~v~~~~v  198 (296)
                      +++|||||||+|-++..|++.  +.+++++|+ +.+++.|++       ...    |+++.+.|.....+.||+|+++.+
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            478999999999999999998  689999999 999998876       233    588888888776666999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhhhc-C----ccccCHHHHHHHH
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMVLL-T----GTERDEKEWTKLF  272 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~----g~~rt~~e~~~ll  272 (296)
                      +||..|++  .+++.+.+.|+|   +|+++|......-....     ...+++-+ ..... |    .+.-++++...++
T Consensus       168 leHV~dp~--~~l~~l~~~lkP---~G~lfittinrt~lS~~-----~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l  237 (282)
T KOG1270|consen  168 LEHVKDPQ--EFLNCLSALLKP---NGRLFITTINRTILSFA-----GTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL  237 (282)
T ss_pred             HHHHhCHH--HHHHHHHHHhCC---CCceEeeehhhhHHHhh-----ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence            99998876  899999999999   99999988644322111     01111111 11122 2    2445899999999


Q ss_pred             HhcCCceeEEE
Q 022515          273 TYAGFSDYKII  283 (296)
Q Consensus       273 ~~aGf~~~~~~  283 (296)
                      ..+|+++..+.
T Consensus       238 ~~~~~~v~~v~  248 (282)
T KOG1270|consen  238 NANGAQVNDVV  248 (282)
T ss_pred             HhcCcchhhhh
Confidence            99999876654

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.55  E-value=1.2e-13  Score=112.43  Aligned_cols=162  Identities=16%  Similarity=0.127  Sum_probs=121.8

Q ss_pred             CCCC-EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCC-eeEEeccCCCC---CC--------c
Q 022515          129 EGLN-SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLAN-LKYVGGDMFEA---IS--------P  189 (296)
Q Consensus       129 ~~~~-~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~r-i~~~~~D~~~~---~p--------~  189 (296)
                      .... +||+||+|||..+.++++.+|+++..--|. +......+.     ...+ ..-+..|..++   .+        .
T Consensus        23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~  102 (204)
T PF06080_consen   23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES  102 (204)
T ss_pred             CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence            3444 599999999999999999999999888887 444322111     1122 12234455542   11        4


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cCccccCHHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LTGTERDEKEW  268 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~rt~~e~  268 (296)
                      ||+|++.+++|..+.+.+..+++.+.++|+|   ||.+++.-.+..+..-.+   .....+|-..... .....|+.+++
T Consensus       103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v  176 (204)
T PF06080_consen  103 FDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDV  176 (204)
T ss_pred             cceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHH
Confidence            8999999999999999999999999999999   999999998776654322   3335566655544 24567899999


Q ss_pred             HHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          269 TKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      .++.+++|++..+++.+|..+.+++.+|
T Consensus       177 ~~lA~~~GL~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  177 EALAAAHGLELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             HHHHHHCCCccCcccccCCCCeEEEEeC
Confidence            9999999999999999998877777765

The function of this family is unknown.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.55  E-value=1.5e-13  Score=116.61  Aligned_cols=142  Identities=15%  Similarity=0.176  Sum_probs=102.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCccceeEehhhhcc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPADAVLLKWILHD  201 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~  201 (296)
                      .+..+|||||||+|.++..+++..  .+++++|+ +.+++.|++      ..+++++..+|+....+.||+|++..++||
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence            456799999999999999999874  46999999 899988876      236899999995434346999999999999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh------hcCccccCHHHHHHHHHhc
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV------LLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~rt~~e~~~ll~~a  275 (296)
                      +++++...+++++.+.+++    +.++....   ....   .    .........      .......+.++|.++++++
T Consensus       140 ~~~~~~~~~l~~l~~~~~~----~~~i~~~~---~~~~---~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  205 (230)
T PRK07580        140 YPQEDAARMLAHLASLTRG----SLIFTFAP---YTPL---L----ALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAA  205 (230)
T ss_pred             CCHHHHHHHHHHHHhhcCC----eEEEEECC---ccHH---H----HHHHHhccccCCccCCCCccccCHHHHHHHHHHC
Confidence            9998888999999987653    44433221   1100   0    011110000      0112345889999999999


Q ss_pred             CCceeEEEEcC
Q 022515          276 GFSDYKIIPIL  286 (296)
Q Consensus       276 Gf~~~~~~~~~  286 (296)
                      ||++.++.+..
T Consensus       206 Gf~~~~~~~~~  216 (230)
T PRK07580        206 GFKVVRTERIS  216 (230)
T ss_pred             CCceEeeeecc
Confidence            99999988764

>PLN03075 nicotianamine synthase; Provisional

Probab=99.54  E-value=8e-14  Score=120.34  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=81.4

Q ss_pred             CCCCEEEEecCCchHHHHH--HHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCCCC---CccceeEe
Q 022515          129 EGLNSLVDVGGGIGTAAKA--IAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEAI---SPADAVLL  195 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~~---p~~D~v~~  195 (296)
                      .++.+|+|||||.|.++..  ++..+|+.+++++|. |++++.|++       ..+||+|..+|..+..   .+||+|++
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            3778999999998855433  335689999999999 999988876       3578999999998732   36999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      . ++|+|+.++-.++|+++++.|+|   ||.+++--
T Consensus       202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr~  233 (296)
T PLN03075        202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLRS  233 (296)
T ss_pred             e-cccccccccHHHHHHHHHHhcCC---CcEEEEec
Confidence            9 99999766667999999999999   77776643

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.54  E-value=1.4e-13  Score=113.05  Aligned_cols=126  Identities=18%  Similarity=0.321  Sum_probs=97.5

Q ss_pred             HHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-cccee
Q 022515          121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-PADAV  193 (296)
Q Consensus       121 ~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-~~D~v  193 (296)
                      +..+.  ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++     ...+++++.+|.....+ .||+|
T Consensus        24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v  101 (187)
T PRK08287         24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI  101 (187)
T ss_pred             HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence            34444  56778999999999999999999999999999999 889888865     23579999999865444 59999


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT  273 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~  273 (296)
                      ++....++     ...+++.+.+.|+|   ||++++.....+                            +.+++.++++
T Consensus       102 ~~~~~~~~-----~~~~l~~~~~~Lk~---gG~lv~~~~~~~----------------------------~~~~~~~~l~  145 (187)
T PRK08287        102 FIGGSGGN-----LTAIIDWSLAHLHP---GGRLVLTFILLE----------------------------NLHSALAHLE  145 (187)
T ss_pred             EECCCccC-----HHHHHHHHHHhcCC---CeEEEEEEecHh----------------------------hHHHHHHHHH
Confidence            99765443     24679999999999   898877432110                            4567778999


Q ss_pred             hcCCceeEEEE
Q 022515          274 YAGFSDYKIIP  284 (296)
Q Consensus       274 ~aGf~~~~~~~  284 (296)
                      +.||+.+++..
T Consensus       146 ~~g~~~~~~~~  156 (187)
T PRK08287        146 KCGVSELDCVQ  156 (187)
T ss_pred             HCCCCcceEEE
Confidence            99998776543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.53  E-value=1.1e-13  Score=129.63  Aligned_cols=145  Identities=18%  Similarity=0.251  Sum_probs=111.7

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC---CCC-
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE---AIS-  188 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~---~~p-  188 (296)
                      ...+++.++  ..+..+|||||||+|.++..+++.+  .+++++|+ +.+++.+++   ..++++++.+|+.+   +++ 
T Consensus        26 ~~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         26 RPEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hhHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence            345555555  4456799999999999999999874  48999999 899987654   35689999999864   344 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                       .||+|++..++|++++++..++|+++++.|+|   ||++++.|..........      ..       ......++..+
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~d~~~~~~~~~~------~~-------~~~~~~~~~~~  165 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFRESCFHQSGDSK------RK-------NNPTHYREPRF  165 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEEeccCCCCCccc------cc-------CCCCeecChHH
Confidence             49999999999999998888999999999999   999999997654432110      00       01123457889


Q ss_pred             HHHHHHhcCCceeE
Q 022515          268 WTKLFTYAGFSDYK  281 (296)
Q Consensus       268 ~~~ll~~aGf~~~~  281 (296)
                      |.+++.++||....
T Consensus       166 ~~~~f~~~~~~~~~  179 (475)
T PLN02336        166 YTKVFKECHTRDED  179 (475)
T ss_pred             HHHHHHHheeccCC
Confidence            99999999987653

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.53  E-value=6.9e-14  Score=116.14  Aligned_cols=104  Identities=17%  Similarity=0.293  Sum_probs=88.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC--ccceeEehhhhccCCc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~~~d  204 (296)
                      ..+..+|||||||+|.++..+++..|+.+++++|+ +++++.|++...++++..+|+.++.+  .||+|++..+|||+++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence            34667899999999999999999889999999999 99999998534578889999888544  4999999999999987


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      ++..++++++.++++     +.++|.|...+.
T Consensus       121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~  147 (204)
T TIGR03587       121 DNLPTAYRELYRCSN-----RYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence            778899999999873     788888875543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=1.7e-13  Score=120.02  Aligned_cols=132  Identities=18%  Similarity=0.172  Sum_probs=101.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehhhhccC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKWILHDW  202 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~  202 (296)
                      ++.+|||||||+|..+..+++.  +.+++++|. +.+++.+++    ..-++++...|+.. +.+ .||+|++..++|+.
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence            4469999999999999999885  679999999 888887765    23378888889876 344 59999999999999


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEE
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  282 (296)
                      ++++...+++++.++|+|   ||.+++++....+....++  .             ....++.+|+.+.++.  |+++..
T Consensus       198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v~~~~~~~~~~~~--p-------------~~~~~~~~el~~~~~~--~~i~~~  257 (287)
T PRK12335        198 NRERIPAIIKNMQEHTNP---GGYNLIVCAMDTEDYPCPM--P-------------FSFTFKEGELKDYYQD--WEIVKY  257 (287)
T ss_pred             CHHHHHHHHHHHHHhcCC---CcEEEEEEecccccCCCCC--C-------------CCcccCHHHHHHHhCC--CEEEEE
Confidence            888888999999999999   9998877654433221100  0             0122378899998875  887776


Q ss_pred             E
Q 022515          283 I  283 (296)
Q Consensus       283 ~  283 (296)
                      .
T Consensus       258 ~  258 (287)
T PRK12335        258 N  258 (287)
T ss_pred             e
Confidence            3

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.52  E-value=3.4e-13  Score=109.99  Aligned_cols=134  Identities=17%  Similarity=0.169  Sum_probs=105.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC-CCccceeEehhhhccC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA-ISPADAVLLKWILHDW  202 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~-~p~~D~v~~~~vlh~~  202 (296)
                      .++.+|||+|||+|.++..+++..+  +++++|+ |.+++.+++    ...+++++.+|..+. .+.||+|+++-..|+.
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL   95 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence            3457899999999999999999876  8999999 999988775    234688899998873 3469999998887766


Q ss_pred             Cch-------------------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcccc
Q 022515          203 NDE-------------------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTER  263 (296)
Q Consensus       203 ~d~-------------------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r  263 (296)
                      ++.                   ....+|+++.+.|+|   ||++++.+....                            
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~~~~~~----------------------------  144 (179)
T TIGR00537        96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLIQSSLN----------------------------  144 (179)
T ss_pred             cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEEEeccC----------------------------
Confidence            532                   135689999999999   999988774221                            


Q ss_pred             CHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515          264 DEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY  295 (296)
Q Consensus       264 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  295 (296)
                      ...++.++++++||+...+...+-+.-.++++
T Consensus       145 ~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~  176 (179)
T TIGR00537       145 GEPDTFDKLDERGFRYEIVAERGLFFEELFAI  176 (179)
T ss_pred             ChHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence            25677889999999998888877666666554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.52  E-value=2.3e-13  Score=123.28  Aligned_cols=154  Identities=8%  Similarity=0.082  Sum_probs=114.0

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCCCCCccceeEe
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFEAISPADAVLL  195 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~~~p~~D~v~~  195 (296)
                      .+++.+.  ..++.+|||||||+|.++..+++.+ +.+++++|+ +++++.+++  ....+++..+|+.+..+.||+|++
T Consensus       158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs  234 (383)
T PRK11705        158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS  234 (383)
T ss_pred             HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence            4455555  6778899999999999999998876 679999999 999998876  233588888887653246999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                      ..+++|.++.....++++++++|+|   ||++++.+...+.....     ...+.+-  ....+|...+.+++...++ .
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~~i~~~~~~~~-----~~~~i~~--yifp~g~lps~~~i~~~~~-~  303 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLHTIGSNKTDTN-----VDPWINK--YIFPNGCLPSVRQIAQASE-G  303 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCC---CcEEEEEEccCCCCCCC-----CCCCcee--eecCCCcCCCHHHHHHHHH-C
Confidence            9999999877777899999999999   99999887654432111     0112211  1224566678888888766 5


Q ss_pred             CCceeEEEEcC
Q 022515          276 GFSDYKIIPIL  286 (296)
Q Consensus       276 Gf~~~~~~~~~  286 (296)
                      ||.+..+...+
T Consensus       304 ~~~v~d~~~~~  314 (383)
T PRK11705        304 LFVMEDWHNFG  314 (383)
T ss_pred             CcEEEEEecCh
Confidence            89887776544

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.51  E-value=5.2e-14  Score=103.76  Aligned_cols=89  Identities=24%  Similarity=0.447  Sum_probs=75.0

Q ss_pred             EEEecCCchHHHHHHHHHC---CCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CC--CccceeEeh-hhhcc
Q 022515          134 LVDVGGGIGTAAKAIAKAF---PKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AI--SPADAVLLK-WILHD  201 (296)
Q Consensus       134 vLDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~--p~~D~v~~~-~vlh~  201 (296)
                      |||+|||+|..+..+++.+   |..+++++|+ +++++.+++    ...+++++.+|+.+ +.  +.||+|++. .++|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999987   5689999999 999998876    33589999999988 43  359999995 55999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCc
Q 022515          202 WNDEECVKILKKCKEAITSDGKKG  225 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG  225 (296)
                      +++++..++|+++.+.|+|   ||
T Consensus        81 ~~~~~~~~ll~~~~~~l~p---gG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRP---GG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEE---EE
T ss_pred             CCHHHHHHHHHHHHHHhCC---CC
Confidence            9999999999999999999   66

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.50  E-value=7.8e-14  Score=115.16  Aligned_cols=143  Identities=16%  Similarity=0.162  Sum_probs=103.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CC--CccceeEehhhhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AI--SPADAVLLKWILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~--p~~D~v~~~~vlh~  201 (296)
                      .+.+|||||||.|.++..+++.  +.+++++|+ ++.++.|+.    ..-.+++.+....+ ..  ..||+|++-.||+|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            5689999999999999999998  589999999 999999885    22335566665555 22  46999999999999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh-hhh-hhcC-----ccccCHHHHHHHHHh
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM-LMM-VLLT-----GTERDEKEWTKLFTY  274 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-----g~~rt~~e~~~ll~~  274 (296)
                      .++++  .+++++.+.+||   ||.+++.........    +  ....+.. ..+ ....     .+...++|+..++..
T Consensus       137 v~dp~--~~~~~c~~lvkP---~G~lf~STinrt~ka----~--~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~  205 (243)
T COG2227         137 VPDPE--SFLRACAKLVKP---GGILFLSTINRTLKA----Y--LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLG  205 (243)
T ss_pred             cCCHH--HHHHHHHHHcCC---CcEEEEeccccCHHH----H--HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhccc
Confidence            99987  589999999999   888887765432110    0  0011100 111 1111     244578999999999


Q ss_pred             cCCceeEEEEc
Q 022515          275 AGFSDYKIIPI  285 (296)
Q Consensus       275 aGf~~~~~~~~  285 (296)
                      +|+.......+
T Consensus       206 ~~~~~~~~~g~  216 (243)
T COG2227         206 ANLKIIDRKGL  216 (243)
T ss_pred             CCceEEeecce
Confidence            99988776543

>TIGR03438 probable methyltransferase

Probab=99.49  E-value=3.1e-13  Score=119.04  Aligned_cols=98  Identities=13%  Similarity=0.249  Sum_probs=80.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC--CC-cc-----ce
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA--IS-PA-----DA  192 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~--~p-~~-----D~  192 (296)
                      .++.+|||+|||+|..+..|+++.+ ..+++++|+ ++|++.+++      ...+|.++.+|+.+.  .+ .+     .+
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            3557899999999999999999987 689999999 899887764      234577789999872  32 23     35


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      +++...+|+++++++..+|++++++|+|   ||.++|
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~li  175 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLI  175 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEE
Confidence            6667889999999999999999999999   888876

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK04266 fibrillarin; Provisional

Probab=99.48  E-value=1.4e-12  Score=109.65  Aligned_cols=134  Identities=12%  Similarity=0.143  Sum_probs=94.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC-----CC-ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA-----IS-PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~-----~p-~~D~v~~~~  197 (296)
                      ..++.+|||+|||+|.++..+++..+..+++++|+ +++++.+.+   ...++.++.+|...+     .+ .+|++++  
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~--  147 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ--  147 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE--
Confidence            66788999999999999999999987678999999 877764432   346789999998652     12 4899874  


Q ss_pred             hhccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515          198 ILHDWNDE-ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       198 vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                         +.+++ +...+|+++++.|||   ||+++|.=...+-+....   .               . +..++..++++++|
T Consensus       148 ---d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~~~~d~~~~---~---------------~-~~~~~~~~~l~~aG  202 (226)
T PRK04266        148 ---DVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKARSIDVTKD---P---------------K-EIFKEEIRKLEEGG  202 (226)
T ss_pred             ---CCCChhHHHHHHHHHHHhcCC---CcEEEEEEecccccCcCC---H---------------H-HHHHHHHHHHHHcC
Confidence               44443 234568999999999   999999522111110000   0               0 11244569999999


Q ss_pred             CceeEEEEcCCc
Q 022515          277 FSDYKIIPILGL  288 (296)
Q Consensus       277 f~~~~~~~~~~~  288 (296)
                      |+.++.......
T Consensus       203 F~~i~~~~l~p~  214 (226)
T PRK04266        203 FEILEVVDLEPY  214 (226)
T ss_pred             CeEEEEEcCCCC
Confidence            999998887543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.48  E-value=3.2e-13  Score=118.83  Aligned_cols=141  Identities=13%  Similarity=0.080  Sum_probs=97.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C------CCCeeEEeccCCCCCCccceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D------LANLKYVGGDMFEAISPADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~------~~ri~~~~~D~~~~~p~~D~v~~~~v  198 (296)
                      ++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    .      ..+++|..+|+.+....||+|++..+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            4579999999999999999986  679999999 899988875    1      24688888887653346999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC------ccccCHHHHHHHH
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT------GTERDEKEWTKLF  272 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~rt~~e~~~ll  272 (296)
                      +||++++....+++++.+ +.+    |+++|..  .+....   +.....+...    ..+      ...++.+++++++
T Consensus       222 L~H~p~~~~~~ll~~l~~-l~~----g~liIs~--~p~~~~---~~~l~~~g~~----~~g~~~~~r~y~~s~eel~~lL  287 (315)
T PLN02585        222 LIHYPQDKADGMIAHLAS-LAE----KRLIISF--APKTLY---YDILKRIGEL----FPGPSKATRAYLHAEADVERAL  287 (315)
T ss_pred             EEecCHHHHHHHHHHHHh-hcC----CEEEEEe--CCcchH---HHHHHHHHhh----cCCCCcCceeeeCCHHHHHHHH
Confidence            999998877788888875 454    5555532  111100   0000000000    011      1123899999999


Q ss_pred             HhcCCceeEEEEcC
Q 022515          273 TYAGFSDYKIIPIL  286 (296)
Q Consensus       273 ~~aGf~~~~~~~~~  286 (296)
                      +++||++.......
T Consensus       288 ~~AGf~v~~~~~~~  301 (315)
T PLN02585        288 KKAGWKVARREMTA  301 (315)
T ss_pred             HHCCCEEEEEEEee
Confidence            99999987665443

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.48  E-value=2e-12  Score=107.94  Aligned_cols=132  Identities=13%  Similarity=0.088  Sum_probs=101.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCC-C---
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFE-A---  186 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~-~---  186 (296)
                      .++.+|||+|||.|..+..|+++  +.+++++|+ |..++.+.+                 ...+|++..+|+++ +   
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            45679999999999999999987  889999999 888876421                 13579999999998 4   


Q ss_pred             CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC-CCchhhhhhhhhhhhhhhcCccccCH
Q 022515          187 ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG-DDKSIETQLFFDMLMMVLLTGTERDE  265 (296)
Q Consensus       187 ~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~rt~  265 (296)
                      .+.||.|+-..++|+++.+.....++++.++|+|   ||++++.....++... .+|                  ...+.
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~~~~~~~~~~~gpp------------------~~~~~  169 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLITLDYDQSEMAGPP------------------FSVSP  169 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEcCCCCCCCcC------------------CCCCH
Confidence            2359999999999999998888999999999999   8987777665432211 111                  12388


Q ss_pred             HHHHHHHHhcCCceeEEEE
Q 022515          266 KEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       266 ~e~~~ll~~aGf~~~~~~~  284 (296)
                      +|+++++.. +|.+..+..
T Consensus       170 ~eL~~~f~~-~~~i~~~~~  187 (213)
T TIGR03840       170 AEVEALYGG-HYEIELLES  187 (213)
T ss_pred             HHHHHHhcC-CceEEEEee
Confidence            999998874 455554443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.46  E-value=2.5e-12  Score=105.02  Aligned_cols=119  Identities=23%  Similarity=0.278  Sum_probs=93.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-ccceeEehhhhc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-PADAVLLKWILH  200 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh  200 (296)
                      +++.+|||||||+|..+..+++..|+.+++++|. +.+++.+++     ..++++++.+|+.+ +.. .||+|++..+  
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--  121 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--  121 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence            3478999999999999999999999999999999 899988765     23459999999887 333 5999998652  


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                        .  ....+++.+++.|+|   ||++++.+...                             ...++.++.++.|+++.
T Consensus       122 --~--~~~~~l~~~~~~Lkp---GG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~  165 (187)
T PRK00107        122 --A--SLSDLVELCLPLLKP---GGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE  165 (187)
T ss_pred             --c--CHHHHHHHHHHhcCC---CeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence              2  234789999999999   99988875210                             23456677778899976


Q ss_pred             EEEEc
Q 022515          281 KIIPI  285 (296)
Q Consensus       281 ~~~~~  285 (296)
                      +++..
T Consensus       166 ~~~~~  170 (187)
T PRK00107        166 EVIEL  170 (187)
T ss_pred             eeEEE
Confidence            66543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.46  E-value=7.4e-13  Score=107.64  Aligned_cols=110  Identities=17%  Similarity=0.257  Sum_probs=84.8

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~  190 (296)
                      ..+++..+  .-++.++||+|||.|..+..|+++  +..++.+|. +..++.+++    ..-.|+....|+.+ .++ .|
T Consensus        20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            34555555  445789999999999999999998  889999999 777776654    34449999999988 555 59


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      |+|++..|+++.+.+....+++++.++++|   ||..++...+.
T Consensus        96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~~~~~  136 (192)
T PF03848_consen   96 DFIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIVTFME  136 (192)
T ss_dssp             EEEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEEEEB-
T ss_pred             CEEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEEEecc
Confidence            999999999999999989999999999999   88777765543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.46  E-value=1.3e-12  Score=117.44  Aligned_cols=109  Identities=16%  Similarity=0.257  Sum_probs=87.8

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----C---CCCeeEEeccCCCCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----D---LANLKYVGGDMFEAI-  187 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~---~~ri~~~~~D~~~~~-  187 (296)
                      ..+++.++  .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++     .   ..++++...|.++.. 
T Consensus       218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~  295 (378)
T PRK15001        218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  295 (378)
T ss_pred             HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence            34556665  33346999999999999999999999999999999 888888875     1   247899999998754 


Q ss_pred             C-ccceeEehhhhc---cCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          188 S-PADAVLLKWILH---DWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       188 p-~~D~v~~~~vlh---~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      + .||+|+++-.+|   .+++..+.++++.+++.|+|   ||.++++-
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEEE
Confidence            3 599999965544   34556677999999999999   99998884

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.44  E-value=1.3e-12  Score=106.51  Aligned_cols=92  Identities=21%  Similarity=0.254  Sum_probs=74.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-CccceeEehhhhccC
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-SPADAVLLKWILHDW  202 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-p~~D~v~~~~vlh~~  202 (296)
                      +.+|||||||+|.++..++..+|+.+++++|. +.+++.+++     ..++++++.+|+.+ +. +.||+|++.. +|++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~  121 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL  121 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence            67999999999999999999999999999999 888776654     33579999999987 32 3699998866 5432


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                           ..+++.+++.|+|   ||++++..
T Consensus       122 -----~~~~~~~~~~Lkp---gG~lvi~~  142 (181)
T TIGR00138       122 -----NVLLELTLNLLKV---GGYFLAYK  142 (181)
T ss_pred             -----HHHHHHHHHhcCC---CCEEEEEc
Confidence                 3568888999999   89988763

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.43  E-value=7.9e-13  Score=105.97  Aligned_cols=174  Identities=20%  Similarity=0.160  Sum_probs=114.6

Q ss_pred             HHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCe
Q 022515          103 NFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANL  176 (296)
Q Consensus       103 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri  176 (296)
                      ..|+..|..+-+-+...+-..+.  .+....||+||||||..-. +..--|..++|++|. |.|.+.+.+     ...++
T Consensus        51 ~~yne~~~~ykrelFs~i~~~~g--k~~K~~vLEvgcGtG~Nfk-fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~  127 (252)
T KOG4300|consen   51 SIYNEIADSYKRELFSGIYYFLG--KSGKGDVLEVGCGTGANFK-FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV  127 (252)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhc--ccCccceEEecccCCCCcc-cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence            34555566554333333221111  3445678999999998743 222236789999999 888887765     34556


Q ss_pred             e-EEeccCCC-C-CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhh
Q 022515          177 K-YVGGDMFE-A-IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFD  251 (296)
Q Consensus       177 ~-~~~~D~~~-~-~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~  251 (296)
                      . |+.++..+ + .+  ++|+|++..+|.  +-++.++.|+++++.|+|   ||+++++|+...+...-..  ......+
T Consensus       128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLC--Sve~~~k~L~e~~rlLRp---gG~iifiEHva~~y~~~n~--i~q~v~e  200 (252)
T KOG4300|consen  128 ERFVVADGENLPQLADGSYDTVVCTLVLC--SVEDPVKQLNEVRRLLRP---GGRIIFIEHVAGEYGFWNR--ILQQVAE  200 (252)
T ss_pred             EEEEeechhcCcccccCCeeeEEEEEEEe--ccCCHHHHHHHHHHhcCC---CcEEEEEecccccchHHHH--HHHHHhc
Confidence            6 88888777 4 34  599999999997  444557999999999999   9999999998776543110  0111222


Q ss_pred             hhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCC
Q 022515          252 MLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILG  287 (296)
Q Consensus       252 ~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~  287 (296)
                      -.-...+.|-..|.+-| +.|++|-|+..+..+...
T Consensus       201 p~~~~~~dGC~ltrd~~-e~Leda~f~~~~~kr~~~  235 (252)
T KOG4300|consen  201 PLWHLESDGCVLTRDTG-ELLEDAEFSIDSCKRFNF  235 (252)
T ss_pred             hhhheeccceEEehhHH-HHhhhcccccchhhcccC
Confidence            21122345666677666 567888999888777643

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.42  E-value=2.5e-12  Score=110.06  Aligned_cols=144  Identities=11%  Similarity=0.082  Sum_probs=96.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhcc---CC-C--CCCeeEEeccCCC-C-CCccceeEehhhhc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGL---DS-D--LANLKYVGGDMFE-A-ISPADAVLLKWILH  200 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~-~--~~ri~~~~~D~~~-~-~p~~D~v~~~~vlh  200 (296)
                      .+++|||||||.|.++..++.+.+ ..++++|. +...-+.   ++ .  ..++.+.+.-+.+ + ...||+|++-.||+
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY  193 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY  193 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence            467999999999999999999854 36899997 4333322   22 2  2333444333333 2 23599999999999


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC--chhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD--KSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                      |..++-  ..|+.++..|+|   ||.+++=..+.+.+....  |..+.+.+-++       -...|...+..|++++||+
T Consensus       194 Hrr~Pl--~~L~~Lk~~L~~---gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv-------~FiPs~~~L~~wl~r~gF~  261 (315)
T PF08003_consen  194 HRRSPL--DHLKQLKDSLRP---GGELVLETLVIDGDENTVLVPEDRYAKMRNV-------WFIPSVAALKNWLERAGFK  261 (315)
T ss_pred             ccCCHH--HHHHHHHHhhCC---CCEEEEEEeeecCCCceEEccCCcccCCCce-------EEeCCHHHHHHHHHHcCCc
Confidence            988874  789999999999   777666555555443221  11111111111       1233899999999999999


Q ss_pred             eeEEEEcC
Q 022515          279 DYKIIPIL  286 (296)
Q Consensus       279 ~~~~~~~~  286 (296)
                      .+++..+.
T Consensus       262 ~v~~v~~~  269 (315)
T PF08003_consen  262 DVRCVDVS  269 (315)
T ss_pred             eEEEecCc
Confidence            99987653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.41  E-value=3.1e-12  Score=108.76  Aligned_cols=144  Identities=17%  Similarity=0.146  Sum_probs=100.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-C--C-CccceeEehhhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-A--I-SPADAVLLKWIL  199 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~--~-p~~D~v~~~~vl  199 (296)
                      .+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++    ...++++...|+.+ +  . ..||+|++.+++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            35679999999999999988875  568999999 888877764    23467888877765 2  2 259999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhh-hhhhhhhh--c---CccccCHHHHHHHHH
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF-FDMLMMVL--L---TGTERDEKEWTKLFT  273 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~-~~~~~~~~--~---~g~~rt~~e~~~ll~  273 (296)
                      ++.++..  .+|+++.+.|+|   ||++++...... . ..  . ..... ........  .   .....+.++|.++++
T Consensus       125 ~~~~~~~--~~l~~~~~~L~~---gG~l~v~~~~~~-~-~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  194 (233)
T PRK05134        125 EHVPDPA--SFVRACAKLVKP---GGLVFFSTLNRN-L-KS--Y-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLR  194 (233)
T ss_pred             hccCCHH--HHHHHHHHHcCC---CcEEEEEecCCC-h-HH--H-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHH
Confidence            9988764  789999999999   899887653211 0 00  0 00000 00000000  0   123448899999999


Q ss_pred             hcCCceeEEEE
Q 022515          274 YAGFSDYKIIP  284 (296)
Q Consensus       274 ~aGf~~~~~~~  284 (296)
                      ++||+++....
T Consensus       195 ~~Gf~~v~~~~  205 (233)
T PRK05134        195 QAGLEVQDITG  205 (233)
T ss_pred             HCCCeEeeeee
Confidence            99999887754

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.40  E-value=9.5e-13  Score=107.67  Aligned_cols=142  Identities=20%  Similarity=0.323  Sum_probs=101.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CC---CC-eeEEeccCCC--CCC-ccceeEehhhhc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DL---AN-LKYVGGDMFE--AIS-PADAVLLKWILH  200 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~---~r-i~~~~~D~~~--~~p-~~D~v~~~~vlh  200 (296)
                      +..+.||.|+|.|..+..|+..+ --++-.+|. +..++.|++ ..   .+ .++.+.-+.+  |.+ .||+|++.|++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            46799999999999999887654 347888888 888888876 22   23 3334333333  333 599999999999


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                      |++|++.+++|++++++|+|   +|.|+|=|.+......         .+|-    ..++-.|+.+.|++++++||++++
T Consensus       134 hLTD~dlv~fL~RCk~~L~~---~G~IvvKEN~~~~~~~---------~~D~----~DsSvTRs~~~~~~lF~~AGl~~v  197 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKP---NGVIVVKENVSSSGFD---------EFDE----EDSSVTRSDEHFRELFKQAGLRLV  197 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEE---EEEEEEEEEEESSSEE---------EEET----TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred             cCCHHHHHHHHHHHHHhCcC---CcEEEEEecCCCCCCc---------ccCC----ccCeeecCHHHHHHHHHHcCCEEE
Confidence            99999999999999999999   8999999988765321         1111    124567899999999999999999


Q ss_pred             EEEEcCCc
Q 022515          281 KIIPILGL  288 (296)
Q Consensus       281 ~~~~~~~~  288 (296)
                      +.....++
T Consensus       198 ~~~~Q~~f  205 (218)
T PF05891_consen  198 KEEKQKGF  205 (218)
T ss_dssp             EEEE-TT-
T ss_pred             EeccccCC
Confidence            88776554

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.39  E-value=1.4e-11  Score=103.32  Aligned_cols=133  Identities=12%  Similarity=0.088  Sum_probs=101.1

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCCC---
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFEA---  186 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~~---  186 (296)
                      ..+..+|||+|||.|..+..|+++  +.+++++|+ +..++.+.+                 ...+|++..+|+++.   
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            345679999999999999999986  889999999 888876421                 246899999999983   


Q ss_pred             -CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC-CCchhhhhhhhhhhhhhhcCccccC
Q 022515          187 -ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG-DDKSIETQLFFDMLMMVLLTGTERD  264 (296)
Q Consensus       187 -~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~rt  264 (296)
                       .+.||+|+-+.++|+++.+...+.++++.++|+|   ||+++++....++... .+|                  ...+
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~~~~~~~~~~~gPp------------------~~~~  171 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLVTLDYPQEELAGPP------------------FSVS  171 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEEEEEeCCccCCCCC------------------CCCC
Confidence             2358999999999999999888999999999999   8876665544433221 111                  1238


Q ss_pred             HHHHHHHHHhcCCceeEEEE
Q 022515          265 EKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~  284 (296)
                      .+|+++++.. +|.+..+..
T Consensus       172 ~~el~~~~~~-~~~i~~~~~  190 (218)
T PRK13255        172 DEEVEALYAG-CFEIELLER  190 (218)
T ss_pred             HHHHHHHhcC-CceEEEeee
Confidence            8999999864 266555544

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.38  E-value=1.1e-12  Score=105.54  Aligned_cols=133  Identities=14%  Similarity=0.210  Sum_probs=96.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCCCC--ccceeEehhhhcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEAIS--PADAVLLKWILHD  201 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~  201 (296)
                      -....+++|+|||.|.++..|+.++  -+.+++|+ +..++.|++   ...+|+++.+|+-+..|  .||+|+++-|+|+
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY  118 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred             ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence            4456799999999999999999985  48999999 999999986   45789999999988544  5999999999999


Q ss_pred             CCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          202 WND-EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       202 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                      +++ ++...+++++.++|+|   ||.+++.... ++        .   ..       .-|.....+.+.++|++. |..+
T Consensus       119 L~~~~~L~~~l~~l~~~L~p---gG~LV~g~~r-d~--------~---c~-------~wgh~~ga~tv~~~~~~~-~~~~  175 (201)
T PF05401_consen  119 LDDAEDLRAALDRLVAALAP---GGHLVFGHAR-DA--------N---CR-------RWGHAAGAETVLEMLQEH-LTEV  175 (201)
T ss_dssp             SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE--HH--------H---HH-------HTT-S--HHHHHHHHHHH-SEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCC---CCEEEEEEec-CC--------c---cc-------ccCcccchHHHHHHHHHH-hhhe
Confidence            986 5778899999999999   8888886642 11        0   10       114444677888888886 6655


Q ss_pred             EEEEc
Q 022515          281 KIIPI  285 (296)
Q Consensus       281 ~~~~~  285 (296)
                      +....
T Consensus       176 ~~~~~  180 (201)
T PF05401_consen  176 ERVEC  180 (201)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            55554

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.37  E-value=1.8e-11  Score=109.30  Aligned_cols=109  Identities=17%  Similarity=0.256  Sum_probs=86.3

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC-ccce
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS-PADA  192 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p-~~D~  192 (296)
                      .++..++  .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++    ..-..+++.+|.++..+ .||+
T Consensus       187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl  264 (342)
T PRK09489        187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM  264 (342)
T ss_pred             HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence            3445554  23346899999999999999999999999999999 889988875    22235677888877544 5999


Q ss_pred             eEehhhhccCC---chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          193 VLLKWILHDWN---DEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       193 v~~~~vlh~~~---d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      |+++-.+|+..   .....++++++.+.|+|   ||.++|+-.
T Consensus       265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iVan  304 (342)
T PRK09489        265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIVAN  304 (342)
T ss_pred             EEECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEEEe
Confidence            99998888632   34567899999999999   999988764

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.37  E-value=6.7e-12  Score=103.66  Aligned_cols=141  Identities=13%  Similarity=0.023  Sum_probs=94.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---CCC--ccceeEehhhhccC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---AIS--PADAVLLKWILHDW  202 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh~~  202 (296)
                      ++..+|||||||+|.++..+++.. ..+++++|+ +++++.++  ..+++++.+|+.+   +.+  .||+|++.+++||.
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~--~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~   88 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACV--ARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT   88 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHH--HcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence            356799999999999998887763 668899999 88888875  2457888888865   233  49999999999999


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh-h----------hhhhhhcCccccCHHHHHHH
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF-D----------MLMMVLLTGTERDEKEWTKL  271 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~g~~rt~~e~~~l  271 (296)
                      ++..  .+|+++.+.+++    +  ++.-   +....   +......+ .          .........+..+.+++.++
T Consensus        89 ~d~~--~~l~e~~r~~~~----~--ii~~---p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l  154 (194)
T TIGR02081        89 RNPE--EILDEMLRVGRH----A--IVSF---PNFGY---WRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL  154 (194)
T ss_pred             cCHH--HHHHHHHHhCCe----E--EEEc---CChhH---HHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence            8754  678888776654    2  2221   11000   00000000 0          00000012235589999999


Q ss_pred             HHhcCCceeEEEEcC
Q 022515          272 FTYAGFSDYKIIPIL  286 (296)
Q Consensus       272 l~~aGf~~~~~~~~~  286 (296)
                      ++++||+++.....+
T Consensus       155 l~~~Gf~v~~~~~~~  169 (194)
T TIGR02081       155 CGELNLRILDRAAFD  169 (194)
T ss_pred             HHHCCCEEEEEEEec
Confidence            999999998877664

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.35  E-value=7e-12  Score=95.53  Aligned_cols=101  Identities=19%  Similarity=0.280  Sum_probs=79.7

Q ss_pred             HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CC-Cc
Q 022515          120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AI-SP  189 (296)
Q Consensus       120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~-p~  189 (296)
                      ++..+.  ..+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++     ...+++++.+|...   .. +.
T Consensus        11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (124)
T TIGR02469        11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE   88 (124)
T ss_pred             HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence            344444  45567999999999999999999999999999999 888888765     34679999898764   12 35


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ||+|++....+     ...++++++++.|+|   ||++++.
T Consensus        89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~  121 (124)
T TIGR02469        89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN  121 (124)
T ss_pred             CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence            99999966443     334889999999999   8887764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.34  E-value=2.2e-11  Score=104.62  Aligned_cols=124  Identities=23%  Similarity=0.329  Sum_probs=94.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--ccceeEehh----
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PADAVLLKW----  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~D~v~~~~----  197 (296)
                      ...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++     ..++++++.+|+.+..+  .||+|++.-    
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  166 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence            346899999999999999999999999999999 899988865     33579999999988543  599998832    


Q ss_pred             --hhccCCchH------------------HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515          198 --ILHDWNDEE------------------CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL  257 (296)
Q Consensus       198 --vlh~~~d~~------------------~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (296)
                        .+|.+..+.                  ...+++++.+.|+|   ||.+++...      .                  
T Consensus       167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~~~------~------------------  219 (251)
T TIGR03534       167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLEIG------Y------------------  219 (251)
T ss_pred             hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEEEC------c------------------
Confidence              222222111                  23689999999999   888766320      0                  


Q ss_pred             cCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          258 LTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                           ...+++.++++++||+.+++..-
T Consensus       220 -----~~~~~~~~~l~~~gf~~v~~~~d  242 (251)
T TIGR03534       220 -----DQGEAVRALFEAAGFADVETRKD  242 (251)
T ss_pred             -----cHHHHHHHHHHhCCCCceEEEeC
Confidence                 13567889999999998887664

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.34  E-value=1.3e-11  Score=104.27  Aligned_cols=142  Identities=16%  Similarity=0.138  Sum_probs=100.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CC-CCeeEEeccCCC-C--C-CccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DL-ANLKYVGGDMFE-A--I-SPADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~D~~~-~--~-p~~D~v~~~~vl  199 (296)
                      .+.+|||+|||+|.++..+++..  .+++++|+ +.+++.+++    .. .++++...|+.+ +  . ..||+|++.+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            46799999999999999888864  46999999 888887765    12 268888888765 2  2 259999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh--h-c----CccccCHHHHHHHH
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV--L-L----TGTERDEKEWTKLF  272 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~-~----~g~~rt~~e~~~ll  272 (296)
                      |+.++..  .+|+++.++|+|   ||.+++........  .    .......-.+..  . .    .....+.++|.+++
T Consensus       123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  191 (224)
T TIGR01983       123 EHVPDPQ--AFIRACAQLLKP---GGILFFSTINRTPK--S----YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWL  191 (224)
T ss_pred             HhCCCHH--HHHHHHHHhcCC---CcEEEEEecCCCch--H----HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHH
Confidence            9988765  789999999999   89988765421110  0    000000000000  0 0    11234788999999


Q ss_pred             HhcCCceeEEEE
Q 022515          273 TYAGFSDYKIIP  284 (296)
Q Consensus       273 ~~aGf~~~~~~~  284 (296)
                      +++||+++++..
T Consensus       192 ~~~G~~i~~~~~  203 (224)
T TIGR01983       192 ESAGLRVKDVKG  203 (224)
T ss_pred             HHcCCeeeeeee
Confidence            999999988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.33  E-value=4.1e-11  Score=104.41  Aligned_cols=136  Identities=21%  Similarity=0.324  Sum_probs=99.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--ccceeEehh--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PADAVLLKW--  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~D~v~~~~--  197 (296)
                      ..+..+|||+|||+|..+..++..+|..+++++|+ +.+++.+++     ...+++++.+|++++.+  .||+|++.-  
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            34567999999999999999999999999999999 888888775     34689999999988543  599998842  


Q ss_pred             ----hhccCCc------------------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhh
Q 022515          198 ----ILHDWND------------------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM  255 (296)
Q Consensus       198 ----vlh~~~d------------------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~  255 (296)
                          .++....                  +....+++++.+.|+|   ||++++ +.     ...               
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~-e~-----g~~---------------  241 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLL-EI-----GYD---------------  241 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEE-EE-----Cch---------------
Confidence                1111111                  1235788999999999   888776 22     000               


Q ss_pred             hhcCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEEe
Q 022515          256 VLLTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEVY  295 (296)
Q Consensus       256 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~  295 (296)
                              ..+++.+++++.||+.++++. ..+...++.++
T Consensus       242 --------~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~  274 (275)
T PRK09328        242 --------QGEAVRALLAAAGFADVETRKDLAGRDRVVLGR  274 (275)
T ss_pred             --------HHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence                    235688999999999777643 44555666654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.32  E-value=4.8e-11  Score=102.46  Aligned_cols=125  Identities=20%  Similarity=0.269  Sum_probs=92.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCccceeEehhhhcc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPADAVLLKWILHD  201 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~  201 (296)
                      .++.+|||||||+|.+++.+++..+ .+++++|+ |.+++.|++      ..+++.+..+|.     .||+|+++...  
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~--  189 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA--  189 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence            4678999999999999988776543 36999999 899988875      224444444432     59999875322  


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                         +....+++++.+.|+|   ||++++......                            ..+++.+.+++.||++.+
T Consensus       190 ---~~~~~l~~~~~~~Lkp---gG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~  235 (250)
T PRK00517        190 ---NPLLELAPDLARLLKP---GGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDE  235 (250)
T ss_pred             ---HHHHHHHHHHHHhcCC---CcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEE
Confidence               2345789999999999   899888653210                            356788899999999999


Q ss_pred             EEEcCCcceEEEEe
Q 022515          282 IIPILGLRSLIEVY  295 (296)
Q Consensus       282 ~~~~~~~~~vi~~~  295 (296)
                      +.......+++..+
T Consensus       236 ~~~~~~W~~~~~~~  249 (250)
T PRK00517        236 VLERGEWVALVGKK  249 (250)
T ss_pred             EEEeCCEEEEEEEe
Confidence            88877777766544

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.31  E-value=9.8e-12  Score=100.45  Aligned_cols=99  Identities=22%  Similarity=0.375  Sum_probs=80.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--ccceeEehhhhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PADAVLLKWILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~  201 (296)
                      ...+|||+|||+|.++..+++++|..+++++|+ +.+++.+++     ..+.++++..|.++..+  .||+|+++=-+|.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            567999999999999999999999999999999 899988876     22339999999999554  5999999877765


Q ss_pred             CCc---hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          202 WND---EECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       202 ~~d---~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      -.+   +-..++++.+.+.|+|   ||+++++-
T Consensus       111 ~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv~  140 (170)
T PF05175_consen  111 GGDDGLDLLRDFIEQARRYLKP---GGRLFLVI  140 (170)
T ss_dssp             TSHCHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHhccC---CCEEEEEe
Confidence            443   2356899999999999   99997654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PTZ00146 fibrillarin; Provisional

Probab=99.30  E-value=1.5e-10  Score=99.74  Aligned_cols=132  Identities=11%  Similarity=0.124  Sum_probs=91.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hh----HhhccCCCCCCeeEEeccCCCC------CCccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PH----VVNGLDSDLANLKYVGGDMFEA------ISPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~ri~~~~~D~~~~------~p~~D~v~~  195 (296)
                      +.+..+|||+|||+|.++.++++.. +.-+++.+|+ +.    +++.++ ...+|.++.+|...+      .+.+|+|++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak-~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK-KRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            5677899999999999999999986 3458999998 65    445554 447789999998653      235899988


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                      ...   .++ +...++.++++.|||   ||+++|......-+...++    ...+             . +|. ++|+++
T Consensus       209 Dva---~pd-q~~il~~na~r~LKp---GG~~vI~ika~~id~g~~p----e~~f-------------~-~ev-~~L~~~  262 (293)
T PTZ00146        209 DVA---QPD-QARIVALNAQYFLKN---GGHFIISIKANCIDSTAKP----EVVF-------------A-SEV-QKLKKE  262 (293)
T ss_pred             eCC---Ccc-hHHHHHHHHHHhccC---CCEEEEEEeccccccCCCH----HHHH-------------H-HHH-HHHHHc
Confidence            763   133 344566789999999   9999884222111111100    0000             2 344 889999


Q ss_pred             CCceeEEEEcC
Q 022515          276 GFSDYKIIPIL  286 (296)
Q Consensus       276 Gf~~~~~~~~~  286 (296)
                      ||+.++...+.
T Consensus       263 GF~~~e~v~L~  273 (293)
T PTZ00146        263 GLKPKEQLTLE  273 (293)
T ss_pred             CCceEEEEecC
Confidence            99988888775

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.27  E-value=1.3e-11  Score=101.53  Aligned_cols=146  Identities=21%  Similarity=0.318  Sum_probs=110.5

Q ss_pred             CEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC-----CC--ccceeEehh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA-----IS--PADAVLLKW  197 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~-----~p--~~D~v~~~~  197 (296)
                      .+||+||||.|....-+++..|+  +++...|- |..++..++    ...|+.-...|+..+     .+  ..|++++.+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            38999999999999999999888  99999999 888887765    456666666677652     11  389999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcc---ccCHHHHHHHHHh
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGT---ERDEKEWTKLFTY  274 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~rt~~e~~~ll~~  274 (296)
                      +|--.+.++....++++++.|||   ||.|++-|....+-..- .+ .....++-+..+...|.   ..+.+++++++.+
T Consensus       153 vLSAi~pek~~~a~~nl~~llKP---GG~llfrDYg~~Dlaql-RF-~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~  227 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFRDYGRYDLAQL-RF-KKGQCISENFYVRGDGTRAYFFTEEELDELFTK  227 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCC---CcEEEEeecccchHHHH-hc-cCCceeecceEEccCCceeeeccHHHHHHHHHh
Confidence            99999999999999999999999   99999999765542211 00 01123333333333333   3499999999999


Q ss_pred             cCCceeEE
Q 022515          275 AGFSDYKI  282 (296)
Q Consensus       275 aGf~~~~~  282 (296)
                      |||..++.
T Consensus       228 agf~~~~~  235 (264)
T KOG2361|consen  228 AGFEEVQL  235 (264)
T ss_pred             cccchhcc
Confidence            99987664

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.27  E-value=2.5e-11  Score=97.06  Aligned_cols=128  Identities=18%  Similarity=0.198  Sum_probs=88.4

Q ss_pred             Eeccc-hhHhhccCC--------CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCc
Q 022515          158 TCFDL-PHVVNGLDS--------DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKG  225 (296)
Q Consensus       158 ~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG  225 (296)
                      +++|+ ++|++.|++        ...+++++.+|..+ +.+  .||+|++..++|++++..  ++|++++++|||   ||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkp---GG   75 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKP---GS   75 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCc---Ce
Confidence            47899 999998853        13579999999988 665  499999999999998754  889999999999   99


Q ss_pred             EEEEEeeeeCCCCCCCchhhhhhhhhhhhhh----hcC------------ccccCHHHHHHHHHhcCCceeEEEEcC-Cc
Q 022515          226 KVIIIDMIRENKKGDDKSIETQLFFDMLMMV----LLT------------GTERDEKEWTKLFTYAGFSDYKIIPIL-GL  288 (296)
Q Consensus       226 ~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~  288 (296)
                      +++|.|...++....   .....++-.....    ..+            ....+.+++.++|+++||+.++.+... +.
T Consensus        76 ~l~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~  152 (160)
T PLN02232         76 RVSILDFNKSNQSVT---TFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGF  152 (160)
T ss_pred             EEEEEECCCCChHHH---HHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchH
Confidence            999999865432110   0000000000000    000            123388999999999999998887764 33


Q ss_pred             ceEEE
Q 022515          289 RSLIE  293 (296)
Q Consensus       289 ~~vi~  293 (296)
                      ..+..
T Consensus       153 ~~~~~  157 (160)
T PLN02232        153 MGNLV  157 (160)
T ss_pred             hHeeE
Confidence            44443

>PRK14968 putative methyltransferase; Provisional

Probab=99.26  E-value=2e-10  Score=94.19  Aligned_cols=135  Identities=18%  Similarity=0.230  Sum_probs=96.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCC-eeEEeccCCCCCC--ccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLAN-LKYVGGDMFEAIS--PADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~D~~~~~p--~~D~v~~~~v  198 (296)
                      .++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++      ..++ +.++.+|+.++.+  .||+|+++..
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence            45678999999999999999988  689999999 889888765      2233 8999999988544  4999998654


Q ss_pred             hccCC-------------------chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC
Q 022515          199 LHDWN-------------------DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT  259 (296)
Q Consensus       199 lh~~~-------------------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (296)
                      ++...                   ......+++++.+.|+|   ||++++.....                         
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~~~~-------------------------  151 (188)
T PRK14968        100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQSSL-------------------------  151 (188)
T ss_pred             cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEEccc-------------------------
Confidence            32211                   11235689999999999   89887754210                         


Q ss_pred             ccccCHHHHHHHHHhcCCceeEEEEcC---CcceEEEEeC
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKIIPIL---GLRSLIEVYP  296 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~~~~~---~~~~vi~~~~  296 (296)
                         ...+++.++++++||++..+....   ....+++.+|
T Consensus       152 ---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  188 (188)
T PRK14968        152 ---TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK  188 (188)
T ss_pred             ---CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence               034567889999999987765542   2234555543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.26  E-value=1.4e-11  Score=102.40  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=78.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccC-CC-C--CC--ccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDM-FE-A--IS--PADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~-~~-~--~p--~~D~v~~~~  197 (296)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ...+++++.+|+ .. +  ++  .+|+|++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            567999999999999999999999999999999 999988865     236899999998 43 3  33  499999865


Q ss_pred             hhccCC------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          198 ILHDWN------DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       198 vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ..+...      ......+|++++++|+|   ||.+++..
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~~  156 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFAT  156 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEEc
Confidence            442111      11135789999999999   99998864

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.26  E-value=1.4e-10  Score=92.70  Aligned_cols=101  Identities=21%  Similarity=0.273  Sum_probs=83.3

Q ss_pred             HHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCCccc
Q 022515          121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AISPAD  191 (296)
Q Consensus       121 ~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p~~D  191 (296)
                      +..+.  ..++.+++|||||||..+++++...|..+++.+|. ++.++..++     ..++++++.||.-+   +.+.+|
T Consensus        27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d  104 (187)
T COG2242          27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD  104 (187)
T ss_pred             HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence            44444  67889999999999999999999999999999998 777766554     68999999999876   344699


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .|++...-      ....+|+.+...|+|   ||+|++.-.
T Consensus       105 aiFIGGg~------~i~~ile~~~~~l~~---ggrlV~nai  136 (187)
T COG2242         105 AIFIGGGG------NIEEILEAAWERLKP---GGRLVANAI  136 (187)
T ss_pred             EEEECCCC------CHHHHHHHHHHHcCc---CCeEEEEee
Confidence            99997652      345789999999999   999887553

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.26  E-value=7.8e-11  Score=94.71  Aligned_cols=143  Identities=15%  Similarity=0.139  Sum_probs=97.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC---CC--ccceeEehhhhcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA---IS--PADAVLLKWILHD  201 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~---~p--~~D~v~~~~vlh~  201 (296)
                      .+++.+|||+|||.|.++..|.+. .+.++.++|+ ++-+..+.  ...++++.+|+.+.   +|  .||.|+++.+|.+
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv--~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~   87 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV--ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA   87 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH--HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence            357799999999999999888885 5899999999 77666653  56688999999873   45  4999999999998


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC---------CCCchhh-h-hhhhhhhhhhhcCccccCHHHHHH
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK---------GDDKSIE-T-QLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~---------~~~~~~~-~-~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      ...++  ++|+++.|+-+      +.+|.=+-.....         .. |.+. . -.|++     ..+-+..|..++++
T Consensus        88 ~~~P~--~vL~EmlRVgr------~~IVsFPNFg~W~~R~~l~~~Grm-Pvt~~lPy~WYd-----TPNih~~Ti~DFe~  153 (193)
T PF07021_consen   88 VRRPD--EVLEEMLRVGR------RAIVSFPNFGHWRNRLQLLLRGRM-PVTKALPYEWYD-----TPNIHLCTIKDFED  153 (193)
T ss_pred             HhHHH--HHHHHHHHhcC------eEEEEecChHHHHHHHHHHhcCCC-CCCCCCCCcccC-----CCCcccccHHHHHH
Confidence            87766  67888866643      3333221110000         00 0000 0 00111     01223449999999


Q ss_pred             HHHhcCCceeEEEEcCC
Q 022515          271 LFTYAGFSDYKIIPILG  287 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~~  287 (296)
                      +.++.|+++.+...+.+
T Consensus       154 lc~~~~i~I~~~~~~~~  170 (193)
T PF07021_consen  154 LCRELGIRIEERVFLDG  170 (193)
T ss_pred             HHHHCCCEEEEEEEEcC
Confidence            99999999998877653

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.25  E-value=2.8e-10  Score=95.15  Aligned_cols=103  Identities=10%  Similarity=0.039  Sum_probs=87.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCC-CC--
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFE-AI--  187 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~-~~--  187 (296)
                      .++.+||+.|||.|.-+..|++.  +.+++++|+ +..++.+.+                 ...+|++.++|+++ +.  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            45689999999999999999997  789999999 777776421                 35689999999998 42  


Q ss_pred             ---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          188 ---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       188 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                         ..||+|+=..+++.++.+...+..+++.+.|+|   ||+++++....+.
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll~~~~~~  168 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLLVMEHDK  168 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEEEEecCC
Confidence               259999999999999999989999999999999   9998888764443

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.25  E-value=1.1e-10  Score=96.73  Aligned_cols=94  Identities=19%  Similarity=0.277  Sum_probs=75.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C-CccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I-SPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~-p~~D~v~~  195 (296)
                      ..++.+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++      ..++++++.+|+.+  + . +.||+|++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            5677899999999999999998764 6679999999 999987765      25789999999876  2 2 35999998


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ..     .......+++.+.+.|+|   ||++++
T Consensus       118 ~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~  143 (198)
T PRK00377        118 GG-----GSEKLKEIISASWEIIKK---GGRIVI  143 (198)
T ss_pred             CC-----CcccHHHHHHHHHHHcCC---CcEEEE
Confidence            43     223345789999999999   898875

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.24  E-value=2.5e-10  Score=99.83  Aligned_cols=132  Identities=16%  Similarity=0.264  Sum_probs=95.7

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEeh------
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLK------  196 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~------  196 (296)
                      .+|||+|||+|.++..++..+|+.+++++|+ +.+++.|++      ..++++++.+|++++.+  .||+|+++      
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6899999999999999999999999999999 889988776      34579999999998654  59999884      


Q ss_pred             -------hhhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC
Q 022515          197 -------WILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT  259 (296)
Q Consensus       197 -------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (296)
                             .++++-|.          +....+++++.+.|+|   ||.+ ++|....                        
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l-~~e~g~~------------------------  247 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFL-VCEIGNW------------------------  247 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEE-EEEECcc------------------------
Confidence                   23333221          1345789999999999   7765 4553210                        


Q ss_pred             ccccCHHHHHHHHH-hcCCceeEEEE-cCCcceEEEEe
Q 022515          260 GTERDEKEWTKLFT-YAGFSDYKIIP-ILGLRSLIEVY  295 (296)
Q Consensus       260 g~~rt~~e~~~ll~-~aGf~~~~~~~-~~~~~~vi~~~  295 (296)
                          ..+++.+++. +.||..+++++ ..+...++.++
T Consensus       248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~  281 (284)
T TIGR00536       248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF  281 (284)
T ss_pred             ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence                2345666777 46887766654 34555555443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.24  E-value=1.9e-10  Score=97.55  Aligned_cols=156  Identities=15%  Similarity=0.163  Sum_probs=115.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC------CCcccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA------ISPADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~------~p~~D~v  193 (296)
                      ..+-+||||.||+|.+....+..+|.  .++.+.|. |.-++..++      +.+-++|+.+|.|+.      .|..+++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~  213 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA  213 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence            35679999999999999999999997  78999998 777777655      556669999999982      2458999


Q ss_pred             EehhhhccCCchHHH-HHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCc-----cccCHHH
Q 022515          194 LLKWILHDWNDEECV-KILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTG-----TERDEKE  267 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~rt~~e  267 (296)
                      +.+.+...|+|.+.+ ..|+.+.+++.|   ||.++-...-+++...         +.......+-+|     +.||..|
T Consensus       214 iVsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyTgQPwHPQle---------~IAr~LtsHr~g~~WvMRrRsq~E  281 (311)
T PF12147_consen  214 IVSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYTGQPWHPQLE---------MIARVLTSHRDGKAWVMRRRSQAE  281 (311)
T ss_pred             EEecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEcCCCCCcchH---------HHHHHHhcccCCCceEEEecCHHH
Confidence            999999999998755 469999999999   8887766543333211         111111111122     4679999


Q ss_pred             HHHHHHhcCCceeEEEE-cCCcceEEEEeC
Q 022515          268 WTKLFTYAGFSDYKIIP-ILGLRSLIEVYP  296 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~  296 (296)
                      +.+|.++|||+.+.... --+.++|-.|++
T Consensus       282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  282 MDQLVEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HHHHHHHcCCchhhheeccCCceEEEeecC
Confidence            99999999999665433 235567776654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.22  E-value=3.5e-10  Score=102.02  Aligned_cols=135  Identities=16%  Similarity=0.246  Sum_probs=96.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC-CC---ccceeEehhhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA-IS---PADAVLLKWIL  199 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~-~p---~~D~v~~~~vl  199 (296)
                      .+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++    ...+++++.+|+++. .+   .||+|+++=--
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY  329 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY  329 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence            3456999999999999999999999999999999 999998876    345899999999873 32   49999983211


Q ss_pred             c---------------------cCCc--hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515          200 H---------------------DWND--EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV  256 (296)
Q Consensus       200 h---------------------~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  256 (296)
                      .                     ...+  +-..++++.+.+.|+|   ||.++ +|.-..                     
T Consensus       330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~li-lEiG~~---------------------  384 (423)
T PRK14966        330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLL-LEHGFD---------------------  384 (423)
T ss_pred             CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEE-EEECcc---------------------
Confidence            0                     0000  1123677777888998   77654 443110                     


Q ss_pred             hcCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEEe
Q 022515          257 LLTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEVY  295 (296)
Q Consensus       257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~  295 (296)
                             ..+++.+++++.||+.+++.+ ..+...++.++
T Consensus       385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~  417 (423)
T PRK14966        385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK  417 (423)
T ss_pred             -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence                   345788899999999877655 45555666554

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=5e-10  Score=96.15  Aligned_cols=111  Identities=15%  Similarity=0.255  Sum_probs=88.4

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-c
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-P  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-~  189 (296)
                      ..-+++.++  .....+|||+|||.|.+++.+++.+|..+++.+|. ...++.+++     ..++..+...|.+++.. .
T Consensus       147 S~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k  224 (300)
T COG2813         147 SRLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK  224 (300)
T ss_pred             HHHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence            345677777  44455999999999999999999999999999999 778888876     22333567778888655 5


Q ss_pred             cceeEehhhhccC---CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          190 ADAVLLKWILHDW---NDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       190 ~D~v~~~~vlh~~---~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ||+|+++=-+|.=   .+.-+.++++.+.+.|++   ||.|.|+-.
T Consensus       225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iVan  267 (300)
T COG2813         225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIVAN  267 (300)
T ss_pred             ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEEEc
Confidence            9999998777742   233445899999999999   999998875

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.22  E-value=7.1e-11  Score=98.36  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--  188 (296)
                      .+++.+.  ..++.+|||||||+|..+..+++..+ ..+++++|+ +++++.+++      ..++++++.+|..+..+  
T Consensus        63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~  140 (205)
T PRK13944         63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH  140 (205)
T ss_pred             HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence            3444444  55678999999999999999998764 568999999 898887765      23579999999987332  


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                       .||+|++...+++++        +++.+.|+|   ||++++.
T Consensus       141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~  172 (205)
T PRK13944        141 APFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP  172 (205)
T ss_pred             CCccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence             599999998887555        356778999   9998774

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.22  E-value=2.4e-10  Score=100.77  Aligned_cols=95  Identities=21%  Similarity=0.337  Sum_probs=76.0

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEehh-----
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLKW-----  197 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~~-----  197 (296)
                      .+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+++..+  .||+|+++=     
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            6899999999999999999999999999999 999988876      34689999999987544  499999851     


Q ss_pred             --------hhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          198 --------ILHDWND----------EECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       198 --------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                              .+++.|.          +....+++++.+.|+|   ||++++
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~  261 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVV  261 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence                    1122221          2235889999999999   887665

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.20  E-value=3.4e-10  Score=98.88  Aligned_cols=122  Identities=17%  Similarity=0.290  Sum_probs=90.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEeh----
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLK----  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~----  196 (296)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+++..+  .||+|+++    
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            457899999999999999999999999999999 899988876      34689999999987554  49999984    


Q ss_pred             ---------hhhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515          197 ---------WILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL  257 (296)
Q Consensus       197 ---------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (296)
                               ..+++.|.          +....+++++.+.|+|   ||+++ +|...                       
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~-~e~g~-----------------------  253 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLV-VEVGN-----------------------  253 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEE-EEECc-----------------------
Confidence                     11122221          1235789999999999   78765 44310                       


Q ss_pred             cCccccCHHHHHHHHHhcCCceeEEEE
Q 022515          258 LTGTERDEKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~  284 (296)
                            +.+++.+++.++||.-.....
T Consensus       254 ------~~~~v~~~~~~~~~~~~~~~~  274 (284)
T TIGR03533       254 ------SMEALEEAYPDVPFTWLEFEN  274 (284)
T ss_pred             ------CHHHHHHHHHhCCCceeeecC
Confidence                  234667778888887654433

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.19  E-value=5.4e-11  Score=98.22  Aligned_cols=98  Identities=19%  Similarity=0.289  Sum_probs=77.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C---CC--ccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A---IS--PADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~---~p--~~D~v~~~~  197 (296)
                      ...++||||||+|.++..+++++|+.+++++|+ +.+++.|++     ...+++++.+|+.+ .   .+  .+|.+++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            456999999999999999999999999999999 888888764     34589999999875 2   33  378888765


Q ss_pred             hhccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          198 ILHDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       198 vlh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ..+ |+...       ...+++.++++|+|   ||.+++..
T Consensus        96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~t  132 (194)
T TIGR00091        96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFKT  132 (194)
T ss_pred             CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEEe
Confidence            432 33221       14689999999999   99987765

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.18  E-value=3e-10  Score=95.51  Aligned_cols=126  Identities=11%  Similarity=0.159  Sum_probs=99.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C--CC--ccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A--IS--PADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~--~p--~~D~v~~  195 (296)
                      .....+|||+|||+|..+..++++++..+++++++ +.+.+.|++      +.+||+++.+|+.+ .  .+  .||+|++
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence            34478999999999999999999999999999999 899998877      78999999999987 2  22  4899998


Q ss_pred             hhhhccCCc----------------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC
Q 022515          196 KWILHDWND----------------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT  259 (296)
Q Consensus       196 ~~vlh~~~d----------------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (296)
                      +=-.+.-++                -....+++.+.+.|||   ||++.++-..           .              
T Consensus       122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V~r~-----------e--------------  173 (248)
T COG4123         122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFVHRP-----------E--------------  173 (248)
T ss_pred             CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEEecH-----------H--------------
Confidence            533322221                2346789999999999   9998887521           0              


Q ss_pred             ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                          ...|+.+++++.+|...++..+
T Consensus       174 ----rl~ei~~~l~~~~~~~k~i~~V  195 (248)
T COG4123         174 ----RLAEIIELLKSYNLEPKRIQFV  195 (248)
T ss_pred             ----HHHHHHHHHHhcCCCceEEEEe
Confidence                3457888999999988777665

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.17  E-value=2.8e-10  Score=95.23  Aligned_cols=133  Identities=17%  Similarity=0.184  Sum_probs=100.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCC-CC-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFE-AI-  187 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~-~~-  187 (296)
                      ..+..+||..|||.|.-+..|+++  +.+++++|+ +..++.+.+                 ..++|++.++|||+ +. 
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~  112 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE  112 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence            456679999999999999999987  789999999 888876511                 25689999999999 32 


Q ss_pred             --CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC-CCchhhhhhhhhhhhhhhcCccccC
Q 022515          188 --SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG-DDKSIETQLFFDMLMMVLLTGTERD  264 (296)
Q Consensus       188 --p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~rt  264 (296)
                        +.||+|+=..+|+-++.+...+..+++.+.|+|   ||+++++....+.... .||+                  ..+
T Consensus       113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi~l~~~~~~~~GPPf------------------~v~  171 (218)
T PF05724_consen  113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLITLEYPQGEMEGPPF------------------SVT  171 (218)
T ss_dssp             CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEEEEES-CSCSSSSS----------------------
T ss_pred             hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence              249999999999999999999999999999999   8996555544433221 2222                  127


Q ss_pred             HHHHHHHHHhcCCceeEEEE
Q 022515          265 EKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~  284 (296)
                      .+|+++++. .+|++..+..
T Consensus       172 ~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  172 EEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             HHHHHHHHT-TTEEEEEEEE
T ss_pred             HHHHHHHhc-CCcEEEEEec
Confidence            899999999 7888776654

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PHA03411 putative methyltransferase; Provisional

Probab=99.17  E-value=3.1e-10  Score=96.84  Aligned_cols=124  Identities=15%  Similarity=0.216  Sum_probs=92.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEehhhhccCCchH
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLLKWILHDWNDEE  206 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~d~~  206 (296)
                      ...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++...+++++.+|+.+ ... .||+|++.--.++.+.++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d  143 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD  143 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence            346999999999999999999887789999999 99999887644689999999998 323 599999977777654332


Q ss_pred             H------------------HHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          207 C------------------VKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       207 ~------------------~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      .                  .+.++.+...|+|   +|.+.++  .. .   . |      ++         ....+.+|+
T Consensus       144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~--ys-s---~-~------~y---------~~sl~~~~y  198 (279)
T PHA03411        144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA--YS-G---R-P------YY---------DGTMKSNKY  198 (279)
T ss_pred             hhhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE--Ee-c---c-c------cc---------cccCCHHHH
Confidence            1                  3566777788888   7765555  11 1   0 0      11         111278999


Q ss_pred             HHHHHhcCCc
Q 022515          269 TKLFTYAGFS  278 (296)
Q Consensus       269 ~~ll~~aGf~  278 (296)
                      +.+++++||.
T Consensus       199 ~~~l~~~g~~  208 (279)
T PHA03411        199 LKWSKQTGLV  208 (279)
T ss_pred             HHHHHhcCcE
Confidence            9999999986

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.16  E-value=2.4e-10  Score=95.66  Aligned_cols=101  Identities=17%  Similarity=0.222  Sum_probs=78.7

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---  187 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---  187 (296)
                      ..++..++  ..++.+|||||||+|.++..+++.. ++.+++++|+ +++++.+++     ..++++++.+|.....   
T Consensus        66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~  143 (212)
T PRK13942         66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN  143 (212)
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence            44555555  6778899999999999999888875 4579999999 999988876     3468999999988732   


Q ss_pred             CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ..||+|++....++.+        +.+.+.|+|   ||++++..
T Consensus       144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~~  176 (212)
T PRK13942        144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIPV  176 (212)
T ss_pred             CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEEE
Confidence            2599999987665433        356667999   99988853

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.14  E-value=8.4e-10  Score=103.68  Aligned_cols=133  Identities=17%  Similarity=0.280  Sum_probs=96.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--ccceeEehh---
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--PADAVLLKW---  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~~D~v~~~~---  197 (296)
                      +..+|||+|||+|.+++.++..+|+.+++++|+ +.+++.|++      ..++++++.+|+++..+  .||+|+++-   
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence            346899999999999999999999999999999 889988876      35689999999987543  599999831   


Q ss_pred             -----------hhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515          198 -----------ILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV  256 (296)
Q Consensus       198 -----------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  256 (296)
                                 ++.+.|.          +....+++++.+.|+|   ||.+++ |.-.     .                
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~l-Eig~-----~----------------  272 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIIL-EIGF-----K----------------  272 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEE-EECC-----c----------------
Confidence                       1111111          1224678889999999   887654 4210     0                


Q ss_pred             hcCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEE
Q 022515          257 LLTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEV  294 (296)
Q Consensus       257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~  294 (296)
                             ..+++.+++.+.||+.+++.. ..+...++.+
T Consensus       273 -------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~  304 (506)
T PRK01544        273 -------QEEAVTQIFLDHGYNIESVYKDLQGHSRVILI  304 (506)
T ss_pred             -------hHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence                   345678888999998777655 4555555544

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.14  E-value=2.5e-10  Score=89.91  Aligned_cols=124  Identities=19%  Similarity=0.176  Sum_probs=94.1

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC-C-C-ccceeEehhhhcc
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA-I-S-PADAVLLKWILHD  201 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~-~-p-~~D~v~~~~vlh~  201 (296)
                      .+|||+|||.|+++..|++.-=..+.+++|. +..++.|+.      ..+.|+|...|+.+| + + +||+|+=...+.-
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            3999999999999999998743345889998 888777654      566799999999994 2 3 4888876554432


Q ss_pred             ------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          202 ------WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       202 ------~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                            -++......+..+.+.|+|   ||+++|...-                             +|.+|+.+.++.-
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~---~gifvItSCN-----------------------------~T~dELv~~f~~~  196 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVITSCN-----------------------------FTKDELVEEFENF  196 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCC---CcEEEEEecC-----------------------------ccHHHHHHHHhcC
Confidence                  2233334568888899999   8888876531                             1889999999999


Q ss_pred             CCceeEEEEcCC
Q 022515          276 GFSDYKIIPILG  287 (296)
Q Consensus       276 Gf~~~~~~~~~~  287 (296)
                      ||.....+|.+.
T Consensus       197 ~f~~~~tvp~pt  208 (227)
T KOG1271|consen  197 NFEYLSTVPTPT  208 (227)
T ss_pred             CeEEEEeeccce
Confidence            999988888763

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.14  E-value=1.5e-10  Score=100.70  Aligned_cols=90  Identities=17%  Similarity=0.296  Sum_probs=73.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCC---CeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPK---LECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDW  202 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~  202 (296)
                      +..+|||||||+|.++..+++.+|.   .+++++|+ +.+++.|++...++++..+|..+ +++  .||+|+....    
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            4578999999999999999998874   37899999 89999887655678999999887 655  4999997543    


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +     ..+++++++|+|   ||+++++.
T Consensus       161 ~-----~~~~e~~rvLkp---gG~li~~~  181 (272)
T PRK11088        161 P-----CKAEELARVVKP---GGIVITVT  181 (272)
T ss_pred             C-----CCHHHHHhhccC---CCEEEEEe
Confidence            1     236788999999   99998875

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.13  E-value=3e-10  Score=95.35  Aligned_cols=99  Identities=15%  Similarity=0.223  Sum_probs=77.4

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p  188 (296)
                      .+++.+.  ..++.+|||||||+|.++..+++..+ +.+++++|+ +++++.|++     ..++++++.+|..+..   .
T Consensus        68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            4445555  66788999999999999999999864 467999999 999988875     3468999999998732   2


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      .||+|++....++        +.+.+.+.|+|   ||++++.
T Consensus       146 ~fD~Ii~~~~~~~--------~~~~~~~~L~~---gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAAGPK--------IPEALIDQLKE---GGILVMP  176 (215)
T ss_pred             CCCEEEEcCCccc--------ccHHHHHhcCc---CcEEEEE
Confidence            5999998765543        34457788999   9998874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK04457 spermidine synthase; Provisional

Probab=99.12  E-value=1.7e-10  Score=99.46  Aligned_cols=98  Identities=19%  Similarity=0.321  Sum_probs=78.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CCC-ccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AIS-PADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~p-~~D~v~~~~  197 (296)
                      +++.+|||||||+|.++..+++.+|+.+++++|+ |++++.|++      ..+|++++.+|..+   ..+ .||+|++..
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            3567999999999999999999999999999999 999998876      24789999999865   233 599999853


Q ss_pred             hhcc--CCch-HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          198 ILHD--WNDE-ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       198 vlh~--~~d~-~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                       .+.  .+.. ...++++++++.|+|   ||.+++.
T Consensus       145 -~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin  176 (262)
T PRK04457        145 -FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN  176 (262)
T ss_pred             -CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence             221  1211 125899999999999   8888774

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.12  E-value=7.2e-10  Score=97.09  Aligned_cols=120  Identities=15%  Similarity=0.168  Sum_probs=86.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-CccceeEehhhhc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-SPADAVLLKWILH  200 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-p~~D~v~~~~vlh  200 (296)
                      .++.+|||||||+|.++..+++. +..+++++|+ |.+++.+++      ..+++.+..+|..... .+||+|+++...+
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~  236 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE  236 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence            35689999999999999887764 4568999999 888888875      3456777777644322 3599999865432


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                           ....+++++.+.|+|   ||++++......                            ..+++.+.+++. |+.+
T Consensus       237 -----~l~~ll~~~~~~Lkp---gG~li~sgi~~~----------------------------~~~~v~~~~~~~-f~~~  279 (288)
T TIGR00406       237 -----VIKELYPQFSRLVKP---GGWLILSGILET----------------------------QAQSVCDAYEQG-FTVV  279 (288)
T ss_pred             -----HHHHHHHHHHHHcCC---CcEEEEEeCcHh----------------------------HHHHHHHHHHcc-Ccee
Confidence                 345789999999999   899887653210                            345666777765 8877


Q ss_pred             EEEEcC
Q 022515          281 KIIPIL  286 (296)
Q Consensus       281 ~~~~~~  286 (296)
                      ++....
T Consensus       280 ~~~~~~  285 (288)
T TIGR00406       280 EIRQRE  285 (288)
T ss_pred             eEeccC
Confidence            765543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.11  E-value=6.6e-10  Score=91.93  Aligned_cols=102  Identities=21%  Similarity=0.304  Sum_probs=78.6

Q ss_pred             HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CC-Cc
Q 022515          120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AI-SP  189 (296)
Q Consensus       120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~-p~  189 (296)
                      ++..+.  ..++.+|||+|||+|.++..+++..|+.+++++|+ |.+++.+++     ..++++++.+|..+   .. +.
T Consensus        32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence            444444  55778999999999999999998888999999999 999988765     23679999999865   22 23


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +|.+++..      ......+++++.+.|+|   ||++++...
T Consensus       110 ~d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~~~  143 (196)
T PRK07402        110 PDRVCIEG------GRPIKEILQAVWQYLKP---GGRLVATAS  143 (196)
T ss_pred             CCEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEEee
Confidence            67665421      22345789999999999   899888764

>PRK14967 putative methyltransferase; Provisional

Probab=99.10  E-value=2.3e-09  Score=90.55  Aligned_cols=102  Identities=17%  Similarity=0.153  Sum_probs=74.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC--ccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS--PADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh  200 (296)
                      ..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++    ...+++++.+|+.+..+  .||+|++.--.+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence            455679999999999999998876 3458999999 888887665    23468899999887433  599999863211


Q ss_pred             cCCc-------------------hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          201 DWND-------------------EECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       201 ~~~d-------------------~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      .-+.                   .....+++++.+.|+|   ||+++++...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~~~~  161 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLVQSE  161 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEEEec
Confidence            1100                   1134688999999999   9998876543

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.06  E-value=7.6e-10  Score=80.57  Aligned_cols=93  Identities=23%  Similarity=0.329  Sum_probs=77.2

Q ss_pred             EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC----CccceeEehhhhccC
Q 022515          133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI----SPADAVLLKWILHDW  202 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~----p~~D~v~~~~vlh~~  202 (296)
                      +|+|+|||.|.++..+++ .+..+++++|+ +..+..+++     ...++++..+|+.+..    +++|++++..+++++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999988 67889999999 777776652     5678999999998832    259999999999875


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                       .+....+++++.+.++|   ||.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~---~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKP---GGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence             44567899999999999   8888765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.06  E-value=4e-10  Score=85.01  Aligned_cols=96  Identities=17%  Similarity=0.191  Sum_probs=76.4

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C--CC--ccceeEehhhh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A--IS--PADAVLLKWIL  199 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~--~p--~~D~v~~~~vl  199 (296)
                      .+|||+|||+|.++..+++.. ..+++++|+ |..++.++.      ..+|++++.+|+.+ .  .+  .||+|+++--.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            589999999999999999998 789999999 988888776      45789999999987 3  33  59999997655


Q ss_pred             ccCC------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          200 HDWN------DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       200 h~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +...      .+....+++++.+.|+|   ||.++++-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence            5332      11346889999999999   88887754

...

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.06  E-value=1.1e-09  Score=98.25  Aligned_cols=100  Identities=14%  Similarity=0.240  Sum_probs=78.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCC--ccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AIS--PADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p--~~D~v~~~~  197 (296)
                      .....+||||||+|.++..+++++|+..++++|+ +.++..+.+     ...++.++.+|...   .++  .+|.|++..
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            3456899999999999999999999999999999 888877654     35679999999753   344  489998754


Q ss_pred             hhccCCchH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          198 ILHDWNDEE-----CVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       198 vlh~~~d~~-----~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .. .|+...     ...+|+.++++|+|   ||.+.+...
T Consensus       201 Pd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~TD  236 (390)
T PRK14121        201 PV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELRTD  236 (390)
T ss_pred             CC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEEEE
Confidence            32 243222     14789999999999   999888654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.05  E-value=2.2e-09  Score=89.51  Aligned_cols=96  Identities=14%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCCC---------CC--ccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEA---------IS--PADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~---------~p--~~D~v~~  195 (296)
                      ++++.+|||||||+|.++..+++.. +..+++++|+.++.     ...+++++.+|+.+.         .+  .+|+|++
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S  123 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS  123 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence            4567899999999999999999986 45799999994432     234589999999872         22  4999999


Q ss_pred             hhhhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          196 KWILHDWNDEE---------CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       196 ~~vlh~~~d~~---------~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ....|....+.         ...+|+.+.+.|+|   ||.+++..
T Consensus       124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~~  165 (209)
T PRK11188        124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVKV  165 (209)
T ss_pred             CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEE
Confidence            77665543321         24689999999999   99988865

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.05  E-value=8.3e-10  Score=90.90  Aligned_cols=153  Identities=14%  Similarity=0.237  Sum_probs=97.3

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------C------------
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------D------------  172 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~------------  172 (296)
                      +..++.++..+-.+..+|||||.+|.++.++++.|....+.++|+ +..|+.|++            .            
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~  125 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFG  125 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccc
Confidence            334444443355678999999999999999999998889999999 888888765            0            


Q ss_pred             ----------------CCCeeE-------EeccCCC-CCCccceeEeh----hhhccCCchHHHHHHHHHHHhcccCCCC
Q 022515          173 ----------------LANLKY-------VGGDMFE-AISPADAVLLK----WILHDWNDEECVKILKKCKEAITSDGKK  224 (296)
Q Consensus       173 ----------------~~ri~~-------~~~D~~~-~~p~~D~v~~~----~vlh~~~d~~~~~iL~~~~~aL~p~~~g  224 (296)
                                      .+++.|       ..-||.+ ..+.||+|++-    ||==+|.|+...++|+++++.|.|   |
T Consensus       126 ~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---g  202 (288)
T KOG2899|consen  126 PISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---G  202 (288)
T ss_pred             cccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---C
Confidence                            012222       2334444 34579999874    333458899999999999999999   5


Q ss_pred             cEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc--CCcee
Q 022515          225 GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA--GFSDY  280 (296)
Q Consensus       225 G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a--Gf~~~  280 (296)
                      | ++|+|+    ..+. .+...+....... ...-.-...++.+..++.+.  ||+.+
T Consensus       203 G-iLvvEP----QpWk-sY~kaar~~e~~~-~ny~~i~lkp~~f~~~l~q~~vgle~~  253 (288)
T KOG2899|consen  203 G-ILVVEP----QPWK-SYKKAARRSEKLA-ANYFKIFLKPEDFEDWLNQIVVGLESV  253 (288)
T ss_pred             c-EEEEcC----CchH-HHHHHHHHHHHhh-cCccceecCHHHHHhhhhhhhhheeee
Confidence            5 556663    2111 0111111110000 00112234789999999988  55543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.02  E-value=3.4e-09  Score=94.67  Aligned_cols=121  Identities=16%  Similarity=0.079  Sum_probs=88.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~v  198 (296)
                      .+++.+|||+|||+|.++++.+..  +.+++++|+ +.++..+++     ....+.+..+|+.+ +.+  .+|+|++.--
T Consensus       180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            567789999999999999886654  678999999 889887664     22348899999988 543  4999998421


Q ss_pred             h-------ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHH
Q 022515          199 L-------HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKL  271 (296)
Q Consensus       199 l-------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l  271 (296)
                      .       .+...+-..++|+.+++.|+|   ||++++.-..                               ..+|.++
T Consensus       258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~~~~-------------------------------~~~~~~~  303 (329)
T TIGR01177       258 YGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYAVPT-------------------------------RIDLESL  303 (329)
T ss_pred             CcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEEEcC-------------------------------CCCHHHH
Confidence            1       111112246899999999999   9998876421                               1135577


Q ss_pred             HHhcCCceeEEEEc
Q 022515          272 FTYAGFSDYKIIPI  285 (296)
Q Consensus       272 l~~aGf~~~~~~~~  285 (296)
                      ++++|| ++..+..
T Consensus       304 ~~~~g~-i~~~~~~  316 (329)
T TIGR01177       304 AEDAFR-VVKRFEV  316 (329)
T ss_pred             HhhcCc-chheeee
Confidence            899999 8776665

This family is found exclusively in the Archaea.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.02  E-value=3.8e-09  Score=92.02  Aligned_cols=127  Identities=17%  Similarity=0.149  Sum_probs=88.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehhhhc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKWILH  200 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh  200 (296)
                      .++.+|||||||||-+++.-++.. ..+++++|+ |..++.|++      ..+++.+.  ...+ ....||+|+.+-.  
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~--  234 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANIL--  234 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES---
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCC--
Confidence            466799999999999999877763 347999999 888888776      45677653  1111 1246999987432  


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                         .+-...++..+.+.|+|   ||++++.-. ..+                           ..+++.+.+++ ||+..
T Consensus       235 ---~~vL~~l~~~~~~~l~~---~G~lIlSGI-l~~---------------------------~~~~v~~a~~~-g~~~~  279 (295)
T PF06325_consen  235 ---ADVLLELAPDIASLLKP---GGYLILSGI-LEE---------------------------QEDEVIEAYKQ-GFELV  279 (295)
T ss_dssp             ---HHHHHHHHHHCHHHEEE---EEEEEEEEE-EGG---------------------------GHHHHHHHHHT-TEEEE
T ss_pred             ---HHHHHHHHHHHHHhhCC---CCEEEEccc-cHH---------------------------HHHHHHHHHHC-CCEEE
Confidence               23456788899999999   777666443 321                           34567778877 99999


Q ss_pred             EEEEcCCcceEEEEe
Q 022515          281 KIIPILGLRSLIEVY  295 (296)
Q Consensus       281 ~~~~~~~~~~vi~~~  295 (296)
                      +.....+..+++.-+
T Consensus       280 ~~~~~~~W~~l~~~K  294 (295)
T PF06325_consen  280 EEREEGEWVALVFKK  294 (295)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEEECCEEEEEEEe
Confidence            888877776665544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.02  E-value=5.3e-09  Score=89.70  Aligned_cols=123  Identities=18%  Similarity=0.208  Sum_probs=87.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCCCC-----CccceeEehhh---
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFEAI-----SPADAVLLKWI---  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~~~-----p~~D~v~~~~v---  198 (296)
                      +..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++  ...+++++.+|+++..     +.||+|+++=-   
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP  165 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence            345899999999999999999999999999999 999988876  2233688999988732     24999987421   


Q ss_pred             ---hccCCch------------------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515          199 ---LHDWNDE------------------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL  257 (296)
Q Consensus       199 ---lh~~~d~------------------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (296)
                         ++..+++                  -...+++.+.+.|+|   ||++++.-. . +                     
T Consensus       166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~~~-~-~---------------------  219 (251)
T TIGR03704       166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVETS-E-R---------------------  219 (251)
T ss_pred             chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC-c-c---------------------
Confidence               1111111                  124788888899999   888775421 1 0                     


Q ss_pred             cCccccCHHHHHHHHHhcCCceeEEEE
Q 022515          258 LTGTERDEKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~  284 (296)
                            ..+++.+++++.||+...+..
T Consensus       220 ------~~~~v~~~l~~~g~~~~~~~~  240 (251)
T TIGR03704       220 ------QAPLAVEAFARAGLIARVASS  240 (251)
T ss_pred             ------hHHHHHHHHHHCCCCceeeEc
Confidence                  234677888889987654443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=6e-09  Score=90.02  Aligned_cols=129  Identities=21%  Similarity=0.321  Sum_probs=90.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCee----EEeccCCC-CC-CccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLK----YVGGDMFE-AI-SPADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~----~~~~D~~~-~~-p~~D~v~~~~v  198 (296)
                      ..++.+|||||||+|-++++.++.- ..+++++|+ |..++.++.  ..+.++    ....+... +. ..||+|+++ +
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN-I  237 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN-I  237 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh-h
Confidence            4588999999999999999988873 346999999 888877765  233333    33333333 22 259999884 3


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                      |   .+ -..++...+.+.++|   ||++++.-. ..+                           ..+.+.+.+.++||+
T Consensus       238 L---A~-vl~~La~~~~~~lkp---gg~lIlSGI-l~~---------------------------q~~~V~~a~~~~gf~  282 (300)
T COG2264         238 L---AE-VLVELAPDIKRLLKP---GGRLILSGI-LED---------------------------QAESVAEAYEQAGFE  282 (300)
T ss_pred             h---HH-HHHHHHHHHHHHcCC---CceEEEEee-hHh---------------------------HHHHHHHHHHhCCCe
Confidence            4   22 345888999999999   787766542 211                           245677889999999


Q ss_pred             eeEEEEcCCcceEEE
Q 022515          279 DYKIIPILGLRSLIE  293 (296)
Q Consensus       279 ~~~~~~~~~~~~vi~  293 (296)
                      ++++..-....++.-
T Consensus       283 v~~~~~~~eW~~i~~  297 (300)
T COG2264         283 VVEVLEREEWVAIVG  297 (300)
T ss_pred             EeEEEecCCEEEEEE
Confidence            999888776665543

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.97  E-value=5.2e-09  Score=87.62  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=74.4

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---Cc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---SP  189 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p~  189 (296)
                      .++..+.  ..+..+|||||||+|.++..+++..  .+++++|. +++++.+++     ...+++++.+|..+..   ..
T Consensus        69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  144 (212)
T PRK00312         69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP  144 (212)
T ss_pred             HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence            3344444  5677899999999999998777764  37999999 888887765     2356999999987743   25


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ||+|++...++++        .+.+.+.|+|   ||++++.-
T Consensus       145 fD~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~~  175 (212)
T PRK00312        145 FDRILVTAAAPEI--------PRALLEQLKE---GGILVAPV  175 (212)
T ss_pred             cCEEEEccCchhh--------hHHHHHhcCC---CcEEEEEE
Confidence            9999998766543        3456788999   89888754

>PRK00811 spermidine synthase; Provisional

Probab=98.94  E-value=3.4e-09  Score=92.53  Aligned_cols=98  Identities=19%  Similarity=0.244  Sum_probs=75.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCC--C--CCcccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFE--A--ISPADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~--~--~p~~D~v  193 (296)
                      +++.+||+||||+|..+..+++..+..+++++|+ +.+++.|++          ..+|++++.+|..+  .  ...||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            4568999999999999999997655568999999 999998876          15789999999876  2  2259999


Q ss_pred             EehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEE
Q 022515          194 LLKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       194 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ++...-+..+...  ..++++.+++.|+|   ||.+++
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~  189 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVA  189 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence            9864333222221  25789999999999   787665

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=1.5e-08  Score=84.78  Aligned_cols=120  Identities=18%  Similarity=0.240  Sum_probs=96.1

Q ss_pred             HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHH-HCCCCeEEeccc-hhHhhccCC------
Q 022515          104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAK-AFPKLECTCFDL-PHVVNGLDS------  171 (296)
Q Consensus       104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~------  171 (296)
                      .|...|....+.+    +..++....  ..++.+|+|.|-|+|.++..|+. -.|.-+++.+|. ++..+.|++      
T Consensus        66 d~~~~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~  143 (256)
T COG2519          66 DYLLSMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG  143 (256)
T ss_pred             HHHHhCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc
Confidence            3444466555543    345666666  88999999999999999999997 557789999999 899988876      


Q ss_pred             CCCCeeEEeccCCCC-CC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          172 DLANLKYVGGDMFEA-IS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       172 ~~~ri~~~~~D~~~~-~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      ..+++++..+|+.+. .+ .+|++++     |.|++-  +.+.++.++|+|   ||.+++.-++.+
T Consensus       144 l~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y~P~ve  199 (256)
T COG2519         144 LGDRVTLKLGDVREGIDEEDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVYSPTVE  199 (256)
T ss_pred             cccceEEEeccccccccccccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEEcCCHH
Confidence            578899999999983 33 5999999     677764  789999999999   999988776543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=2.3e-08  Score=87.00  Aligned_cols=130  Identities=23%  Similarity=0.359  Sum_probs=92.5

Q ss_pred             EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-ccceeEeh------h--
Q 022515          133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-PADAVLLK------W--  197 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-~~D~v~~~------~--  197 (296)
                      +|||+|||+|..++.++.++|+++++++|+ |..++.|++     ...++.++.+|.+++.+ .||+|+++      .  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~  192 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP  192 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence            899999999999999999999999999999 999988876     22777788889999665 59998873      1  


Q ss_pred             -----hhccCC--------c--hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccc
Q 022515          198 -----ILHDWN--------D--EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTE  262 (296)
Q Consensus       198 -----vlh~~~--------d--~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  262 (296)
                           +..+-|        |  +-..+++..+.+.|+|    |.++++|.-..                           
T Consensus       193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~----~g~l~le~g~~---------------------------  241 (280)
T COG2890         193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP----GGVLILEIGLT---------------------------  241 (280)
T ss_pred             ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC----CcEEEEEECCC---------------------------
Confidence                 111111        1  1345788888899998    44555553211                           


Q ss_pred             cCHHHHHHHHHhcC-CceeEEEEc-CCcceEEEE
Q 022515          263 RDEKEWTKLFTYAG-FSDYKIIPI-LGLRSLIEV  294 (296)
Q Consensus       263 rt~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi~~  294 (296)
                       ..+++.+++.+.| |..+...+- .+...++.+
T Consensus       242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~  274 (280)
T COG2890         242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA  274 (280)
T ss_pred             -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence             3567889999999 665555544 344444443

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.89  E-value=1e-08  Score=84.15  Aligned_cols=94  Identities=19%  Similarity=0.354  Sum_probs=69.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC---------CC--ccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA---------IS--PADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~---------~p--~~D~v~  194 (296)
                      ..++.+|||+|||+|.++..+++++ +..+++++|+ +.+    .  ..+++++.+|+.+.         .+  .+|+|+
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~--~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~  103 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P--IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM  103 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c--CCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence            4677899999999999999999887 5678999999 543    1  24688888898752         22  499999


Q ss_pred             ehhhhc---cCCc------hHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          195 LKWILH---DWND------EECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       195 ~~~vlh---~~~d------~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +....|   .|..      +....+|+++.+.|+|   ||++++.
T Consensus       104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~  145 (188)
T TIGR00438       104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK  145 (188)
T ss_pred             cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence            854322   1111      1235789999999999   8988875

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.89  E-value=3e-08  Score=80.69  Aligned_cols=159  Identities=18%  Similarity=0.214  Sum_probs=93.3

Q ss_pred             chhhcccCchHHHHHHHHHHcc-chh---chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHh
Q 022515           91 LWEYAGDEPKLNNFFNEAMASD-AWL---ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVV  166 (296)
Q Consensus        91 ~~~~~~~~~~~~~~f~~~m~~~-~~~---~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~  166 (296)
                      -++.+.++|+....|+.....- .+|   -.+.+++.+.. .++...|.|+|||.+.++..+..   ..++.-+|+-.  
T Consensus        30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva--  103 (219)
T PF05148_consen   30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA--  103 (219)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S------EEEEESS---
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC--
Confidence            3455667787766665543322 222   24455665551 34457999999999999966532   35788888722  


Q ss_pred             hccCCCCCCeeEEeccCCC-CCCc--cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCch
Q 022515          167 NGLDSDLANLKYVGGDMFE-AISP--ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS  243 (296)
Q Consensus       167 ~~a~~~~~ri~~~~~D~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~  243 (296)
                           ..+  .+++.|+.+ |.+.  .|++++.-.|-.-   +...+++++.|+|||   ||.|.|.|....        
T Consensus       104 -----~n~--~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~---~G~L~IAEV~SR--------  162 (219)
T PF05148_consen  104 -----PNP--RVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKP---GGILKIAEVKSR--------  162 (219)
T ss_dssp             -----SST--TEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEE---EEEEEEEEEGGG--------
T ss_pred             -----CCC--CEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheecc---CcEEEEEEeccc--------
Confidence                 122  466789977 7663  8999988777432   245789999999999   999999996331        


Q ss_pred             hhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEE
Q 022515          244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEV  294 (296)
Q Consensus       244 ~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~  294 (296)
                           .-             +.+++.+.++..||+...........-+++.
T Consensus       163 -----f~-------------~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F  195 (219)
T PF05148_consen  163 -----FE-------------NVKQFIKALKKLGFKLKSKDESNKHFVLFEF  195 (219)
T ss_dssp             ------S--------------HHHHHHHHHCTTEEEEEEE--STTEEEEEE
T ss_pred             -----Cc-------------CHHHHHHHHHHCCCeEEecccCCCeEEEEEE
Confidence                 10             5678889999999998875444444444443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK01581 speE spermidine synthase; Validated

Probab=98.88  E-value=7.9e-09  Score=91.59  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=75.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------CCCCeeEEeccCCC---CC-Cccc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFE---AI-SPAD  191 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~---~~-p~~D  191 (296)
                      .++.+||+||||+|..+..+++..+..+++++|+ |.|++.|++            ..+|++++.+|..+   .. ..||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            4567999999999999999988655679999999 999998874            25799999999886   22 2599


Q ss_pred             eeEehhhhc---cCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          192 AVLLKWILH---DWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       192 ~v~~~~vlh---~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +|++...-.   ....-...++++.+++.|+|   ||.+++.
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q  267 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ  267 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            999963100   00111235789999999999   8877664

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.87  E-value=3.2e-09  Score=87.24  Aligned_cols=99  Identities=9%  Similarity=0.195  Sum_probs=70.9

Q ss_pred             CCCEEEEecCCchHHH----HHHHHHC----C-CCeEEeccc-hhHhhccCC----------------------------
Q 022515          130 GLNSLVDVGGGIGTAA----KAIAKAF----P-KLECTCFDL-PHVVNGLDS----------------------------  171 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~----~~l~~~~----p-~~~~~~~D~-~~~~~~a~~----------------------------  171 (296)
                      +.-+|...||++|.=.    +.+.+..    + ..++++.|+ +.+++.|++                            
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            5679999999999533    3333311    2 468899999 899988765                            


Q ss_pred             -----CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          172 -----DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       172 -----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                           ...+|+|..+|..+ +.+  ++|+|+|++||-+++++...+++++++++|+|   ||.|++-.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG~  175 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLGH  175 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-T
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEec
Confidence                 13679999999999 322  59999999999999999999999999999999   88887764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.86  E-value=5.5e-09  Score=85.48  Aligned_cols=146  Identities=14%  Similarity=0.107  Sum_probs=98.3

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEe-ccCCC--CCCccc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVG-GDMFE--AISPAD  191 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~-~D~~~--~~p~~D  191 (296)
                      .+++...+  ..+..++||+|||||-....+...-  -+.+++|+ ..|++.|.+  ..+....-. .+|..  +...+|
T Consensus       115 ~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D  190 (287)
T COG4976         115 AEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD  190 (287)
T ss_pred             HHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence            34444444  4457999999999999998887763  37889999 899999875  233222211 12443  233599


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHH
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKL  271 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l  271 (296)
                      +|....||-.+..-+  .++--+...|+|   ||.+.+.-...+..... ...+.            .-..++..-++++
T Consensus       191 Li~AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~l~~~~~f-~l~ps------------~RyAH~~~YVr~~  252 (287)
T COG4976         191 LIVAADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVETLPDDGGF-VLGPS------------QRYAHSESYVRAL  252 (287)
T ss_pred             chhhhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecccCCCCCe-ecchh------------hhhccchHHHHHH
Confidence            999999998877654  789999999999   77665554433332110 00000            0112366778999


Q ss_pred             HHhcCCceeEEEEc
Q 022515          272 FTYAGFSDYKIIPI  285 (296)
Q Consensus       272 l~~aGf~~~~~~~~  285 (296)
                      ++..||+++.+.++
T Consensus       253 l~~~Gl~~i~~~~t  266 (287)
T COG4976         253 LAASGLEVIAIEDT  266 (287)
T ss_pred             HHhcCceEEEeecc
Confidence            99999999998776

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.85  E-value=2e-08  Score=88.86  Aligned_cols=100  Identities=14%  Similarity=0.281  Sum_probs=75.4

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p  188 (296)
                      .+++.++  .+++.+|||||||+|.++..+++..+. .+++++|. +++++.|++     ..+++.++.+|..+..   .
T Consensus        71 ~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~  148 (322)
T PRK13943         71 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA  148 (322)
T ss_pred             HHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence            3444444  567789999999999999999998763 47999999 898887765     3467999999987632   3


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .||+|++...+++.        ...+.+.|+|   ||++++..
T Consensus       149 ~fD~Ii~~~g~~~i--------p~~~~~~Lkp---gG~Lvv~~  180 (322)
T PRK13943        149 PYDVIFVTVGVDEV--------PETWFTQLKE---GGRVIVPI  180 (322)
T ss_pred             CccEEEECCchHHh--------HHHHHHhcCC---CCEEEEEe
Confidence            59999997655433        3345678999   89988754

>PLN02366 spermidine synthase

Probab=98.84  E-value=1.6e-08  Score=88.86  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=73.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CC-C-cccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AI-S-PADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~-p-~~D~v  193 (296)
                      +++.+||+||||.|..+.++++..+..+++++|+ +.+++.+++         ..+|++++.+|..+   .. + .||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4678999999999999999986533468999999 889998876         14699999999754   23 2 59999


Q ss_pred             EehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEE
Q 022515          194 LLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       194 ~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ++...-+..+..  -..++++.++++|+|   ||.+++
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~  204 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCT  204 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEE
Confidence            985433222211  135789999999999   887654

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.83  E-value=3.6e-08  Score=84.55  Aligned_cols=99  Identities=11%  Similarity=0.207  Sum_probs=82.1

Q ss_pred             CCCEEEEecCCch----HHHHHHHHHCC-----CCeEEeccc-hhHhhccCC----------------------------
Q 022515          130 GLNSLVDVGGGIG----TAAKAIAKAFP-----KLECTCFDL-PHVVNGLDS----------------------------  171 (296)
Q Consensus       130 ~~~~vLDvGgG~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~----------------------------  171 (296)
                      +.-+|.-.||+||    .+++.+.+.+|     ..++++.|+ ..+++.|++                            
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            4679999999999    45566666775     478999999 889988765                            


Q ss_pred             ------CCCCeeEEeccCCCC--CC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          172 ------DLANLKYVGGDMFEA--IS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       172 ------~~~ri~~~~~D~~~~--~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                            ....|.|..+|.+++  .+ +||+|+|.+||-.++.+.-.+++++++..|+|   ||.|++-.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEcc
Confidence                  124588999999984  34 49999999999999998889999999999999   88888865

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.83  E-value=1.5e-08  Score=81.78  Aligned_cols=82  Identities=13%  Similarity=0.312  Sum_probs=63.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc--c
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP--A  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~--~  190 (296)
                      ..+++.++  ..+..+|||||||+|.++..++++  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +.+.  +
T Consensus         3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence            34555555  566789999999999999999988  578999999 888888765   34689999999998 5553  7


Q ss_pred             ceeEehhhhccCCc
Q 022515          191 DAVLLKWILHDWND  204 (296)
Q Consensus       191 D~v~~~~vlh~~~d  204 (296)
                      |.|+.+ .-++...
T Consensus        79 d~vi~n-~Py~~~~   91 (169)
T smart00650       79 YKVVGN-LPYNIST   91 (169)
T ss_pred             CEEEEC-CCcccHH
Confidence            888764 3333433

>TIGR00417 speE spermidine synthase

Probab=98.83  E-value=1.4e-08  Score=88.24  Aligned_cols=99  Identities=16%  Similarity=0.169  Sum_probs=75.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---C-CCccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---A-ISPADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~-~p~~D~v~  194 (296)
                      +++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++         ...|++++.+|.++   . ...||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            3456999999999999999988766678999999 899888775         14688999888765   1 23599999


Q ss_pred             ehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 022515          195 LKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       195 ~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +...-+.-+...  ..++++++++.|+|   ||.+++.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~  185 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ  185 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence            865432222222  35789999999999   8887765

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.82  E-value=2.3e-08  Score=84.96  Aligned_cols=142  Identities=20%  Similarity=0.337  Sum_probs=83.0

Q ss_pred             CCCEEEEecCCchH--HHHHH-HHHCCCCeEEeccc-hhHhhccCC---CCC--CeeEEeccCCCC---C--C---c-cc
Q 022515          130 GLNSLVDVGGGIGT--AAKAI-AKAFPKLECTCFDL-PHVVNGLDS---DLA--NLKYVGGDMFEA---I--S---P-AD  191 (296)
Q Consensus       130 ~~~~vLDvGgG~G~--~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~---~~~--ri~~~~~D~~~~---~--p---~-~D  191 (296)
                      +...+||||||--.  ..-++ .+..|+.+++.+|. |-++..++.   ..+  +..++.+|+.++   +  |   . .|
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            77899999999652  22333 44679999999999 889988876   233  489999999983   1  2   1 33


Q ss_pred             -----eeEehhhhccCCc-hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCH
Q 022515          192 -----AVLLKWILHDWND-EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDE  265 (296)
Q Consensus       192 -----~v~~~~vlh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~  265 (296)
                           .+++..+||+.+| ++...+++.++++|.|   |+.|.|.....+..    +. .......++.........||.
T Consensus       148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~ish~t~d~~----p~-~~~~~~~~~~~~~~~~~~Rs~  219 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAISHATDDGA----PE-RAEALEAVYAQAGSPGRPRSR  219 (267)
T ss_dssp             TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEEEEB-TTS----HH-HHHHHHHHHHHCCS----B-H
T ss_pred             CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEEecCCCCC----HH-HHHHHHHHHHcCCCCceecCH
Confidence                 6888999999987 6788999999999999   88888888765322    11 112222333222345678899


Q ss_pred             HHHHHHHHhcCCceeE
Q 022515          266 KEWTKLFTYAGFSDYK  281 (296)
Q Consensus       266 ~e~~~ll~~aGf~~~~  281 (296)
                      +|+.++|.  ||+.++
T Consensus       220 ~ei~~~f~--g~elve  233 (267)
T PF04672_consen  220 EEIAAFFD--GLELVE  233 (267)
T ss_dssp             HHHHHCCT--TSEE-T
T ss_pred             HHHHHHcC--CCccCC
Confidence            99999988  777543

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK03612 spermidine synthase; Provisional

Probab=98.81  E-value=3.3e-08  Score=93.41  Aligned_cols=98  Identities=19%  Similarity=0.316  Sum_probs=74.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------------CCCCeeEEeccCCC---CCC-cc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFE---AIS-PA  190 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~---~~p-~~  190 (296)
                      +++++|||||||+|..+.++++ +|. .+++++|+ |++++.+++            ..+|++++.+|.++   ..+ .|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4568999999999999999987 565 79999999 999998875            13689999999876   223 59


Q ss_pred             ceeEehhhhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          191 DAVLLKWILHDWNDE---ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       191 D~v~~~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      |+|++...-...+..   -..++++++++.|+|   ||.+++.
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~  414 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ  414 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence            999996432211111   124689999999999   7876654

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.80  E-value=1.8e-08  Score=87.50  Aligned_cols=99  Identities=13%  Similarity=0.223  Sum_probs=78.4

Q ss_pred             CCCEEEEecCCchHH----HHHHHHHCC----CCeEEeccc-hhHhhccCC-----------------------------
Q 022515          130 GLNSLVDVGGGIGTA----AKAIAKAFP----KLECTCFDL-PHVVNGLDS-----------------------------  171 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~----~~~l~~~~p----~~~~~~~D~-~~~~~~a~~-----------------------------  171 (296)
                      +.-+|...||+||.=    ++.+.+..+    +.++++.|+ +.+++.|++                             
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            347999999999953    333444332    468999999 899988765                             


Q ss_pred             -------CCCCeeEEeccCCC-CCC---ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          172 -------DLANLKYVGGDMFE-AIS---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       172 -------~~~ri~~~~~D~~~-~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                             ...+|+|..+|..+ +.|   .||+|+|.+++.+++++...+++++++++|+|   ||.|++-.
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG~  262 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAGH  262 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEeC
Confidence                   11567899999998 443   59999999999999999889999999999999   88876654

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.79  E-value=6.5e-08  Score=82.12  Aligned_cols=142  Identities=18%  Similarity=0.267  Sum_probs=98.8

Q ss_pred             HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC------
Q 022515          104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS------  171 (296)
Q Consensus       104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------  171 (296)
                      .|...|...++.+    +..++..++  ..++.+||+.|.|+|.++..|++. .|.-+++.+|. ++-++.|++      
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g   89 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG   89 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC
Confidence            3455555555543    235566666  889999999999999999999974 58889999999 888888876      


Q ss_pred             CCCCeeEEeccCCC-CC-----CccceeEehhhhccCCchHHHHHHHHHHHhc-ccCCCCcEEEEEeeeeCCCCCCCchh
Q 022515          172 DLANLKYVGGDMFE-AI-----SPADAVLLKWILHDWNDEECVKILKKCKEAI-TSDGKKGKVIIIDMIRENKKGDDKSI  244 (296)
Q Consensus       172 ~~~ri~~~~~D~~~-~~-----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL-~p~~~gG~lli~e~~~~~~~~~~~~~  244 (296)
                      ..+++++..+|+.+ .+     ..+|.|++     |+|++-  ..+.++.++| +|   ||++.+.-++...        
T Consensus        90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~fsP~ieQ--------  151 (247)
T PF08704_consen   90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCFSPCIEQ--------  151 (247)
T ss_dssp             CCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEEESSHHH--------
T ss_pred             CCCCceeEecceecccccccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEECCCHHH--------
Confidence            56799999999975 33     24899998     778775  6799999999 88   9999887654321        


Q ss_pred             hhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          245 ETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       245 ~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                                          .....+.|++.||..+++..+
T Consensus       152 --------------------v~~~~~~L~~~gf~~i~~~Ev  172 (247)
T PF08704_consen  152 --------------------VQKTVEALREHGFTDIETVEV  172 (247)
T ss_dssp             --------------------HHHHHHHHHHTTEEEEEEEEE
T ss_pred             --------------------HHHHHHHHHHCCCeeeEEEEE
Confidence                                223345667789987766543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.78  E-value=3.9e-08  Score=83.51  Aligned_cols=99  Identities=12%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---------CCcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---------ISPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---------~p~~  190 (296)
                      ..+..+|||||||+|..+..+++..| +.+++.+|. ++.++.|++      ..++|+++.+|..+.         .+.|
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            45678999999999999999998765 679999999 888888776      468999999998762         1359


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      |+|++.     -+.+.-..++..+.+.|+|   ||.|++-+..+
T Consensus       146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG~ii~dn~l~  181 (234)
T PLN02781        146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GGIIAFDNTLW  181 (234)
T ss_pred             CEEEEC-----CCHHHHHHHHHHHHHhcCC---CeEEEEEcCCc
Confidence            999884     2334445789999999999   77655444333

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.77  E-value=1.7e-08  Score=83.34  Aligned_cols=97  Identities=19%  Similarity=0.279  Sum_probs=70.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-----eeEEeccCCCCC--C-ccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-----LKYVGGDMFEAI--S-PADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-----i~~~~~D~~~~~--p-~~D~v~~~~vl  199 (296)
                      ..+.++|||||+|..++.++..|.  ++++.|+ +.|++.+++ ...+     .++..-++.+-.  + ..|+|++..++
T Consensus        33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence            445899999999988888888765  7899999 999999986 1111     111122222211  2 48999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      |.++-+   ++.+.++++|++  +||.+.+....
T Consensus       111 HWFdle---~fy~~~~rvLRk--~Gg~iavW~Y~  139 (261)
T KOG3010|consen  111 HWFDLE---RFYKEAYRVLRK--DGGLIAVWNYN  139 (261)
T ss_pred             HhhchH---HHHHHHHHHcCC--CCCEEEEEEcc
Confidence            988765   689999999998  36777776654

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.77  E-value=1.7e-08  Score=83.85  Aligned_cols=102  Identities=17%  Similarity=0.270  Sum_probs=75.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--  188 (296)
                      ..+++.+.  ++++.+|||||||+|.++.-++... +.-+++.+|. +..++.|++     ...++.++.+|.....+  
T Consensus        62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            35566666  7889999999999999999988875 3447899999 999998877     46689999999887443  


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                       +||.|++.......|.        .+.+.|++   ||+|++.-.
T Consensus       140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~pi~  173 (209)
T PF01135_consen  140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAPIG  173 (209)
T ss_dssp             -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEEES
T ss_pred             CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEEEc
Confidence             4999999877653332        35555899   999887543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=6.1e-08  Score=79.30  Aligned_cols=100  Identities=13%  Similarity=0.224  Sum_probs=79.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC---
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS---  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p---  188 (296)
                      -.++..+.  ++++.+||+||||+|..+.-|++.--  +++.+|+ ++.++.|++     ...+|.++.+|-..-+|   
T Consensus        62 A~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a  137 (209)
T COG2518          62 ARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA  137 (209)
T ss_pred             HHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence            34555556  78899999999999999998888753  8999999 898988876     35569999999998544   


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +||.|+..-..-..|+        .+.+-|+|   ||++++-..
T Consensus       138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~---gGrlv~PvG  170 (209)
T COG2518         138 PYDRIIVTAAAPEVPE--------ALLDQLKP---GGRLVIPVG  170 (209)
T ss_pred             CcCEEEEeeccCCCCH--------HHHHhccc---CCEEEEEEc
Confidence            5999999776654443        34455899   999998776

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.73  E-value=8e-08  Score=88.85  Aligned_cols=104  Identities=14%  Similarity=0.189  Sum_probs=78.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC---C-C-ccceeEe--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA---I-S-PADAVLL--  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~---~-p-~~D~v~~--  195 (296)
                      ..++.+|||+|||+|..+..+++..++.+++++|+ +.+++.+++    ..-+++++.+|..+.   . + .||.|++  
T Consensus       242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  321 (427)
T PRK10901        242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA  321 (427)
T ss_pred             CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence            45678999999999999999999988789999999 888888765    333578999999862   1 2 4999984  


Q ss_pred             --hh--hhcc-------CCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          196 --KW--ILHD-------WNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 --~~--vlh~-------~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                        +.  ++..       ...++       ..++|+++.+.|+|   ||++++.....
T Consensus       322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~  375 (427)
T PRK10901        322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYATCSI  375 (427)
T ss_pred             CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence              21  1211       11111       24789999999999   99988877544

>PLN02672 methionine S-methyltransferase

Probab=98.73  E-value=8.4e-08  Score=96.15  Aligned_cols=124  Identities=19%  Similarity=0.214  Sum_probs=88.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---C------------------CCCeeEEeccCCCCCC
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---D------------------LANLKYVGGDMFEAIS  188 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------------------~~ri~~~~~D~~~~~p  188 (296)
                      +.+|||+|||+|.+++.+++++|..+++++|+ |.+++.|++   .                  .+|++|+.+|+++..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999999999999999999 999987754   1                  2589999999998442


Q ss_pred             ----ccceeEehh--h------------h--------ccC----C------ch----HHHHHHHHHHHhcccCCCCcEEE
Q 022515          189 ----PADAVLLKW--I------------L--------HDW----N------DE----ECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       189 ----~~D~v~~~~--v------------l--------h~~----~------d~----~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                          .||+|+++=  |            .        |..    +      ++    -..++++.+.+.|+|   ||. +
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~p---gG~-l  274 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKP---MGI-M  274 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccC---CCE-E
Confidence                489987731  1            1        100    0      01    115677778888888   664 4


Q ss_pred             EEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH-HHHHhcCCceeEEEEcC
Q 022515          229 IIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT-KLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       229 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~-~ll~~aGf~~~~~~~~~  286 (296)
                      ++|.-..                            ..+.+. +++++.||+.++++...
T Consensus       275 ~lEiG~~----------------------------q~~~v~~~l~~~~gf~~~~~~~~~  305 (1082)
T PLN02672        275 IFNMGGR----------------------------PGQAVCERLFERRGFRITKLWQTK  305 (1082)
T ss_pred             EEEECcc----------------------------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence            4554211                            234666 58889999988877653

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.71  E-value=1.6e-07  Score=78.96  Aligned_cols=140  Identities=16%  Similarity=0.223  Sum_probs=90.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC-ccceeEehhhhccCCchHH
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS-PADAVLLKWILHDWNDEEC  207 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~d~~~  207 (296)
                      ...++||||.|.|..+..++..|.+  +++-+. +.|...-++  ..++++..|-....+ .||+|.|.++|-...++. 
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~--kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~-  168 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSK--KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPL-  168 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHh--CCCeEEehhhhhccCCceEEEeehhhhhccCCHH-
Confidence            4578999999999999999999875  555676 777665542  334444433333222 599999999996555554 


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEeeeeCC----C-C--CCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          208 VKILKKCKEAITSDGKKGKVIIIDMIREN----K-K--GDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       208 ~~iL~~~~~aL~p~~~gG~lli~e~~~~~----~-~--~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                       .+|+.++++|+|   +|++++.-...-.    . .  ..+|.    ..+++    ....-+-....+.+.|+.+||++.
T Consensus       169 -~LL~~i~~~l~p---~G~lilAvVlP~~pyVE~~~g~~~~P~----e~l~~----~g~~~E~~v~~l~~v~~p~GF~v~  236 (265)
T PF05219_consen  169 -TLLRDIRRALKP---NGRLILAVVLPFRPYVEFGGGKSNRPS----ELLPV----KGATFEEQVSSLVNVFEPAGFEVE  236 (265)
T ss_pred             -HHHHHHHHHhCC---CCEEEEEEEecccccEEcCCCCCCCch----hhcCC----CCCcHHHHHHHHHHHHHhcCCEEE
Confidence             889999999999   7887765422110    0 0  10110    01111    011112234455588999999999


Q ss_pred             EEEEcC
Q 022515          281 KIIPIL  286 (296)
Q Consensus       281 ~~~~~~  286 (296)
                      +....|
T Consensus       237 ~~tr~P  242 (265)
T PF05219_consen  237 RWTRLP  242 (265)
T ss_pred             EEeccC
Confidence            998875

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.71  E-value=7.5e-08  Score=89.07  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=80.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC----CccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI----SPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~----p~~D~v~~  195 (296)
                      ..++.+|||+|||+|..+.++++..+..+++++|+ +.+++.+++      ...++.+..+|... +.    ..||.|++
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            45678999999999999999999888789999999 888887765      12234557777765 22    24999986


Q ss_pred             ------hhhhccCCch--------------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          196 ------KWILHDWNDE--------------ECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       196 ------~~vlh~~~d~--------------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                            ..+++..|+-              ...++|+++.+.|+|   ||+++........
T Consensus       316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvystcs~~~  373 (426)
T TIGR00563       316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYATCSVLP  373 (426)
T ss_pred             cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCCh
Confidence                  2456654441              125799999999999   9999988766644

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PHA03412 putative methyltransferase; Provisional

Probab=98.70  E-value=1.4e-07  Score=78.96  Aligned_cols=93  Identities=17%  Similarity=0.231  Sum_probs=70.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHC---CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEehhhhccCC-
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAF---PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLLKWILHDWN-  203 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~-  203 (296)
                      ..+|||+|||+|.++..++++.   +..+++++|+ +.+++.|++...++.+..+|+.. +.. .||+|+++=-.+... 
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~  129 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT  129 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence            5799999999999999999875   4678999999 99999998745679999999987 433 599999854333211 


Q ss_pred             -c--------hHHHHHHHHHHHhcccCCCCcEE
Q 022515          204 -D--------EECVKILKKCKEAITSDGKKGKV  227 (296)
Q Consensus       204 -d--------~~~~~iL~~~~~aL~p~~~gG~l  227 (296)
                       +        .-...+++++.+.++|    |.+
T Consensus       130 ~d~~ar~~g~~~~~~li~~A~~Ll~~----G~~  158 (241)
T PHA03412        130 SDFKGKYTGAEFEYKVIERASQIARQ----GTF  158 (241)
T ss_pred             cccCCcccccHHHHHHHHHHHHHcCC----CEE
Confidence             1        1134688899987776    665

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.68  E-value=8.8e-08  Score=78.93  Aligned_cols=97  Identities=16%  Similarity=0.319  Sum_probs=71.0

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC----CC--ccceeEehhhh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA----IS--PADAVLLKWIL  199 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~----~p--~~D~v~~~~vl  199 (296)
                      ..+||||||.|.++.++++.+|+..++++|+ ...+..+.+     ...++.++.+|...-    ++  ..|-|++.+-=
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            3899999999999999999999999999999 777766543     689999999998871    22  36666663211


Q ss_pred             ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          200 HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       200 h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                       -|+...       ...+|+.+++.|+|   ||.|.+...
T Consensus        99 -PWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~TD  134 (195)
T PF02390_consen   99 -PWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFATD  134 (195)
T ss_dssp             ----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEEES
T ss_pred             -CCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEEeC
Confidence             122211       25789999999999   998877653

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.65  E-value=1.9e-07  Score=86.82  Aligned_cols=105  Identities=17%  Similarity=0.258  Sum_probs=77.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-ccceeEeh--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-PADAVLLK--  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-~~D~v~~~--  196 (296)
                      ..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++     ..++|+++.+|..+ ..+ .||+|++.  
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence            44668999999999999999888654 468999999 899887765     23579999999887 322 49999862  


Q ss_pred             ----hhh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          197 ----WIL-------HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       197 ----~vl-------h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                          .++       ..+..++       -.++|+++.+.|+|   ||+++.......
T Consensus       328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvystcs~~  381 (445)
T PRK14904        328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYATCSIE  381 (445)
T ss_pred             CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCCC
Confidence                111       1222222       23689999999999   899888775554

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.64  E-value=2.2e-07  Score=86.47  Aligned_cols=104  Identities=15%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC---CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA---IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~---~p-~~D~v~~~  196 (296)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++     ..++++++.+|+.+.   .+ .||+|++.
T Consensus       248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence            4567899999999999999999986 6789999999 888877765     234599999998762   33 59999873


Q ss_pred             h------hhccCC-------chH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          197 W------ILHDWN-------DEE-------CVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       197 ~------vlh~~~-------d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      -      ++.+.|       ..+       ..++|+++.+.|+|   ||+++......
T Consensus       328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvystcs~  382 (444)
T PRK14902        328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYSTCTI  382 (444)
T ss_pred             CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEcCCC
Confidence            2      111111       111       24689999999999   99987655433

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.62  E-value=4.7e-07  Score=84.21  Aligned_cols=120  Identities=18%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC-----C--CccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA-----I--SPADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~-----~--p~~D~v~  194 (296)
                      ..++.+|||+|||+|.++..+++..  .+++++|. +++++.|++     ..++++++.+|+.+.     .  ..||+|+
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi  372 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL  372 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence            4566799999999999999999885  58999999 999988876     235799999998652     2  1489998


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY  274 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~  274 (296)
                      +     +-|......+++.+.+ ++|   ++.++|.-.  +.          ..             .|+   + ..|.+
T Consensus       373 ~-----dPPr~g~~~~~~~l~~-~~~---~~ivyvSCn--p~----------tl-------------aRD---l-~~L~~  414 (443)
T PRK13168        373 L-----DPPRAGAAEVMQALAK-LGP---KRIVYVSCN--PA----------TL-------------ARD---A-GVLVE  414 (443)
T ss_pred             E-----CcCCcChHHHHHHHHh-cCC---CeEEEEEeC--hH----------Hh-------------hcc---H-HHHhh
Confidence            7     3343333455666655 577   555555431  10          00             112   2 23457


Q ss_pred             cCCceeEEEEcCC
Q 022515          275 AGFSDYKIIPILG  287 (296)
Q Consensus       275 aGf~~~~~~~~~~  287 (296)
                      .||++.++.++.-
T Consensus       415 ~gY~l~~i~~~Dm  427 (443)
T PRK13168        415 AGYRLKRAGMLDM  427 (443)
T ss_pred             CCcEEEEEEEecc
Confidence            8999999998753

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.61  E-value=2.5e-07  Score=85.76  Aligned_cols=104  Identities=17%  Similarity=0.180  Sum_probs=79.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C----C--Ccccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A----I--SPADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~----~--p~~D~v  193 (296)
                      ..++.+|||+|||+|..+.++++... ..+++++|+ +.+++.+++     ...+|+++.+|..+ +    .  ..||.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            45678999999999999999998754 468999999 888887765     33569999999876 3    1  149999


Q ss_pred             Eeh------hhhccCCch-------H-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          194 LLK------WILHDWNDE-------E-------CVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       194 ~~~------~vlh~~~d~-------~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      ++.      .+++..++.       +       ..++|+++.+.|||   ||+++......
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvystcsi  387 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYATCTL  387 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCC
Confidence            973      355544431       1       25889999999999   99988776544

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.60  E-value=6e-08  Score=80.33  Aligned_cols=98  Identities=19%  Similarity=0.283  Sum_probs=76.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---------CCcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---------ISPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---------~p~~  190 (296)
                      ..+..+||+||+++|..++.+++..| +.+++.+|. |+..+.|++      ..+||+++.||..+.         .+.|
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            45678999999999999999999887 589999999 888888876      468999999998751         1259


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      |+|++-.     +..+-...+..+.+.|+|    |.++|+|.+.
T Consensus       123 D~VFiDa-----~K~~y~~y~~~~~~ll~~----ggvii~DN~l  157 (205)
T PF01596_consen  123 DFVFIDA-----DKRNYLEYFEKALPLLRP----GGVIIADNVL  157 (205)
T ss_dssp             EEEEEES-----TGGGHHHHHHHHHHHEEE----EEEEEEETTT
T ss_pred             eEEEEcc-----cccchhhHHHHHhhhccC----CeEEEEcccc
Confidence            9999953     445556889999999999    5566666443

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.60  E-value=1.3e-06  Score=72.96  Aligned_cols=156  Identities=19%  Similarity=0.255  Sum_probs=100.7

Q ss_pred             hhhcccCchHHHHHHHHHHccch-h---chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhh
Q 022515           92 WEYAGDEPKLNNFFNEAMASDAW-L---ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVN  167 (296)
Q Consensus        92 ~~~~~~~~~~~~~f~~~m~~~~~-~---~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~  167 (296)
                      ++.+.++|.....|+........ |   -.+.+++.+.. -++...|.|+|||.+.++.     -..-++..+|+-.   
T Consensus       139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~-r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a---  209 (325)
T KOG3045|consen  139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR-RPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA---  209 (325)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh-CcCceEEEecccchhhhhh-----ccccceeeeeeec---
Confidence            34556677766666654443221 1   23455665551 3456789999999999885     1133677888622   


Q ss_pred             ccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchh
Q 022515          168 GLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSI  244 (296)
Q Consensus       168 ~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~  244 (296)
                            .+-++++.|+.+ |.+  ..|++++...|-.   .+...++++++|+|+|   ||.++|.|....         
T Consensus       210 ------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~---gG~l~IAEv~SR---------  268 (325)
T KOG3045|consen  210 ------VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP---GGLLYIAEVKSR---------  268 (325)
T ss_pred             ------CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc---CceEEEEehhhh---------
Confidence                  223456778888 665  4899888776642   2345789999999999   999999985321         


Q ss_pred             hhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEE
Q 022515          245 ETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEV  294 (296)
Q Consensus       245 ~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~  294 (296)
                          +.             +...+.+.+...||.+....-....+.+.+.
T Consensus       269 ----f~-------------dv~~f~r~l~~lGF~~~~~d~~n~~F~lfef  301 (325)
T KOG3045|consen  269 ----FS-------------DVKGFVRALTKLGFDVKHKDVSNKYFTLFEF  301 (325)
T ss_pred             ----cc-------------cHHHHHHHHHHcCCeeeehhhhcceEEEEEE
Confidence                11             4455788889999987765444444444443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.58  E-value=1.8e-07  Score=83.06  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=72.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------------CCCeeEEeccCCCC-----C-
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------------LANLKYVGGDMFEA-----I-  187 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------------~~ri~~~~~D~~~~-----~-  187 (296)
                      +..+|||+|||.|.-+....... -..++++|+ +..++.|++ .              .-...|..+|.+..     + 
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            67899999999999998888763 347999999 788887765 1              12355677887752     1 


Q ss_pred             -C--ccceeEehhhhcc-CC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          188 -S--PADAVLLKWILHD-WN-DEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       188 -p--~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                       +  .||+|-+...||+ +. .+.+..+|+++...|+|   ||.++.+-+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT~~  187 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGTTP  187 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEEec
Confidence             2  4999999999998 34 55677799999999999   777776553

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.57  E-value=3e-07  Score=79.36  Aligned_cols=82  Identities=15%  Similarity=0.278  Sum_probs=64.4

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCccc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISPAD  191 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~~D  191 (296)
                      ...+++.+.  ..++.+|||||||+|.++..++++  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +++.+|
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d   93 (258)
T PRK14896         18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN   93 (258)
T ss_pred             HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence            445555555  566789999999999999999998  358999999 889888765   24789999999998 777788


Q ss_pred             eeEehhhhccCC
Q 022515          192 AVLLKWILHDWN  203 (296)
Q Consensus       192 ~v~~~~vlh~~~  203 (296)
                      .|+++-- ++++
T Consensus        94 ~Vv~NlP-y~i~  104 (258)
T PRK14896         94 KVVSNLP-YQIS  104 (258)
T ss_pred             EEEEcCC-cccC
Confidence            8777543 3444

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.56  E-value=4.4e-07  Score=83.89  Aligned_cols=105  Identities=14%  Similarity=0.162  Sum_probs=77.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~~  196 (296)
                      ..++.+|||+|||+|..+.++++.. +..+++++|+ +..++.+++     ...++++..+|..+ +  .+ .||.|++.
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            4567899999999999999999876 4679999999 888887765     23568999999876 3  12 49999862


Q ss_pred             ------hhhc-------cCCch-------HHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          197 ------WILH-------DWNDE-------ECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       197 ------~vlh-------~~~d~-------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                            .++.       .++.+       .-.++|.++.+.|+|   ||.++.......
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~~  370 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYSTCTVT  370 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCCC
Confidence                  1222       12211       125789999999999   888776665544

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.53  E-value=1.1e-06  Score=77.65  Aligned_cols=145  Identities=17%  Similarity=0.142  Sum_probs=92.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEe----ccCCCCC--C--cccee
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVG----GDMFEAI--S--PADAV  193 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~----~D~~~~~--p--~~D~v  193 (296)
                      ...++||||||+|.....++.+.++++++++|+ +..++.|++       ..++|++..    .+++...  +  .||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457999999999988888888888999999999 899988876       346888854    2344321  2  49999


Q ss_pred             EehhhhccCCchH---HHHHHHHHH----------------HhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh
Q 022515          194 LLKWILHDWNDEE---CVKILKKCK----------------EAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM  254 (296)
Q Consensus       194 ~~~~vlh~~~d~~---~~~iL~~~~----------------~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~  254 (296)
                      +++=-+|.-..+.   ..+-.++..                +.+.+   ||.+-++..+..+..      ....-..  .
T Consensus       194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi~~mi~eS~------~~~~~~g--w  262 (321)
T PRK11727        194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFIKRMIEESK------AFAKQVL--W  262 (321)
T ss_pred             EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeeehHhhHHHH------HHHhhCc--E
Confidence            9977666433321   112233322                22334   666555554443321      0000001  0


Q ss_pred             hhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          255 MVLLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       255 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      +..+-|+.-+.+.+.+.|++.|.+.++++.+
T Consensus       263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~  293 (321)
T PRK11727        263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM  293 (321)
T ss_pred             EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence            1112366669999999999999988887775

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.53  E-value=7.3e-07  Score=77.18  Aligned_cols=105  Identities=14%  Similarity=0.214  Sum_probs=76.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CCccceeEeh-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--ISPADAVLLK-  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p~~D~v~~~-  196 (296)
                      ..++.+|||+|||+|..+..+++... ...++++|+ +..++.+++     ...++.++.+|... +  .+.||.|++. 
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            45678999999999999999988764 358999999 888877765     33568999998765 2  2359999862 


Q ss_pred             -----hhhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          197 -----WILH-------DWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       197 -----~vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                           .++.       .|..++       ..++|+++.+.|+|   ||+|+.......
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYstcs~~  203 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYSTCSLE  203 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence                 1221       122222       24699999999999   898876654443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.53  E-value=3.5e-07  Score=78.69  Aligned_cols=92  Identities=13%  Similarity=0.251  Sum_probs=66.5

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCccc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISPAD  191 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~~D  191 (296)
                      ...+++.++  ..++.+|||||||+|.++..++++.+  +++++|. +.+++.+++   ..++++++.+|+.+ +.+.+|
T Consensus        18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence            345565555  56778999999999999999999976  5889999 888887765   25789999999998 555566


Q ss_pred             --eeEehhhhccCCchHHHHHHHHHHH
Q 022515          192 --AVLLKWILHDWNDEECVKILKKCKE  216 (296)
Q Consensus       192 --~v~~~~vlh~~~d~~~~~iL~~~~~  216 (296)
                        .+++++.-++++    ..++.++..
T Consensus        94 ~~~~vvsNlPy~i~----~~il~~ll~  116 (253)
T TIGR00755        94 KQLKVVSNLPYNIS----SPLIFKLLE  116 (253)
T ss_pred             CcceEEEcCChhhH----HHHHHHHhc
Confidence              344444444443    345555543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02476 O-methyltransferase

Probab=98.52  E-value=4.9e-07  Score=78.00  Aligned_cols=100  Identities=12%  Similarity=0.129  Sum_probs=78.1

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C------Ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I------SPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~------p~~  190 (296)
                      ..+..+|||||+++|..++.+++..| +.+++.+|. ++..+.|++      ..++|+++.||..+.   .      +.|
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            45678999999999999999998765 668999999 888888876      568999999998661   1      359


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      |+|++-     -+..+-...+..+.+.|+|   ||.|++-+..++
T Consensus       196 D~VFID-----a~K~~Y~~y~e~~l~lL~~---GGvIV~DNvL~~  232 (278)
T PLN02476        196 DFAFVD-----ADKRMYQDYFELLLQLVRV---GGVIVMDNVLWH  232 (278)
T ss_pred             CEEEEC-----CCHHHHHHHHHHHHHhcCC---CcEEEEecCccC
Confidence            999994     3445567889999999999   666555444443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.52  E-value=4.3e-07  Score=75.40  Aligned_cols=101  Identities=17%  Similarity=0.247  Sum_probs=81.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEe-ccCCC--C---CCcccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVG-GDMFE--A---ISPADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~-~D~~~--~---~p~~D~v  193 (296)
                      ..+.++||+||.+.|..++.++...| +.+.|.+|. |+..+.|++      ..++|++.. ||..+  .   .+.||+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            56789999999999999999999999 889999999 999999887      578899888 57765  2   2469999


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK  237 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~  237 (296)
                      |+-     -...+-.+.|..+.+.|+|    |.|+|+|.+....
T Consensus       137 FID-----adK~~yp~~le~~~~lLr~----GGliv~DNvl~~G  171 (219)
T COG4122         137 FID-----ADKADYPEYLERALPLLRP----GGLIVADNVLFGG  171 (219)
T ss_pred             EEe-----CChhhCHHHHHHHHHHhCC----CcEEEEeecccCC
Confidence            994     3444556889999999999    5666666665544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.50  E-value=3.4e-07  Score=79.61  Aligned_cols=74  Identities=15%  Similarity=0.286  Sum_probs=58.3

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCCcc--c
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AISPA--D  191 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p~~--D  191 (296)
                      ..+++.+.  ..++.+|||||||+|.++..++++.+  +++++|+ +.+++.+++  ..++++++.+|+.+ +.+.+  |
T Consensus        32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~  107 (272)
T PRK00274         32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL  107 (272)
T ss_pred             HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence            44555555  56678999999999999999999975  8999999 999998875  33789999999988 55543  5


Q ss_pred             eeEe
Q 022515          192 AVLL  195 (296)
Q Consensus       192 ~v~~  195 (296)
                      .|+.
T Consensus       108 ~vv~  111 (272)
T PRK00274        108 KVVA  111 (272)
T ss_pred             eEEE
Confidence            5544

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.50  E-value=3.6e-07  Score=75.61  Aligned_cols=109  Identities=13%  Similarity=0.215  Sum_probs=67.1

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------CCCCeeEEeccC
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------DLANLKYVGGDM  183 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~D~  183 (296)
                      .+++.+.  +.+...++|||||.|......+..++--+++|+++ +...+.|+.              ...++++..+||
T Consensus        33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf  110 (205)
T PF08123_consen   33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF  110 (205)
T ss_dssp             HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred             HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence            4555555  67788999999999999998888776666999999 777665543              357789999999


Q ss_pred             CC-C-----CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          184 FE-A-----ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       184 ~~-~-----~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      .+ +     +.++|+|++++.+  |+++ ...-|++....||+   |.+|+-.....+
T Consensus       111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~---G~~IIs~~~~~~  162 (205)
T PF08123_consen  111 LDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKP---GARIISTKPFCP  162 (205)
T ss_dssp             TTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-T---T-EEEESS-SS-
T ss_pred             cccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCC---CCEEEECCCcCC
Confidence            98 3     2358999999876  4554 44556777788998   767665444443

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK04148 hypothetical protein; Provisional

Probab=98.50  E-value=1.2e-06  Score=67.03  Aligned_cols=99  Identities=14%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchH-HHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC----ccc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGT-AAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS----PAD  191 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p----~~D  191 (296)
                      ..+.+.++  ..+..++||||||+|. ++..|.+.  +..++++|+ |..++.++  ...++++.+|++++-+    ++|
T Consensus         6 ~~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~--~~~~~~v~dDlf~p~~~~y~~a~   79 (134)
T PRK04148          6 EFIAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAK--KLGLNAFVDDLFNPNLEIYKNAK   79 (134)
T ss_pred             HHHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHH--HhCCeEEECcCCCCCHHHHhcCC
Confidence            33444444  3345789999999996 77777765  679999999 88888776  3357899999999533    589


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +|+..+     |..+...-+.++.+...     .-++|.-.
T Consensus        80 liysir-----pp~el~~~~~~la~~~~-----~~~~i~~l  110 (134)
T PRK04148         80 LIYSIR-----PPRDLQPFILELAKKIN-----VPLIIKPL  110 (134)
T ss_pred             EEEEeC-----CCHHHHHHHHHHHHHcC-----CCEEEEcC
Confidence            999865     66666777777777663     45555443

>PLN02823 spermine synthase

Probab=98.48  E-value=5.9e-07  Score=79.91  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC--C-C-CccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE--A-I-SPADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~--~-~-p~~D~v~  194 (296)
                      .++.+||.||||.|..+..+++..+..+++++|+ |.+++.+++         ..+|++++.+|.++  . . ..||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            3567999999999999999998766778999999 999999886         15799999999877  2 2 2599999


Q ss_pred             ehhhhccCCc--h---HHHHHHH-HHHHhcccCCCCcEEEE
Q 022515          195 LKWILHDWND--E---ECVKILK-KCKEAITSDGKKGKVII  229 (296)
Q Consensus       195 ~~~vlh~~~d--~---~~~~iL~-~~~~aL~p~~~gG~lli  229 (296)
                      +--. ..+..  .   -..++++ .+++.|+|   ||.+++
T Consensus       182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~  218 (336)
T PLN02823        182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVT  218 (336)
T ss_pred             ecCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEE
Confidence            8621 11100  0   0246787 89999999   776544

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.45  E-value=6.9e-07  Score=72.28  Aligned_cols=102  Identities=21%  Similarity=0.219  Sum_probs=67.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC--------CCCCeeEEeccCCCCC------C-ccce
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFEAI------S-PADA  192 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~~~------p-~~D~  192 (296)
                      ..++.+|||+|||+|..++.+++.++..+++.-|.+++++..+.        ...++++...|.-++.      + .||+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            45678999999999999999998877789999999557665543        2577888888865521      2 4999


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      |+.+.++|+  ++....+++-+.+.|+|   +|.+++....+
T Consensus       123 IlasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~~~~R  159 (173)
T PF10294_consen  123 ILASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLAYKRR  159 (173)
T ss_dssp             EEEES--S---GGGHHHHHHHHHHHBTT----TTEEEEEE-S
T ss_pred             EEEecccch--HHHHHHHHHHHHHHhCC---CCEEEEEeCEe
Confidence            999999984  55667889999999999   67777766554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.44  E-value=1.3e-06  Score=71.71  Aligned_cols=120  Identities=16%  Similarity=0.181  Sum_probs=90.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-----ccceeEehhhhccCC
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-----PADAVLLKWILHDWN  203 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-----~~D~v~~~~vlh~~~  203 (296)
                      ..++|||||=+....+.   .++-..++-+|+ +.        .  -.+...||++ |.|     .||+|.++-||-+.|
T Consensus        52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~--~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP  118 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------H--PGILQQDFMERPLPKNESEKFDVISLSLVLNFVP  118 (219)
T ss_pred             cceEEeecccCCCCccc---ccCceeeEEeecCCC--------C--CCceeeccccCCCCCCcccceeEEEEEEEEeeCC
Confidence            36999999876665433   355667999998 42        1  2456789998 765     399999999999999


Q ss_pred             chH-HHHHHHHHHHhcccCCCCcE-----EEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515          204 DEE-CVKILKKCKEAITSDGKKGK-----VIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF  277 (296)
Q Consensus       204 d~~-~~~iL~~~~~aL~p~~~gG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf  277 (296)
                      ++. .-++++++++.|+|   +|.     ++|+-+...                     ..+.+..+.+.|.++++.-||
T Consensus       119 ~p~~RG~Ml~r~~~fL~~---~g~~~~~~LFlVlP~~C---------------------v~NSRy~~~~~l~~im~~LGf  174 (219)
T PF11968_consen  119 DPKQRGEMLRRAHKFLKP---PGLSLFPSLFLVLPLPC---------------------VTNSRYMTEERLREIMESLGF  174 (219)
T ss_pred             CHHHHHHHHHHHHHHhCC---CCccCcceEEEEeCchH---------------------hhcccccCHHHHHHHHHhCCc
Confidence            664 45999999999999   788     776642211                     134555689999999999999


Q ss_pred             ceeEEEEcCC
Q 022515          278 SDYKIIPILG  287 (296)
Q Consensus       278 ~~~~~~~~~~  287 (296)
                      ..++.....-
T Consensus       175 ~~~~~~~~~K  184 (219)
T PF11968_consen  175 TRVKYKKSKK  184 (219)
T ss_pred             EEEEEEecCe
Confidence            9988766553

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.43  E-value=1.1e-06  Score=71.86  Aligned_cols=93  Identities=13%  Similarity=0.218  Sum_probs=67.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC--CCC--ccceeEehhhhccC--
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE--AIS--PADAVLLKWILHDW--  202 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~--~~p--~~D~v~~~~vlh~~--  202 (296)
                      ..-|||||||+|-.+..|...  +...+++|+ |.|++.|.+ ... =.+.-+|+-+  |++  .||-+++...++..  
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~e-gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn  127 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELE-GDLILCDMGEGLPFRPGTFDGVISISAVQWLCN  127 (270)
T ss_pred             CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhh-cCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence            788999999999988766654  678999999 999999974 111 2456677777  332  39988876655321  


Q ss_pred             -------CchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          203 -------NDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       203 -------~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                             |......++..++.+|++   |++-++
T Consensus       128 A~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~  158 (270)
T KOG1541|consen  128 ADKSLHVPKKRLLRFFGTLYSCLKR---GARAVL  158 (270)
T ss_pred             cCccccChHHHHHHHhhhhhhhhcc---CceeEE
Confidence                   333456778889999998   777554

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.43  E-value=7.8e-07  Score=77.04  Aligned_cols=97  Identities=16%  Similarity=0.259  Sum_probs=76.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CCC-ccceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AIS-PADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~p-~~D~v~~  195 (296)
                      .+++||-||||.|..++++++..+--+++.+|+ |.+++.+++         ...|++++.+|-.+   ..+ .||+|++
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            447999999999999999999988889999999 999999987         25899999999876   344 5999998


Q ss_pred             hhhhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          196 KWILHDWNDE---ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       196 ~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      -..=.. ...   -..++++.++++|++   +|.++..
T Consensus       156 D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q  189 (282)
T COG0421         156 DSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ  189 (282)
T ss_pred             cCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence            542110 010   125899999999999   6766655

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.42  E-value=1e-06  Score=77.22  Aligned_cols=90  Identities=14%  Similarity=0.297  Sum_probs=67.3

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS  188 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p  188 (296)
                      ...+++...  ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++      ..++++++.+|+.+ +.+
T Consensus        25 ~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~  100 (294)
T PTZ00338         25 LDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP  100 (294)
T ss_pred             HHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence            345555555  5677899999999999999999874  57999999 889888765      25789999999998 666


Q ss_pred             ccceeEehhhhccCCchHHHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKIL  211 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL  211 (296)
                      .+|+++. +.-++++.+-..++|
T Consensus       101 ~~d~Vva-NlPY~Istpil~~ll  122 (294)
T PTZ00338        101 YFDVCVA-NVPYQISSPLVFKLL  122 (294)
T ss_pred             ccCEEEe-cCCcccCcHHHHHHH
Confidence            7887765 444555555444444

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=8.3e-07  Score=71.95  Aligned_cols=102  Identities=19%  Similarity=0.246  Sum_probs=75.7

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCC---------------CCCCeeEEe
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDS---------------DLANLKYVG  180 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~  180 (296)
                      .+++.+...+.++.+.||||+|+|.++..++..-  ++...+++|. |++++.+++               ...++.++.
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            3444444446788999999999999998888643  4445589999 999987765               357789999


Q ss_pred             ccCCCC---CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          181 GDMFEA---ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       181 ~D~~~~---~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ||-..-   ..+||.|.+...        +.++.+++..-|+|   ||+++|--
T Consensus       151 GDgr~g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrllip~  193 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLIPV  193 (237)
T ss_pred             CCccccCCccCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEEee
Confidence            999883   335999988632        23566677777898   99998853

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.36  E-value=7.5e-07  Score=76.66  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=77.6

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCC----CeeEEeccCCC
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLA----NLKYVGGDMFE  185 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~----ri~~~~~D~~~  185 (296)
                      ..++..|.   ++...++|+|||.|.-++..-++- -..++++|+ .-.++.|++       ...    ...|.++|.+.
T Consensus       108 s~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~  183 (389)
T KOG1975|consen  108 SVLINLYT---KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK  183 (389)
T ss_pred             HHHHHHHh---ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence            34444443   567789999999999998887763 237999999 556788876       112    36788888775


Q ss_pred             C---------CCccceeEehhhhcc-CC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          186 A---------ISPADAVLLKWILHD-WN-DEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       186 ~---------~p~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      .         .|.||+|-+.+++|. |. .+.+..+|+++.+.|+|   ||..+-
T Consensus       184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIg  235 (389)
T KOG1975|consen  184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIG  235 (389)
T ss_pred             hHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEE
Confidence            1         234999999999997 44 55678899999999999   665443

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.36  E-value=2.3e-06  Score=74.38  Aligned_cols=100  Identities=20%  Similarity=0.351  Sum_probs=72.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCC---CCCCeeE--EeccCCC---CCCccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS---DLANLKY--VGGDMFE---AISPADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---~~~ri~~--~~~D~~~---~~p~~D~v~~~~vl  199 (296)
                      .+.+|||+|+|+|..+-+..+.++.. +++++|. +.+.+.++.   .......  ...++..   +.+..|+|+++++|
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L  112 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL  112 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence            45799999999999998888888754 6899999 888887765   1111110  1122221   23457999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      -.++++....+++++.+.+.     +.|+|+|.-.
T Consensus       113 ~EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt  142 (274)
T PF09243_consen  113 NELPSAARAELVRSLWNKTA-----PVLVLVEPGT  142 (274)
T ss_pred             hcCCchHHHHHHHHHHHhcc-----CcEEEEcCCC
Confidence            99998777788888877765     5899998644

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.35  E-value=2.4e-06  Score=83.74  Aligned_cols=98  Identities=12%  Similarity=0.120  Sum_probs=71.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC-CCeeEEeccCCCC---CC-ccceeEeh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL-ANLKYVGGDMFEA---IS-PADAVLLK  196 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~D~~~~---~p-~~D~v~~~  196 (296)
                      .++.+|||+|||+|.+++.+++. ...+++.+|+ +.+++.|++      .. ++++++.+|.++.   .+ .||+|++.
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            34679999999999999999986 2346999999 899998876      22 5899999998762   23 59999983


Q ss_pred             hh--h------ccC-CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          197 WI--L------HDW-NDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       197 ~v--l------h~~-~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      =-  -      ..+ ....-..+++.+.+.|+|   ||.+++.
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~  655 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS  655 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence            10  0      000 012235688899999999   8876554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.34  E-value=1.8e-06  Score=73.47  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=76.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C-------Cc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I-------SP  189 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~-------p~  189 (296)
                      ..+..+||+||.++|..++.+++.. |+.+++.+|. ++..+.|++      ..++|+++.||..+  + .       +.
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            4467899999999999999999876 4779999999 888888766      57999999999876  2 1       35


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      ||+|++-.     ....-...+..+.+.|+|   || ++|+|.+.
T Consensus       157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~---GG-viv~DNvl  192 (247)
T PLN02589        157 FDFIFVDA-----DKDNYINYHKRLIDLVKV---GG-VIGYDNTL  192 (247)
T ss_pred             ccEEEecC-----CHHHhHHHHHHHHHhcCC---Ce-EEEEcCCC
Confidence            99999953     344456788888999998   55 55666443

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.34  E-value=1.7e-06  Score=79.99  Aligned_cols=126  Identities=16%  Similarity=0.216  Sum_probs=77.6

Q ss_pred             hhhcccCchHHHHHHHHHHccchhchHHHHHhcccc--cCCCCEEEEecCCchHHHHHHHHHC----CCCeEEeccc-hh
Q 022515           92 WEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDV--FEGLNSLVDVGGGIGTAAKAIAKAF----PKLECTCFDL-PH  164 (296)
Q Consensus        92 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vLDvGgG~G~~~~~l~~~~----p~~~~~~~D~-~~  164 (296)
                      |+-+++++.....|.+++..       .+.+.....  -.+...|+|||||+|-++...+++.    ...+++.++- |.
T Consensus       153 Ye~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~  225 (448)
T PF05185_consen  153 YEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN  225 (448)
T ss_dssp             HHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred             HhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence            45555666666666665432       222221100  1135789999999999987766653    3468999997 65


Q ss_pred             HhhccC----C--CCCCeeEEeccCCC-CCC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEE
Q 022515          165 VVNGLD----S--DLANLKYVGGDMFE-AIS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKV  227 (296)
Q Consensus       165 ~~~~a~----~--~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~l  227 (296)
                      ++...+    +  ..++|+++.+|+.+ ..| .+|++++-..=.....|-..+.|..+.+.|+|   ||.+
T Consensus       226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi~  293 (448)
T PF05185_consen  226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGIM  293 (448)
T ss_dssp             HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEEE
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCEE
Confidence            443321    1  67999999999999 666 59999886654333444556778889999999   6543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.32  E-value=4.4e-06  Score=76.20  Aligned_cols=98  Identities=9%  Similarity=0.031  Sum_probs=69.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC-CCeeEEeccCCCC---C---C-cccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL-ANLKYVGGDMFEA---I---S-PADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~D~~~~---~---p-~~D~v  193 (296)
                      .++.+|||+|||+|.++++.+.. ...+++.+|+ +.+++.+++      .. ++++++.+|.++.   .   . .||+|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            35689999999999998876643 3458999999 899988876      22 4899999999872   1   2 49999


Q ss_pred             EehhhhccCCc--------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          194 LLKWILHDWND--------EECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       194 ~~~~vlh~~~d--------~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++.=-- .-..        ..-..+++.+.+.|+|   ||.++.+.
T Consensus       298 ilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~s  339 (396)
T PRK15128        298 VMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTFS  339 (396)
T ss_pred             EECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEEe
Confidence            985211 0011        1223556678899999   88877655

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=1.5e-06  Score=69.60  Aligned_cols=66  Identities=20%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCCccceeEeh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAISPADAVLLK  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~v~~~  196 (296)
                      .+.+|+|+|||||.+++..+-..| .+++++|+ |+.++.+++    ..+++.|+..|..+-...+|.++++
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN  115 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN  115 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence            457899999999999988777644 58999999 999988876    6789999999998855568877774

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.29  E-value=3e-06  Score=74.76  Aligned_cols=137  Identities=13%  Similarity=0.169  Sum_probs=90.3

Q ss_pred             hhhhcCCCchhhcccCchHHHHH--HHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC----CCCe
Q 022515           83 FDTAHGKTLWEYAGDEPKLNNFF--NEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF----PKLE  156 (296)
Q Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~f--~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~----p~~~  156 (296)
                      |+...|..+|+-+.+.|++.-.-  ...+..    -...+...+    .++.+|+|+|||+|.=...|++..    ...+
T Consensus        35 ~YD~~Gs~LFe~It~lpEYYptr~E~~iL~~----~~~~Ia~~i----~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~  106 (319)
T TIGR03439        35 LYDDEGLKLFEEITYSPEYYLTNDEIEILKK----HSSDIAASI----PSGSMLVELGSGNLRKVGILLEALERQKKSVD  106 (319)
T ss_pred             hhcchHHHHHHHHHcCCccCChHHHHHHHHH----HHHHHHHhc----CCCCEEEEECCCchHHHHHHHHHHHhcCCCce
Confidence            34444666777666655432100  111111    123444433    355689999999999888777765    3468


Q ss_pred             EEeccc-hhHhhccCC-----CCCCeeE--EeccCCCC---CC------ccce-eEehhhhccCCchHHHHHHHHHHH-h
Q 022515          157 CTCFDL-PHVVNGLDS-----DLANLKY--VGGDMFEA---IS------PADA-VLLKWILHDWNDEECVKILKKCKE-A  217 (296)
Q Consensus       157 ~~~~D~-~~~~~~a~~-----~~~ri~~--~~~D~~~~---~p------~~D~-v~~~~vlh~~~d~~~~~iL~~~~~-a  217 (296)
                      ++.+|+ .+.++.+.+     ....+++  +++||.+.   .+      ...+ .++.+.+.+++++++..+|+++++ .
T Consensus       107 Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~  186 (319)
T TIGR03439       107 YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATA  186 (319)
T ss_pred             EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhh
Confidence            999999 678876654     2244555  78998662   11      1344 455779999999999999999999 9


Q ss_pred             cccCCCCcEEEEE
Q 022515          218 ITSDGKKGKVIII  230 (296)
Q Consensus       218 L~p~~~gG~lli~  230 (296)
                      |+|   |+.++|.
T Consensus       187 l~~---~d~lLiG  196 (319)
T TIGR03439       187 LSP---SDSFLIG  196 (319)
T ss_pred             CCC---CCEEEEe
Confidence            999   7877774

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00536 speE spermidine synthase; Provisional

Probab=98.28  E-value=3.7e-06  Score=72.07  Aligned_cols=88  Identities=14%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCCCC-CccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFEAI-SPADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~~~-p~~D~v~~~~  197 (296)
                      +++++||=||||.|..++++++. |. +++.+|+ ++|++.+++         ...|++++.. +.+.. ..||+|++-.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence            46799999999999999999986 54 9999999 999998887         4788888862 32222 3599999864


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      .    .+   ....+.++++|+|   ||.++.
T Consensus       148 ~----~~---~~fy~~~~~~L~~---~Gi~v~  169 (262)
T PRK00536        148 E----PD---IHKIDGLKRMLKE---DGVFIS  169 (262)
T ss_pred             C----CC---hHHHHHHHHhcCC---CcEEEE
Confidence            2    22   3678999999999   666554

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.28  E-value=2.5e-06  Score=73.81  Aligned_cols=95  Identities=13%  Similarity=0.147  Sum_probs=75.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCCc-cceeEehhhhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AISP-ADAVLLKWILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p~-~D~v~~~~vlh~  201 (296)
                      .++.|||||||+|-++.--+.+- ..++..++-.+|.+.|++      ..+||.+++|-+.+ ++|. .|+++.--.-..
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m  255 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM  255 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence            35789999999999997666653 447888998999999887      68999999999999 8884 999988544444


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                      .-.+...+-.-.+++.|+|   .|+++
T Consensus       256 L~NERMLEsYl~Ark~l~P---~GkMf  279 (517)
T KOG1500|consen  256 LVNERMLESYLHARKWLKP---NGKMF  279 (517)
T ss_pred             hhhHHHHHHHHHHHhhcCC---CCccc
Confidence            4566666666678899999   78776

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.27  E-value=4.7e-06  Score=77.35  Aligned_cols=91  Identities=22%  Similarity=0.358  Sum_probs=65.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC-----C-C-ccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA-----I-S-PADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~-----~-p-~~D~v~  194 (296)
                      ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.|++     ..++++|+.+|+.+.     . . .+|+|+
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi  367 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL  367 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence            4566799999999999999999874  48999999 999988876     346899999998651     1 1 389988


Q ss_pred             ehhhhccCCchH-HHHHHHHHHHhcccCCCCcEEEE
Q 022515          195 LKWILHDWNDEE-CVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       195 ~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      +     +-|... ...+++.+.+ ++|   ++.+++
T Consensus       368 ~-----dPPr~G~~~~~l~~l~~-l~~---~~ivyv  394 (431)
T TIGR00479       368 L-----DPPRKGCAAEVLRTIIE-LKP---ERIVYV  394 (431)
T ss_pred             E-----CcCCCCCCHHHHHHHHh-cCC---CEEEEE
Confidence            7     223221 2355665543 777   565555

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.26  E-value=2.3e-06  Score=70.68  Aligned_cols=97  Identities=11%  Similarity=0.143  Sum_probs=65.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C-ccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S-PADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p-~~D~v~~~~vl  199 (296)
                      ...+|||+|||+|.+++.++.+. ..+++++|. +..++.+++     ..++++++.+|+++..   . .||+|++.=-.
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            45699999999999999766665 368999999 888877765     2457999999987622   2 49999984322


Q ss_pred             ccCCchHHHHHHHHHHHh--cccCCCCcEEEEEeeee
Q 022515          200 HDWNDEECVKILKKCKEA--ITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~a--L~p~~~gG~lli~e~~~  234 (296)
                      +   ..-...+++.+...  |+|    ++++++|...
T Consensus       132 ~---~g~~~~~l~~l~~~~~l~~----~~iv~ve~~~  161 (199)
T PRK10909        132 R---KGLLEETINLLEDNGWLAD----EALIYVESEV  161 (199)
T ss_pred             C---CChHHHHHHHHHHCCCcCC----CcEEEEEecC
Confidence            1   11122344544443  677    4566666543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.25  E-value=1.5e-06  Score=74.38  Aligned_cols=100  Identities=19%  Similarity=0.295  Sum_probs=74.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---C-CC-cccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---A-IS-PADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~-~p-~~D~v  193 (296)
                      +++.+||=||+|.|..+.++++..+..+++++|+ |.+++.+++         ..+|++++.+|...   . .. .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            4678999999999999999987766779999999 999999887         25799999999865   2 33 59999


Q ss_pred             EehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          194 LLKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       194 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++-..--..+...  ..++++.+++.|+|   ||.+++.-
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEEc
Confidence            9843221111111  35889999999999   66665544

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.25  E-value=3.3e-06  Score=75.06  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=53.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--C-CccceeEeh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--I-SPADAVLLK  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~-p~~D~v~~~  196 (296)
                      ++.+|||+|||+|.++..+++.  ..+++++|. +.+++.|++     ..++++|+.+|+.+ .  . ..||+|++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            4579999999999999999985  568999999 999988875     23679999999976 2  2 248999884

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.24  E-value=9.6e-06  Score=63.51  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=91.0

Q ss_pred             hhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C----
Q 022515          114 WLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A----  186 (296)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~----  186 (296)
                      .+++..+....+  +..+.-||++|.|||.++.+++++- +.-..+.++. ++......+..+.++++.||.+. .    
T Consensus        34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~  111 (194)
T COG3963          34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG  111 (194)
T ss_pred             HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence            345566666666  6677899999999999999998863 5556777877 76665554456667789999886 3    


Q ss_pred             -C--CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          187 -I--SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       187 -~--p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                       .  +.||.|++.--+-.+|-....++|+.+...|.+   ||.++-+..-
T Consensus       112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqftYg  158 (194)
T COG3963         112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQFTYG  158 (194)
T ss_pred             hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEEEec
Confidence             2  249999999988899998899999999999999   8888877764

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.23  E-value=1e-05  Score=67.08  Aligned_cols=125  Identities=16%  Similarity=0.181  Sum_probs=86.8

Q ss_pred             EEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--c-cceeEehhhhccCC
Q 022515          134 LVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--P-ADAVLLKWILHDWN  203 (296)
Q Consensus       134 vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--~-~D~v~~~~vlh~~~  203 (296)
                      |.||||-+|.+.+.|+++...-+++..|+ +.-++.|++      ..++|++..+|-++.++  . .|+|++..+    .
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence            68999999999999999987779999999 888888876      68999999999888543  3 788888654    4


Q ss_pred             chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515          204 DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII  283 (296)
Q Consensus       204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  283 (296)
                      -....+||.+....++.   ..++++ -+.                             .....+++||.+.||.++.=.
T Consensus        77 G~lI~~ILe~~~~~~~~---~~~lIL-qP~-----------------------------~~~~~LR~~L~~~gf~I~~E~  123 (205)
T PF04816_consen   77 GELIIEILEAGPEKLSS---AKRLIL-QPN-----------------------------THAYELRRWLYENGFEIIDED  123 (205)
T ss_dssp             HHHHHHHHHHTGGGGTT-----EEEE-EES-----------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHhhHHHhcc---CCeEEE-eCC-----------------------------CChHHHHHHHHHCCCEEEEeE
Confidence            55667888888777664   233333 221                             045688999999999987644


Q ss_pred             Ec---CCcceEEEEe
Q 022515          284 PI---LGLRSLIEVY  295 (296)
Q Consensus       284 ~~---~~~~~vi~~~  295 (296)
                      -+   +-++.||.+.
T Consensus       124 lv~e~~~~YeIi~~~  138 (205)
T PF04816_consen  124 LVEENGRFYEIIVAE  138 (205)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEeECCEEEEEEEEE
Confidence            43   2345566553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.23  E-value=3.1e-06  Score=71.34  Aligned_cols=76  Identities=17%  Similarity=0.390  Sum_probs=64.7

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI  187 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~  187 (296)
                      +...+++..+  .++...||+||.|||.++..++++  +.+++.+++ |.++...++      ...+.++..||+++ ++
T Consensus        46 v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~  121 (315)
T KOG0820|consen   46 VIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL  121 (315)
T ss_pred             HHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence            4556666666  788899999999999999999999  678999998 888876654      46899999999999 88


Q ss_pred             CccceeEe
Q 022515          188 SPADAVLL  195 (296)
Q Consensus       188 p~~D~v~~  195 (296)
                      |-+|.++.
T Consensus       122 P~fd~cVs  129 (315)
T KOG0820|consen  122 PRFDGCVS  129 (315)
T ss_pred             cccceeec
Confidence            98998887

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.21  E-value=7.5e-06  Score=68.89  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=83.9

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc-cCCCCCCee-EEeccCCC--------CC
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG-LDSDLANLK-YVGGDMFE--------AI  187 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~ri~-~~~~D~~~--------~~  187 (296)
                      .+++.++- ...+.++||+|||+|.++..+++. +..+++++|. +.++.. .+ ...|+. +...|+..        ++
T Consensus        65 ~~l~~~~~-~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~-~~~~v~~~~~~ni~~~~~~~~~~d~  141 (228)
T TIGR00478        65 EALEEFNI-DVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLR-QDERVKVLERTNIRYVTPADIFPDF  141 (228)
T ss_pred             HHHHhcCC-CCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHh-cCCCeeEeecCCcccCCHhHcCCCc
Confidence            44444441 135679999999999999999986 3458999999 656654 33 344433 33334432        12


Q ss_pred             CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcccc----
Q 022515          188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTER----  263 (296)
Q Consensus       188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r----  263 (296)
                      +.+|+.+++..+          +|..+.++|+|   |-.++++.+-+.-...         ..      .-+|-.+    
T Consensus       142 ~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~KPqFE~~~~---------~~------~~~giv~~~~~  193 (228)
T TIGR00478       142 ATFDVSFISLIS----------ILPELDLLLNP---NDLTLLFKPQFEAGRE---------KK------NKKGVVRDKEA  193 (228)
T ss_pred             eeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEcChHhhhcHh---------hc------CcCCeecCHHH
Confidence            247888877543          47788889997   5555555433321110         00      0122222    


Q ss_pred             ---CHHHHHHHHHhcCCceeEEEEcC
Q 022515          264 ---DEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       264 ---t~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                         -.+++...+.+.||++..+.+.+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~s~  219 (228)
T TIGR00478       194 IALALHKVIDKGESPDFQEKKIIFSL  219 (228)
T ss_pred             HHHHHHHHHHHHHcCCCeEeeEEECC
Confidence               44677778888899988887654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.19  E-value=1.9e-06  Score=72.30  Aligned_cols=96  Identities=19%  Similarity=0.261  Sum_probs=71.2

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CC-CCeeEEeccCCC--C--CC--ccceeEehhhh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DL-ANLKYVGGDMFE--A--IS--PADAVLLKWIL  199 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~D~~~--~--~p--~~D~v~~~~vl  199 (296)
                      ..+||||||.|.++.++++++|+..++++++ ..++..+.+    .. .++.++++|...  +  .+  ..|-|++.+-=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            5899999999999999999999999999999 666655543    33 389999999876  2  22  35666663211


Q ss_pred             ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          200 HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       200 h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       -|+...       ...+|+.+.+.|+|   ||.|.+..
T Consensus       130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aT  164 (227)
T COG0220         130 -PWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFAT  164 (227)
T ss_pred             -CCCCccccccccCCHHHHHHHHHHccC---CCEEEEEe
Confidence             133221       14789999999999   89888765

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.19  E-value=3.5e-06  Score=73.70  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=71.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWIL  199 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl  199 (296)
                      -.+++|||||||+|-+++--+++. ..++.++|-..+++.|++      ..+.|++..|.+.+ .+|  ..|+|++-|.-
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG  137 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence            456899999999999999877776 568999998888887766      67889999998888 555  59999987766


Q ss_pred             ccCCchHH-HHHHHHHHHhcccCCCCcEEE
Q 022515          200 HDWNDEEC-VKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       200 h~~~d~~~-~~iL~~~~~aL~p~~~gG~ll  228 (296)
                      +..=-+.. ..+|-.=-+.|+|   ||.++
T Consensus       138 y~Ll~EsMldsVl~ARdkwL~~---~G~i~  164 (346)
T KOG1499|consen  138 YFLLYESMLDSVLYARDKWLKE---GGLIY  164 (346)
T ss_pred             HHHHHhhhhhhhhhhhhhccCC---CceEc
Confidence            55433322 2333333467898   77654

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.08  E-value=1.3e-05  Score=65.90  Aligned_cols=142  Identities=18%  Similarity=0.244  Sum_probs=90.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC--eeEEeccCCC-CCC--ccceeEehhhhcc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN--LKYVGGDMFE-AIS--PADAVLLKWILHD  201 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r--i~~~~~D~~~-~~p--~~D~v~~~~vlh~  201 (296)
                      +....++|||||-|+...++.... --+.+..|. ..|++.++. ..+.  +....+|-.. ++.  .+|+++.+..+|.
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence            345689999999999999999885 337888998 789988876 3333  3445566554 444  4999999999985


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcccc------CHHHHHHHHHhc
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTER------DEKEWTKLFTYA  275 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~r------t~~e~~~ll~~a  275 (296)
                      .+|-  ..-+.+|+.+|||   +| ++|....-.+.     ..+.....-+--+-.-||-..      ...++-.+|..|
T Consensus       150 ~NdL--Pg~m~~ck~~lKP---Dg-~FiasmlggdT-----LyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA  218 (325)
T KOG2940|consen  150 TNDL--PGSMIQCKLALKP---DG-LFIASMLGGDT-----LYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA  218 (325)
T ss_pred             hccC--chHHHHHHHhcCC---Cc-cchhHHhcccc-----HHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence            5543  3568899999999   55 34443332221     111111111111111233211      346788999999


Q ss_pred             CCceeEE
Q 022515          276 GFSDYKI  282 (296)
Q Consensus       276 Gf~~~~~  282 (296)
                      ||....+
T Consensus       219 GF~m~tv  225 (325)
T KOG2940|consen  219 GFSMLTV  225 (325)
T ss_pred             Cccccee
Confidence            9986654

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.06  E-value=8.4e-06  Score=69.37  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=77.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      ..+..++|+|||.|.+..    .+|.+-.++.|+ -..+..+++ .+.......|+.+ +.+  .+|..+...++||+..
T Consensus        44 ~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~-~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT  118 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR-SGGDNVCRADALKLPFREESFDAALSIAVIHHLST  118 (293)
T ss_pred             CCcceeeecccCCcccCc----CCCcceeeecchhhhhcccccc-CCCceeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence            346789999999998863    358889999999 677777773 2222566778888 554  4999999999999985


Q ss_pred             h-HHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          205 E-ECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       205 ~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      . ....+++++.+.++|   ||..+|.-...
T Consensus       119 ~~RR~~~l~e~~r~lrp---gg~~lvyvwa~  146 (293)
T KOG1331|consen  119 RERRERALEELLRVLRP---GGNALVYVWAL  146 (293)
T ss_pred             HHHHHHHHHHHHHHhcC---CCceEEEEehh
Confidence            4 456899999999999   99988776543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.06  E-value=9.3e-06  Score=70.85  Aligned_cols=78  Identities=18%  Similarity=0.223  Sum_probs=63.0

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-C--CCCeeEEeccCCC-C--C
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-D--LANLKYVGGDMFE-A--I  187 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-~--~~ri~~~~~D~~~-~--~  187 (296)
                      +..++++.+.  ..++..+||.+||.|..+..+++.+| +.+++++|. |.+++.+++ .  .+|++++.+||.+ .  .
T Consensus         7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l   84 (296)
T PRK00050          7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL   84 (296)
T ss_pred             cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence            3456777776  56678999999999999999999986 789999999 999999876 2  3689999999876 1  1


Q ss_pred             ----CccceeEe
Q 022515          188 ----SPADAVLL  195 (296)
Q Consensus       188 ----p~~D~v~~  195 (296)
                          +.+|.|++
T Consensus        85 ~~~~~~vDgIl~   96 (296)
T PRK00050         85 AEGLGKVDGILL   96 (296)
T ss_pred             HcCCCccCEEEE
Confidence                14777766

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.97  E-value=1.3e-05  Score=72.85  Aligned_cols=90  Identities=16%  Similarity=0.133  Sum_probs=63.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--C-CccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--I-SPADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~-p~~D~v~~~~vl  199 (296)
                      +..+|||+|||+|.++..++..  ..+++++|. +.+++.|++     ..++++|..+|+.+ .  . ..||+|++.   
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D---  307 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN---  307 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC---
Confidence            4579999999999999999864  568999999 888887775     33589999999865 1  2 248998883   


Q ss_pred             ccCCchH-HHHHHHHHHHhcccCCCCcEEEEE
Q 022515          200 HDWNDEE-CVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       200 h~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                        -|... ..++++.+. .++|   ++.+++.
T Consensus       308 --PPr~G~~~~~l~~l~-~~~p---~~ivyvs  333 (374)
T TIGR02085       308 --PPRRGIGKELCDYLS-QMAP---KFILYSS  333 (374)
T ss_pred             --CCCCCCcHHHHHHHH-hcCC---CeEEEEE
Confidence              22221 124455554 3677   5544443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.97  E-value=4.5e-05  Score=63.09  Aligned_cols=128  Identities=16%  Similarity=0.135  Sum_probs=90.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCC---CCC--ccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFE---AIS--PADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~---~~p--~~D~v~  194 (296)
                      .+.+.+|||.-.|-|..+++-+++- ...++-++- |.|++.|.-       ...+|+++.||..+   +++  .||+|+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            3467899999999999999988883 237888888 999988864       34579999999887   344  388875


Q ss_pred             ehhhhccCC------chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          195 LKWILHDWN------DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       195 ~~~vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                           ||-|      .--..++-++++|.|+|   ||+++-.-...   ...      ..-.|            -+...
T Consensus       211 -----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHYvG~P---g~r------yrG~d------------~~~gV  261 (287)
T COG2521         211 -----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHYVGNP---GKR------YRGLD------------LPKGV  261 (287)
T ss_pred             -----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEEeCCC---Ccc------cccCC------------hhHHH
Confidence                 4433      12345789999999999   99987543211   100      00111            34678


Q ss_pred             HHHHHhcCCceeEEEEc
Q 022515          269 TKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~~  285 (296)
                      .+.|+++||.+++...-
T Consensus       262 a~RLr~vGF~~v~~~~~  278 (287)
T COG2521         262 AERLRRVGFEVVKKVRE  278 (287)
T ss_pred             HHHHHhcCceeeeeehh
Confidence            89999999998776543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.97  E-value=2.4e-05  Score=73.82  Aligned_cols=98  Identities=13%  Similarity=0.230  Sum_probs=71.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCC--ccceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AIS--PADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p--~~D~v~~~~v  198 (296)
                      ....+||||||.|.++.++++++|+..++++|+ ...+..+.+     ...++.+.++|+..   .++  ..|.+++.+-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            457899999999999999999999999999999 655544332     45678888887642   244  3777777432


Q ss_pred             hccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          199 LHDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       199 lh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      = -|+...       ...+|+.+++.|+|   ||.+.+..
T Consensus       427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~T  462 (506)
T PRK01544        427 D-PWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFAS  462 (506)
T ss_pred             C-CCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEEc
Confidence            1 133221       24789999999999   99887755

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.94  E-value=2.2e-05  Score=64.44  Aligned_cols=98  Identities=14%  Similarity=0.139  Sum_probs=65.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C--C-c-cceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I--S-P-ADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~--p-~-~D~v~~  195 (296)
                      .+.+|||++||+|.++.+++.+.. .+++.+|. +.+++.+++      ..++++++.+|.++.   .  . . +|+|++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            357899999999999999999864 37999999 888876655      345899999998651   1  1 2 677766


Q ss_pred             hhhhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeeeC
Q 022515          196 KWILHDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~~~  235 (296)
                      .=-..   ......++..+..  .+++    +.++|+|....
T Consensus       128 DPPy~---~~~~~~~l~~l~~~~~l~~----~~iiv~E~~~~  162 (189)
T TIGR00095       128 DPPFF---NGALQALLELCENNWILED----TVLIVVEEDRE  162 (189)
T ss_pred             CcCCC---CCcHHHHHHHHHHCCCCCC----CeEEEEEecCC
Confidence            22111   1112234444433  4665    66777776543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00037  Score=55.53  Aligned_cols=66  Identities=15%  Similarity=0.351  Sum_probs=51.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC--CccceeEeh
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI--SPADAVLLK  196 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~--p~~D~v~~~  196 (296)
                      ..-++|||||+|..+..|++.. |+..+...|+ |..++...+    ...+++.+..|+.+.+  .+.|+.+++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEEC
Confidence            5789999999999998888754 7888999999 888877544    4555778888888732  347777664

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=6.6e-05  Score=63.96  Aligned_cols=84  Identities=12%  Similarity=0.283  Sum_probs=62.2

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc--
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP--  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~--  189 (296)
                      .+.+++...  ..+..+|++||+|.|.++..|+++..  +++++++ +..++..++   ..++++++.+|+.+ +++.  
T Consensus        19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~   94 (259)
T COG0030          19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA   94 (259)
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence            456666666  56688999999999999999999954  6777877 777776665   47999999999999 7774  


Q ss_pred             -cceeEehhhhccCCch
Q 022515          190 -ADAVLLKWILHDWNDE  205 (296)
Q Consensus       190 -~D~v~~~~vlh~~~d~  205 (296)
                       ++.|+. +.=++.+.+
T Consensus        95 ~~~~vVa-NlPY~Issp  110 (259)
T COG0030          95 QPYKVVA-NLPYNISSP  110 (259)
T ss_pred             CCCEEEE-cCCCcccHH
Confidence             344443 444444443

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=97.86  E-value=7.5e-06  Score=51.55  Aligned_cols=37  Identities=54%  Similarity=0.993  Sum_probs=30.6

Q ss_pred             HHHHHHHHcCcchhcccCC-CCCCHHHHHHHcC-CCCcc
Q 022515           30 MTLKCAIQLGIPDIISKHG-KPMTLNELVSALT-INPSK   66 (296)
Q Consensus        30 ~~l~~a~~l~lf~~L~~~~-~~~t~~eLA~~~~-~~~~~   66 (296)
                      .+|++|+||||||.|..++ +|.|++|||.++. .++..
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~   39 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSA   39 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcch
Confidence            4799999999999998865 7999999999999 66553

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.79  E-value=6.3e-05  Score=68.37  Aligned_cols=91  Identities=18%  Similarity=0.122  Sum_probs=70.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC--C-CCccceeEehhhhcc
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE--A-ISPADAVLLKWILHD  201 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~--~-~p~~D~v~~~~vlh~  201 (296)
                      ..+|||++||+|.+++.++...+..+++++|+ |..++.+++     ..+.+++..+|...  . ...||+|++.= .  
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~--  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F--  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence            46899999999999999998877668999999 888887765     23456788888765  2 23599999832 1  


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                         .....++..+.+.+++   ||.+++.
T Consensus       135 ---Gs~~~~l~~al~~~~~---~gilyvS  157 (382)
T PRK04338        135 ---GSPAPFLDSAIRSVKR---GGLLCVT  157 (382)
T ss_pred             ---CCcHHHHHHHHHHhcC---CCEEEEE
Confidence               1224677887788898   8988888

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.75  E-value=5.3e-05  Score=64.09  Aligned_cols=67  Identities=13%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC----CCC----ccceeE
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE----AIS----PADAVL  194 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~----~~p----~~D~v~  194 (296)
                      .+..+||+|||+|..+..++...|..+++.+|. +..+..|.+      ..+|+.++..++..    +.+    .+|+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            345899999999999999999999999999999 777665543      78999988555443    222    378777


Q ss_pred             eh
Q 022515          195 LK  196 (296)
Q Consensus       195 ~~  196 (296)
                      ++
T Consensus       228 sN  229 (328)
T KOG2904|consen  228 SN  229 (328)
T ss_pred             cC
Confidence            63

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.73  E-value=6.1e-05  Score=61.31  Aligned_cols=90  Identities=21%  Similarity=0.311  Sum_probs=68.0

Q ss_pred             EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc---cCC--CCCCeeEEeccCCC-CC-CccceeEehhhhccCCc
Q 022515          133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG---LDS--DLANLKYVGGDMFE-AI-SPADAVLLKWILHDWND  204 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~--~~~ri~~~~~D~~~-~~-p~~D~v~~~~vlh~~~d  204 (296)
                      +++|||.|.|.-++-|+=.+|+.+++.+|. ..=+..   +.+  ..+++++..+...+ .. ..||+|+++.+-.    
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~----  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP----  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence            899999999999999999999999999997 443332   222  45689999998887 33 3599999987641    


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                        ...++.-+...+++   ||+++..-
T Consensus       127 --l~~l~~~~~~~l~~---~G~~l~~K  148 (184)
T PF02527_consen  127 --LDKLLELARPLLKP---GGRLLAYK  148 (184)
T ss_dssp             --HHHHHHHHGGGEEE---EEEEEEEE
T ss_pred             --HHHHHHHHHHhcCC---CCEEEEEc
Confidence              33677888888999   89888765

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.69  E-value=0.00018  Score=63.28  Aligned_cols=93  Identities=24%  Similarity=0.425  Sum_probs=72.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------------CCCCeeEEeccCCC-C--C-Ccc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFE-A--I-SPA  190 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~-~--~-p~~  190 (296)
                      ++.+++|-+|||.|-.++++++ ||+ -+++.+|+ |.|++.++.            ...|++++..|.++ -  - ..|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            5668999999999999998876 684 58999999 999998874            47899999999887 2  1 249


Q ss_pred             ceeEehhhhccCCchH--------HHHHHHHHHHhcccCCCCcEEEEE
Q 022515          191 DAVLLKWILHDWNDEE--------CVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~--------~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      |+++.     |++|+.        ..++-+-+++.|++   +|.+++-
T Consensus       367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ  406 (508)
T COG4262         367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ  406 (508)
T ss_pred             cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence            99987     445443        24677778889998   6766553

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.68  E-value=1.2e-05  Score=73.66  Aligned_cols=97  Identities=15%  Similarity=0.205  Sum_probs=66.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEec---cc-hhHhhccCCCCCCeeEEeccCC--C-CCCc--cceeEehhhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCF---DL-PHVVNGLDSDLANLKYVGGDMF--E-AISP--ADAVLLKWIL  199 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~ri~~~~~D~~--~-~~p~--~D~v~~~~vl  199 (296)
                      ...+++||||||+|.++..|+++  ++....+   |. +..++.|.+  -.|-..-+-+-  . |+|.  ||+|-++.++
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale--RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~  191 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE--RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL  191 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh--cCcchhhhhhccccccCCccchhhhhccccc
Confidence            34579999999999999999998  4433222   33 334444431  11332322221  2 6663  9999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      ..|...+- .+|-++-|+|+|   ||.++....-
T Consensus       192 i~W~~~~g-~~l~evdRvLRp---GGyfv~S~pp  221 (506)
T PF03141_consen  192 IPWHPNDG-FLLFEVDRVLRP---GGYFVLSGPP  221 (506)
T ss_pred             ccchhccc-ceeehhhhhhcc---CceEEecCCc
Confidence            99987763 588999999999   8887765543

; GO: 0008168 methyltransferase activity

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.67  E-value=2e-05  Score=63.91  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=84.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec-cCCCCCCccceeEehhhhccCCchHH
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG-DMFEAISPADAVLLKWILHDWNDEEC  207 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~-D~~~~~p~~D~v~~~~vlh~~~d~~~  207 (296)
                      .+.++||+|.|.|..+..++..+.+  +..-++ ..|..+.++  .+.++... +..+.--++|+|.+.++|.-..++  
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~k--k~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--  185 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKK--KNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--  185 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhh--cCCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence            4579999999999999888877653  444455 566666553  11222111 111111259999999999544444  


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEeeeeCCCC-CCCchhhhhhhhhhhhhhhcCcccc--CHHHHHHHHHhcCCceeEEEE
Q 022515          208 VKILKKCKEAITSDGKKGKVIIIDMIRENKK-GDDKSIETQLFFDMLMMVLLTGTER--DEKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       208 ~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~r--t~~e~~~ll~~aGf~~~~~~~  284 (296)
                      -++|+.++.+|+|.  .|++++.= +.|-.. .+  ......+..-.-....+|+.+  ....+.++|+.+||.+.....
T Consensus       186 ~kLL~Di~~vl~ps--ngrvivaL-VLP~~hYVE--~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTr  260 (288)
T KOG3987|consen  186 FKLLEDIHLVLAPS--NGRVIVAL-VLPYMHYVE--TNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTR  260 (288)
T ss_pred             HHHHHHHHHHhccC--CCcEEEEE-Eecccceee--cCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhc
Confidence            48999999999994  67765543 222100 00  000000000000112345533  345678999999999887776


Q ss_pred             cC
Q 022515          285 IL  286 (296)
Q Consensus       285 ~~  286 (296)
                      .|
T Consensus       261 lP  262 (288)
T KOG3987|consen  261 LP  262 (288)
T ss_pred             CC
Confidence            54

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.65  E-value=2.6e-05  Score=66.57  Aligned_cols=86  Identities=17%  Similarity=0.308  Sum_probs=58.0

Q ss_pred             EEeccCCCC--C------Cc-cceeEehhhhccCC--chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh
Q 022515          178 YVGGDMFEA--I------SP-ADAVLLKWILHDWN--DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET  246 (296)
Q Consensus       178 ~~~~D~~~~--~------p~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~  246 (296)
                      ++..|..++  +      |+ ||++++..+|....  .+.-.+.++++.++|||   ||.+++....-..          
T Consensus       138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~~~l~~t----------  204 (256)
T PF01234_consen  138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILAGVLGST----------  204 (256)
T ss_dssp             EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEEEESS-S----------
T ss_pred             EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEEEEcCce----------
Confidence            567788772  2      33 99999999987643  33456889999999999   8888887753211          


Q ss_pred             hhhhhhhhhhhcCc-----cccCHHHHHHHHHhcCCceeEEEE
Q 022515          247 QLFFDMLMMVLLTG-----TERDEKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       247 ~~~~~~~~~~~~~g-----~~rt~~e~~~ll~~aGf~~~~~~~  284 (296)
                        ++      ..|+     -..+.+.+++.++++||.+.+...
T Consensus       205 --~Y------~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  205 --YY------MVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             --EE------EETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred             --eE------EECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence              00      1122     233889999999999999988875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.62  E-value=0.00042  Score=57.55  Aligned_cols=120  Identities=21%  Similarity=0.256  Sum_probs=82.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh---hccCC--CCCCeeEEeccCCC-C-CCc-cceeEehhhhcc
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV---NGLDS--DLANLKYVGGDMFE-A-ISP-ADAVLLKWILHD  201 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~---~~a~~--~~~ri~~~~~D~~~-~-~p~-~D~v~~~~vlh~  201 (296)
                      ..+++|||.|.|.-++-++=.+|++++|.+|. ..=+   +.+.+  ..++++++.+...+ . .+. ||+|+++.+-  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva--  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA--  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence            58999999999999999999999999999996 4333   33332  56779999988877 2 235 9999998754  


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                          ....++.-+...+++   ||++++.-...              ..+            ...+.+.....-|+++..
T Consensus       146 ----~L~~l~e~~~pllk~---~g~~~~~k~~~--------------~~~------------e~~e~~~a~~~~~~~~~~  192 (215)
T COG0357         146 ----SLNVLLELCLPLLKV---GGGFLAYKGLA--------------GKD------------ELPEAEKAILPLGGQVEK  192 (215)
T ss_pred             ----chHHHHHHHHHhccc---CCcchhhhHHh--------------hhh------------hHHHHHHHHHhhcCcEEE
Confidence                122455556666787   77654322110              000            234556667777888888


Q ss_pred             EEEc
Q 022515          282 IIPI  285 (296)
Q Consensus       282 ~~~~  285 (296)
                      +...
T Consensus       193 ~~~~  196 (215)
T COG0357         193 VFSL  196 (215)
T ss_pred             EEEe
Confidence            7765

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.59  E-value=4.5e-05  Score=60.54  Aligned_cols=63  Identities=24%  Similarity=0.474  Sum_probs=47.4

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---CC--c-cceeEeh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---IS--P-ADAVLLK  196 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~p--~-~D~v~~~  196 (296)
                      ..|+|+-||.|..++++++.+.  +++.+|+ |.-++.++.      ..+||+++.+|+++-   ..  . +|+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            3699999999999999999964  7899999 888877765      478999999999872   22  2 7999873

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.58  E-value=0.00018  Score=56.15  Aligned_cols=85  Identities=21%  Similarity=0.301  Sum_probs=60.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHH----CCCCeEEeccc-hhHhhccCC--------CCCCeeEEeccCCCC--CCccce
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKA----FPKLECTCFDL-PHVVNGLDS--------DLANLKYVGGDMFEA--ISPADA  192 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~~--~p~~D~  192 (296)
                      ..+..+|+|+|||.|+++..|+..    .++++++++|. +..++.+.+        ...++++..+++...  ....++
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI  102 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence            356789999999999999999882    27899999999 777776654        236777777776652  224677


Q ss_pred             eEehhhhccCCchHHHHHHHHHHH
Q 022515          193 VLLKWILHDWNDEECVKILKKCKE  216 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~  216 (296)
                      ++.-|.--+.+    ..+|+.+.+
T Consensus       103 ~vgLHaCG~Ls----~~~l~~~~~  122 (141)
T PF13679_consen  103 LVGLHACGDLS----DRALRLFIR  122 (141)
T ss_pred             EEEeecccchH----HHHHHHHHH
Confidence            77755543333    355666655

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.57  E-value=0.00017  Score=65.05  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=44.5

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE  185 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~  185 (296)
                      .+|||++||+|.++..+++...  +++++|. +++++.+++     ..++++|+.+|..+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4799999999999999988863  8999999 899988876     34579999999865

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.54  E-value=0.00097  Score=53.76  Aligned_cols=137  Identities=17%  Similarity=0.134  Sum_probs=84.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCC------------CCCCeeEEeccCCC-CCC-ccce
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDS------------DLANLKYVGGDMFE-AIS-PADA  192 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~------------~~~ri~~~~~D~~~-~~p-~~D~  192 (296)
                      ++++.+|+|+=.|.|.++.-+.... |.-+++.+-..+...-+..            ...+.+.+..+... ..| +.|+
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~  125 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL  125 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence            7889999999999999998777653 3333433332233222111            23344444444444 223 3677


Q ss_pred             eEehhhhccC-----CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          193 VLLKWILHDW-----NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       193 v~~~~vlh~~-----~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                      ++....-|++     ....+.++.+.++++|||   ||.++|.|+.........   ....           -...+..-
T Consensus       126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~dH~a~pG~~~~---dt~~-----------~~ri~~a~  188 (238)
T COG4798         126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVEDHRADPGSGLS---DTIT-----------LHRIDPAV  188 (238)
T ss_pred             cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEEeccccCCCChh---hhhh-----------hcccChHH
Confidence            7664443333     244567899999999999   999888888766543321   1100           11226777


Q ss_pred             HHHHHHhcCCceeE
Q 022515          268 WTKLFTYAGFSDYK  281 (296)
Q Consensus       268 ~~~ll~~aGf~~~~  281 (296)
                      ..+..+++||+...
T Consensus       189 V~a~veaaGFkl~a  202 (238)
T COG4798         189 VIAEVEAAGFKLEA  202 (238)
T ss_pred             HHHHHHhhcceeee
Confidence            88889999998654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.47  E-value=0.00016  Score=59.70  Aligned_cols=91  Identities=21%  Similarity=0.281  Sum_probs=65.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC--CccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI--SPADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~--p~~D~v~~~~v  198 (296)
                      ..++.+|+|.-||.|.+++.+++..+..+++.+|+ |..++..++      ..++|....+|..+-.  ..+|-|++.. 
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l-  177 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL-  177 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence            45678999999999999999999777889999999 988876655      6788999999988732  3489888854 


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEE
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKV  227 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~l  227 (296)
                          |. .+..+|..+.+.+++   ||.+
T Consensus       178 ----p~-~~~~fl~~~~~~~~~---~g~i  198 (200)
T PF02475_consen  178 ----PE-SSLEFLDAALSLLKE---GGII  198 (200)
T ss_dssp             ----TS-SGGGGHHHHHHHEEE---EEEE
T ss_pred             ----hH-HHHHHHHHHHHHhcC---CcEE
Confidence                32 234688889999998   6543

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.45  E-value=0.0011  Score=53.53  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=71.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCCccceeEehhhhccC
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAISPADAVLLKWILHDW  202 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~  202 (296)
                      .-.+++|||+|.|+|-.+++-++.- ...++.-|+ |...+..+-    ..-.|.++..|...+.+.+|+++.+.++++-
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~  155 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH  155 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence            4467899999999999998877763 234555566 555544432    4566888888877755679999999998754


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK  237 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~  237 (296)
                      +  .+.+++. ..+.++.  .|..++|.+...+.-
T Consensus       156 ~--~a~~l~~-~~~~l~~--~g~~vlvgdp~R~~l  185 (218)
T COG3897         156 T--EADRLIP-WKDRLAE--AGAAVLVGDPGRAYL  185 (218)
T ss_pred             h--HHHHHHH-HHHHHHh--CCCEEEEeCCCCCCC
Confidence            4  4446677 5555544  177888877665543

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.44  E-value=0.00028  Score=56.48  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=73.2

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCCccceeEehhhhccCCc
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AISPADAVLLKWILHDWND  204 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d  204 (296)
                      ..+.|+|.|+|-++.--+++  .-+++.++. |.....|.+     ..++++++.||..+ ++..+|+|+|-..=--+=+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~  111 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE  111 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence            57999999999999755554  458899988 888877776     57889999999999 7878999988543222235


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +..+.+++.+.+-|+-   +++++=.+
T Consensus       112 E~qVpV~n~vleFLr~---d~tiiPq~  135 (252)
T COG4076         112 EKQVPVINAVLEFLRY---DPTIIPQE  135 (252)
T ss_pred             ccccHHHHHHHHHhhc---CCccccHH
Confidence            5557889999998887   67776444

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.44  E-value=0.00019  Score=58.13  Aligned_cols=99  Identities=14%  Similarity=0.233  Sum_probs=69.7

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------CCCCeeEEeccCCCCCCc-cceeEehh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFEAISP-ADAVLLKW  197 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~~~p~-~D~v~~~~  197 (296)
                      -.+.|||||-|.+++.|...||+--..++++ -.|.+..+.            ...+|.+...+.+.-.|+ |.--.++-
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk  141 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK  141 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence            4699999999999999999999999999998 677665432            245577777766664444 33333444


Q ss_pred             hhccCCchH-----------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          198 ILHDWNDEE-----------CVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       198 vlh~~~d~~-----------~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      .++.+||+-           ...++.+..-+|++   ||.++.+..+
T Consensus       142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~ytitDv  185 (249)
T KOG3115|consen  142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTITDV  185 (249)
T ss_pred             ceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEEeeH
Confidence            444455442           23567778888898   8988877643

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.44  E-value=0.0032  Score=51.95  Aligned_cols=119  Identities=12%  Similarity=0.129  Sum_probs=88.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC---ccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS---PADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p---~~D~v~~~~vl  199 (296)
                      .+.++.||||-+|.+.+.|.+.+|...++..|+ +.-++.|.+      ..+||+...+|-+.++.   ..|++++..+ 
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM-   94 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM-   94 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence            445699999999999999999999999999999 888877765      78999999999988542   3888887653 


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCce
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSD  279 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~  279 (296)
                         .-.-...||.+-.+-|+.   --++++ -    +.                         -...++++||.+.+|.+
T Consensus        95 ---GG~lI~~ILee~~~~l~~---~~rlIL-Q----Pn-------------------------~~~~~LR~~L~~~~~~I  138 (226)
T COG2384          95 ---GGTLIREILEEGKEKLKG---VERLIL-Q----PN-------------------------IHTYELREWLSANSYEI  138 (226)
T ss_pred             ---cHHHHHHHHHHhhhhhcC---cceEEE-C----CC-------------------------CCHHHHHHHHHhCCcee
Confidence               444566778877777763   113222 1    10                         04567888999999987


Q ss_pred             eEEEEc
Q 022515          280 YKIIPI  285 (296)
Q Consensus       280 ~~~~~~  285 (296)
                      ..=+-+
T Consensus       139 ~~E~il  144 (226)
T COG2384         139 KAETIL  144 (226)
T ss_pred             eeeeee
Confidence            654444

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.42  E-value=0.00032  Score=60.70  Aligned_cols=97  Identities=13%  Similarity=0.256  Sum_probs=68.5

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc-
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP-  189 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~-  189 (296)
                      +++.+++.++  ..+...|+|||+|.|.++..|++..  .++++++. +..++..++   ..++++++.+|+++ +.+. 
T Consensus        18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~   93 (262)
T PF00398_consen   18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL   93 (262)
T ss_dssp             HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence            3456666666  5678999999999999999999996  68999998 887777665   46899999999998 5443 


Q ss_pred             ---cceeEehhhhccCCchHHHHHHHHHHHhccc
Q 022515          190 ---ADAVLLKWILHDWNDEECVKILKKCKEAITS  220 (296)
Q Consensus       190 ---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p  220 (296)
                         -.+.+..+.=+    .-...++.++...-+.
T Consensus        94 ~~~~~~~vv~NlPy----~is~~il~~ll~~~~~  123 (262)
T PF00398_consen   94 LKNQPLLVVGNLPY----NISSPILRKLLELYRF  123 (262)
T ss_dssp             CSSSEEEEEEEETG----TGHHHHHHHHHHHGGG
T ss_pred             hcCCceEEEEEecc----cchHHHHHHHhhcccc
Confidence               23444444333    2334567777664443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.42  E-value=0.00048  Score=59.41  Aligned_cols=97  Identities=14%  Similarity=0.256  Sum_probs=57.8

Q ss_pred             CCCEEEEecCCchHHHH-HHHHHC-CCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCC-C--CCccceeEeh
Q 022515          130 GLNSLVDVGGGIGTAAK-AIAKAF-PKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFE-A--ISPADAVLLK  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~-~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~-~--~p~~D~v~~~  196 (296)
                      .+.+|+=||+|.=-++. .+++.+ ++..++++|+ |+.++.+++       +..+++|+.+|..+ +  ...||+|++.
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            34699999999766554 444443 6788999999 998888866       47999999999876 3  4479999887


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ...- .+.++-.++|.++.+.++|   |.+|++-
T Consensus       200 alVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R  229 (276)
T PF03059_consen  200 ALVG-MDAEPKEEILEHLAKHMAP---GARLVVR  229 (276)
T ss_dssp             TT-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred             hhcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence            6553 2333446899999999999   7766654

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.41  E-value=0.0055  Score=54.24  Aligned_cols=129  Identities=12%  Similarity=0.096  Sum_probs=85.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCC--C-ccceeEehhhhccCCc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAI--S-PADAVLLKWILHDWND  204 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~--p-~~D~v~~~~vlh~~~d  204 (296)
                      +.++.++|||||++|.++..++++  +.+++++|...+..... ..++|.+..+|.+...  + ++|.+++--+.+   +
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P  282 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P  282 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecccC---H
Confidence            457789999999999999999998  67999999755555444 6889999999988832  3 489999966542   2


Q ss_pred             hHHHHHHHHHHHhcccCCCC-cEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc-eeEE
Q 022515          205 EECVKILKKCKEAITSDGKK-GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS-DYKI  282 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~-~~~~  282 (296)
                         .++.+-+.+.+..   | .+-.|+..-.+.....   .....               ..+.+.+.|.++|.. .+++
T Consensus       283 ---~rva~lm~~Wl~~---g~cr~aIfnLKlpmk~r~---~~v~~---------------~l~~i~~~l~~~g~~~~~~~  338 (357)
T PRK11760        283 ---ARVAELMAQWLVN---GWCREAIFNLKLPMKKRY---EEVRQ---------------CLELIEEQLDENGINAQIQA  338 (357)
T ss_pred             ---HHHHHHHHHHHhc---CcccEEEEEEEcCCCCCH---HHHHH---------------HHHHHHHHHHHcCCccceee
Confidence               2556666667765   2 2455665555433211   01000               223466777888873 3455


Q ss_pred             EEcC
Q 022515          283 IPIL  286 (296)
Q Consensus       283 ~~~~  286 (296)
                      .++.
T Consensus       339 khLy  342 (357)
T PRK11760        339 KQLY  342 (357)
T ss_pred             eeee
Confidence            5554

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.00011  Score=64.35  Aligned_cols=101  Identities=21%  Similarity=0.360  Sum_probs=65.6

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCCccceeEehhhhc
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AISPADAVLLKWILH  200 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p~~D~v~~~~vlh  200 (296)
                      +.+|||||.|.|.-+.++-..+|.++ +++++. |..-+....     ...+......|+..   ++|..|.|.+..++|
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~  193 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD  193 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence            45799999999999988888999885 666676 433222111     22233333444443   456556665555554


Q ss_pred             cC----CchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          201 DW----NDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       201 ~~----~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      .+    ........++++...+.|   ||.++|+|.-.
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~---gg~lVivErGt  228 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAP---GGHLVIVERGT  228 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccC---CCeEEEEeCCC
Confidence            43    233344588999999999   99999999643

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.39  E-value=0.00029  Score=63.77  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=44.1

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE  185 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~  185 (296)
                      .+|||++||+|.++..+++...  +++++|. +.+++.+++     ..++++|..+|..+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            5799999999999999988753  8999999 889887775     34589999999865

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.34  E-value=0.00015  Score=55.47  Aligned_cols=68  Identities=19%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC--c-cceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS--P-ADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p--~-~D~v~~~~vl  199 (296)
                      .+..+.|+|||.|.++.  +-.+|. -.++++|+ |+.++.+.+    ..-++++++.|+.+..+  + ||.++++--+
T Consensus        48 Egkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             cCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence            45789999999999994  334444 46899999 999988766    45667899999988433  3 8988885433

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.34  E-value=0.0024  Score=55.12  Aligned_cols=145  Identities=16%  Similarity=0.128  Sum_probs=96.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC--------CCCCeeEEeccCCCCC------Cc-----
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFEAI------SP-----  189 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~~~------p~-----  189 (296)
                      .+...||.+|||-=.....+... +++++.-+|.|++++.-++        ...+.+++..|+..++      .+     
T Consensus        80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            34678999999998887766322 2588899999998875544        3578999999987422      12     


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh-hhhhhhhhhhhhcCc----cccC
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE-TQLFFDMLMMVLLTG----TERD  264 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g----~~rt  264 (296)
                      .-++++-.++.+++.+++.++|+.+.+...|   |+ .+++|.+.+-....  ... ......  ......+    ...+
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs-~l~~d~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~  230 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAP---GS-RLAFDYVRPLDGEW--RAGMRAPVYH--AARGVDGSGLVFGID  230 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCC---Cc-EEEEEeccccchhH--HHHHHHHHHH--hhhcccccccccCCC
Confidence            3477888899999999999999999998877   55 45677665411110  000 000110  0000001    1236


Q ss_pred             HHHHHHHHHhcCCceeEE
Q 022515          265 EKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~  282 (296)
                      .+++.++|++.||+....
T Consensus       231 ~~~~~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       231 RADVAEWLAERGWRASEH  248 (260)
T ss_pred             hhhHHHHHHHCCCeeecC
Confidence            799999999999998765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.32  E-value=0.00078  Score=54.77  Aligned_cols=102  Identities=15%  Similarity=0.184  Sum_probs=65.9

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCe---------EEeccc-hhHhhccCC------CCCCeeEEe
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLE---------CTCFDL-PHVVNGLDS------DLANLKYVG  180 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~------~~~ri~~~~  180 (296)
                      +..++....  ++++..|+|-=||+|.++++-+...++..         +++.|+ +.+++.+++      ..+.|.+..
T Consensus        17 A~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~   94 (179)
T PF01170_consen   17 AAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred             HHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence            334444444  56778999999999999999888776666         899999 899887765      467799999


Q ss_pred             ccCCC-CCC--ccceeEehhhhcc-CCc-hHH----HHHHHHHHHhccc
Q 022515          181 GDMFE-AIS--PADAVLLKWILHD-WND-EEC----VKILKKCKEAITS  220 (296)
Q Consensus       181 ~D~~~-~~p--~~D~v~~~~vlh~-~~d-~~~----~~iL~~~~~aL~p  220 (296)
                      .|+.+ +.+  .+|+|+..--.-. ... .+.    ..+++.+.+.+++
T Consensus        95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            99998 633  4899888432111 111 111    3557777888875

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.0044  Score=52.66  Aligned_cols=120  Identities=16%  Similarity=0.216  Sum_probs=83.0

Q ss_pred             HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------
Q 022515          104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------  171 (296)
Q Consensus       104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------  171 (296)
                      .|...|...++.+    ...++..++  ..++.+|++-|.|+|.++-++++.- |--+..-+|. ..-.+.|.+      
T Consensus        77 LWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg  154 (314)
T KOG2915|consen   77 LWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG  154 (314)
T ss_pred             HhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC
Confidence            3445555444432    334566666  7899999999999999999999975 6678888887 554555544      


Q ss_pred             CCCCeeEEeccCCC-CCC----ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          172 DLANLKYVGGDMFE-AIS----PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       172 ~~~ri~~~~~D~~~-~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      ..+.+++...|... .++    .+|.|++     |+|.+-  ..+-.++.+|+..  ||+++-+..+.
T Consensus       155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~--g~r~csFSPCI  213 (314)
T KOG2915|consen  155 IGDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDE--GGRLCSFSPCI  213 (314)
T ss_pred             CCcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhc--CceEEeccHHH
Confidence            68999999999988 332    3899998     455443  3455666678872  55666555443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.29  E-value=0.00039  Score=56.57  Aligned_cols=105  Identities=18%  Similarity=0.152  Sum_probs=60.0

Q ss_pred             HHHHhcccc-cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCCC---------C
Q 022515          119 VMIHKCKDV-FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEA---------I  187 (296)
Q Consensus       119 ~~~~~~~~~-~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~---------~  187 (296)
                      ++.+.++.. ..+..++||+||++|.++..++++. +..+++++|+..+-     ....+.+..+|+.++         .
T Consensus        11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----~~~~~~~i~~d~~~~~~~~~i~~~~   85 (181)
T PF01728_consen   11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----PLQNVSFIQGDITNPENIKDIRKLL   85 (181)
T ss_dssp             HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----S-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred             HHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----cccceeeeecccchhhHHHhhhhhc
Confidence            455555511 2245899999999999999999987 67899999994431     112334444444331         1


Q ss_pred             ----CccceeEehhhhccC---------CchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          188 ----SPADAVLLKWILHDW---------NDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       188 ----p~~D~v~~~~vlh~~---------~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                          ..+|+|++--....-         .-+-+...|.-+.+.|+|   ||.+++--
T Consensus        86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K~  139 (181)
T PF01728_consen   86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIKV  139 (181)
T ss_dssp             GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEEE
T ss_pred             cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEEe
Confidence                248998885421111         112233445555567898   77765533

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.28  E-value=0.0067  Score=52.25  Aligned_cols=136  Identities=18%  Similarity=0.176  Sum_probs=89.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh-------hc---cCC--------------------------
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV-------NG---LDS--------------------------  171 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~-------~~---a~~--------------------------  171 (296)
                      +...+||-=|||.|.++-+++.+  +..+.+.+. -.|+       ..   ..+                          
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            34579999999999999999998  556666665 3332       11   000                          


Q ss_pred             ---------CCCCeeEEeccCCC--CCC----ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          172 ---------DLANLKYVGGDMFE--AIS----PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       172 ---------~~~ri~~~~~D~~~--~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                               ..++++...|||.+  ..+    .+|+|+..+.+-  .-+...+.|..|.+.|||   ||..+=+-+..-.
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkp---gG~WIN~GPLlyh  207 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKP---GGYWINFGPLLYH  207 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhcc---CCEEEecCCcccc
Confidence                     24578899999988  333    499998876663  344577999999999999   7744333322211


Q ss_pred             CCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEE
Q 022515          237 KKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  284 (296)
                      ....            . ......-+.+.+|+.++.+..||++++-..
T Consensus       208 ~~~~------------~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  208 FEPM------------S-IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             CCCC------------C-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            1100            0 000012456999999999999999876544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.23  E-value=0.00067  Score=52.75  Aligned_cols=53  Identities=21%  Similarity=0.347  Sum_probs=44.2

Q ss_pred             EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC
Q 022515          133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE  185 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~  185 (296)
                      +++|||||.|.++..+++.+|..+++++|. |.+.+.+++     ...++++....+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999999999999999999 888887765     22458887776665

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.21  E-value=0.0029  Score=49.05  Aligned_cols=96  Identities=20%  Similarity=0.355  Sum_probs=65.0

Q ss_pred             EEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCCCC--CC---eeEEeccCCC---CCC---ccceeEehhhhc
Q 022515          134 LVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDSDL--AN---LKYVGGDMFE---AIS---PADAVLLKWILH  200 (296)
Q Consensus       134 vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~--~r---i~~~~~D~~~---~~p---~~D~v~~~~vlh  200 (296)
                      ++|+|||+|... .+....+. ..++++|. +.++..++...  ..   +.+..+|...   ++.   .+|++ .....+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999987 34444333 47888998 77776644311  22   5777777664   332   48999 544444


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      ++.+  ....++++.+.++|   +|.+++.......
T Consensus       130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~~~~~~~  160 (257)
T COG0500         130 HLLP--PAKALRELLRVLKP---GGRLVLSDLLRDG  160 (257)
T ss_pred             hcCC--HHHHHHHHHHhcCC---CcEEEEEeccCCC
Confidence            4443  45789999999999   8888887765443

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.20  E-value=0.00065  Score=57.29  Aligned_cols=99  Identities=19%  Similarity=0.167  Sum_probs=68.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC--ccceeEehhhhcc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS--PADAVLLKWILHD  201 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~  201 (296)
                      ..+.+|+|||||---++.-.....|+.++++.|+ ...++...+    ...+.++...|.....|  .+|+.++.-++|.
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~  183 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC  183 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence            4578999999999999988888888999999999 788877655    67788888889999544  4999999999997


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ....+. ..-.++.+.+.-    -.++|..+
T Consensus       184 le~q~~-g~g~~ll~~~~~----~~~vVSfP  209 (251)
T PF07091_consen  184 LERQRR-GAGLELLDALRS----PHVVVSFP  209 (251)
T ss_dssp             HHHHST-THHHHHHHHSCE----SEEEEEEE
T ss_pred             HHHHhc-chHHHHHHHhCC----CeEEEecc
Confidence            765543 233344455542    35555443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.16  E-value=0.00023  Score=52.51  Aligned_cols=91  Identities=16%  Similarity=0.262  Sum_probs=40.2

Q ss_pred             EEecCCchHHHHHHHHHCCCC---eEEeccc-hh---HhhccCC--CCCCeeEEeccCCCC---CC--ccceeEehhhhc
Q 022515          135 VDVGGGIGTAAKAIAKAFPKL---ECTCFDL-PH---VVNGLDS--DLANLKYVGGDMFEA---IS--PADAVLLKWILH  200 (296)
Q Consensus       135 LDvGgG~G~~~~~l~~~~p~~---~~~~~D~-~~---~~~~a~~--~~~ri~~~~~D~~~~---~p--~~D~v~~~~vlh  200 (296)
                      |+||+..|..+..+++..+..   +++++|. +.   .-+..++  ..++++++.+|..+.   .+  .+|++++-. -|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence            689999999999888876544   6899998 63   3333332  567899999998762   33  589998854 23


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                        ..+....-++.+.+.|+|   ||.|++.|
T Consensus        80 --~~~~~~~dl~~~~~~l~~---ggviv~dD  105 (106)
T PF13578_consen   80 --SYEAVLRDLENALPRLAP---GGVIVFDD  105 (106)
T ss_dssp             ---HHHHHHHHHHHGGGEEE---EEEEEEE-
T ss_pred             --CHHHHHHHHHHHHHHcCC---CeEEEEeC
Confidence              234566789999999999   66666544

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.0049  Score=50.66  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCCC---------C
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEA---------I  187 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~---------~  187 (296)
                      .++.+.+. .++++.+|+|+|+-.|.++..+++.. ++.+++++|+.++-.     ...+.++.+|+..+         .
T Consensus        34 ~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----~~~V~~iq~d~~~~~~~~~l~~~l  107 (205)
T COG0293          34 LELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----IPGVIFLQGDITDEDTLEKLLEAL  107 (205)
T ss_pred             HHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----CCCceEEeeeccCccHHHHHHHHc
Confidence            45666664 47888999999999999999888865 345699999855443     33389999999873         1


Q ss_pred             Cc--cceeEehh---hhccCC------chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          188 SP--ADAVLLKW---ILHDWN------DEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       188 p~--~D~v~~~~---vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +.  +|+|++-.   +--++.      -.-+...+.-+...|+|   ||..++-..
T Consensus       108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K~f  160 (205)
T COG0293         108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAKVF  160 (205)
T ss_pred             CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEEEE
Confidence            22  59888521   111121      11234556667788998   777666554

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.06  E-value=0.0043  Score=57.95  Aligned_cols=102  Identities=18%  Similarity=0.236  Sum_probs=71.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCC-ccceeEe-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AIS-PADAVLL-  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p-~~D~v~~-  195 (296)
                      ..++.+|||+++|.|.=+.+++....+ ..++..|+ +.-+...++     ...++.+...|...   ..+ .||.|++ 
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            457789999999999999999998743 57888998 655544433     34667888888664   233 4899984 


Q ss_pred             ---hh---------hhccCCchHH-------HHHHHHHHHhcccCCCCcEEEEEee
Q 022515          196 ---KW---------ILHDWNDEEC-------VKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       196 ---~~---------vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                         +.         +...|+.++.       .+||.++.+.|+|   ||+|+-...
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYSTC  243 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYSTC  243 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEECC
Confidence               31         2223443322       6899999999999   887755444

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.00  E-value=0.0049  Score=60.79  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=74.1

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC----C--------------------------------------
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF----P--------------------------------------  153 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~----p--------------------------------------  153 (296)
                      ++..++....| .++...++|-.||+|.++++.+...    |                                      
T Consensus       177 lAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~  255 (702)
T PRK11783        177 LAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL  255 (702)
T ss_pred             HHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence            44555555453 1456899999999999999876631    1                                      


Q ss_pred             CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC----ccceeEehhhh-ccCC-chHHHHHHHHHHHhcc
Q 022515          154 KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS----PADAVLLKWIL-HDWN-DEECVKILKKCKEAIT  219 (296)
Q Consensus       154 ~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p----~~D~v~~~~vl-h~~~-d~~~~~iL~~~~~aL~  219 (296)
                      ..+++++|+ +.+++.|++      ..++|++..+|+.+ +.+    .+|+|+++=-. ..+. .++...+.+.+.+.++
T Consensus       256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            236899999 999988876      46789999999987 332    38998885211 1122 2333444444444444


Q ss_pred             ---cCCCCcEEEEEee
Q 022515          220 ---SDGKKGKVIIIDM  232 (296)
Q Consensus       220 ---p~~~gG~lli~e~  232 (296)
                         +   |++++++..
T Consensus       336 ~~~~---g~~~~llt~  348 (702)
T PRK11783        336 QQFG---GWNAALFSS  348 (702)
T ss_pred             HhCC---CCeEEEEeC
Confidence               6   888877654

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.99  E-value=0.016  Score=48.20  Aligned_cols=133  Identities=14%  Similarity=0.134  Sum_probs=86.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhH----hhccCCCCCCeeEEeccCCCCC------CccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHV----VNGLDSDLANLKYVGGDMFEAI------SPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~ri~~~~~D~~~~~------p~~D~v~~  195 (296)
                      +.++.+||-+|..+|....++..-- |.-.+.+++. |..    +..|+ ...+|--+-.|...|.      +..|+++.
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~-~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAK-KRPNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH-HSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhc-cCCceeeeeccCCChHHhhcccccccEEEe
Confidence            6788999999999999999999965 4678888887 643    44454 5677777888888752      35888887


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                      .=. +   .+++.-++.|+..-||+   ||.+++.=-...-+...+|.    .               ...+-.+.|++.
T Consensus       150 DVa-Q---p~Qa~I~~~Na~~fLk~---gG~~~i~iKa~siD~t~~p~----~---------------vf~~e~~~L~~~  203 (229)
T PF01269_consen  150 DVA-Q---PDQARIAALNARHFLKP---GGHLIISIKARSIDSTADPE----E---------------VFAEEVKKLKEE  203 (229)
T ss_dssp             E-S-S---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHH-SSSSHH----H---------------HHHHHHHHHHCT
T ss_pred             cCC-C---hHHHHHHHHHHHhhccC---CcEEEEEEecCcccCcCCHH----H---------------HHHHHHHHHHHc
Confidence            322 1   34566778889899999   89888765433322222111    0               112334567888


Q ss_pred             CCceeEEEEcCC
Q 022515          276 GFSDYKIIPILG  287 (296)
Q Consensus       276 Gf~~~~~~~~~~  287 (296)
                      ||+..+...+..
T Consensus       204 ~~~~~e~i~LeP  215 (229)
T PF01269_consen  204 GFKPLEQITLEP  215 (229)
T ss_dssp             TCEEEEEEE-TT
T ss_pred             CCChheEeccCC
Confidence            999988888754

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.00042  Score=54.10  Aligned_cols=97  Identities=19%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             CCCEEEEecCCchHHH-HHHHHHCCCCeEEeccc-hhHhhccCC--------CCCCeeEEeccCCCC-----CCccceeE
Q 022515          130 GLNSLVDVGGGIGTAA-KAIAKAFPKLECTCFDL-PHVVNGLDS--------DLANLKYVGGDMFEA-----ISPADAVL  194 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~D~~~~-----~p~~D~v~  194 (296)
                      .+.+||++|||--.++ ..++..-|...+.+-|- +..+++.++        ...++..+..+....     +..||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            3478999999965554 45555668888888897 666666554        245555555554442     12499999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +..++.  =++-...+.+.|...|+|   .|+-+++.
T Consensus       109 aADClF--fdE~h~sLvdtIk~lL~p---~g~Al~fs  140 (201)
T KOG3201|consen  109 AADCLF--FDEHHESLVDTIKSLLRP---SGRALLFS  140 (201)
T ss_pred             eccchh--HHHHHHHHHHHHHHHhCc---ccceeEec
Confidence            999884  344556789999999999   67755544

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.91  E-value=0.0063  Score=50.54  Aligned_cols=100  Identities=15%  Similarity=0.208  Sum_probs=74.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC---------Ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI---------SPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~---------p~~  190 (296)
                      .-+.++.+|||.=||..+.+++.+.|. -+++.+|+ +...+.+.+      ....|+++.++..+.+         +.|
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf  150 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF  150 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence            446789999999999999999999875 58999998 666665543      6889999999887631         238


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee-eeCC
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM-IREN  236 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~-~~~~  236 (296)
                      |.+|+-    +|-+.- .....++.+.+++   || ++++|. .++.
T Consensus       151 DfaFvD----adK~nY-~~y~e~~l~Llr~---GG-vi~~DNvl~~G  188 (237)
T KOG1663|consen  151 DFAFVD----ADKDNY-SNYYERLLRLLRV---GG-VIVVDNVLWPG  188 (237)
T ss_pred             eEEEEc----cchHHH-HHHHHHHHhhccc---cc-EEEEeccccCC
Confidence            999884    344443 4889999999999   55 555554 4443

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.90  E-value=0.00096  Score=60.05  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=80.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~  197 (296)
                      ..++..++|+|||.|.....+.. +...+.+++|. +..+.++..      ..++..++.+|+.+ +++  .+|.+.+..
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld  186 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE  186 (364)
T ss_pred             CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence            34455899999999999876655 45778999998 666555443      56677779999998 566  399999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK  237 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~  237 (296)
                      +..|.++..  .++++++++++|   ||....-|.+....
T Consensus       187 ~~~~~~~~~--~~y~Ei~rv~kp---GG~~i~~e~i~~~~  221 (364)
T KOG1269|consen  187 VVCHAPDLE--KVYAEIYRVLKP---GGLFIVKEWIKTAK  221 (364)
T ss_pred             ecccCCcHH--HHHHHHhcccCC---CceEEeHHHHHhhh
Confidence            998888865  789999999999   88877777665543

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=96.89  E-value=0.002  Score=52.56  Aligned_cols=99  Identities=12%  Similarity=0.148  Sum_probs=67.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C----CccceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I----SPADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~----p~~D~v~~  195 (296)
                      .+.++||+=||+|.++.+.+.+. ..+++.+|. +..+...++      ..+++.++.+|.+..   .    ..||+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            46899999999999999988884 348999999 777776655      456799999997651   1    25999998


Q ss_pred             hhhhccCCchH-HHHHHHHHH--HhcccCCCCcEEEEEeeeeCC
Q 022515          196 KWILHDWNDEE-CVKILKKCK--EAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       196 ~~vlh~~~d~~-~~~iL~~~~--~aL~p~~~gG~lli~e~~~~~  236 (296)
                      .=-..   ... ..+++..+.  ..|++    +.++|+|.....
T Consensus       121 DPPY~---~~~~~~~~l~~l~~~~~l~~----~~~ii~E~~~~~  157 (183)
T PF03602_consen  121 DPPYA---KGLYYEELLELLAENNLLNE----DGLIIIEHSKKE  157 (183)
T ss_dssp             --STT---SCHHHHHHHHHHHHTTSEEE----EEEEEEEEETTS
T ss_pred             CCCcc---cchHHHHHHHHHHHCCCCCC----CEEEEEEecCCC
Confidence            42111   112 245677766  67887    778888876653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.89  E-value=0.045  Score=44.70  Aligned_cols=140  Identities=13%  Similarity=0.128  Sum_probs=96.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhH----hhccCCCCCCeeEEeccCCCCC------CccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHV----VNGLDSDLANLKYVGGDMFEAI------SPADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~ri~~~~~D~~~~~------p~~D~v~~~  196 (296)
                      ++++.+||=+|..+|....++..-.++-.+.+++. |.+    +..|+ ...+|--+-+|...|.      +..|+++. 
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~-~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-  151 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE-KRPNIIPILEDARKPEKYRHLVEKVDVIYQ-  151 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH-hCCCceeeecccCCcHHhhhhcccccEEEE-
Confidence            78899999999999999999999888777788876 544    34454 5677777888988753      35788876 


Q ss_pred             hhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          197 WILHDWN-DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       197 ~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                          +.. .+++.-+..|+..-|++   ||.+++.=-...-+.+.+|.    ..               .++-.+.|++.
T Consensus       152 ----DVAQp~Qa~I~~~Na~~FLk~---~G~~~i~iKArSIdvT~dp~----~v---------------f~~ev~kL~~~  205 (231)
T COG1889         152 ----DVAQPNQAEILADNAEFFLKK---GGYVVIAIKARSIDVTADPE----EV---------------FKDEVEKLEEG  205 (231)
T ss_pred             ----ecCCchHHHHHHHHHHHhccc---CCeEEEEEEeecccccCCHH----HH---------------HHHHHHHHHhc
Confidence                333 44556667888999998   88877776555544443221    11               12223567888


Q ss_pred             CCceeEEEEcCC---cceEEEEe
Q 022515          276 GFSDYKIIPILG---LRSLIEVY  295 (296)
Q Consensus       276 Gf~~~~~~~~~~---~~~vi~~~  295 (296)
                      ||++.++..+..   ...+|.++
T Consensus       206 ~f~i~e~~~LePye~DH~~i~~~  228 (231)
T COG1889         206 GFEILEVVDLEPYEKDHALIVAK  228 (231)
T ss_pred             CceeeEEeccCCcccceEEEEEe
Confidence            999988887743   34555543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.87  E-value=0.0022  Score=56.91  Aligned_cols=101  Identities=18%  Similarity=0.242  Sum_probs=66.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHH-------CCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCC-C-CC--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKA-------FPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFE-A-IS--  188 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~-~-~p--  188 (296)
                      ..+..+|+|-.||+|.++.++.+.       .+..+++++|+ +.++..++-       ......+..+|.+. + ..  
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            455678999999999999998874       47789999999 777766543       23335688889876 2 22  


Q ss_pred             -ccceeEehh--hhccCCc-----------------hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          189 -PADAVLLKW--ILHDWND-----------------EECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       189 -~~D~v~~~~--vlh~~~d-----------------~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       .||+|++.=  ....|.+                 ..-..++.++.+.|++   ||++.++-
T Consensus       124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~Il  183 (311)
T PF02384_consen  124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAIIL  183 (311)
T ss_dssp             --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEEe
Confidence             499998732  2221110                 1113578999999999   89876655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.84  E-value=0.003  Score=55.05  Aligned_cols=100  Identities=24%  Similarity=0.401  Sum_probs=73.1

Q ss_pred             CCEEEEecCCchHHHHHHHHHC--------------------CCCeEEeccc-h--hHhhccCC----------------
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAF--------------------PKLECTCFDL-P--HVVNGLDS----------------  171 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~--------------------p~~~~~~~D~-~--~~~~~a~~----------------  171 (296)
                      ..+||.||||.|.-..+++..+                    +.++++.+|+ +  .|++.-..                
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            4799999999998887777665                    2368899998 4  45543211                


Q ss_pred             ------CCCCeeEEeccCCC-CC---------CccceeEehhhhccC---CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          172 ------DLANLKYVGGDMFE-AI---------SPADAVLLKWILHDW---NDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       172 ------~~~ri~~~~~D~~~-~~---------p~~D~v~~~~vlh~~---~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                            ..=+++|...|+.+ +.         +..++|.+-+.++-.   ...+..++|.++...++|   |..|+|+|.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVvDS  243 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVVDS  243 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEEcC
Confidence                  12347889999987 22         236888887777643   345678999999999999   889999985


Q ss_pred             e
Q 022515          233 I  233 (296)
Q Consensus       233 ~  233 (296)
                      -
T Consensus       244 p  244 (315)
T PF11312_consen  244 P  244 (315)
T ss_pred             C
Confidence            3

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.0051  Score=51.59  Aligned_cols=101  Identities=19%  Similarity=0.255  Sum_probs=77.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCC----CeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---CCc---cc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPK----LECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---ISP---AD  191 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~p~---~D  191 (296)
                      -+..+++|+|.|+-.=+..|+..+..    ++++-+|+ ..++....+      ..-.+.-+++|+..+   .|+   ==
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl  156 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL  156 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence            35679999999999998888887765    79999999 666654322      344566678888762   343   23


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .+++.+.|-+++.++|..+|.+++.+|.|   |-.+++--.
T Consensus       157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvD  194 (321)
T COG4301         157 FVFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVD  194 (321)
T ss_pred             EEEecccccCCChHHHHHHHHHHHhcCCC---cceEEEecc
Confidence            56778899999999999999999999999   777776543

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.80  E-value=0.0052  Score=53.99  Aligned_cols=146  Identities=18%  Similarity=0.145  Sum_probs=93.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCC-CCeEEeccchhHhhccCC--------CCCCeeEEeccCCC-CCC------ccc--
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFE-AIS------PAD--  191 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~-~~p------~~D--  191 (296)
                      +...||-+|||-=.-+..+  .+| ++++.-+|+|++++.-++        ...+.++++.|+++ +++      +||  
T Consensus        92 g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          92 GIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             cccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            4689999999965554332  233 578888899999986544        23489999999995 543      244  


Q ss_pred             ---eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cC---ccccC
Q 022515          192 ---AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LT---GTERD  264 (296)
Q Consensus       192 ---~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---g~~rt  264 (296)
                         ++++-.++.+++.++..++|++|.....|   |..++. +...+...... ............... .+   -....
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~  244 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVAF-DYSLPGSLRDR-LRRPAARKTMRGEDLDRGELVYFGDD  244 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEEE-eccccHHHHhc-ccchhhhhhccccccccccceeccCC
Confidence               78889999999999999999999999998   555544 43211111100 000000111100000 01   11236


Q ss_pred             HHHHHHHHHhcCCceeEE
Q 022515          265 EKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~  282 (296)
                      ..+++.++.+.||.....
T Consensus       245 ~~e~~~~l~~~g~~~~~~  262 (297)
T COG3315         245 PAEIETWLAERGWRSTLN  262 (297)
T ss_pred             HHHHHHHHHhcCEEEEec
Confidence            799999999999987766

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.79  E-value=0.0069  Score=55.96  Aligned_cols=93  Identities=22%  Similarity=0.318  Sum_probs=68.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC--C-CC---ccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE--A-IS---PADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~--~-~p---~~D~v~~  195 (296)
                      ..+..+++|+=||.|.++..|+++  ..+++++++ ++.++.|++     ..++++|+.+|..+  + ..   .+|+|++
T Consensus       291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            456789999999999999999965  568999999 999988876     45669999999877  2 21   4799988


Q ss_pred             hhhhccCCchHHH-HHHHHHHHhcccCCCCcEEEEEe
Q 022515          196 KWILHDWNDEECV-KILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       196 ~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                           |-|...+. .+++.+.+. +|   -..++|.-
T Consensus       369 -----DPPR~G~~~~~lk~l~~~-~p---~~IvYVSC  396 (432)
T COG2265         369 -----DPPRAGADREVLKQLAKL-KP---KRIVYVSC  396 (432)
T ss_pred             -----CCCCCCCCHHHHHHHHhc-CC---CcEEEEeC
Confidence                 45544444 556665554 55   35565543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=96.70  E-value=0.0038  Score=56.67  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=74.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCC-------CCCCeeEEeccCCCC----C--C-cccee
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEA----I--S-PADAV  193 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~----~--p-~~D~v  193 (296)
                      .+.+|||+=|=||.++.+.+..  +. ++|.+|+ ...++.|++       ..+++.|+.+|.++-    .  + .||+|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI  294 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI  294 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence            3789999999999999887776  55 8999999 889988887       367899999999872    1  2 59999


Q ss_pred             Eeh--------hhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          194 LLK--------WILHDWN-DEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       194 ~~~--------~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ++-        ...  |. ..+-..++..+.+.|+|   ||.++++..
T Consensus       295 ilDPPsF~r~k~~~--~~~~rdy~~l~~~~~~iL~p---gG~l~~~s~  337 (393)
T COG1092         295 ILDPPSFARSKKQE--FSAQRDYKDLNDLALRLLAP---GGTLVTSSC  337 (393)
T ss_pred             EECCcccccCcccc--hhHHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence            981        111  22 22335788999999999   888877664

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.69  E-value=0.0048  Score=55.98  Aligned_cols=92  Identities=13%  Similarity=0.181  Sum_probs=70.4

Q ss_pred             CEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC--C--CccceeEehhhhc
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA--I--SPADAVLLKWILH  200 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~--~--p~~D~v~~~~vlh  200 (296)
                      .+|||.-||+|..++..+.+.++ -+++..|+ |..++.+++     ...++++..+|...-  .  ..||+|.+.= . 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence            58999999999999999998654 47999999 888887765     234688888888762  1  3599998843 2 


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                        ..  ...++..+.+++++   ||.|++.-+
T Consensus       124 --Gs--~~~fld~al~~~~~---~glL~vTaT  148 (374)
T TIGR00308       124 --GT--PAPFVDSAIQASAE---RGLLLVTAT  148 (374)
T ss_pred             --CC--cHHHHHHHHHhccc---CCEEEEEec
Confidence              11  13678888888998   888888843

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.58  E-value=0.0074  Score=57.56  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=47.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCC--------CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC--------C
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPK--------LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA--------I  187 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~--------~  187 (296)
                      ...+|+|.|||+|.++.++++..+.        ..++++|+ +..+..++.     ....+++..+|+...        .
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            4569999999999999999887642        56899999 888776654     112355566665431        1


Q ss_pred             CccceeEe
Q 022515          188 SPADAVLL  195 (296)
Q Consensus       188 p~~D~v~~  195 (296)
                      +.||+|+.
T Consensus       111 ~~fD~IIg  118 (524)
T TIGR02987       111 DLFDIVIT  118 (524)
T ss_pred             CcccEEEe
Confidence            35899877

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.45  E-value=0.0088  Score=52.51  Aligned_cols=68  Identities=12%  Similarity=0.097  Sum_probs=57.1

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE  185 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~  185 (296)
                      +.+++++.+.  ..++..+||.=+|.|..+..++++.|+.+++++|. |.+++.+++    ..+|++++.++|.+
T Consensus         8 ll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         8 LLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             hHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            3456777766  56778999999999999999999988899999999 999988876    34689999988875

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.45  E-value=0.07  Score=46.50  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=85.5

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccchhH-------hhccCC--------------------------------
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHV-------VNGLDS--------------------------------  171 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~-------~~~a~~--------------------------------  171 (296)
                      ..+||-=|||.|.++..|+...+.+++-=+- --|       +...+.                                
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfS-y~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFS-YFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHH-HHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            5689999999999999999887655432111 000       100000                                


Q ss_pred             ------CCCCeeEEeccCCC--CCC----ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC
Q 022515          172 ------DLANLKYVGGDMFE--AIS----PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG  239 (296)
Q Consensus       172 ------~~~ri~~~~~D~~~--~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~  239 (296)
                            ..+..+.-+|||.+  ..+    .||+|+..+.+-  .-....+.|..|...|+|   ||..+=+-+..-.-..
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNlGPLlYHF~d  304 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINLGPLLYHFED  304 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEeccceeeeccC
Confidence                  12334556689987  222    399998876553  344567899999999999   7776655544332221


Q ss_pred             CCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          240 DDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      ..         +.   ..-.+-+.+.+++..+.+.-||++.+-..+
T Consensus       305 ~~---------g~---~~~~siEls~edl~~v~~~~GF~~~ke~~I  338 (369)
T KOG2798|consen  305 TH---------GV---ENEMSIELSLEDLKRVASHRGFEVEKERGI  338 (369)
T ss_pred             CC---------CC---cccccccccHHHHHHHHHhcCcEEEEeeee
Confidence            10         00   001134569999999999999998776543

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.29  E-value=0.031  Score=46.06  Aligned_cols=100  Identities=14%  Similarity=0.154  Sum_probs=73.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC----CCCCeeEEeccCCC---CCC--ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS----DLANLKYVGGDMFE---AIS--PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~D~~~---~~p--~~D~v~~~~v  198 (296)
                      ..+++|||.||=|-|-....+.++.|..+.++---|.|.++.+.    ..+++-...|-..+   .+|  .||-|+..-.
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy  178 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY  178 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence            36789999999999999998888888777666555999988876    46677777764443   344  3888777443


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      -.  ..++...+.+.+.+.|||   +|.+-.+..
T Consensus       179 ~e--~yEdl~~~hqh~~rLLkP---~gv~SyfNg  207 (271)
T KOG1709|consen  179 SE--LYEDLRHFHQHVVRLLKP---EGVFSYFNG  207 (271)
T ss_pred             hh--HHHHHHHHHHHHhhhcCC---CceEEEecC
Confidence            22  135677889999999999   777655554

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.11  E-value=0.011  Score=51.81  Aligned_cols=68  Identities=16%  Similarity=0.150  Sum_probs=52.7

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE  185 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~  185 (296)
                      +..++++.+.  ..+...++|.=-|.|..+.++++++|+.+++++|. |.+++.+++    ..+|+.++.++|.+
T Consensus         8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            3466777776  67788999999999999999999999999999999 999988765    46899999998765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.07  E-value=0.022  Score=46.93  Aligned_cols=100  Identities=14%  Similarity=0.175  Sum_probs=52.7

Q ss_pred             CCCEEEEecCCchHHH---HHHHHHC-CCCeEEeccc-hh-HhhccCC---CCCCeeEEeccCCCC-----C------Cc
Q 022515          130 GLNSLVDVGGGIGTAA---KAIAKAF-PKLECTCFDL-PH-VVNGLDS---DLANLKYVGGDMFEA-----I------SP  189 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~---~~l~~~~-p~~~~~~~D~-~~-~~~~a~~---~~~ri~~~~~D~~~~-----~------p~  189 (296)
                      ++.+|+++|--.|..+   ..+++.+ +..+++++|+ .. .-..+.+   ..+||+++.||-.++     .      +.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            4579999996555444   4556666 7789999998 32 2222322   569999999998762     1      11


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      ..+|+. ..-|...  .+.+.|+.....+++   |+.++|-|....
T Consensus       112 ~vlVil-Ds~H~~~--hvl~eL~~y~plv~~---G~Y~IVeDt~~~  151 (206)
T PF04989_consen  112 PVLVIL-DSSHTHE--HVLAELEAYAPLVSP---GSYLIVEDTIIE  151 (206)
T ss_dssp             SEEEEE-SS----S--SHHHHHHHHHHT--T---T-EEEETSHHHH
T ss_pred             ceEEEE-CCCccHH--HHHHHHHHhCccCCC---CCEEEEEecccc
Confidence            234444 3334333  356788889999998   888777776543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=95.87  E-value=0.059  Score=48.07  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=77.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--CC-CccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--AI-SPADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~~-p~~D~v~~~~v  198 (296)
                      ..+.+|||.=+|.|.+++.+++.- ..+++.+|+ |..++..++      ..++|..+.||...  +. +.+|=|++...
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            357899999999999999998874 334999999 998877665      56779999999988  23 45999999753


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK  237 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~  237 (296)
                      -      .+.+++-.+.+.+++   ||.+...+....+.
T Consensus       266 ~------~a~~fl~~A~~~~k~---~g~iHyy~~~~e~~  295 (341)
T COG2520         266 K------SAHEFLPLALELLKD---GGIIHYYEFVPEDD  295 (341)
T ss_pred             C------cchhhHHHHHHHhhc---CcEEEEEeccchhh
Confidence            2      234678888889998   88888877665443

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.85  E-value=0.046  Score=44.07  Aligned_cols=70  Identities=19%  Similarity=0.307  Sum_probs=47.4

Q ss_pred             HHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEec-cCCCC---------CC
Q 022515          120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGG-DMFEA---------IS  188 (296)
Q Consensus       120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~-D~~~~---------~p  188 (296)
                      +-+.|. .+++..+|||+||..|.++.-..++. |+..+.++|+-++..     ....++..+ |+.++         .|
T Consensus        60 indKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-----~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   60 INDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-----PEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             ehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-----CCCcccccccccCCHHHHHHHHHhCC
Confidence            334454 35778999999999999998776665 999999999844332     222344444 55543         24


Q ss_pred             c--cceeEe
Q 022515          189 P--ADAVLL  195 (296)
Q Consensus       189 ~--~D~v~~  195 (296)
                      +  .|+|++
T Consensus       134 ~r~VdvVlS  142 (232)
T KOG4589|consen  134 NRPVDVVLS  142 (232)
T ss_pred             CCcccEEEe
Confidence            3  687766

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=95.80  E-value=0.025  Score=49.33  Aligned_cols=98  Identities=15%  Similarity=0.266  Sum_probs=68.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCCC------CCccceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEA------ISPADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~------~p~~D~v~~  195 (296)
                      .+.+|||+=|=||.++.+.+.. ...+++.+|. ...++.+++       ..++++|+.+|.++.      ...||+|++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            4679999999999999876654 2347999999 888888876       347899999999872      135999988


Q ss_pred             h---hhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          196 K---WILHDWN-DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       196 ~---~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      -   +.=..+. ..+-.++++++.+.|+|   ||.|+.+.
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~s  238 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTCS  238 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEEc
Confidence            1   1100111 12335789999999999   77765544

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.58  E-value=0.14  Score=45.49  Aligned_cols=100  Identities=14%  Similarity=0.150  Sum_probs=73.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEec-cCCC-CCCc--cceeEeh-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGG-DMFE-AISP--ADAVLLK-  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~-D~~~-~~p~--~D~v~~~-  196 (296)
                      ..++..|||==||||.++++....  ++++++.|+ ..|+..|+.     ......+... |... ++++  +|.|+.- 
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP  272 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP  272 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence            456779999999999999987776  889999999 889988876     2344545544 8887 7764  8888761 


Q ss_pred             -----hhhccCC-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          197 -----WILHDWN-DEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       197 -----~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                           .-..--. ++--.++|..+.+.|++   ||++++.-.
T Consensus       273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~~p  311 (347)
T COG1041         273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFAAP  311 (347)
T ss_pred             CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEecC
Confidence                 1111111 23345889999999999   898877553

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.57  E-value=0.31  Score=44.36  Aligned_cols=74  Identities=20%  Similarity=0.200  Sum_probs=47.2

Q ss_pred             CCCEEEEecCCchHHHHHHHH--------H-------CCCCeEEeccchhH----h-hccCC--------------CCCC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAK--------A-------FPKLECTCFDLPHV----V-NGLDS--------------DLAN  175 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~--------~-------~p~~~~~~~D~~~~----~-~~a~~--------------~~~r  175 (296)
                      +..+|+|+|||+|..+..+..        +       -|..++..-|+|.-    + .....              ...+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            467999999999977654422        2       25678888888621    1 11100              0112


Q ss_pred             ---eeEEeccCCC-CCC--ccceeEehhhhccCC
Q 022515          176 ---LKYVGGDMFE-AIS--PADAVLLKWILHDWN  203 (296)
Q Consensus       176 ---i~~~~~D~~~-~~p--~~D~v~~~~vlh~~~  203 (296)
                         +.-++|.|+. -+|  ..+++++++.||..+
T Consensus       143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS  176 (386)
T PLN02668        143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLS  176 (386)
T ss_pred             ceEEEecCccccccccCCCceEEEEeeccceecc
Confidence               2335688888 466  389999999999765

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.51  E-value=0.014  Score=45.41  Aligned_cols=41  Identities=24%  Similarity=0.375  Sum_probs=37.3

Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +.|+|++.+|+.|+..++-...++.+++.|||   ||+|-+.-+
T Consensus        47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriAvP   87 (185)
T COG4627          47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIAVP   87 (185)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEEcC
Confidence            48999999999999988889999999999999   999887653

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.46  E-value=0.014  Score=42.61  Aligned_cols=32  Identities=19%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL  162 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~  162 (296)
                      .+....+|||||.|.+.--|.+.  +.++.++|.
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~   88 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA   88 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence            35678999999999998777666  778899994

; GO: 0008168 methyltransferase activity

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.30  E-value=0.25  Score=41.70  Aligned_cols=93  Identities=13%  Similarity=0.073  Sum_probs=54.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC-----ccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS-----PADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p-----~~D~v~~~~vl  199 (296)
                      .+++||-|| -.=..+++++...+..+++++|+ +..++..++    ..-.|+.+..|+.+++|     .||+++..=. 
T Consensus        44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-  121 (243)
T PF01861_consen   44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP-  121 (243)
T ss_dssp             TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred             cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence            467899998 44445566666667789999999 777765543    33349999999999766     3999988321 


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                        ++.+...-++.+...+|+.  +|+..+
T Consensus       122 --yT~~G~~LFlsRgi~~Lk~--~g~~gy  146 (243)
T PF01861_consen  122 --YTPEGLKLFLSRGIEALKG--EGCAGY  146 (243)
T ss_dssp             --SSHHHHHHHHHHHHHTB-S--TT-EEE
T ss_pred             --CCHHHHHHHHHHHHHHhCC--CCceEE
Confidence              3345667889999999997  354433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.28  E-value=0.045  Score=49.30  Aligned_cols=79  Identities=14%  Similarity=0.128  Sum_probs=60.5

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCC---------------------------------------e
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKL---------------------------------------E  156 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~---------------------------------------~  156 (296)
                      ++..++..-.  +.+...++|==||+|.++++.+...+++                                       .
T Consensus       179 LAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         179 LAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            3445554445  4555799999999999999988876531                                       2


Q ss_pred             EEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEeh
Q 022515          157 CTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLK  196 (296)
Q Consensus       157 ~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~  196 (296)
                      ++++|+ +.+++.|+.      ..+.|+|..+|+.. ..+  .+|+++++
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N  306 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN  306 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence            679999 999988765      68999999999987 434  58999884

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=95.26  E-value=0.37  Score=43.23  Aligned_cols=76  Identities=17%  Similarity=0.186  Sum_probs=42.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHH--------C--------CCCeEEeccchhH--hhccCC---------CCCC--eeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKA--------F--------PKLECTCFDLPHV--VNGLDS---------DLAN--LKY  178 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~--------~--------p~~~~~~~D~~~~--~~~a~~---------~~~r--i~~  178 (296)
                      ..+.-+|+|+||.+|..+..+...        +        |..+++.-|+|.-  -...+.         ....  +.-
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            345679999999999998876542        1        3356777787531  111111         1122  333


Q ss_pred             EeccCCC-CCC--ccceeEehhhhccCC
Q 022515          179 VGGDMFE-AIS--PADAVLLKWILHDWN  203 (296)
Q Consensus       179 ~~~D~~~-~~p--~~D~v~~~~vlh~~~  203 (296)
                      ++|.|+. -+|  ..|++++++.||..+
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS  121 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLS  121 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcc
Confidence            6789998 456  389999999999764

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.22  Score=43.40  Aligned_cols=147  Identities=16%  Similarity=0.216  Sum_probs=98.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccchhHhhccCC---------------------------CCCCeeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDLPHVVNGLDS---------------------------DLANLKY  178 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~---------------------------~~~ri~~  178 (296)
                      ..+...|+-+|||.-.+...|...+  +.++++-+|-|++++.--.                           ...|...
T Consensus        85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~  164 (335)
T KOG2918|consen   85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL  164 (335)
T ss_pred             cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence            4567899999999999999999988  7889999999777643211                           1244445


Q ss_pred             EeccCCC--CC-----C-----c-cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh
Q 022515          179 VGGDMFE--AI-----S-----P-ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE  245 (296)
Q Consensus       179 ~~~D~~~--~~-----p-----~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~  245 (296)
                      ...|..+  .+     +     + .-+++.-=+|-.++.+++..+++.+....+.    +..++.|.+.+.+.    +  
T Consensus       165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~YEQi~~~D~----F--  234 (335)
T KOG2918|consen  165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNYEQINPNDR----F--  234 (335)
T ss_pred             eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEEeccCCCCh----H--
Confidence            5555553  11     0     1 2344455567778888889999999998885    88999998885432    2  


Q ss_pred             hhhhhhhhhhhh---cCc--cccCHHHHHHHHHhcCCceeEEEEc
Q 022515          246 TQLFFDMLMMVL---LTG--TERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       246 ~~~~~~~~~~~~---~~g--~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                       ...+--+.-..   ..|  ...|.+..++-+.++||+.+.+..+
T Consensus       235 -g~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm  278 (335)
T KOG2918|consen  235 -GKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM  278 (335)
T ss_pred             -HHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence             21111111100   012  2338888999999999998887654

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.12  E-value=0.15  Score=43.32  Aligned_cols=97  Identities=16%  Similarity=0.122  Sum_probs=60.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-----------CCCCeeEEeccCCCC------CCc-cc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-----------DLANLKYVGGDMFEA------ISP-AD  191 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~~~ri~~~~~D~~~~------~p~-~D  191 (296)
                      ...+||++|+|+|..++. +......+++.-|.|.+++.-+.           .+..+.+...+-..+      .|. +|
T Consensus        86 ~~~~vlELGsGtglvG~~-aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGIL-AALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHH-HHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            456899999999955554 44445788999998766654321           234566655444431      234 89


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +++.+.++++-...  ..+++-++..|..   ++.+++.-.
T Consensus       165 lilasDvvy~~~~~--e~Lv~tla~ll~~---~~~i~l~~~  200 (248)
T KOG2793|consen  165 LILASDVVYEEESF--EGLVKTLAFLLAK---DGTIFLAYP  200 (248)
T ss_pred             EEEEeeeeecCCcc--hhHHHHHHHHHhc---CCeEEEEEe
Confidence            99999998754322  2445555556776   664444443

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.86  E-value=0.067  Score=41.40  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=69.7

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCcc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPA  190 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~  190 (296)
                      +++..+.  ..+.++.+|+|.|.|....+.++.. -...+++++ |-.+..++-      ...+..|...|+++ ++.+|
T Consensus        63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy  139 (199)
T KOG4058|consen   63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY  139 (199)
T ss_pred             HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence            3444444  4556899999999999988777664 457899999 777665542      57889999999999 77777


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      ..++++.+=..++|     +-.+++.-|+.   +.+++..-+-.|.
T Consensus       140 ~~vviFgaes~m~d-----Le~KL~~E~p~---nt~vvacRFPLP~  177 (199)
T KOG4058|consen  140 RNVVIFGAESVMPD-----LEDKLRTELPA---NTRVVACRFPLPT  177 (199)
T ss_pred             ceEEEeehHHHHhh-----hHHHHHhhCcC---CCeEEEEecCCCc
Confidence            65554332221222     22344444565   6777766654443

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=94.78  E-value=0.16  Score=41.27  Aligned_cols=100  Identities=13%  Similarity=0.060  Sum_probs=66.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C----CCccceeEeh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A----ISPADAVLLK  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~----~p~~D~v~~~  196 (296)
                      .+.++||+=+|+|.++.+-+.+. ..+++.+|. ..++...++      ...+..+...|...  .    .+.||+|++-
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            46799999999999999999985 458899998 666665554      35888888888774  1    1239999994


Q ss_pred             hhhccCCchHHHHHHHH--HHHhcccCCCCcEEEEEeeeeC
Q 022515          197 WILHDWNDEECVKILKK--CKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~--~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      =-.+ +.--+....+..  -...|+|    +.++++|.-..
T Consensus       122 PPy~-~~l~~~~~~~~~~~~~~~L~~----~~~iv~E~~~~  157 (187)
T COG0742         122 PPYA-KGLLDKELALLLLEENGWLKP----GALIVVEHDKD  157 (187)
T ss_pred             CCCc-cchhhHHHHHHHHHhcCCcCC----CcEEEEEeCCC
Confidence            3333 111111112222  3456888    56677776544

>KOG2730 consensus Methylase [General function prediction only]

Probab=94.76  E-value=0.017  Score=47.66  Aligned_cols=54  Identities=19%  Similarity=0.309  Sum_probs=44.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE  185 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~  185 (296)
                      ....|+|.-||-|...+.++.++|  .++.+|+ |--+..|+.      ..+||+|++||+++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            557899999999999999999977  6777777 766666654      46799999999987

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=94.74  E-value=0.071  Score=33.79  Aligned_cols=43  Identities=35%  Similarity=0.399  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515           28 NSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW   74 (296)
Q Consensus        28 ~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~   74 (296)
                      .-.+|.+|.++|-||.=    ...|+.|||+.+|+++..+..+|+..
T Consensus         5 Q~e~L~~A~~~GYfd~P----R~~tl~elA~~lgis~st~~~~LRra   47 (53)
T PF04967_consen    5 QREILKAAYELGYFDVP----RRITLEELAEELGISKSTVSEHLRRA   47 (53)
T ss_pred             HHHHHHHHHHcCCCCCC----CcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence            45689999999999954    46999999999999998887766654

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=94.73  E-value=0.089  Score=45.74  Aligned_cols=68  Identities=16%  Similarity=0.158  Sum_probs=57.9

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCC----CCCCeeEEeccCCC
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDS----DLANLKYVGGDMFE  185 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~  185 (296)
                      +.+++++.+.  ..+.+..+|.==|.|..+.++++++|... .+++|. |.+++.|++    ..+|++++.++|.+
T Consensus        11 Ll~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          11 LLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            3466777777  66779999999999999999999998764 999999 999999987    37899999988764

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=94.72  E-value=0.21  Score=46.25  Aligned_cols=98  Identities=20%  Similarity=0.266  Sum_probs=72.1

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhccCC
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWN  203 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~  203 (296)
                      -+++-+|||.-.++.++-+.. .-.++.+|. +-+++....    ...-+.++..|+.. .++  .||+++....++++-
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence            389999999999888776642 235677787 444444332    45668888899888 555  599999999998853


Q ss_pred             -chHH-------HHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          204 -DEEC-------VKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       204 -d~~~-------~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                       ++++       -..+..++++++|   ||+.+.+...
T Consensus       129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~svtl~  163 (482)
T KOG2352|consen  129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISVTLV  163 (482)
T ss_pred             CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEEEee
Confidence             3332       2458899999999   8998887763

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.53  E-value=0.18  Score=44.91  Aligned_cols=93  Identities=20%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             cCCCCEEEEecC-CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec---cCCCCCCc-cceeEehhhhcc
Q 022515          128 FEGLNSLVDVGG-GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG---DMFEAISP-ADAVLLKWILHD  201 (296)
Q Consensus       128 ~~~~~~vLDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~---D~~~~~p~-~D~v~~~~vlh~  201 (296)
                      ..++.+|+=+|. |.|+++..+++..- .+++++|. ++-.+.|+++... .++..   |..+...+ +|+++..-. . 
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd-~~i~~~~~~~~~~~~~~~d~ii~tv~-~-  239 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD-HVINSSDSDALEAVKEIADAIIDTVG-P-  239 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc-EEEEcCCchhhHHhHhhCcEEEECCC-h-
Confidence            567788888884 67899999999774 99999999 8888888753222 33332   23333332 888887543 1 


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                             ..+....++|++   ||+++++-...
T Consensus       240 -------~~~~~~l~~l~~---~G~~v~vG~~~  262 (339)
T COG1064         240 -------ATLEPSLKALRR---GGTLVLVGLPG  262 (339)
T ss_pred             -------hhHHHHHHHHhc---CCEEEEECCCC
Confidence                   346677788898   99999988663

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=94.25  E-value=0.081  Score=43.05  Aligned_cols=85  Identities=21%  Similarity=0.302  Sum_probs=61.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC----C----CCCeeEEeccCCC-CC----C--c-----
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS----D----LANLKYVGGDMFE-AI----S--P-----  189 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----~~ri~~~~~D~~~-~~----p--~-----  189 (296)
                      +...|+-+|||-=.....+....++.+++-+|+|++++.-++    .    ..+.+++..|+.+ ++    .  +     
T Consensus        78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~  157 (183)
T PF04072_consen   78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR  157 (183)
T ss_dssp             TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred             CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence            445999999999999999998888899999999998876655    1    2336789999996 21    1  2     


Q ss_pred             cceeEehhhhccCCchHHHHHHHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKC  214 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~  214 (296)
                      .-++++-.++.+++.+++..+|+.+
T Consensus       158 ptl~i~Egvl~Yl~~~~~~~ll~~i  182 (183)
T PF04072_consen  158 PTLFIAEGVLMYLSPEQVDALLRAI  182 (183)
T ss_dssp             EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred             CeEEEEcchhhcCCHHHHHHHHHHh
Confidence            3477888889999999988888876

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=94.19  E-value=0.041  Score=49.72  Aligned_cols=49  Identities=20%  Similarity=0.399  Sum_probs=38.4

Q ss_pred             EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccC
Q 022515          133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDM  183 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~  183 (296)
                      +|||+=||.|.++..|++..  -+++++|. +++++.|++     ..++++|..++.
T Consensus       199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            89999999999999998875  48999999 899988876     567899987654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=94.12  E-value=0.5  Score=43.08  Aligned_cols=113  Identities=17%  Similarity=0.214  Sum_probs=65.3

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHH----HC---CCCeEEeccchh-----HhhccCC--------CCCCe
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAK----AF---PKLECTCFDLPH-----VVNGLDS--------DLANL  176 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~----~~---p~~~~~~~D~~~-----~~~~a~~--------~~~ri  176 (296)
                      .+.|++.+.  -...-+|+|+|.|.|..=..|.+    +.   |.+++|+++.|.     .++.+.+        ..-..
T Consensus        99 NqaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f  176 (374)
T PF03514_consen   99 NQAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF  176 (374)
T ss_pred             hHHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE
Confidence            457777777  55678999999999965444444    32   778999999832     2222221        23334


Q ss_pred             eEEec--cCCCCC--------C-ccceeEehhhhccCCch------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          177 KYVGG--DMFEAI--------S-PADAVLLKWILHDWNDE------ECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       177 ~~~~~--D~~~~~--------p-~~D~v~~~~vlh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      +|...  +-.++.        + .+=+|-+..-||+..++      ....+|+.+ +.|+|    -.++++|.-.+.
T Consensus       177 ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P----~vvv~~E~ea~~  248 (374)
T PF03514_consen  177 EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNP----KVVVLVEQEADH  248 (374)
T ss_pred             EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCC----CEEEEEeecCCC
Confidence            44442  211111        1 12234456667888633      233567655 57898    577777765443

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.07  E-value=0.1  Score=46.83  Aligned_cols=109  Identities=13%  Similarity=0.256  Sum_probs=73.4

Q ss_pred             HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc---hhHhhccCC------------CCCCeeEEeccCC
Q 022515          120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL---PHVVNGLDS------------DLANLKYVGGDMF  184 (296)
Q Consensus       120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~------------~~~ri~~~~~D~~  184 (296)
                      +.+.+.  ..+.....|+|+|.|.....++.....-+-+|+.+   |.-+....+            ....++.+.|+|.
T Consensus       184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~  261 (419)
T KOG3924|consen  184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL  261 (419)
T ss_pred             HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence            344444  66778999999999999987777554444555554   332222211            2466888999998


Q ss_pred             CC------CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          185 EA------ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       185 ~~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      .+      .+.++++++.++..  +++...+ +.++..-+++   |-+|+-.+...+.
T Consensus       262 ~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~---gtrIiS~~~L~~r  313 (419)
T KOG3924|consen  262 DPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCKD---GTRIISSKPLVPR  313 (419)
T ss_pred             CHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCCC---cceEecccccccc
Confidence            84      24699999999874  4443332 4467777788   8898888877763

>PRK10742 putative methyltransferase; Provisional

Probab=93.78  E-value=0.11  Score=44.08  Aligned_cols=74  Identities=20%  Similarity=0.284  Sum_probs=53.6

Q ss_pred             HHHHHhcccccCCCC--EEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------CCCCeeEEe
Q 022515          118 SVMIHKCKDVFEGLN--SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------DLANLKYVG  180 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~--~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~  180 (296)
                      +.++++..  ++++.  +|||.=+|+|..+..++.+  +++++.+|. |.+....+.              ...|++++.
T Consensus        76 ~~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             cHHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            45666665  56655  9999999999999999988  778999998 655543222              125788888


Q ss_pred             ccCCC---CCC-ccceeEe
Q 022515          181 GDMFE---AIS-PADAVLL  195 (296)
Q Consensus       181 ~D~~~---~~p-~~D~v~~  195 (296)
                      +|..+   ..+ .||+|++
T Consensus       152 ~da~~~L~~~~~~fDVVYl  170 (250)
T PRK10742        152 ASSLTALTDITPRPQVVYL  170 (250)
T ss_pred             CcHHHHHhhCCCCCcEEEE
Confidence            88765   222 4888876

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=93.56  E-value=0.031  Score=36.59  Aligned_cols=49  Identities=24%  Similarity=0.322  Sum_probs=38.5

Q ss_pred             HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +++|.--.++.|+..|.. ++|.|+.|||+.+|+++..+.++|......|
T Consensus         4 ~~aL~~p~R~~Il~~L~~-~~~~t~~ela~~l~~~~~t~s~hL~~L~~aG   52 (61)
T PF12840_consen    4 FKALSDPTRLRILRLLAS-NGPMTVSELAEELGISQSTVSYHLKKLEEAG   52 (61)
T ss_dssp             HHHHTSHHHHHHHHHHHH-CSTBEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHhc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            455666678889999933 2899999999999999999999888776544

...

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=93.41  E-value=0.18  Score=43.65  Aligned_cols=101  Identities=16%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CC--Cccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AI--SPAD  191 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~--p~~D  191 (296)
                      ..++..++=||||.|.+.+...+. +.. .+..+|+ ..+++..++         ...|+.+..||-+.   ..  ..||
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            456789999999999999988887 555 5778888 777777665         57899999998665   23  3599


Q ss_pred             eeEehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          192 AVLLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       192 ~v~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +|+.-..=-..|-.  -...++.-+.++||+   ||.+++...
T Consensus       198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q~e  237 (337)
T KOG1562|consen  198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQGE  237 (337)
T ss_pred             EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEecc
Confidence            99874311001111  013566778899999   888776653

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=93.28  E-value=0.027  Score=35.57  Aligned_cols=41  Identities=29%  Similarity=0.455  Sum_probs=32.4

Q ss_pred             cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +.|++.|.+.+++.|+.|||+++|++..-+.|.|......|
T Consensus         6 l~iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g   46 (52)
T PF09339_consen    6 LRILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEG   46 (52)
T ss_dssp             HHHHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCc
Confidence            45778888766778999999999999999988877766544

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.26  E-value=0.87  Score=38.34  Aligned_cols=147  Identities=10%  Similarity=0.038  Sum_probs=85.6

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHh-hccCCCCCCeeEEec-cCCC----CCC-cc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV-NGLDSDLANLKYVGG-DMFE----AIS-PA  190 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~ri~~~~~-D~~~----~~p-~~  190 (296)
                      ..++.+. ...++..+||||..||.++..++++- -.+++++|. -..+ ...+ ..+|+..... |+..    .+. ..
T Consensus        69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR-~d~rV~~~E~tN~r~l~~~~~~~~~  145 (245)
T COG1189          69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLR-NDPRVIVLERTNVRYLTPEDFTEKP  145 (245)
T ss_pred             HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHh-cCCcEEEEecCChhhCCHHHcccCC
Confidence            3455555 13467899999999999999888873 347888887 3333 2333 5666665543 4433    122 25


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEE-EEeeeeCCCCCCCchhhhhhhhhhhhhhh--cCccccCHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVI-IIDMIRENKKGDDKSIETQLFFDMLMMVL--LTGTERDEKE  267 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ll-i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~rt~~e  267 (296)
                      |++++--.+     -....+|-.+...++|   ++-++ ++-+-....+.         ...- -.+.  ......-..+
T Consensus       146 d~~v~DvSF-----ISL~~iLp~l~~l~~~---~~~~v~LvKPQFEagr~---------~v~k-kGvv~d~~~~~~v~~~  207 (245)
T COG1189         146 DLIVIDVSF-----ISLKLILPALLLLLKD---GGDLVLLVKPQFEAGRE---------QVGK-KGVVRDPKLHAEVLSK  207 (245)
T ss_pred             CeEEEEeeh-----hhHHHHHHHHHHhcCC---CceEEEEecchhhhhhh---------hcCc-CceecCcchHHHHHHH
Confidence            677663222     2235778888888998   55444 33332222111         1100 0000  0122335578


Q ss_pred             HHHHHHhcCCceeEEEEcC
Q 022515          268 WTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~~~  286 (296)
                      +.+++.+.||++..+.+.+
T Consensus       208 i~~~~~~~g~~~~gl~~Sp  226 (245)
T COG1189         208 IENFAKELGFQVKGLIKSP  226 (245)
T ss_pred             HHHHHhhcCcEEeeeEccC
Confidence            8899999999998887653

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=93.11  E-value=0.24  Score=43.37  Aligned_cols=74  Identities=15%  Similarity=0.169  Sum_probs=42.9

Q ss_pred             CCEEEEecCCchHH-HHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEec----cCCCCC--C--cccee
Q 022515          131 LNSLVDVGGGIGTA-AKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGG----DMFEAI--S--PADAV  193 (296)
Q Consensus       131 ~~~vLDvGgG~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~----D~~~~~--p--~~D~v  193 (296)
                      .-++||||+|.... .+--++.| ++++++.|+ +..++.|++       +.++|+++..    +++...  +  .||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            56899999998744 34334444 899999999 889988876       6789999754    455422  1  39999


Q ss_pred             EehhhhccCCch
Q 022515          194 LLKWILHDWNDE  205 (296)
Q Consensus       194 ~~~~vlh~~~d~  205 (296)
                      +|.=-+|.-.++
T Consensus       182 mCNPPFy~s~~e  193 (299)
T PF05971_consen  182 MCNPPFYSSQEE  193 (299)
T ss_dssp             EE-----SS---
T ss_pred             ecCCccccChhh
Confidence            998777754443

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=92.89  E-value=0.13  Score=47.72  Aligned_cols=133  Identities=18%  Similarity=0.151  Sum_probs=81.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-eeEEeccCCCCC---C-ccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-LKYVGGDMFEAI---S-PADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~D~~~~~---p-~~D~v~~~~vlh  200 (296)
                      ....+.|+|...|.|.++.+|.+. |   +.+... |..-...-. ..+| .--+-+|..+++   | .||++-..+++-
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs  438 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS  438 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh
Confidence            345689999999999999999764 3   444443 321111000 1111 112345666644   4 399999998887


Q ss_pred             cCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCce
Q 022515          201 DWNDE-ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSD  279 (296)
Q Consensus       201 ~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~  279 (296)
                      .+.+. +...+|-++-|.|+|   ||.++|-|..-                             ...+++.++..-.++.
T Consensus       439 ~~~~rC~~~~illEmDRILRP---~G~~iiRD~~~-----------------------------vl~~v~~i~~~lrW~~  486 (506)
T PF03141_consen  439 LYKDRCEMEDILLEMDRILRP---GGWVIIRDTVD-----------------------------VLEKVKKIAKSLRWEV  486 (506)
T ss_pred             hhcccccHHHHHHHhHhhcCC---CceEEEeccHH-----------------------------HHHHHHHHHHhCcceE
Confidence            66543 456889999999999   89988866321                             2345666777777765


Q ss_pred             eEEEEcCC---cceEEEEeC
Q 022515          280 YKIIPILG---LRSLIEVYP  296 (296)
Q Consensus       280 ~~~~~~~~---~~~vi~~~~  296 (296)
                      ..+..-.+   ...|+.++|
T Consensus       487 ~~~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  487 RIHDTEDGPDGPEKILICQK  506 (506)
T ss_pred             EEEecCCCCCCCceEEEEEC
Confidence            54433332   245666554

; GO: 0008168 methyltransferase activity

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=92.86  E-value=0.042  Score=33.86  Aligned_cols=40  Identities=25%  Similarity=0.417  Sum_probs=32.8

Q ss_pred             HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      ++.|...|.+  +|.++.|||+.+|+++..+.++|......|
T Consensus         4 R~~Il~~L~~--~~~~~~el~~~l~~s~~~vs~hL~~L~~~g   43 (47)
T PF01022_consen    4 RLRILKLLSE--GPLTVSELAEELGLSQSTVSHHLKKLREAG   43 (47)
T ss_dssp             HHHHHHHHTT--SSEEHHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHh--CCCchhhHHHhccccchHHHHHHHHHHHCc
Confidence            5667788886  899999999999999999999887766544

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=92.70  E-value=0.13  Score=47.89  Aligned_cols=55  Identities=22%  Similarity=0.377  Sum_probs=45.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCC
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMF  184 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~  184 (296)
                      ++....+||+=||||.++.++++.  -.+++++++ |+.++-|++     ...+.+|++|-..
T Consensus       381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE  441 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE  441 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence            667789999999999999888876  458999998 988888876     5688999998333

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.59  E-value=0.12  Score=37.96  Aligned_cols=86  Identities=13%  Similarity=0.226  Sum_probs=44.2

Q ss_pred             ccceeEehhhh---c-cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhh--hhhhhhhhhcCccc
Q 022515          189 PADAVLLKWIL---H-DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQL--FFDMLMMVLLTGTE  262 (296)
Q Consensus       189 ~~D~v~~~~vl---h-~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~  262 (296)
                      .||+|++.+|-   | +|.|+....+++++++.|+|    |.++|+|.-.        +.....  -..-.+......-.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p----GG~lilEpQ~--------w~sY~~~~~~~~~~~~n~~~i~   68 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP----GGILILEPQP--------WKSYKKAKRLSEEIRENYKSIK   68 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE----EEEEEEE-----------HHHHHTTTTS-HHHHHHHHH--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC----CCEEEEeCCC--------cHHHHHHhhhhHHHHhHHhceE
Confidence            38999886653   2 36788999999999999999    5667777421        111110  00000001111222


Q ss_pred             cCHHHHHHHHHh--cCCceeEEEEcC
Q 022515          263 RDEKEWTKLFTY--AGFSDYKIIPIL  286 (296)
Q Consensus       263 rt~~e~~~ll~~--aGf~~~~~~~~~  286 (296)
                      ..++++.+.|.+  .||+.++....+
T Consensus        69 lrP~~F~~~L~~~evGF~~~e~~~~~   94 (110)
T PF06859_consen   69 LRPDQFEDYLLEPEVGFSSVEELGVP   94 (110)
T ss_dssp             --GGGHHHHHTSTTT---EEEEE---
T ss_pred             EChHHHHHHHHhcccceEEEEEcccC
Confidence            355678888887  599988765553

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=92.34  E-value=0.3  Score=48.07  Aligned_cols=96  Identities=21%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHC-------C-----CCeEEeccc-h---hHhhccC-----------C-----------
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAF-------P-----KLECTCFDL-P---HVVNGLD-----------S-----------  171 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~-----------~-----------  171 (296)
                      ..-+|+|+|=|+|......++.+       |     .++++.++. |   +.+..+.           +           
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34699999999999887777554       3     467888885 3   1111110           0           


Q ss_pred             ------CCC--CeeEEeccCCCC---CC-ccceeEehhhh-ccCCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515          172 ------DLA--NLKYVGGDMFEA---IS-PADAVLLKWIL-HDWNDEECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       172 ------~~~--ri~~~~~D~~~~---~p-~~D~v~~~~vl-h~~~d~~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                            ..+  ++++.-||..+.   +. .+|++++--.- ..-|+-=...+|+++++.++|   ||++.
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~---~~~~~  203 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARP---GATLA  203 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCC---CCEEE
Confidence                  122  334556787652   22 48999884321 111111124789999999998   77665

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=92.28  E-value=0.36  Score=36.62  Aligned_cols=83  Identities=19%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CeeEEeccCCC---CC-CccceeEehhhh-----ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh
Q 022515          175 NLKYVGGDMFE---AI-SPADAVLLKWIL-----HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE  245 (296)
Q Consensus       175 ri~~~~~D~~~---~~-p~~D~v~~~~vl-----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~  245 (296)
                      ++++.-||..+   .+ ..+|++++.-.-     ..|+    .++|+++++.++|   ||.+.-..              
T Consensus        32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs----~e~~~~l~~~~~~---~~~l~Tys--------------   90 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWS----EELFKKLARLSKP---GGTLATYS--------------   90 (124)
T ss_dssp             EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSS----HHHHHHHHHHEEE---EEEEEES---------------
T ss_pred             EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCC----HHHHHHHHHHhCC---CcEEEEee--------------
Confidence            35566777765   22 248888875322     1233    3689999999999   66543211              


Q ss_pred             hhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       246 ~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                                        ....+++-|.++||.+.+....++-..++.+.+
T Consensus        91 ------------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~  123 (124)
T PF05430_consen   91 ------------------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK  123 (124)
T ss_dssp             -------------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred             ------------------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence                              224578899999999888777776677777653

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2

Probab=91.78  E-value=0.73  Score=33.09  Aligned_cols=83  Identities=17%  Similarity=0.295  Sum_probs=51.8

Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh--hcCcccc-------CHHH
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV--LLTGTER-------DEKE  267 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~r-------t~~e  267 (296)
                      .+|-|++.++..++|+++...-+     +++++.=.  |  ..        .++.+...+  .+.+..|       .+++
T Consensus         3 DvLIHYp~~d~~~~l~~La~~t~-----~~~ifTfA--P--~T--------~~L~~m~~iG~lFP~~dRsp~i~~~~e~~   65 (97)
T PF07109_consen    3 DVLIHYPAEDAAQMLAHLASRTR-----GSLIFTFA--P--RT--------PLLALMHAIGKLFPRPDRSPRIYPHREED   65 (97)
T ss_pred             ceEeccCHHHHHHHHHHHHHhcc-----CcEEEEEC--C--CC--------HHHHHHHHHhccCCCCCCCCcEEEeCHHH
Confidence            45567899999999999987654     56555321  1  11        122222222  1333333       6799


Q ss_pred             HHHHHHhcCCceeEEEEcC-Ccc--eEEEEeC
Q 022515          268 WTKLFTYAGFSDYKIIPIL-GLR--SLIEVYP  296 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~~~-~~~--~vi~~~~  296 (296)
                      +.+.++++||++.+...+. +++  .++|++|
T Consensus        66 l~~~l~~~g~~~~r~~ris~gFY~S~llE~~r   97 (97)
T PF07109_consen   66 LRRALAAAGWRIGRTERISSGFYISQLLEAVR   97 (97)
T ss_pred             HHHHHHhCCCeeeecccccCcChHHHHhhccC
Confidence            9999999999999888775 332  3555543

1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=91.62  E-value=0.23  Score=45.37  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=61.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-Cc--cceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-SP--ADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-p~--~D~v~~~~v  198 (296)
                      +...|||||.|||.++.-.+++-.+ .++.++. .+|.+.|++      ..++|+++.---.+ .+ |.  +|+++--.+
T Consensus        66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f  144 (636)
T KOG1501|consen   66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF  144 (636)
T ss_pred             ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence            4468999999999999887777633 5899998 888888876      68888887643333 22 22  677665544


Q ss_pred             hccCCchHHHHHHHHHHHhcc
Q 022515          199 LHDWNDEECVKILKKCKEAIT  219 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~  219 (296)
                      .-..--+.+..-++++++.|.
T Consensus       145 dtEligeGalps~qhAh~~L~  165 (636)
T KOG1501|consen  145 DTELIGEGALPSLQHAHDMLL  165 (636)
T ss_pred             hhhhhccccchhHHHHHHHhc
Confidence            433334445666777777664

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=91.49  E-value=1.2  Score=41.82  Aligned_cols=89  Identities=19%  Similarity=0.260  Sum_probs=64.7

Q ss_pred             CCEEEEecCCchHHHHHHHHH----CCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515          131 LNSLVDVGGGIGTAAKAIAKA----FPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKW  197 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~  197 (296)
                      ...|+=+|+|-|-+..+.++.    ...++.+.++- |..+...+.     ..+|++++..||.+ ..|  ++|+++. -
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-E  446 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-E  446 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-H
Confidence            567889999999998776663    34667888887 776654433     78999999999998 544  4787765 3


Q ss_pred             hhccCCchH-HHHHHHHHHHhccc
Q 022515          198 ILHDWNDEE-CVKILKKCKEAITS  220 (296)
Q Consensus       198 vlh~~~d~~-~~~iL~~~~~aL~p  220 (296)
                      .|--|.|.+ ..+-|.-+-+.|||
T Consensus       447 LLGSFGDNELSPECLDG~q~fLkp  470 (649)
T KOG0822|consen  447 LLGSFGDNELSPECLDGAQKFLKP  470 (649)
T ss_pred             hhccccCccCCHHHHHHHHhhcCC
Confidence            444455443 34568888888999

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=90.85  E-value=2.8  Score=37.95  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=70.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhh----ccCC-CCCCeeEEeccCCC---CCC---cccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVN----GLDS-DLANLKYVGGDMFE---AIS---PADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~----~a~~-~~~ri~~~~~D~~~---~~p---~~D~v  193 (296)
                      ..++.+|||.-.+.|.=+.++++.-++  ..++.+|. +.=+.    +.++ ...++..+..|...   ..+   .||.|
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            567799999999999999999997765  56689998 54333    3333 34446777777543   122   28888


Q ss_pred             Ee------hhhh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          194 LL------KWIL-------HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       194 ~~------~~vl-------h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      ++      ..++       ..+..++       -.++|.++.+.+||   ||+|+-.......
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYSTCS~~~  293 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYSTCSLTP  293 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEccCCch
Confidence            76      2333       2333221       25789999999999   8887766654443

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=90.55  E-value=3.7  Score=32.82  Aligned_cols=122  Identities=16%  Similarity=0.158  Sum_probs=75.0

Q ss_pred             EecCCchHHHHHHHHHCC---CCeEEeccc-hhHhhccCC--------CCCCeeEEe-ccCCC---CC--C--ccceeEe
Q 022515          136 DVGGGIGTAAKAIAKAFP---KLECTCFDL-PHVVNGLDS--------DLANLKYVG-GDMFE---AI--S--PADAVLL  195 (296)
Q Consensus       136 DvGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~-~D~~~---~~--p--~~D~v~~  195 (296)
                      =||=|.=.++.+|++.++   ++.+|.+|. .++.+....        ....+.+.- -|..+   ..  .  .||.|+.
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence            367788888899999987   567888888 555555442        123333322 24433   12  1  4999998


Q ss_pred             hhhhccCC----c-------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515          196 KWILHDWN----D-------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD  264 (296)
Q Consensus       196 ~~vlh~~~----d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt  264 (296)
                      .+---...    .       +-...+|+.+.+.|++   +|.|.|.-...++                          ++
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVTl~~~~p--------------------------y~  132 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVTLKDGQP--------------------------YD  132 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCCC--------------------------Cc
Confidence            65422200    1       1234678889999999   8988886532211                          11


Q ss_pred             HHHHHHHHHhcCCceeEEEEcC
Q 022515          265 EKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      .=.+.++.+++||...+..+..
T Consensus       133 ~W~i~~lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen  133 SWNIEELAAEAGLVLVRKVPFD  154 (166)
T ss_pred             cccHHHHHHhcCCEEEEEecCC
Confidence            1134577888999988877653

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=90.54  E-value=0.15  Score=31.35  Aligned_cols=42  Identities=21%  Similarity=0.213  Sum_probs=32.3

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .+..|+..|.+. ++.|..|||+.+|++...+.+.+..+...|
T Consensus         4 ~~~~Il~~l~~~-~~~t~~ela~~~~is~~tv~~~l~~L~~~g   45 (48)
T PF13412_consen    4 TQRKILNYLREN-PRITQKELAEKLGISRSTVNRYLKKLEEKG   45 (48)
T ss_dssp             HHHHHHHHHHHC-TTS-HHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCc
Confidence            355677888874 679999999999999999988887776654

...

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=90.35  E-value=0.57  Score=36.23  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             eEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CCC--ccceeEehhhhccCC---------chHHHHHHHHH
Q 022515          156 ECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AIS--PADAVLLKWILHDWN---------DEECVKILKKC  214 (296)
Q Consensus       156 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh~~~---------d~~~~~iL~~~  214 (296)
                      ++.++|+ ++.++.+++      ..+|++++..+=.+   -.+  ..|+++++.  -.+|         .+.....|+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence            5789999 889988876      45789998754333   223  478777642  2233         22356889999


Q ss_pred             HHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          215 KEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       215 ~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .+.|+|   ||.|.|+-..-.+.+..    +.                ....+|.+-|.+..|.+.....+
T Consensus        79 l~lL~~---gG~i~iv~Y~GH~gG~e----E~----------------~av~~~~~~L~~~~~~V~~~~~~  126 (140)
T PF06962_consen   79 LELLKP---GGIITIVVYPGHPGGKE----ES----------------EAVEEFLASLDQKEFNVLKYQFI  126 (140)
T ss_dssp             HHHEEE---EEEEEEEE--STCHHHH----HH----------------HHHHHHHHTS-TTTEEEEEEEES
T ss_pred             HHhhcc---CCEEEEEEeCCCCCCHH----HH----------------HHHHHHHHhCCcceEEEEEEEcc
Confidence            999999   88888877643332110    00                03345555556667888777765

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.32  E-value=0.51  Score=43.02  Aligned_cols=62  Identities=10%  Similarity=0.053  Sum_probs=52.7

Q ss_pred             CCCCeeEEeccCCC---CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          172 DLANLKYVGGDMFE---AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       172 ~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      ..+|++++.+++.+   ..|  .+|.+++..++-.+++++..+.++.+.++++|   ||+++.-....+.
T Consensus       273 ~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~Rsa~~~~  339 (380)
T PF11899_consen  273 RLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWRSAAVPP  339 (380)
T ss_pred             CCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEeeCCCCC
Confidence            46999999998877   232  49999999999888999999999999999999   9999987765544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=90.16  E-value=1.5  Score=40.09  Aligned_cols=100  Identities=22%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCC-eeEEecc-CCCC---C-C--ccceeEeh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LAN-LKYVGGD-MFEA---I-S--PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~r-i~~~~~D-~~~~---~-p--~~D~v~~~  196 (296)
                      ..++.+||.+|+|. |..+..+++.....+++++|. ++..+.+++. ... +.+...+ +.+.   . +  ++|+++-.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~  261 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA  261 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence            45678999999988 999999999885446888887 7777776542 111 1111121 2111   1 1  37777653


Q ss_pred             h---------------hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          197 W---------------ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       197 ~---------------vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      -               +|+-.++.  ...++.+.+.++|   +|+++++..
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~---~G~iv~~g~  307 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRK---GGTVSIIGV  307 (386)
T ss_pred             CCCcccccccccccccccccccCc--hHHHHHHHHHhcc---CCEEEEEcC
Confidence            1               12211222  3568888999999   899988864

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=89.85  E-value=1.4  Score=33.38  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=46.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCC----CccceeEehhhhccCC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAI----SPADAVLLKWILHDWN  203 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~----p~~D~v~~~~vlh~~~  203 (296)
                      .+..+|++||-|.=.-....++.+ +..+++.|+ +.   .+   ...+.++.-|+++|-    .++|+|++.+     |
T Consensus        12 ~~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a---~~g~~~v~DDif~P~l~iY~~a~lIYSiR-----P   79 (127)
T PF03686_consen   12 NNYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KA---PEGVNFVVDDIFNPNLEIYEGADLIYSIR-----P   79 (127)
T ss_dssp             S-SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------STTEE---SSS--HHHHTTEEEEEEES------
T ss_pred             CCCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---cc---ccCcceeeecccCCCHHHhcCCcEEEEeC-----C
Confidence            345699999977665554444443 589999998 55   22   267899999999953    2589998865     5


Q ss_pred             chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          204 DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       204 d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ..+...-+.++++..     |.-++|.-
T Consensus        80 P~El~~~il~lA~~v-----~adlii~p  102 (127)
T PF03686_consen   80 PPELQPPILELAKKV-----GADLIIRP  102 (127)
T ss_dssp             -TTSHHHHHHHHHHH-----T-EEEEE-
T ss_pred             ChHHhHHHHHHHHHh-----CCCEEEEC
Confidence            555566666777666     45555544

; PDB: 2K4M_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=89.81  E-value=1.2  Score=38.91  Aligned_cols=104  Identities=17%  Similarity=0.200  Sum_probs=70.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC----CCc-cceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA----ISP-ADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~----~p~-~D~v~~  195 (296)
                      ..++.+|||..++.|.=+.+++...+ ..+++..|+ +.=+...++     ....+.....|..+.    .+. ||.|++
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            45678999999999999999999876 568899998 654443332     456677777776652    223 888877


Q ss_pred             ------hhhhccCCc-------hH-------HHHHHHHHHHhc----ccCCCCcEEEEEeeee
Q 022515          196 ------KWILHDWND-------EE-------CVKILKKCKEAI----TSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 ------~~vlh~~~d-------~~-------~~~iL~~~~~aL----~p~~~gG~lli~e~~~  234 (296)
                            ..++..-++       ++       -.++|+++.+.+    +|   ||+++-.....
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYsTCS~  222 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYSTCSL  222 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEEESHH
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEEeccH
Confidence                  222322221       11       257899999999    99   78776655433

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.35  E-value=6.2  Score=29.33  Aligned_cols=86  Identities=15%  Similarity=0.132  Sum_probs=59.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCC----CccceeEehhhhccCC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAI----SPADAVLLKWILHDWN  203 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~----p~~D~v~~~~vlh~~~  203 (296)
                      ...++|++||-|-=......++++ +..++..|+ +.   .+   ...++++.-|+++|-    .++|+|++-.     |
T Consensus        12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~---~a---~~g~~~v~DDitnP~~~iY~~A~lIYSiR-----p   79 (129)
T COG1255          12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK---TA---PEGLRFVVDDITNPNISIYEGADLIYSIR-----P   79 (129)
T ss_pred             hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc---cC---cccceEEEccCCCccHHHhhCccceeecC-----C
Confidence            355699999888766555555554 478888998 44   22   266899999999962    3589888854     5


Q ss_pred             chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          204 DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       204 d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .++....+-++.++.+     ..++|.-
T Consensus        80 ppEl~~~ildva~aVg-----a~l~I~p  102 (129)
T COG1255          80 PPELQSAILDVAKAVG-----APLYIKP  102 (129)
T ss_pred             CHHHHHHHHHHHHhhC-----CCEEEEe
Confidence            6666666667777764     4555543

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=89.15  E-value=0.16  Score=34.14  Aligned_cols=39  Identities=21%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515           40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD   79 (296)
Q Consensus        40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~   79 (296)
                      |-+.|.+. +.+|+.|||..+++++..++..|..|.+.|.
T Consensus         5 i~~~l~~~-~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~   43 (69)
T PF09012_consen    5 IRDYLRER-GRVSLAELAREFGISPEAVEAMLEQLIRKGY   43 (69)
T ss_dssp             HHHHHHHS--SEEHHHHHHHTT--HHHHHHHHHHHHCCTS
T ss_pred             HHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence            44567663 7899999999999999999999999998775

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=88.35  E-value=0.42  Score=32.01  Aligned_cols=44  Identities=14%  Similarity=0.176  Sum_probs=34.7

Q ss_pred             HHHcCcchhcccCCC-CCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           35 AIQLGIPDIISKHGK-PMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        35 a~~l~lf~~L~~~~~-~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      ..+-.|+..|.+.++ ++|+.|||+.+|++...+.+.|...-..|
T Consensus         6 ~~~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G   50 (68)
T smart00550        6 SLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKG   50 (68)
T ss_pred             HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            345567788877533 29999999999999999999888776655

Helix-turn-helix-containing domain. Also known as Zab.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=88.18  E-value=1.9  Score=37.44  Aligned_cols=123  Identities=15%  Similarity=0.247  Sum_probs=72.8

Q ss_pred             EEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCCCCCCeeEEeccCCC-C----CCccceeEehhhhccCC--
Q 022515          133 SLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A----ISPADAVLLKWILHDWN--  203 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~----~p~~D~v~~~~vlh~~~--  203 (296)
                      +++|+-||.|.++..+.+.  +.+ +..+|. +..++..+..... .+..+|+.+ .    .+++|+++.+--...++  
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a   78 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA   78 (275)
T ss_pred             cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence            6899999999999988876  344 567888 7776655531111 145667766 2    34589998866544433  


Q ss_pred             -------chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515          204 -------DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       204 -------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                             |+. -.++.++.+.++..  .-+++++|.+..-...                    .......++.+.|++.|
T Consensus        79 g~~~~~~d~r-~~L~~~~~~~i~~~--~P~~~v~ENV~g~~~~--------------------~~~~~~~~i~~~l~~~G  135 (275)
T cd00315          79 GKRKGFEDTR-GTLFFEIIRILKEK--KPKYFLLENVKGLLTH--------------------DNGNTLKVILNTLEELG  135 (275)
T ss_pred             hhcCCCCCch-HHHHHHHHHHHHhc--CCCEEEEEcCcchhcc--------------------CchHHHHHHHHHHHhCC
Confidence                   222 22333333333321  2267888865432110                    01124567888889999


Q ss_pred             CceeE
Q 022515          277 FSDYK  281 (296)
Q Consensus       277 f~~~~  281 (296)
                      |.+..
T Consensus       136 Y~~~~  140 (275)
T cd00315         136 YNVYW  140 (275)
T ss_pred             cEEEE
Confidence            87643

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.87  E-value=1.3  Score=37.05  Aligned_cols=93  Identities=22%  Similarity=0.368  Sum_probs=63.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC----CC-----CeEEeccchhHhhccCCCCCCeeEEeccCCCC---------CC-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF----PK-----LECTCFDLPHVVNGLDSDLANLKYVGGDMFEA---------IS-  188 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~----p~-----~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~---------~p-  188 (296)
                      +.+-.|++|+-...|.++.-|.++.    |.     -+++.+|+..|.     ..+.|.-+.+|+.++         ++ 
T Consensus        39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----PI~GV~qlq~DIT~~stae~Ii~hfgg  113 (294)
T KOG1099|consen   39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----PIEGVIQLQGDITSASTAEAIIEHFGG  113 (294)
T ss_pred             HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----ccCceEEeecccCCHhHHHHHHHHhCC
Confidence            5677899999999999999888764    21     138889986555     344466677888772         22 


Q ss_pred             -ccceeEehh-----hhccCCchH----HHHHHHHHHHhcccCCCCcEEE
Q 022515          189 -PADAVLLKW-----ILHDWNDEE----CVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       189 -~~D~v~~~~-----vlh~~~d~~----~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                       ++|+|++-.     -+|+++.--    ....|.-...+|+|   ||..+
T Consensus       114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FV  160 (294)
T KOG1099|consen  114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFV  160 (294)
T ss_pred             CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeee
Confidence             489999843     467765321    22345555678998   77654

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=86.47  E-value=0.58  Score=35.07  Aligned_cols=52  Identities=17%  Similarity=0.162  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           26 FINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        26 ~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .-..++|.--.++.|+..|.+. ++.++.|||+.+++++..+.+||+..-..|
T Consensus         7 ~~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~lsqstvS~HL~~L~~AG   58 (117)
T PRK10141          7 LQLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQSQPKISRHLALLRESG   58 (117)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            3456677778999999999752 689999999999999999999987765544

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=85.19  E-value=1.4  Score=37.74  Aligned_cols=37  Identities=24%  Similarity=0.468  Sum_probs=27.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHCC--------CCeEEeccc-hhHhh
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFP--------KLECTCFDL-PHVVN  167 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p--------~~~~~~~D~-~~~~~  167 (296)
                      .-+|+++|+|+|.++..+++...        .++++.++. |...+
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~   64 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE   64 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH
Confidence            46999999999999999988543        358999998 55543

; PDB: 4F3N_A 1ZKD_B.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=85.17  E-value=1.6  Score=39.11  Aligned_cols=65  Identities=25%  Similarity=0.408  Sum_probs=42.2

Q ss_pred             cCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC----C----CCeEEeccc-hhHhh
Q 022515           97 DEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF----P----KLECTCFDL-PHVVN  167 (296)
Q Consensus        97 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~  167 (296)
                      ..|+....|.+.++...   . .+...+.  .+....+|++|.|+|.++..+++..    |    .+++.+++. |+..+
T Consensus        50 TApels~lFGella~~~---~-~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~  123 (370)
T COG1565          50 TAPELSQLFGELLAEQF---L-QLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA  123 (370)
T ss_pred             echhHHHHHHHHHHHHH---H-HHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence            34666666766554322   1 1222222  3456789999999999999887743    4    568999998 65544

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=85.00  E-value=0.43  Score=28.62  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=25.8

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHH
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR   72 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~   72 (296)
                      ++..|.+.|.++ +..|..+||+.+|+++..+.+++.
T Consensus         4 ~D~~Il~~Lq~d-~r~s~~~la~~lglS~~~v~~Ri~   39 (42)
T PF13404_consen    4 LDRKILRLLQED-GRRSYAELAEELGLSESTVRRRIR   39 (42)
T ss_dssp             HHHHHHHHHHH--TTS-HHHHHHHHTS-HHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCccHHHHHHHHCcCHHHHHHHHH
Confidence            445677788774 789999999999999987766443

...

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=84.76  E-value=2.1  Score=36.86  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-----CCCeEEeccchh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-----PKLECTCFDLPH  164 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-----p~~~~~~~D~~~  164 (296)
                      +.+...++|+|||.|.++..+....     +...++.+|...
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            5677899999999999999999988     567899999743

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=84.67  E-value=1.1  Score=40.35  Aligned_cols=42  Identities=24%  Similarity=0.529  Sum_probs=33.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccch-hHhhccC
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLP-HVVNGLD  170 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~  170 (296)
                      +.+..+++|||.|.|+++.-+.-.| ++++.++|-. ...+.|+
T Consensus       151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHH
Confidence            6678899999999999999887777 7899999973 3444443

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=84.51  E-value=0.7  Score=32.53  Aligned_cols=41  Identities=22%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +.|++.|.+.++++|+.|||+.+|++...+.+.+......|
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g   48 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELG   48 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence            45677777643689999999999999999999887776544

>COG3413 Predicted DNA binding protein [General function prediction only]

Probab=84.36  E-value=1.6  Score=36.46  Aligned_cols=47  Identities=23%  Similarity=0.207  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515           26 FINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ   76 (296)
Q Consensus        26 ~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~   76 (296)
                      -.+-.+|..|.++|-||.=    ..+++.|||+.+|+.+..+..+|+...+
T Consensus       158 drQ~~vL~~A~~~GYFd~P----R~~~l~dLA~~lGISkst~~ehLRrAe~  204 (215)
T COG3413         158 DRQLEVLRLAYKMGYFDYP----RRVSLKDLAKELGISKSTLSEHLRRAER  204 (215)
T ss_pred             HHHHHHHHHHHHcCCCCCC----ccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            3467799999999999953    4689999999999999988777766543

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=84.15  E-value=0.41  Score=30.32  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=25.8

Q ss_pred             cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh
Q 022515           40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW   74 (296)
Q Consensus        40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~   74 (296)
                      |+..|.+.++++|+++||+.++++.+-+.+.+...
T Consensus         5 il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L   39 (55)
T PF08279_consen    5 ILKLLLESKEPITAKELAEELGVSRRTIRRDIKEL   39 (55)
T ss_dssp             HHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence            45556333467999999999999999888866544

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=83.76  E-value=1.3  Score=37.82  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=50.8

Q ss_pred             CCCEEEEecCCchHHHHH---HHHHC--CCCeEEeccc-hhHhhc------------------------------cCC--
Q 022515          130 GLNSLVDVGGGIGTAAKA---IAKAF--PKLECTCFDL-PHVVNG------------------------------LDS--  171 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~---l~~~~--p~~~~~~~D~-~~~~~~------------------------------a~~--  171 (296)
                      -++.|++.|+=.|..++.   +++.+  ++-++.++|. ..+-+.                              ..+  
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            357899999988876644   34443  4456778774 322111                              000  


Q ss_pred             -CCCCeeEEeccCCCCCCc---cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          172 -DLANLKYVGGDMFEAISP---ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       172 -~~~ri~~~~~D~~~~~p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       ..+++.++.|.|.+..|.   -.+.++ ++=-++- +.....|..++..|.|   ||.|++-|
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p~~~IAll-~lD~DlY-esT~~aLe~lyprl~~---GGiIi~DD  212 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAPIERIALL-HLDCDLY-ESTKDALEFLYPRLSP---GGIIIFDD  212 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-TT--EEEE-EE---SH-HHHHHHHHHHGGGEEE---EEEEEESS
T ss_pred             CCcccEEEECCcchhhhccCCCccEEEE-EEeccch-HHHHHHHHHHHhhcCC---CeEEEEeC
Confidence             247899999999774442   122222 1101222 2346889999999999   55555544

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=83.64  E-value=1.7  Score=37.37  Aligned_cols=70  Identities=24%  Similarity=0.280  Sum_probs=45.1

Q ss_pred             HHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhccc
Q 022515          144 AAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITS  220 (296)
Q Consensus       144 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p  220 (296)
                      ++.+|.++.+..+++++|. +..++.|.+ .+-+.-...+ .+...++|+|++.     .|......+++++...+++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~-~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~   71 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALE-LGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKP   71 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHH-TTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-T
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHH-CCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCC
Confidence            3567888888999999999 888888853 2222222222 2234468999885     3556677888888888877

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=83.51  E-value=5.2  Score=36.10  Aligned_cols=95  Identities=22%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             CCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEecc-C----CC-CCC-ccceeEehhhh
Q 022515          131 LNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGD-M----FE-AIS-PADAVLLKWIL  199 (296)
Q Consensus       131 ~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D-~----~~-~~p-~~D~v~~~~vl  199 (296)
                      ..+|+=+|+|+ |.++..+++.+.-.++++.|. +.=++.|++  ..+.+.....+ .    .+ ..+ ++|+++=..- 
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence            34999999996 666688888888889999999 888888875  22333333222 1    11 112 4898876443 


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                             ....+..+.++++|   ||++.++-....+
T Consensus       248 -------~~~~~~~ai~~~r~---gG~v~~vGv~~~~  274 (350)
T COG1063         248 -------SPPALDQALEALRP---GGTVVVVGVYGGE  274 (350)
T ss_pred             -------CHHHHHHHHHHhcC---CCEEEEEeccCCc
Confidence                   22468888999999   9999998876555

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=81.93  E-value=1.1  Score=37.34  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      |...|..+ +|+|+.|||+++|+++..++++|......|
T Consensus        16 il~lL~~~-g~~sa~elA~~Lgis~~avR~HL~~Le~~G   53 (218)
T COG2345          16 ILELLKKS-GPVSADELAEELGISPMAVRRHLDDLEAEG   53 (218)
T ss_pred             HHHHHhcc-CCccHHHHHHHhCCCHHHHHHHHHHHHhCc
Confidence            44455543 899999999999999999999999887766

>COG4189 Predicted transcriptional regulator [Transcription]

Probab=81.83  E-value=1.7  Score=36.39  Aligned_cols=50  Identities=16%  Similarity=0.321  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515           26 FINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ   76 (296)
Q Consensus        26 ~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~   76 (296)
                      +-..++|...++..|.++|... +|+.+.|||+++|++..-+...+....+
T Consensus        14 ~dv~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgLpqst~s~~ik~Le~   63 (308)
T COG4189          14 LDVLKALASKVRVAILQLLHRK-GPLNVNEIAEALGLPQSTMSANIKVLEK   63 (308)
T ss_pred             chHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCchhhhhhhHHHHHh
Confidence            3356788899999999999873 8999999999999999887765554443

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=81.50  E-value=1.6  Score=29.96  Aligned_cols=39  Identities=10%  Similarity=0.142  Sum_probs=33.5

Q ss_pred             cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515           40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD   79 (296)
Q Consensus        40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~   79 (296)
                      |=|+|+.. |-.++.+||..++++++.++-+|..|.+.|+
T Consensus         7 lRd~l~~~-gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGk   45 (78)
T PRK15431          7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMGK   45 (78)
T ss_pred             HHHHHHHc-CcccHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence            34667664 7899999999999999999999999998775

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=81.49  E-value=0.8  Score=31.29  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=23.4

Q ss_pred             cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHH
Q 022515           40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRT   73 (296)
Q Consensus        40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~   73 (296)
                      ++..|+. |.|+|.++||.++|.+...++..|..
T Consensus        29 LLr~LA~-G~PVt~~~LA~a~g~~~e~v~~~L~~   61 (77)
T PF12324_consen   29 LLRLLAK-GQPVTVEQLAAALGWPVEEVRAALAA   61 (77)
T ss_dssp             HHHHHTT-TS-B-HHHHHHHHT--HHHHHHHHHH
T ss_pred             HHHHHHc-CCCcCHHHHHHHHCCCHHHHHHHHHh
Confidence            6778887 68999999999999998887665544

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=81.37  E-value=3.1  Score=38.59  Aligned_cols=101  Identities=16%  Similarity=0.102  Sum_probs=60.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhhccCC-C-----CCCeeEEeccCCC---CCC---ccceeE
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVNGLDS-D-----LANLKYVGGDMFE---AIS---PADAVL  194 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-~-----~~ri~~~~~D~~~---~~p---~~D~v~  194 (296)
                      .+..+.|+|.|.|.-.-++....+.  -.++.+|. -.|...... .     ..++.....-|+.   +.+   +||+++
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi  279 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI  279 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence            3467888888776655545444444  35788898 566655443 1     1222222212332   322   399999


Q ss_pred             ehhhhccCCchH-HHHHHHHHH-HhcccCCCCcEEEEEeee
Q 022515          195 LKWILHDWNDEE-CVKILKKCK-EAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       195 ~~~vlh~~~d~~-~~~iL~~~~-~aL~p~~~gG~lli~e~~  233 (296)
                      +.++||+..... ...+.+..+ ...++   |+.++|+|.-
T Consensus       280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~---g~~lViIe~g  317 (491)
T KOG2539|consen  280 CAHKLHELGSKFSRLDVPESLWRKTDRS---GYFLVIIEKG  317 (491)
T ss_pred             eeeeeeccCCchhhhhhhHHHHHhccCC---CceEEEEecC
Confidence            999999987543 234444444 55566   8999999853

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=81.29  E-value=1.1  Score=32.83  Aligned_cols=42  Identities=19%  Similarity=0.317  Sum_probs=34.8

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .+..|+..|.+. ++.|..+||+.+|+++..+.+.+..+...|
T Consensus         4 ~D~~il~~L~~~-~~~~~~~la~~l~~s~~tv~~~l~~L~~~g   45 (108)
T smart00344        4 IDRKILEELQKD-ARISLAELAKKVGLSPSTVHNRVKRLEEEG   45 (108)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            356677788763 689999999999999999999888877655

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=80.92  E-value=1.9  Score=36.44  Aligned_cols=76  Identities=18%  Similarity=0.275  Sum_probs=45.3

Q ss_pred             HHHHHhcccccCCC--CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhcc-------CC-------CCCCeeEEe
Q 022515          118 SVMIHKCKDVFEGL--NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGL-------DS-------DLANLKYVG  180 (296)
Q Consensus       118 ~~~~~~~~~~~~~~--~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~-------~~~ri~~~~  180 (296)
                      +.+++...  ++++  .+|||.=+|-|.-+.-++..  +.++++++. |-+....       .+       ...||+++.
T Consensus        63 ~~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~  138 (234)
T PF04445_consen   63 DPLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH  138 (234)
T ss_dssp             SHHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred             cHHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence            45666665  4444  49999999999999888765  779999998 4433221       11       136899999


Q ss_pred             ccCCC--CC--CccceeEehh
Q 022515          181 GDMFE--AI--SPADAVLLKW  197 (296)
Q Consensus       181 ~D~~~--~~--p~~D~v~~~~  197 (296)
                      +|..+  ..  ..+|+|++-=
T Consensus       139 ~d~~~~L~~~~~s~DVVY~DP  159 (234)
T PF04445_consen  139 GDALEYLRQPDNSFDVVYFDP  159 (234)
T ss_dssp             S-CCCHCCCHSS--SEEEE--
T ss_pred             CCHHHHHhhcCCCCCEEEECC
Confidence            99887  33  2599998843

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=80.90  E-value=16  Score=30.40  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=56.3

Q ss_pred             CCCEEEEecCCch----HHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC----CCCccceeE
Q 022515          130 GLNSLVDVGGGIG----TAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE----AISPADAVL  194 (296)
Q Consensus       130 ~~~~vLDvGgG~G----~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~----~~p~~D~v~  194 (296)
                      +.+.|+++.++.|    .++.+.+.+.-+-+.+.+-. ++-....++      ..+.++|+.|+-.+    .+.+.|+++
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v  120 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV  120 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence            4568999965433    34444555666666665544 332222222      35667998887433    244688887


Q ss_pred             ehhhhccCCchHHH-HHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          195 LKWILHDWNDEECV-KILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       195 ~~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      .     |...++.. ++|+.+.  +.|   .|.+++......
T Consensus       121 V-----Dc~~~d~~~~vl~~~~--~~~---~GaVVV~~Na~~  152 (218)
T PF07279_consen  121 V-----DCKREDFAARVLRAAK--LSP---RGAVVVCYNAFS  152 (218)
T ss_pred             E-----eCCchhHHHHHHHHhc--cCC---CceEEEEecccc
Confidence            7     44555555 6777543  455   578888776554

The function of this family is unknown.

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=80.76  E-value=1.3  Score=35.36  Aligned_cols=44  Identities=16%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             HHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515           35 AIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD   79 (296)
Q Consensus        35 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~   79 (296)
                      .++..|..+|.++ +..|..|||+++|+++..+.+++..+..+|-
T Consensus        14 ~~D~~IL~~Lq~d-~R~s~~eiA~~lglS~~tv~~Ri~rL~~~Gv   57 (164)
T PRK11169         14 RIDRNILNELQKD-GRISNVELSKRVGLSPTPCLERVRRLERQGF   57 (164)
T ss_pred             HHHHHHHHHhccC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence            4677889999874 8999999999999999999998888887763

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=80.47  E-value=1.2  Score=35.03  Aligned_cols=43  Identities=14%  Similarity=0.242  Sum_probs=37.0

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD   79 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~   79 (296)
                      .+..|.+.|..+ +..|..+||+++|+++..+.+++..+..+|-
T Consensus        10 ~D~~Il~~Lq~d-~R~s~~eiA~~lglS~~tV~~Ri~rL~~~Gv   52 (153)
T PRK11179         10 LDRGILEALMEN-ARTPYAELAKQFGVSPGTIHVRVEKMKQAGI   52 (153)
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence            567788889874 7899999999999999999998888887763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		4e-59
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		8e-59
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		9e-59
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		1e-52
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		1e-52
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		1e-52
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		6e-32
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		2e-30
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		6e-30
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		2e-27
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		1e-24
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		7e-14
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		1e-10
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		1e-09
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		1e-08
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		1e-07
3i53_A	332	Crystal Structure Of An O-Methyltransferase (Ncsb1)		4e-07
1x19_A	359	Crystal Structure Of Bchu Involved In Bacteriochlor		9e-07
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		2e-06
1xds_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		1e-05

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  224 bits (571), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/351 (38%), Positives = 190/351 (54%), Gaps = 61/351 (17%)
Query: 4   IDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIP---------------------- 41
           I+G   +E+ +AQ  ++ HI+ FI+SM+LK A+++ IP                      
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 42  --------------------DIISKHGKPMTL---NELV---SALTINP----------S 65
                               +II+K  +   L   +EL+   S L + P          S
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124
Query: 66  KSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCK 125
            S  +L+ W   +D T F    G   W++    P+ N  FN+AMASD+ L  ++ +  C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCD 183
Query: 126 DVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE 185
            VF+GL S+VDV              FPKL+C  FD P VV  L S   NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDMFT 242
Query: 186 AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245
           +I  ADAVLLK+ILH+W D++C++ILKKCKEA+T+DGK+GKV IIDM+ + KK +++  +
Sbjct: 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQ 302
Query: 246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            +L  D + M  L G ER+E+EW KLF  AGF  YKI P+ G  SLIE+YP
Sbjct: 303 IKLLMD-VNMACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score =  223 bits (569), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 134/356 (37%), Positives = 188/356 (52%), Gaps = 66/356 (18%)
Query: 4   IDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTIN 63
           I+    +E+ +AQ  ++ +++ F++SM+LK +I++ IP+II  HGKP+TL+ LVS L I 
Sbjct: 5   INNRKPSEIFKAQALLYKNMYAFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIP 64
Query: 64  PSK--SRCQLRTWFQND------------------------------------------- 78
            +K  +  +L  +  ++                                           
Sbjct: 65  STKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVL 124
Query: 79  DPTPFDTAHGKTLWEYAGD------------------EPKLNNFFNEAMASDAWLATSVM 120
           DPT   + H    W Y  D                   P+ N  +N+A+ASD+ +    M
Sbjct: 125 DPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAM 184
Query: 121 IHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVG 180
              C  VFEGL S+VDV              FPKL C  FD P VV  L     NL YVG
Sbjct: 185 -KDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGS-NNLTYVG 242
Query: 181 GDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD 240
           GDMF ++  ADAVLLK +LHDW D++C+KILKKCKEA+TSDGK+GKVI+IDM+   KK +
Sbjct: 243 GDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDE 302
Query: 241 DKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           ++  + +L  + + +  + G ER+E+EW KLF  AGF DYKI P  GL SLIE+YP
Sbjct: 303 NQLTQIKLLMN-VTISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIYP 357

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  223 bits (569), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 183/351 (52%), Gaps = 61/351 (17%)
Query: 4   IDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKP------------- 50
           I+G   +E+ +AQ  ++ HI+ FI+S +LK A++  IP+II  HGKP             
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVP 64
Query: 51  ----------------------MTLNELVSALTINP-----------------------S 65
                                 +T  E   ALT+                         S
Sbjct: 65  SSKIGNVRRLXRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLS 124
Query: 66  KSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCK 125
            S  +L+ W   +D T F    G   W++    P+ N  FN+A ASD+ L  ++ +  C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKL-INLALRDCD 183
Query: 126 DVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE 185
            VF+GL S+VDV              FPKL+C  FD P VV  L S   NL YVGGD F 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-SGSNNLTYVGGDXFT 242
Query: 186 AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245
           +I  ADAVLLK+ILH+W D++C++ILKKCKEA+T+DGK+GKV IID + + KK +++  +
Sbjct: 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQ 302
Query: 246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            +L  D+     L G ER+E+EW KLF  AGF  YKI P+ G  SLIE+YP
Sbjct: 303 IKLLXDV-NXACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/267 (44%), Positives = 157/267 (58%), Gaps = 8/267 (2%)
Query: 35  AIQLGIPDIISKHGKPMTLNELVSALTINPSKSR--CQLRTWFQND-DPTPFDTAHGKTL 91
           A  L  P  +   GKP  L+ +V    ++PS        + WF  D + T F+ A G++ 
Sbjct: 94  AYSLTPPSKLLISGKPTCLSSIVKG-ALHPSSLDMWSSSKKWFNEDKEQTLFECATGESF 152
Query: 92  WEYAG--DEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXX 149
           W++     E    + F +AMASD+ +   +++ + K VFEGL SLVDV            
Sbjct: 153 WDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGGTGGVTKLIH 211
Query: 150 XXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK 209
             FP L+CT FD P VV  L  +  NL +VGGDMF++I  ADAVLLKW+LHDWNDE+ +K
Sbjct: 212 EIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLK 270
Query: 210 ILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT 269
           ILK  KEAI+  GK GKVIIID+  +    D    E QL +D++M+ +  G ER ++EW 
Sbjct: 271 ILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWE 330
Query: 270 KLFTYAGFSDYKIIPILGLRSLIEVYP 296
           KL   AGFS YKI PI G +SLIEVYP
Sbjct: 331 KLIYDAGFSSYKITPISGFKSLIEVYP 357

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/267 (44%), Positives = 157/267 (58%), Gaps = 8/267 (2%)
Query: 35  AIQLGIPDIISKHGKPMTLNELVSALTINPSKSR--CQLRTWFQND-DPTPFDTAHGKTL 91
           A  L  P  +   GKP  L+ +V    ++PS        + WF  D + T F+ A G++ 
Sbjct: 95  AYSLTPPSKLLISGKPTCLSSIVKG-ALHPSSLDMWSSSKKWFNEDKEQTLFECATGESF 153
Query: 92  WEYAG--DEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXX 149
           W++     E    + F +AMASD+ +   +++ + K VFEGL SLVDV            
Sbjct: 154 WDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGGTGGVTKLIH 212
Query: 150 XXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK 209
             FP L+CT FD P VV  L  +  NL +VGGDMF++I  ADAVLLKW+LHDWNDE+ +K
Sbjct: 213 EIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLK 271
Query: 210 ILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT 269
           ILK  KEAI+  GK GKVIIID+  +    D    E QL +D++M+ +  G ER ++EW 
Sbjct: 272 ILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWE 331
Query: 270 KLFTYAGFSDYKIIPILGLRSLIEVYP 296
           KL   AGFS YKI PI G +SLIEVYP
Sbjct: 332 KLIYDAGFSSYKITPISGFKSLIEVYP 358

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score =  203 bits (516), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/267 (44%), Positives = 157/267 (58%), Gaps = 8/267 (2%)
Query: 35  AIQLGIPDIISKHGKPMTLNELVSALTINPSKSR--CQLRTWFQND-DPTPFDTAHGKTL 91
           A  L  P  +   GKP  L+ +V    ++PS        + WF  D + T F+ A G++ 
Sbjct: 91  AYSLTPPSKLLISGKPTCLSSIVKG-ALHPSSLDMWSSSKKWFNEDKEQTLFECATGESF 149
Query: 92  WEYAG--DEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXX 149
           W++     E    + F +AMASD+ +   +++ + K VFEGL SLVDV            
Sbjct: 150 WDFLNKDSESSTLSMFQDAMASDSRMF-KLVLQENKRVFEGLESLVDVGGGTGGVTKLIH 208
Query: 150 XXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK 209
             FP L+CT FD P VV  L  +  NL +VGGDMF++I  ADAVLLKW+LHDWNDE+ +K
Sbjct: 209 EIFPHLKCTVFDQPQVVGNLTGN-ENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLK 267
Query: 210 ILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT 269
           ILK  KEAI+  GK GKVIIID+  +    D    E QL +D++M+ +  G ER ++EW 
Sbjct: 268 ILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWE 327
Query: 270 KLFTYAGFSDYKIIPILGLRSLIEVYP 296
           KL   AGFS YKI PI G +SLIEVYP
Sbjct: 328 KLIYDAGFSSYKITPISGFKSLIEVYP 354

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  134 bits (337), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 12/232 (5%)
Query: 57  VSALTINPSKSRCQLRTWFQNDDPT-----PFDTAHGKTLWEYAGDEPKLNNFFNEAMAS 111
           +SAL +  ++ +  + +W+   D       PF+ A+G T +EY G +P+ N  FN+ M S
Sbjct: 124 ISALNLM-NQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGM-S 181
Query: 112 DAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDS 171
           D    T   I +    FEGL SLVDV              +P ++   FDLPHV+    S
Sbjct: 182 DHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPS 241
Query: 172 DLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231
               +++VGGDMF +I  ADAV +KWI HDW+DE C+K LK C EA+  +   GKVI+ +
Sbjct: 242 -YPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDN---GKVIVAE 297
Query: 232 MIRENKKGDDKSIETQLFFDMLMMVL-LTGTERDEKEWTKLFTYAGFSDYKI 282
            I         + +  +  D++M+     G ER +KE+  L   AGF  +K+
Sbjct: 298 CILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKV 349

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 109/205 (53%), Gaps = 6/205 (2%)
Query: 78  DDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDV 137
           D   PF+ A+G + +EY G +P+ N  FNE M + + + T  ++ +    FEGL +LVDV
Sbjct: 150 DGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL-ELYHGFEGLGTLVDV 208
Query: 138 XXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKW 197
                         +P ++   FDLPHV++        + +VGGDMF+ +   D +L+KW
Sbjct: 209 GGGVGATVAAIAAHYPTIKGVNFDLPHVISEA-PQFPGVTHVGGDMFKEVPSGDTILMKW 267
Query: 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL 257
           ILHDW+D+ C  +LK C +A+ +    GKV+++  I       + S +     DM+M+  
Sbjct: 268 ILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAH 324
Query: 258 -LTGTERDEKEWTKLFTYAGFSDYK 281
              G ER E+E+  L   AGF+  K
Sbjct: 325 NPGGRERYEREFQALARGAGFTGVK 349

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 15/223 (6%)
Query: 68  RCQLRTWFQNDDPT-----PFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIH 122
           +  L  WF   D       PF+ A+G  +++Y G + ++N  FN+ M+S++ + T   I 
Sbjct: 137 KVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTI-TMKKIL 195
Query: 123 KCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGD 182
           +  + FEGL ++VDV              +P +    FDLPHV+    +  + ++++GGD
Sbjct: 196 EMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA-FSGVEHLGGD 254
Query: 183 MFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK 242
           MF+ +   DA+ +KWI HDW+DE C+K+LK C  A+      GKVI+ + I       D 
Sbjct: 255 MFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYIL--PPSPDP 309
Query: 243 SIETQLFF--DMLMMVL-LTGTERDEKEWTKLFTYAGFSDYKI 282
           SI T++    D LM+     G ER EKE+  L   +GF  +K+
Sbjct: 310 SIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKV 352

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 11/203 (5%)
Query: 83  FDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXX 142
           F   HG T +E+ G + K+N  FN++M          M+ +    FEG+++LVDV     
Sbjct: 163 FKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRML-EIYTGFEGISTLVDVGGGSG 221
Query: 143 XXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDW 202
                    +P ++   FDLP V+      L+ +++VGGDMF ++   DA++LK + H+W
Sbjct: 222 RNLELIISKYPLIKGINFDLPQVIENAPP-LSGIEHVGGDMFASVPQGDAMILKAVCHNW 280
Query: 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMI---RENKKGDDKSIETQLFFDMLMMVLLT 259
           +DE+C++ L  C +A++ +   GKVII++ I     N   + K + T    D LM + + 
Sbjct: 281 SDEKCIEFLSNCHKALSPN---GKVIIVEFILPEEPNTSEESKLVST---LDNLMFITVG 334
Query: 260 GTERDEKEWTKLFTYAGFSDYKI 282
           G ER EK++ KL   +GFS +++
Sbjct: 335 GRERTEKQYEKLSKLSGFSKFQV 357

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 5/200 (2%)
Query: 83  FDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXX 142
           F   HG T +E+ G + K N  FN++   D          +    FEG+++LVDV     
Sbjct: 163 FKNVHGVTKYEFXGKDKKXNQIFNKSXV-DVCATEXKRXLEIYTGFEGISTLVDVGGGSG 221
Query: 143 XXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDW 202
                    +P ++   FDLP V+      L+ +++VGGD F ++   DA +LK + H+W
Sbjct: 222 RNLELIISKYPLIKGINFDLPQVIENAPP-LSGIEHVGGDXFASVPQGDAXILKAVCHNW 280
Query: 203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTE 262
           +DE+C++ L  C +A++ +   GKVII++ I   +    +  +     D L  + + G E
Sbjct: 281 SDEKCIEFLSNCHKALSPN---GKVIIVEFILPEEPNTSEESKLVSTLDNLXFITVGGRE 337
Query: 263 RDEKEWTKLFTYAGFSDYKI 282
           R EK++ KL   +GFS +++
Sbjct: 338 RTEKQYEKLSKLSGFSKFQV 357

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 17/209 (8%)
Query: 83  FDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXX 142
           FD A+G + W+   ++PK    FN A  S + L  +  +    D F G  + VD+     
Sbjct: 157 FDVANGTSFWQLTHEDPKARELFNRAXGSVS-LTEAGQVAAAYD-FSGAATAVDIGGGRG 214
Query: 143 XXXXXXXXXFPKLECTCFDLPHVVNGLDSDLANL------KYVGGDMFEAIS-PADAVLL 195
                    FP L  T  + P V       L         + + GD FE I   AD  L+
Sbjct: 215 SLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLI 274
Query: 196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM 255
           K +LHDW+D++ V+IL++   A   D    ++++ID +      D++   + LF D+L++
Sbjct: 275 KHVLHDWDDDDVVRILRRIATAXKPD---SRLLVIDNLI-----DERPAASTLFVDLLLL 326
Query: 256 VLLTGTERDEKEWTKLFTYAGFSDYKIIP 284
           VL+ G ER E E+  L   +G    + +P
Sbjct: 327 VLVGGAERSESEFAALLEKSGLRVERSLP 355

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 12/172 (6%)
Query: 116 ATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVV--NGLDS-D 172
           A  +++ +  D F    ++ DV               P L+    D   VV  + LD+ D
Sbjct: 171 AEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPD 229
Query: 173 LANL-KYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID 231
           +A   K V GD    +  AD  +LK ILH+W DE+ V+IL  C+    +    G+V++ID
Sbjct: 230 VAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPA---HGRVLVID 286
Query: 232 MIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII 283
            +        +S E     D   +   TG ER   E   LFT AG    +++
Sbjct: 287 AVVPEGNDAHQSKEX----DFXXLAARTGQERTAAELEPLFTAAGLRLDRVV 334

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 18/219 (8%)
Query: 67  SRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKD 126
           S  +L    +   PT +++ +GK  +E     P L   F+  +A D  +A          
Sbjct: 123 SFTRLPDAIRTGRPT-YESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD- 180
Query: 127 VFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFDLPHVVNGLDSDLAN------LKYVG 180
            +  +  ++DV               P +  T  ++   V+   S L +      +  V 
Sbjct: 181 -WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVE 239
Query: 181 GDMFEAI-SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG 239
           GD FE +   ADA++L ++L +W D + V+IL +C EA+   G+        +I E    
Sbjct: 240 GDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRI-------LIHERDDL 292
Query: 240 DDKSIETQLF-FDMLMMVLLTGTERDEKEWTKLFTYAGF 277
            + S   Q    D+ M+V L G  R  ++W  L   AG 
Sbjct: 293 HENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGL 331

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 12/137 (8%)
Query: 152 FPKLECTCFDLPHVVNGLDSDLA-----NLKYVGGDMFEAISP-ADAVLLKWILHDWNDE 205
           +P  + T FD+P VV       +      + +  GD F+   P AD  +L  +LHDW D 
Sbjct: 201 YPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADG 260
Query: 206 ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDE 265
           +C  +L++        G  G ++I  ++ E+++G    + TQL + + M+V   G ER  
Sbjct: 261 KCSHLLERIYHTCKPGG--GILVIESLLDEDRRG---PLLTQL-YSLNMLVQTEGQERTP 314
Query: 266 KEWTKLFTYAGFSDYKI 282
             +  L + AGF D++ 
Sbjct: 315 THYHMLLSSAGFRDFQF 331

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 18/201 (8%)
Query: 87  HGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFE--GLNSLVDVXXXXXXX 144
           +G+  WE    +  L + F+  M+ D  LA         D ++   +  ++DV       
Sbjct: 141 YGRPFWEDLSADVALADSFDALMSCDEDLA----YEAPADAYDWSAVRHVLDVGGGNGGM 196
Query: 145 XXXXXXXFPKLECTCFDLPHVVNGL-----DSDLANLKYVG-GDMFEAIS-PADAVLLKW 197
                   P L  T  +L            D+ LA+   V  GD F+ +   AD VLL +
Sbjct: 197 LAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 256
Query: 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL 257
           +L +W+DE+ + IL+ C  A+      G+++++D       G D+   T    D+ M+  
Sbjct: 257 VLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADVEGDGADRFFST--LLDLRMLTF 311
Query: 258 LTGTERDEKEWTKLFTYAGFS 278
           + G  R   E   L   AG +
Sbjct: 312 MGGRVRTRDEVVDLAGSAGLA 332

>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 169 LDSDLAN-LKYVGGDMFEAI-SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGK 226
           LD+ L+   + V G  F+ + + A   +L  +LHDW+D   V IL++C EA    G  G 
Sbjct: 213 LDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAA---GSGGV 269
Query: 227 VIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI 285
           V++I+ +     GD+ +       D+ M+    G ER   E  +L   AG +     PI
Sbjct: 270 VLVIEAV----AGDEHA---GTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI 321

>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 70/139 (50%), Gaps = 12/139 (8%)
Query: 102 NNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVXXXXXXXXXXXXXXFPKLECTCFD 161
           N +F E   S+A  A  +++ + K   +G+  ++DV              FP+L+ T  +
Sbjct: 164 NLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILN 221
Query: 162 LPHVVNGLDSDLA------NLKYVGGDMFEAISP-ADAVLLKWILHDWNDEECVKILKKC 214
           LP  ++ ++ + A       ++ +  D+++   P ADAVL   IL+  N++    + KK 
Sbjct: 222 LPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKA 281
Query: 215 KEAITSDGKKGKVIIIDMI 233
            +A+ S    G+++I+DM+
Sbjct: 282 FDAMRSG---GRLLILDMV 297

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 23/213 (10%)
Query: 81  TP-FDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDV--FEGLNSLVDV 137
           TP F+ A G+  + Y    P     F  AM      A+++  H+   +  F G  S VDV
Sbjct: 121 TPGFELAFGEDFYSYLKRCPDAGRRFLLAMK-----ASNLAFHEIPRLLDFRG-RSFVDV 174
Query: 138 XXXXXXXXXXXXXXFPKLECTCFD----LPHVVNGLDSDLAN--LKYVGGDMFEAI-SPA 190
                          P       D    L    + L S LA   +  VGGDM + + S  
Sbjct: 175 GGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNG 234
Query: 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF 250
           D  LL  I+ D ++   +++L  C+EA+  D   G+V++I+      +    S+     +
Sbjct: 235 DIYLLSRIIGDLDEAASLRLLGNCREAMAGD---GRVVVIERTISASEPSPMSV----LW 287
Query: 251 DMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII 283
           D+ + +   G  R  +E   L    GF+  +I+
Sbjct: 288 DVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV 320

>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 170 DSDLANLKYVG-GDMFEAIS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKV 227
           D+ LA+   V  GD F+ +   AD VLL ++L +W+DE+ + IL+ C  A+      G++
Sbjct: 227 DAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE---PGGRL 283
Query: 228 IIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS 278
           +++D       G D+   T    D+  +    G  R   E   L   AG +
Sbjct: 284 LVLDRADVEGDGADRFFST--LLDLRXLTFXGGRVRTRDEVVDLAGSAGLA 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	1e-126
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-124
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-117
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	1e-114
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	1e-113
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-112
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	1e-112
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	1e-111
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	1e-107
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-100
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	3e-99
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	4e-13
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	4e-98
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-82
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-79
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	1e-74
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	5e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	8e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	5e-05
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	9e-04

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  362 bits (930), Expect = e-126
 Identities = 143/351 (40%), Positives = 192/351 (54%), Gaps = 61/351 (17%)

Query: 4   IDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTIN 63
           I+G   +E+ +AQ  ++ HI+ FI+SM+LK A+++ IP+II  HGKP++L+ LVS L + 
Sbjct: 5   INGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP 64

Query: 64  PSKSRCQLR---------------------------TWFQNDDP---------------- 80
            SK     R                                                   
Sbjct: 65  SSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLS 124

Query: 81  ---------------TPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCK 125
                          T F    G   W++    P+ N  FN+AMASD+ L    +   C 
Sbjct: 125 GSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CD 183

Query: 126 DVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE 185
            VF+GL S+VDVGGG GT AK I + FPKL+C  FD P VV  L     NL YVGGDMF 
Sbjct: 184 FVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-NNLTYVGGDMFT 242

Query: 186 AISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE 245
           +I  ADAVLLK+ILH+W D++C++ILKKCKEA+T+DGK+GKV IIDM+ + KK +++  +
Sbjct: 243 SIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQ 302

Query: 246 TQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            +L  D+ M   L G ER+E+EW KLF  AGF  YKI P+ G  SLIE+YP
Sbjct: 303 IKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  356 bits (916), Expect = e-124
 Identities = 67/347 (19%), Positives = 118/347 (34%), Gaps = 68/347 (19%)

Query: 6   GDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPS 65
              D + L++   ++     +  +  L+ A  +G+ D +     P T  EL +A   +  
Sbjct: 13  AGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHL--VDGPRTPAELAAATGTDAD 70

Query: 66  K--------------------------SRC--------------------------QLRT 73
                                                                   ++ +
Sbjct: 71  ALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVAS 130

Query: 74  WFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNS 133
               + P  F    G +L  Y   + ++   + E M + +     ++       F    +
Sbjct: 131 ALGPERP-AFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG--DFPATGT 187

Query: 134 LVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA----NLKYVGGDMFEAISP 189
           + DVGGG G     + +  P L+    D   VV     D        K V GD    +  
Sbjct: 188 VADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPH 247

Query: 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
           AD  +LK ILH+W DE+ V+IL  C+  + +    G+V++ID +      +         
Sbjct: 248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAH---GRVLVIDAVV----PEGNDAHQSKE 300

Query: 250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            D +M+   TG ER   E   LFT AG    +++    + S+    P
Sbjct: 301 MDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  341 bits (877), Expect = e-117
 Identities = 80/351 (22%), Positives = 134/351 (38%), Gaps = 73/351 (20%)

Query: 7   DHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSK 66
                   A+  V + +     +  +  A++LG+P+++     P T   L  A   +   
Sbjct: 30  PGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELL--QEGPRTATALAEATGAHEQT 87

Query: 67  SRCQLRT-----------------------WFQNDDP----------------------- 80
            R  LR                            D                         
Sbjct: 88  LRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLT 147

Query: 81  -------TPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNS 133
                    FD A+G + W+   ++PK    FN AM S +      +       F G  +
Sbjct: 148 HSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY--DFSGAAT 205

Query: 134 LVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMFEAI 187
            VD+GGG G+   A+  AFP L  T  + P V       L         + + GD FE I
Sbjct: 206 AVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETI 265

Query: 188 -SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET 246
              AD  L+K +LHDW+D++ V+IL++   A+       ++++ID +      D++   +
Sbjct: 266 PDGADVYLIKHVLHDWDDDDVVRILRRIATAM---KPDSRLLVIDNLI-----DERPAAS 317

Query: 247 QLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI-LGLRSLIEVYP 296
            LF D+L++VL+ G ER E E+  L   +G    + +P   G   ++E+  
Sbjct: 318 TLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  332 bits (853), Expect = e-114
 Identities = 63/347 (18%), Positives = 117/347 (33%), Gaps = 74/347 (21%)

Query: 9   DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSK-- 66
           +   L A  ++   +     S  +  A +LG+ D+I       +   L +A+  +  +  
Sbjct: 2   NNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLI--ESGIDSDETLAAAVGSDAERIH 59

Query: 67  -------------------------SRC------------------------QLRTWFQN 77
                                    S                                 +
Sbjct: 60  RLMRLLVAFEIFQGDTRDGYANTPTSHLLRDVEGSFRDMVLFYGEEFHAAWTPACEALLS 119

Query: 78  DDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFE-GLNSLVD 136
             P  F+ A G+  + Y    P     F  AM +      ++  H+   + +    S VD
Sbjct: 120 GTP-GFELAFGEDFYSYLKRCPDAGRRFLLAMKAS-----NLAFHEIPRLLDFRGRSFVD 173

Query: 137 VGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMFEAISP- 189
           VGGG G   KAI +A P       D    +     +L+       +  VGGDM + +   
Sbjct: 174 VGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSN 233

Query: 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
            D  LL  I+ D ++   +++L  C+EA+  DG+   V++I+          +     + 
Sbjct: 234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGR---VVVIERTI----SASEPSPMSVL 286

Query: 250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           +D+ + +   G  R  +E   L    GF+  +I+ +     +I    
Sbjct: 287 WDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  328 bits (844), Expect = e-113
 Identities = 69/343 (20%), Positives = 112/343 (32%), Gaps = 75/343 (21%)

Query: 14  EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSK------- 66
            A       + +    M ++ A  L + D I       T  E+ SA   +          
Sbjct: 4   RAAHIGLRALADLATPMAVRVAATLRVADHI--AAGHRTAAEIASAAGAHADSLDRLLRH 61

Query: 67  --------------------SRC---------------------QLRTWFQ-----NDDP 80
                                                           + +         
Sbjct: 62  LVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ 121

Query: 81  TPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGG 140
             +   +G + WE  G +P L+  F+  M+    L  + +  K    +  L  +VDVGGG
Sbjct: 122 PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAALGHVVDVGGG 179

Query: 141 IGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMFEAI-SPADAV 193
            G    A+  A   L  T  DL    +               + V G  F+ + + A   
Sbjct: 180 SGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGY 239

Query: 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML 253
           +L  +LHDW+D   V IL++C EA  S    G V++I+ +     GD+         D+ 
Sbjct: 240 VLSAVLHDWDDLSAVAILRRCAEAAGSG---GVVLVIEAV----AGDEH---AGTGMDLR 289

Query: 254 MMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
           M+    G ER   E  +L   AG +     PI    S++E+  
Sbjct: 290 MLTYFGGKERSLAELGELAAQAGLAVRAAHPI-SYVSIVEMTA 331

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  328 bits (843), Expect = e-112
 Identities = 65/358 (18%), Positives = 110/358 (30%), Gaps = 76/358 (21%)

Query: 6   GDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPS 65
           G+      +    +  ++ N +  M L+ A  L + D +       TL  L      +P 
Sbjct: 7   GEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHPQ 64

Query: 66  K-----------------------------SRC---------------------QLRTWF 75
                                                                     + 
Sbjct: 65  ALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFT 124

Query: 76  QNDDP-----TPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEG 130
              D        +   +G+  WE    +  L + F+  M+ D  LA           +  
Sbjct: 125 GLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSA 182

Query: 131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMF 184
           +  ++DVGGG G    AIA   P L  T  +L           A       +    GD F
Sbjct: 183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFF 242

Query: 185 EAISP-ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS 243
           + +   AD VLL ++L +W+DE+ + IL+ C  A+      G+++++D       GD   
Sbjct: 243 KPLPVTADVVLLSFVLLNWSDEDALTILRGCVRAL---EPGGRLLVLDRADVE--GDGAD 297

Query: 244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLR-----SLIEVYP 296
                  D+ M+  + G  R   E   L   AG +                S++E   
Sbjct: 298 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  328 bits (842), Expect = e-112
 Identities = 70/351 (19%), Positives = 127/351 (36%), Gaps = 76/351 (21%)

Query: 11  ELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQ 70
           + ++A   +   + +    M ++ A  L + D I       T+  L +     P      
Sbjct: 16  QQIDALRTLI-RLGSLHTPMVVRTAATLRLVDHI--LAGARTVKALAARTDTRPEALLRL 72

Query: 71  LR----------------------TWFQNDDP---------------------------- 80
           +R                          +D P                            
Sbjct: 73  IRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIR 132

Query: 81  ---TPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDV 137
                +++ +GK  +E     P L   F+  +A D  +A           +  +  ++DV
Sbjct: 133 TGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY--DWTNVRHVLDV 190

Query: 138 GGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMFEAI-SPA 190
           GGG G  A AIA+  P +  T  ++   V+   S L        +  V GD FE +   A
Sbjct: 191 GGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKA 250

Query: 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF 250
           DA++L ++L +W D + V+IL +C EA+      G+++I +    +   ++   E     
Sbjct: 251 DAIILSFVLLNWPDHDAVRILTRCAEAL---EPGGRILIHERDDLH---ENSFNEQFTEL 304

Query: 251 DMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILG-----LRSLIEVYP 296
           D+ M+V L G  R  ++W  L   AG    ++  +         SL+ + P
Sbjct: 305 DLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  326 bits (836), Expect = e-111
 Identities = 142/359 (39%), Positives = 187/359 (52%), Gaps = 69/359 (19%)

Query: 6   GDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPS 65
           G  ++EL  AQ H++ H++NF++SM LK A++LGI D I  HGKPMTL+EL S+L ++PS
Sbjct: 1   GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPS 60

Query: 66  KS----------------RCQLRTWFQNDDPTP---FDTAHGKTL--------------- 91
           K                    +    + D+        T   K L               
Sbjct: 61  KVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGA 120

Query: 92  --------WEYAGD---EPKLNNFFNEA--------MASDAWLA---------------T 117
                   W  +     E K    F  A        +  D+  +                
Sbjct: 121 LHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMF 180

Query: 118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLK 177
            +++ + K VFEGL SLVDVGGG G   K I + FP L+CT FD P VV  L  +  NL 
Sbjct: 181 KLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGN-ENLN 239

Query: 178 YVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237
           +VGGDMF++I  ADAVLLKW+LHDWNDE+ +KILK  KEAI+  GK GKVIIID+  +  
Sbjct: 240 FVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDET 299

Query: 238 KGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
             D    E QL +D++M+ +  G ER ++EW KL   AGFS YKI PI G +SLIEVYP
Sbjct: 300 SDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  315 bits (810), Expect = e-107
 Identities = 62/345 (17%), Positives = 127/345 (36%), Gaps = 64/345 (18%)

Query: 8   HDTELLEAQTHVWNHIFN-FINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSK 66
            + +LL         +F   I    +K AI+L +   +     P  L  L +     P +
Sbjct: 23  SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHM--AEGPKDLATLAADTGSVPPR 80

Query: 67  SRCQLR------------------------------------------------TWFQND 78
               L                                                  ++   
Sbjct: 81  LEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGL 140

Query: 79  DPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVG 138
                   + K    Y     + N +F E   S+A  A  +++ + K   +G+  ++DVG
Sbjct: 141 SQAVRGQKNFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVG 198

Query: 139 GGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMF-EAISPAD 191
           GGIG  + A+ K FP+L+ T  +LP  ++ ++ + A       ++ +  D++ E+   AD
Sbjct: 199 GGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD 258

Query: 192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFD 251
           AVL   IL+  N++    + KK  +A+ S    G+++I+DM+ ++ +  +    +     
Sbjct: 259 AVLFCRILYSANEQLSTIMCKKAFDAMRSG---GRLLILDMVIDDPENPNFDYLSHYILG 315

Query: 252 MLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
             M        +++  + ++    G+ D  ++       +  V P
Sbjct: 316 AGMPF-SVLGFKEQARYKEILESLGYKDVTMVRKYDHLLVQAVKP 359

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  298 bits (765), Expect = e-100
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 70  QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFE 129
             +    ++D   F   HG T +E+ G + K+N  FN++M          M+      FE
Sbjct: 150 NFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE-IYTGFE 208

Query: 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISP 189
           G+++LVDVGGG G   + I   +P ++   FDLP V+       + +++VGGDMF ++  
Sbjct: 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL-SGIEHVGGDMFASVPQ 267

Query: 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
            DA++LK + H+W+DE+C++ L  C +A+      GKVII++ I   +    +  +    
Sbjct: 268 GDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVEFILPEEPNTSEESKLVST 324

Query: 250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII-PILGLRSLIEVY 295
            D LM + + G ER EK++ KL   +GFS +++         ++E Y
Sbjct: 325 LDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  294 bits (755), Expect = 3e-99
 Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 70  QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFE 129
            L+     D   PF+ A+G + +EY G +P+ N  FNE M + + + T  ++ +    FE
Sbjct: 143 YLKDAVL-DGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL-ELYHGFE 200

Query: 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISP 189
           GL +LVDVGGG+G    AIA  +P ++   FDLPHV++        + +VGGDMF+ +  
Sbjct: 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF-PGVTHVGGDMFKEVPS 259

Query: 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
            D +L+KWILHDW+D+ C  +LK C +A+ +    GKV+++  I       + S +    
Sbjct: 260 GDTILMKWILHDWSDQHCATLLKNCYDALPAH---GKVVLVQCILPVNPEANPSSQGVFH 316

Query: 250 FDMLMMVLLT-GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295
            DM+M+     G ER E+E+  L   AGF+  K   I      IE  
Sbjct: 317 VDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 1  MNLIDGDH-DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISK-HGKPMTLNELVS 58
          M     D   +   +A         + +  MTLK AI+LG+ +I+    GK +T  E+ +
Sbjct: 5  MGSTAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAA 64

Query: 59 AL--TINPSKSRCQLR 72
           L    NP       R
Sbjct: 65 KLPSAANPEAPDMVDR 80

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  292 bits (748), Expect = 4e-98
 Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 70  QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFE 129
            L+     +   PF+ A+G  +++Y G + ++N  FN+ M+S++ +    ++    + FE
Sbjct: 145 YLKDAIL-EGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY-NGFE 202

Query: 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISP 189
           GL ++VDVGGG G  A  I   +P +    FDLPHV+    +  + ++++GGDMF+ +  
Sbjct: 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-SGVEHLGGDMFDGVPK 261

Query: 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
            DA+ +KWI HDW+DE C+K+LK C  A+      GKVI+ + I         + +  + 
Sbjct: 262 GDAIFIKWICHDWSDEHCLKLLKNCYAALPDH---GKVIVAEYILPPSPDPSIATKVVIH 318

Query: 250 FDMLMMVLLT-GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY 295
            D LM+     G ER EKE+  L   +GF  +K+        ++E  
Sbjct: 319 TDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFL 365

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  251 bits (644), Expect = 2e-82
 Identities = 53/346 (15%), Positives = 104/346 (30%), Gaps = 70/346 (20%)

Query: 13  LEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC--- 69
            EAQ       F  +     +  ++ GI  ++S   +  TL E+     +    ++    
Sbjct: 13  AEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLE 72

Query: 70  ----------------------------------------------QLRTWFQNDDPTPF 83
                                                          L     N  P   
Sbjct: 73  ASLTIGTILLEEDRYVLAKAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGRPE-G 131

Query: 84  DTAHGK--TLWEYAGDEP-KLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGG 140
               G+  T++E     P ++   +       +  +    +            L+D+GG 
Sbjct: 132 LKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVF--SHHPKRLLDIGGN 189

Query: 141 IGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMFEAISP----A 190
            G  A    +   ++E T  DLP  +  +    A       +   G ++ +   P     
Sbjct: 190 TGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGF 249

Query: 191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID-MIRENKKGDDKSIETQLF 249
           DAV +   L  +++EE + IL +  ++I  D    KV I++ +    +        TQ+ 
Sbjct: 250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKD---SKVYIMETLWDRQRYETASYCLTQIS 306

Query: 250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGL-RSLIEV 294
                M           +  +    AG    +I   +GL  S+++ 
Sbjct: 307 LYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQC 352

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  243 bits (621), Expect = 2e-79
 Identities = 50/333 (15%), Positives = 98/333 (29%), Gaps = 63/333 (18%)

Query: 15  AQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR-- 72
           +    +N +  +  S  +K A++L +   I       +   L      +    R      
Sbjct: 6   SPALFFNTVNAYQRSAAIKAAVELNVFTAI--SQGIESSQSLAQKCQTSERGMRMLCDYL 63

Query: 73  --------------------TWFQNDDPTPF----DTAHGKTLWE--------------- 93
                                +             +      +                 
Sbjct: 64  VIIGFMTKQAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTA 123

Query: 94  -----YAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAI 148
                    E  +   F +AM+        ++     +       ++D+    G    A+
Sbjct: 124 ISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAV 183

Query: 149 AKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMFEAISP--ADAVLLKWILH 200
           A+  P  E    D   V+     +            + G  FE       D VLL   LH
Sbjct: 184 AQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLH 243

Query: 201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL-T 259
            ++   C ++L+K K A+  +   GKVI+ D I  +   D  +      F ++M+     
Sbjct: 244 HFDVATCEQLLRKIKTALAVE---GKVIVFDFIPNS---DRITPPDAAAFSLVMLATTPN 297

Query: 260 GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLI 292
           G      E+  +F+ AGFS  ++  +   +  +
Sbjct: 298 GDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQV 330

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  231 bits (591), Expect = 1e-74
 Identities = 49/344 (14%), Positives = 103/344 (29%), Gaps = 72/344 (20%)

Query: 8   HDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKS 67
            D   L +   +      +  S  L  A+   + D+        T  E+ ++  +   K+
Sbjct: 17  EDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLT---QTGRTPAEVAASFGMVEGKA 73

Query: 68  RCQLR----------------------TWFQNDDPTPF---------------------- 83
              L                        +                               
Sbjct: 74  AILLHALAALGLLTKEGDAFRNTALTERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILR 133

Query: 84  -DTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIG 142
            +             + +  + FN+AM   +     V+      VF    +++D+ GG G
Sbjct: 134 SEKPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG--VFARARTVIDLAGGHG 191

Query: 143 TAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA------NLKYVGGDMFEAISP----ADA 192
           T    + +  P+L    +DLP   +     +        +++   ++ +A +     AD 
Sbjct: 192 TYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADV 251

Query: 193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM 252
           V+L   LH ++  E  +++      +      G ++I+ M   +   D  +      F +
Sbjct: 252 VMLNDCLHYFDAREAREVIGHAAGLVKPG---GALLILTMTMND---DRVTPALSADFSL 305

Query: 253 LMMVLLT-GTERDEKEWTKLFTYAGFSD-----YKIIPILGLRS 290
            MMV    G          +   AG +       +   ++G RS
Sbjct: 306 HMMVNTNHGELHPTPWIAGVVRDAGLAVGERSIGRYTLLIGQRS 349

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 54.3 bits (130), Expect = 9e-09
 Identities = 28/154 (18%), Positives = 50/154 (32%), Gaps = 24/154 (15%)

Query: 135 VDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLK---YVGGDMFEAISPA 190
           +D G GIG   K +            +   H++     +LA +    ++   M  A  P 
Sbjct: 98  LDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPP 156

Query: 191 ---DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ 247
              D ++++W      D + VK  K C++A+         I                E  
Sbjct: 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQAL----TPNGYIFFKENCSTGDRFLVDKE-- 210

Query: 248 LFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK 281
              D  +        R +  + +LF  +G    K
Sbjct: 211 ---DSSLT-------RSDIHYKRLFNESGVRVVK 234

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 8e-07
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 51/226 (22%)

Query: 44  ISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDDPTPFDTAH-----GKTLW---EYA 95
           I +  +    N++ +   ++  +   +LR       P            GKT W   +  
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVC 171

Query: 96  GDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKL 155
                      +      WL      +  + V E L  L+            I   +   
Sbjct: 172 LSYKVQCKMDFKI----FWL-NLKNCNSPETVLEMLQKLLYQ----------IDPNWTSR 216

Query: 156 ECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILK-KC 214
                ++   ++ + ++L  L      +          LL  +L +  + +        C
Sbjct: 217 SDHSSNIKLRIHSIQAELRRL------LKSKPYE--NCLL--VLLNVQNAKAWNAFNLSC 266

Query: 215 KEAITS---------DGKKGKVIIIDMIRENKKG--DDKSIETQLF 249
           K  +T+                I +D    +      D+     L 
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKS--LL 307

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 57/374 (15%), Positives = 106/374 (28%), Gaps = 143/374 (38%)

Query: 1   MNLIDGDHDTELLEAQTHVWNHI-FNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSA 59
           +NL + +    +LE    +   I  N+ +       I+L I  I ++  + +      + 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 60  LTINPSKSRCQLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSV 119
           L +        L       +           +        K  N FN             
Sbjct: 247 LLV--------L------LN-----------VQN-----AKAWNAFN------------- 263

Query: 120 MIHKCK--------DVFEGLN-------SLVDVGGGIGTA-AKAI-AKAFPKLECTCFDL 162
               CK         V + L+       SL      +     K++  K    L+C   DL
Sbjct: 264 --LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY---LDCRPQDL 318

Query: 163 PHVVNG------------LDSDLA---NLKYVGGD--------------------MFE-- 185
           P  V              +   LA   N K+V  D                    MF+  
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 186 AISPADA-----VLLKWILHDWND---EECVKILKKC--KEAITSDGKKGKVIIIDMIRE 235
           ++ P  A     +L   ++  W D    + + ++ K      +    K+  + I  +  E
Sbjct: 379 SVFPPSAHIPTILLS--LI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 236 NKK--GDDKSIETQL-----------FFDMLMMVL-----------LTGTERDEK--EWT 269
            K    ++ ++   +             D++   L           L   E  E+   + 
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 270 KLFTYAGFSDYKII 283
            +F    F + KI 
Sbjct: 495 MVFLDFRFLEQKIR 508

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 28/177 (15%)

Query: 129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGL-----DSDLANLKYVGGD 182
            G +  +D G GIG   K +     + E    D+    +        +       Y    
Sbjct: 78  TGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCG 136

Query: 183 MFEAISPA---DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG 239
           + +        D + ++W++    D+   + L++CK ++      G ++I D + +    
Sbjct: 137 LQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLR---PNGIIVIKDNMAQEGVI 193

Query: 240 DDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGL-RSLIEVY 295
            D         D  +        RD     ++   AG S         L   +  VY
Sbjct: 194 LDD-------VDSSVC-------RDLDVVRRIICSAGLSLLAEERQENLPDEIYHVY 236

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 32/170 (18%), Positives = 66/170 (38%), Gaps = 28/170 (16%)

Query: 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV-----NGLDSDLANLKYVGGDM--- 183
            +++ G GIG     +AK  P  E T  D+ P  +     N   + + N+K++  ++   
Sbjct: 40  KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL 99

Query: 184 -FEAISPADAVLLKWILHDWND-----EECVKILKKCKEAITSDGKKGKVIIIDMIRENK 237
            FE  S  D + + ++L          +   K+LK         G  G + +I+    + 
Sbjct: 100 PFEDSS-FDHIFVCFVLEHLQSPEEALKSLKKVLKP--------G--GTITVIEGDHGSC 148

Query: 238 KGDDKSIETQLFFDMLMMVL--LTGTERDEKEWTKLFTYAGFSDYKIIPI 285
               +  +    ++ L+ V   + G     ++   L   +GF   ++ P 
Sbjct: 149 YFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 23/170 (13%)

Query: 133 SLVDVGGGIGTAAKAIAKAFPKLECTCFDLP----HVVNGLDSDLANLKYVGGDM--FEA 186
            ++D+G G G  +  + + +P+   T  D+      +          +KY+  D   ++ 
Sbjct: 47  DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDF 106

Query: 187 ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET 246
               D V+    +H   DE+  ++ K+    +    + G  I  D++       +  +  
Sbjct: 107 EEKYDMVVSALSIHHLEDEDKKELYKRSYSILK---ESGIFINADLVHGETAFIEN-LNK 162

Query: 247 QLFFDMLMMVLLTGTERDEK-------------EWTKLFTYAGFSDYKII 283
            ++   +    LT  E                 +       AGF D   I
Sbjct: 163 TIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 29/158 (18%)

Query: 136 DVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-----DLA------NLKYVGGDM- 183
           + G G G     +  A              V G++       +A            GD  
Sbjct: 51  EFGVGTGNLTNKLLLAG-----------RTVYGIEPSREMRMIAKEKLPKEFSITEGDFL 99

Query: 184 -FEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK 242
            FE  +  D ++  +  H   D+E    + K  + +      GK++  D I  ++   DK
Sbjct: 100 SFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG---GKIVFADTIFADQDAYDK 156

Query: 243 SIETQLFFDMLMMVLLTGTER--DEKEWTKLFTYAGFS 278
           ++E         +     TE          +F   GF 
Sbjct: 157 TVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 36/166 (21%)

Query: 134 LVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVV-----NGLDSDLANLKYVGGDM---- 183
           ++D+G G G  A A +      EC   D    +V        +  + N+++  G      
Sbjct: 25  VLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 82

Query: 184 FEAISPADAVLLKWILHDWND-----EECVKILKKCKEAITSDGKKGKVIIIDMIRENKK 238
           F   S  D +  ++  H ++D      E  ++LK          + G+ +++D       
Sbjct: 83  FPDDS-FDIITCRYAAHHFSDVRKAVREVARVLK----------QDGRFLLVDHYAPEDP 131

Query: 239 GDDKSIETQLFFDMLMMVLLTGTERD--EKEWTKLFTYAGFSDYKI 282
             D+      F + L  +      R+    EW  +F+    +   I
Sbjct: 132 VLDE------FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.88
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.85
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.81
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.8
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.8
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.8
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.79
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.79
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.78
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.78
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.78
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.78
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.78
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.77
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.77
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.77
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.76
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.76
3ocj_A	305	Putative exported protein; structural genomics, PS	99.75
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.75
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.75
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.75
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.75
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.75
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.75
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.74
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.74
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.74
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.74
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.73
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.73
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.73
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.73
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.72
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.71
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.71
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.71
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.71
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.71
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.71
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.71
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.7
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.7
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.7
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.7
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.69
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.69
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.69
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.68
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.67
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.67
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.66
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.66
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.65
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.63
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.63
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.63
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.62
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.6
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.6
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.59
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.59
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.59
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.59
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.59
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.58
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.58
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.58
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.57
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.57
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.56
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.56
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.56
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.55
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.54
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.53
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.52
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.52
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.52
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.52
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.51
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.5
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.48
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.48
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.47
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.46
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.46
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.46
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.46
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.46
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.46
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.46
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.46
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.45
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.45
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.45
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.44
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.43
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.43
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.43
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.43
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.43
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.43
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.43
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.43
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.42
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.42
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.41
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.41
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.4
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.4
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.39
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.39
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.39
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.38
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.38
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.38
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.38
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.37
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.37
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.36
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.36
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.35
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.34
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.33
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.33
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.32
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.32
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.32
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.3
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.3
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.29
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.29
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.29
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.29
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.29
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.28
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.28
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.27
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.27
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.27
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.26
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.26
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.26
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.25
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.25
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.25
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.24
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.24
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.24
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.23
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.23
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.22
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.22
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.22
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.22
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.21
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.21
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.2
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.2
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.19
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.19
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.18
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.18
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.18
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.17
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.17
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.17
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.17
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.16
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.16
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.16
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.15
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.15
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.14
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.14
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.14
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.13
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.13
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.13
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.12
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.12
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.12
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.11
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.11
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.1
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.09
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.08
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.08
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.08
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.08
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.07
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.07
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.07
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.07
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.06
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.06
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.06
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.06
2o07_A	304	Spermidine synthase; structural genomics, structur	99.05
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.05
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.04
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.04
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.02
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.02
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.02
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.01
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.01
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.98
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.97
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.97
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.97
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.96
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.89
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.88
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.88
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.87
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.85
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.82
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.81
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.8
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.8
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.79
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.73
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.73
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.72
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.72
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.72
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.69
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.67
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.66
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.65
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.64
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.63
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.59
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.57
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.57
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.54
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.54
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.54
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.52
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.5
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.5
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.46
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.43
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.42
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.39
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.39
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.36
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.35
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.32
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.27
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.26
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.24
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.24
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.23
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.23
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.17
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.16
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.13
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.1
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.97
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.88
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.83
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.83
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.8
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.79
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.77
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.75
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.72
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.71
3khk_A	544	Type I restriction-modification system methylation	97.68
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.62
3lkd_A	542	Type I restriction-modification system methyltrans	97.51
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.38
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.32
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.24
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.18
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.17
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.14
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.0
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.84
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.47
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.2
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.13
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.89
3ufb_A	530	Type I restriction-modification system methyltran	95.66
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	93.8
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	93.14
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.48
2oo3_A	283	Protein involved in catabolism of external DNA; st	91.51
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.46
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	90.65
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	90.57
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	90.08
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	90.03
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	89.95
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	89.8
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	89.69
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.68
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	89.24
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	89.09
3jth_A	98	Transcription activator HLYU; transcription factor	88.66
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	88.58
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	87.64
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	87.44
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.87
1y0u_A	96	Arsenical resistance operon repressor, putative; s	86.86
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	86.06
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	85.99
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	85.86
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	85.66
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	85.47
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	85.47
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	85.32
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	85.14
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	85.07
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	84.98
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	84.97
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	84.96
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	84.94
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	84.72
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	84.08
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	83.24
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	82.87
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	82.85
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	82.85
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	82.74
2kko_A	108	Possible transcriptional regulatory protein (possi	82.5
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	82.38
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	82.25
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	82.08
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	82.0
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	81.47
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	81.23
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	81.13
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	80.43
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	80.31
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	80.12

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=2.2e-51  Score=368.68  Aligned_cols=274  Identities=20%  Similarity=0.354  Sum_probs=242.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhh-----------------------
Q 022515           14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQ-----------------------   70 (296)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~-----------------------   70 (296)
                      ++...|++++.||+.+++|++|+||||||+|++.++|+|++|||+++|++++.++|.                       
T Consensus         7 ~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~~~~y~~   86 (353)
T 4a6d_A            7 QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGGKAFYRN   86 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCccceeeC
Confidence            667789999999999999999999999999987557999999999999999988871                       


Q ss_pred             ---------------------------------HHHhhhcCCCChhhhhcCC---CchhhcccCchHHHHHHHHHHccch
Q 022515           71 ---------------------------------LRTWFQNDDPTPFDTAHGK---TLWEYAGDEPKLNNFFNEAMASDAW  114 (296)
Q Consensus        71 ---------------------------------l~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~f~~~m~~~~~  114 (296)
                                                       |.+.+++++ ++|...+|.   ++|+++.++++....|.+.|.....
T Consensus        87 t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~  165 (353)
T 4a6d_A           87 TELSSDYLTTVSPTSQCSMLKYMGRTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWS  165 (353)
T ss_dssp             CHHHHHHHSTTSTTCCHHHHHHHHHTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHH
T ss_pred             CHHHHHHhhcCCchHHHHHHHHhCHHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence                                             122233343 556666653   5788889999999999999999988


Q ss_pred             hchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-----CCCCeeEEeccCCC-CCC
Q 022515          115 LATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-----DLANLKYVGGDMFE-AIS  188 (296)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~ri~~~~~D~~~-~~p  188 (296)
                      .....+++.++  +++..+|||||||+|.++..+++++|+++++++|+|++++.|++     ..+||+++.+||++ +.|
T Consensus       166 ~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~  243 (353)
T 4a6d_A          166 VNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP  243 (353)
T ss_dssp             HHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCC
T ss_pred             HHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCC
Confidence            88888999998  78889999999999999999999999999999999999988865     46899999999998 566


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      ++|+|++++|||+|+|+++.++|++++++|+|   ||+++|+|.+.+++...+   .....+++.|+..++|++||.+||
T Consensus       244 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~~g~ert~~e~  317 (353)
T 4a6d_A          244 EADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDRRGP---LLTQLYSLNMLVQTEGQERTPTHY  317 (353)
T ss_dssp             CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSSSCCCCCHHHH
T ss_pred             CceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhCCCcCCCHHHH
Confidence            89999999999999999999999999999999   999999999998766543   345678999999899999999999


Q ss_pred             HHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          269 TKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      +++|++|||+.++++++++..++|+|+|
T Consensus       318 ~~ll~~AGf~~v~v~~~~~~~~~i~ArK  345 (353)
T 4a6d_A          318 HMLLSSAGFRDFQFKKTGAIYDAILARK  345 (353)
T ss_dssp             HHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred             HHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence            9999999999999999999999999997

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=2.6e-45  Score=330.51  Aligned_cols=282  Identities=34%  Similarity=0.596  Sum_probs=242.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCC-CCCCHHHHHHHcCC--CCc---chhhhHH----------
Q 022515            9 DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHG-KPMTLNELVSALTI--NPS---KSRCQLR----------   72 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~-~~~t~~eLA~~~~~--~~~---~l~~~l~----------   72 (296)
                      ..+..++...+++++.|++.+++|++|++||||++|++.+ +|+|++|||+++|+  +++   .++|.|+          
T Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~   93 (364)
T 3p9c_A           14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC   93 (364)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence            3467888999999999999999999999999999998743 69999999999998  877   6655221          


Q ss_pred             ----------------------------------------------------HhhhcCCCChhhhhcCCCchhhcccCch
Q 022515           73 ----------------------------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPK  100 (296)
Q Consensus        73 ----------------------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~  100 (296)
                                                                          +++++|+ ++|+..+|.++|+++.++|+
T Consensus        94 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~  172 (364)
T 3p9c_A           94 LVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPR  172 (364)
T ss_dssp             EEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHH
T ss_pred             eccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHH
Confidence                                                                2222333 56666778889999999999


Q ss_pred             HHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEe
Q 022515          101 LNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVG  180 (296)
Q Consensus       101 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~  180 (296)
                      ..+.|.+.|..++......+++.++. +++..+|||||||+|.++..+++++|+++++++|+|++++.++ ..+|++|+.
T Consensus       173 ~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~  250 (364)
T 3p9c_A          173 FNRVFNEGMKNHSIIITKKLLELYHG-FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAP-QFPGVTHVG  250 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEE
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccc-ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhh-hcCCeEEEe
Confidence            99999999998887777788888862 6678999999999999999999999999999999999999998 568999999


Q ss_pred             ccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-hcC
Q 022515          181 GDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-LLT  259 (296)
Q Consensus       181 ~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  259 (296)
                      +|+++++|..|+|+++++||+|+++++.++|++++++|+|   ||+++|.|.+.++.............+++.|+. ..+
T Consensus       251 ~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~  327 (364)
T 3p9c_A          251 GDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPG  327 (364)
T ss_dssp             CCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred             CCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccC
Confidence            9999977766999999999999999999999999999999   999999999987754432222223567888885 468


Q ss_pred             ccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      |++||.+||+++|++|||+.+++.++++..++||++|
T Consensus       328 g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          328 GRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             CCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence            9999999999999999999999999999999999987

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=9.3e-45  Score=325.29  Aligned_cols=276  Identities=24%  Similarity=0.418  Sum_probs=242.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhh-------------------
Q 022515            9 DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC-------------------   69 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~-------------------   69 (296)
                      +....++...+++++.|++.+++|++|+++|||++|.+  +|.|++|||+++|++++.++|                   
T Consensus        16 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~~~~~y~   93 (348)
T 3lst_A           16 DMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGTDADALRRVLRLLAVRDVVRESDGRFA   93 (348)
T ss_dssp             CCCHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEecCCEEe
Confidence            34567888999999999999999999999999999986  799999999999999999888                   


Q ss_pred             ---------------------------------hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhc
Q 022515           70 ---------------------------------QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLA  116 (296)
Q Consensus        70 ---------------------------------~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~  116 (296)
                                                       .|.++++++. ++|...+|.++|+++.++|+....|.+.|.......
T Consensus        94 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~  172 (348)
T 3lst_A           94 LTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAE  172 (348)
T ss_dssp             ECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhh
Confidence                                             1223344444 677777888899999999999999999999988888


Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC----CCCCeeEEeccCCCCCCccce
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS----DLANLKYVGGDMFEAISPADA  192 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~  192 (296)
                      ...+++.++  +++..+|||||||+|.++..+++++|+++++++|+|+++..++.    ..+|++++.+|+++++|+||+
T Consensus       173 ~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~  250 (348)
T 3lst_A          173 HLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADV  250 (348)
T ss_dssp             HHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSE
T ss_pred             HHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcE
Confidence            888999988  78889999999999999999999999999999999887773321    467899999999987779999


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHH
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF  272 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll  272 (296)
                      |++++++|+|+++++.++|++++++|+|   ||+++|.|...++....    .....+++.|+...+++.+|.++|.+++
T Consensus       251 v~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~~~~~~~t~~e~~~ll  323 (348)
T 3lst_A          251 HVLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVIDAVVPEGNDA----HQSKEMDFMMLAARTGQERTAAELEPLF  323 (348)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEEECCBCSSSSC----CHHHHHHHHHHHTTSCCCCBHHHHHHHH
T ss_pred             EEEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhhhcChhhhhcCCCcCCCHHHHHHHH
Confidence            9999999999999999999999999999   99999999988765332    2345778888877899999999999999


Q ss_pred             HhcCCceeEEEEcCCcceEEEEeC
Q 022515          273 TYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       273 ~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      +++||+++++.+..+..++||++|
T Consensus       324 ~~aGf~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          324 TAAGLRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             HHTTEEEEEEEECSSSCEEEEEEE
T ss_pred             HHCCCceEEEEECCCCcEEEEEEe
Confidence            999999999999778899999986

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=1.1e-43  Score=320.31  Aligned_cols=280  Identities=31%  Similarity=0.573  Sum_probs=238.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccC---CCCCCHHHHHHHcC-CCCc---chhhhH------------
Q 022515           11 ELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKH---GKPMTLNELVSALT-INPS---KSRCQL------------   71 (296)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~---~~~~t~~eLA~~~~-~~~~---~l~~~l------------   71 (296)
                      +..+....+++++.|++.+++|++|++||||++|++.   ++|+|++|||+++| .++.   .++|.|            
T Consensus        17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~   96 (368)
T 3reo_A           17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT   96 (368)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence            5677889999999999999999999999999999872   24799999999998 4665   444422            


Q ss_pred             --------------------------------------------------HHhhhcCCCChhhhhcCCCchhhcccCchH
Q 022515           72 --------------------------------------------------RTWFQNDDPTPFDTAHGKTLWEYAGDEPKL  101 (296)
Q Consensus        72 --------------------------------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  101 (296)
                                                                        .++++++. ++|+..+|.++|+++.++++.
T Consensus        97 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~  175 (368)
T 3reo_A           97 LRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRI  175 (368)
T ss_dssp             EEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHH
T ss_pred             cccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHH
Confidence                                                              12222333 566667788899999999999


Q ss_pred             HHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEec
Q 022515          102 NNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGG  181 (296)
Q Consensus       102 ~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~  181 (296)
                      .+.|.+.|..+.......+++.++. +++..+|||||||+|.++..+++++|+++++++|+|++++.++ ..++++++.+
T Consensus       176 ~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-~~~~v~~~~~  253 (368)
T 3reo_A          176 NKVFNKGMSSNSTITMKKILEMYNG-FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAP-AFSGVEHLGG  253 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCT-TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCTTEEEEEC
T ss_pred             HHHHHHHHHhhhhhHHHHHHHhccc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhh-hcCCCEEEec
Confidence            9999999999887777788888762 5678999999999999999999999999999999999999998 5689999999


Q ss_pred             cCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cCc
Q 022515          182 DMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LTG  260 (296)
Q Consensus       182 D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g  260 (296)
                      |+++++|..|+|+++++||+|+++++.++|++++++|+|   ||+++|.|.+.++.............+++.|+.. .+|
T Consensus       254 d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g  330 (368)
T 3reo_A          254 DMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGG  330 (368)
T ss_dssp             CTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBC
T ss_pred             CCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCC
Confidence            999977767999999999999999999999999999999   9999999998876554322222345678888865 489


Q ss_pred             cccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          261 TERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       261 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      ++||.+||+++|+++||+.+++.+..+..++||++|
T Consensus       331 ~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  366 (368)
T 3reo_A          331 KERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK  366 (368)
T ss_dssp             CCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             ccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence            999999999999999999999999998899999986

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=8.2e-44  Score=321.50  Aligned_cols=275  Identities=28%  Similarity=0.527  Sum_probs=241.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHH----------------
Q 022515            9 DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR----------------   72 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~----------------   72 (296)
                      +....+...++++++.|++.+++|++|++||||++|++  +|.|++|||+++|++++.++|.|+                
T Consensus        32 ~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~  109 (369)
T 3gwz_A           32 TAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDL  109 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCce
Confidence            34455777899999999999999999999999999985  799999999999999999888221                


Q ss_pred             --------------------------------------HhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccch
Q 022515           73 --------------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAW  114 (296)
Q Consensus        73 --------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~  114 (296)
                                                            +.++++. ++|...+|.++|+++.++++....|.+.|.....
T Consensus       110 y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~  188 (369)
T 3gwz_A          110 FAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSL  188 (369)
T ss_dssp             EECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHh
Confidence                                                  1222333 5566667778999999999999999999998888


Q ss_pred             hchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCC
Q 022515          115 LATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAIS  188 (296)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p  188 (296)
                      .....+++.++  +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++      ..+||+++.+|+++++|
T Consensus       189 ~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p  266 (369)
T 3gwz_A          189 TEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIP  266 (369)
T ss_dssp             HHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC
T ss_pred             hhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCC
Confidence            77888888888  77889999999999999999999999999999999999988875      36899999999998777


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                       +||+|++++++|+|+++++.++|++++++|+|   ||+++|.|...++....    . ..++++.|+...++++||.++
T Consensus       267 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~e~~~~~~~~~----~-~~~~d~~~~~~~~g~~~t~~e  338 (369)
T 3gwz_A          267 DGADVYLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVIDNLIDERPAA----S-TLFVDLLLLVLVGGAERSESE  338 (369)
T ss_dssp             SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEEBCCSSCCH----H-HHHHHHHHHHHHSCCCBCHHH
T ss_pred             CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCC----c-hhHhhHHHHhhcCCccCCHHH
Confidence             69999999999999999999999999999999   99999999988765432    2 457888888888999999999


Q ss_pred             HHHHHHhcCCceeEEEE-cCCcceEEEEeC
Q 022515          268 WTKLFTYAGFSDYKIIP-ILGLRSLIEVYP  296 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~  296 (296)
                      |+++++++||+++++.+ ..+..++||++|
T Consensus       339 ~~~ll~~aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          339 FAALLEKSGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             HHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred             HHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence            99999999999999999 577889999986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=1.4e-43  Score=315.68  Aligned_cols=265  Identities=26%  Similarity=0.383  Sum_probs=229.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHH-----------------------
Q 022515           16 QTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR-----------------------   72 (296)
Q Consensus        16 ~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~-----------------------   72 (296)
                      ...+++++.|++.+++|++|+++|||++|.+  +|.|++|||+++|++++.++|.|+                       
T Consensus         6 ~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~   83 (332)
T 3i53_A            6 AHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGE   83 (332)
T ss_dssp             CSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECTTGG
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcCHhHH
Confidence            3568899999999999999999999999986  799999999999999999888111                       


Q ss_pred             -------------------------------HhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHH
Q 022515           73 -------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMI  121 (296)
Q Consensus        73 -------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~  121 (296)
                                                     +.++++. ++|...+|.++|+++.++|+....|...|........+.++
T Consensus        84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~  162 (332)
T 3i53_A           84 QLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIA  162 (332)
T ss_dssp             GGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred             HHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHH
Confidence                                           1223333 55666677788999999999999999999987766666777


Q ss_pred             HhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCC-ccceeE
Q 022515          122 HKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAIS-PADAVL  194 (296)
Q Consensus       122 ~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p-~~D~v~  194 (296)
                      +.++  +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++      ..+|++|+.+|+++++| +||+|+
T Consensus       163 ~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~  240 (332)
T 3i53_A          163 AKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYV  240 (332)
T ss_dssp             GSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEE
T ss_pred             HhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEE
Confidence            7777  66778999999999999999999999999999999999988875      35899999999998777 799999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY  274 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~  274 (296)
                      +++++|+|+++++.++|++++++|+|   ||+++|.|...++. ..      ...+++.|+...+++.||.++|.+++++
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~------~~~~d~~~~~~~~~~~~t~~e~~~ll~~  310 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIEAVAGDE-HA------GTGMDLRMLTYFGGKERSLAELGELAAQ  310 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEEECCCC----C------CHHHHHHHHHHHSCCCCCHHHHHHHHHH
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEEeecCCCC-Cc------cHHHHHHHHhhCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999   99999999887765 21      1467888887789999999999999999


Q ss_pred             cCCceeEEEEcCCcceEEEEeC
Q 022515          275 AGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       275 aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      +||+++++.+.++ .++||+++
T Consensus       311 aGf~~~~~~~~~~-~~vie~r~  331 (332)
T 3i53_A          311 AGLAVRAAHPISY-VSIVEMTA  331 (332)
T ss_dssp             TTEEEEEEEECSS-SEEEEEEE
T ss_pred             CCCEEEEEEECCC-cEEEEEee
Confidence            9999999999988 99999985

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=1.9e-42  Score=310.68  Aligned_cols=291  Identities=49%  Similarity=0.917  Sum_probs=239.2

Q ss_pred             CCCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCC---Ccchhh---------
Q 022515            2 NLIDGDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTIN---PSKSRC---------   69 (296)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~---~~~l~~---------   69 (296)
                      |-|...++++++++...+++++.|++.+++|++++++|||++|++.++|.|++|||+++|++   ++.++|         
T Consensus         3 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~g   82 (352)
T 1fp2_A            3 SSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNG   82 (352)
T ss_dssp             -----CCSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTT
T ss_pred             ccccCCChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCC
Confidence            56778888999999999999999999999999999999999998633599999999999996   444544         


Q ss_pred             ----------------------------------------------hHHHhhh-cCCCChhhhhcCCCchhhcccCchHH
Q 022515           70 ----------------------------------------------QLRTWFQ-NDDPTPFDTAHGKTLWEYAGDEPKLN  102 (296)
Q Consensus        70 ----------------------------------------------~l~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~  102 (296)
                                                                    .|.++++ ++. ++|...+|.++|+++.++|+..
T Consensus        83 ll~~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~  161 (352)
T 1fp2_A           83 FFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYN  161 (352)
T ss_dssp             SEEEEESSSEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHH
T ss_pred             eEEEecCCCCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHH
Confidence                                                          1222233 332 5666667778899999999999


Q ss_pred             HHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEecc
Q 022515          103 NFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGD  182 (296)
Q Consensus       103 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D  182 (296)
                      ..|...|........+. ++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..+++++.+|
T Consensus       162 ~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v~~~~~d  239 (352)
T 1fp2_A          162 TSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG-SNNLTYVGGD  239 (352)
T ss_dssp             HHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-BTTEEEEECC
T ss_pred             HHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc-CCCcEEEecc
Confidence            99999999888776666 777732377889999999999999999999999999999999999999984 4569999999


Q ss_pred             CCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccc
Q 022515          183 MFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTE  262 (296)
Q Consensus       183 ~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  262 (296)
                      +++++|+||+|+++++||+|+++++.++|++++++|+|.++||+++|.|...++....+........+++.|+. .+++.
T Consensus       240 ~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~g~~  318 (352)
T 1fp2_A          240 MFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKE  318 (352)
T ss_dssp             TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCC
T ss_pred             ccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-ccCCC
Confidence            99877789999999999999999999999999999997112799999999887654321011233467777776 56889


Q ss_pred             cCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          263 RDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       263 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      |+.++|.++++++||+++++.+.++..++||++|
T Consensus       319 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  352 (352)
T 1fp2_A          319 RNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP  352 (352)
T ss_dssp             EEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence            9999999999999999999999888889999987

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.1e-42  Score=307.19  Aligned_cols=269  Identities=23%  Similarity=0.357  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHH---------------------
Q 022515           14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR---------------------   72 (296)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~---------------------   72 (296)
                      .+...+++++.|++.+++|++++++|||++|.+  +|.|++|||+++|++++.++|.|+                     
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~   84 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPT   84 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEecCHH
Confidence            677899999999999999999999999999986  799999999999999999888221                     


Q ss_pred             ------------------------------HhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHHH
Q 022515           73 ------------------------------TWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIH  122 (296)
Q Consensus        73 ------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~  122 (296)
                                                    ++++++. ++|+..+|.++|+++.++|+....|.+.| .........+++
T Consensus        85 s~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~  162 (334)
T 2ip2_A           85 SHLLRDVEGSFRDMVLFYGEEFHAAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPR  162 (334)
T ss_dssp             HHTTSSSTTCSHHHHHHHTTHHHHHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHH
T ss_pred             HHHHhCCCccHHHHHHHhcCchhhHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHH
Confidence                                          1122232 56666667788999999999999999999 887777788888


Q ss_pred             hcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCC-ccceeEe
Q 022515          123 KCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAIS-PADAVLL  195 (296)
Q Consensus       123 ~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p-~~D~v~~  195 (296)
                      .++  +++ .+|||||||+|.++..+++++|+.+++++|+|.+++.+++      ..+|++++.+|+++++| +||+|++
T Consensus       163 ~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~  239 (334)
T 2ip2_A          163 LLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLL  239 (334)
T ss_dssp             HSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEE
T ss_pred             hCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEE
Confidence            887  666 9999999999999999999999999999999888888875      25799999999998766 4999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                      .+++|+|+++++.++|++++++|+|   ||+++|.|...++....    .....+++.|+...+|+.|+.++|.++++++
T Consensus       240 ~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  312 (334)
T 2ip2_A          240 SRIIGDLDEAASLRLLGNCREAMAG---DGRVVVIERTISASEPS----PMSVLWDVHLFMACAGRHRTTEEVVDLLGRG  312 (334)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEEECCBCSSSCC----HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHT
T ss_pred             chhccCCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCCc----chhHHhhhHhHhhCCCcCCCHHHHHHHHHHC
Confidence            9999999999999999999999999   99999999887765332    2345778888777789999999999999999


Q ss_pred             CCceeEEEEcCCcceEEEEeC
Q 022515          276 GFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       276 Gf~~~~~~~~~~~~~vi~~~~  296 (296)
                      ||+++++.+.++..++|+++|
T Consensus       313 Gf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          313 GFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             TEEEEEEEEETTTEEEEEEEE
T ss_pred             CCceeEEEECCCCCEEEEEEe
Confidence            999999999988899999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=2.8e-41  Score=303.83  Aligned_cols=289  Identities=50%  Similarity=0.901  Sum_probs=238.0

Q ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCC---CcchhhhHH----------
Q 022515            6 GDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTIN---PSKSRCQLR----------   72 (296)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~---~~~l~~~l~----------   72 (296)
                      |.+.++++++...+++++.|++.+++|++|+++|||++|++.++|.|++|||+++|++   ++.++|.|+          
T Consensus         1 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~   80 (358)
T 1zg3_A            1 GSEESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAK   80 (358)
T ss_dssp             CTTTSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEE
T ss_pred             CCchHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEE
Confidence            3455788899999999999999999999999999999998633599999999999995   444444222          


Q ss_pred             -----------------------------------------------------HhhhcCC-CChhhhhcCCCchhhcccC
Q 022515           73 -----------------------------------------------------TWFQNDD-PTPFDTAHGKTLWEYAGDE   98 (296)
Q Consensus        73 -----------------------------------------------------~~~~~~~-~~~~~~~~g~~~~~~~~~~   98 (296)
                                                                           ++++++. .++|+.++|.++|+++.++
T Consensus        81 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~  160 (358)
T 1zg3_A           81 TIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKD  160 (358)
T ss_dssp             EEECCSSSSCCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSG
T ss_pred             ecccccccCCCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcC
Confidence                                                                 1122221 1455555667789999999


Q ss_pred             chHHH--HHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCe
Q 022515           99 PKLNN--FFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANL  176 (296)
Q Consensus        99 ~~~~~--~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri  176 (296)
                      |+...  .|.+.|........ .+++.+++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ ..++
T Consensus       161 p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~v  238 (358)
T 1zg3_A          161 SESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENL  238 (358)
T ss_dssp             GGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC-CSSE
T ss_pred             hhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc-CCCc
Confidence            99988  99999998776665 78888832367788999999999999999999999999999999999998884 4569


Q ss_pred             eEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515          177 KYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV  256 (296)
Q Consensus       177 ~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  256 (296)
                      +++.+|+++++|.||+|+++++||+|+++++.++|++++++|+|.++||+++|.|...++....+........+++.|+.
T Consensus       239 ~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~  318 (358)
T 1zg3_A          239 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT  318 (358)
T ss_dssp             EEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH
T ss_pred             EEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc
Confidence            99999999977789999999999999999999999999999996111699999999887654321011234577888877


Q ss_pred             hcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          257 LLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      ..+|+.||.++|.++++++||+++++.+.++..++||++|
T Consensus       319 ~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  358 (358)
T 1zg3_A          319 MFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP  358 (358)
T ss_dssp             HHSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred             cCCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence            7789999999999999999999999999888889999987

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=2.3e-41  Score=304.88  Aligned_cols=282  Identities=17%  Similarity=0.214  Sum_probs=226.1

Q ss_pred             CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhh----------------
Q 022515            6 GDHDTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC----------------   69 (296)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~----------------   69 (296)
                      .+.+.+.+++...+++++.|++.+++|++++++|||++|++.++|+|++|||+++|++++.++|                
T Consensus         6 ~~~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~~~   85 (363)
T 3dp7_A            6 TKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLEED   85 (363)
T ss_dssp             CCSCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT
T ss_pred             ccCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEecCC
Confidence            3455678899999999999999999999999999999998644799999999999999999888                


Q ss_pred             ---------------------------------hHHHhhhcCCCChhhhhcC--CCchhhcccCchHHH----HHHHHHH
Q 022515           70 ---------------------------------QLRTWFQNDDPTPFDTAHG--KTLWEYAGDEPKLNN----FFNEAMA  110 (296)
Q Consensus        70 ---------------------------------~l~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~----~f~~~m~  110 (296)
                                                       .|.+++++++ +++...+|  .++|+++.++|+...    .|...|.
T Consensus        86 ~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~  164 (363)
T 3dp7_A           86 RYVLAKAGWFLLNDKMARVNMEFNHDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYS  164 (363)
T ss_dssp             EEEECHHHHHHHHCHHHHHHHHHHHHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTT
T ss_pred             EEecccchHHhhCCCcccchheeecHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhh
Confidence                                             3334455565 56767777  589999999988665    3556555


Q ss_pred             ccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCC
Q 022515          111 SDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMF  184 (296)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~  184 (296)
                      ...   ...++..+.  ..+..+|||||||+|.++..+++++|+++++++|+|.+++.|++      ..+|++++.+|++
T Consensus       165 ~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  239 (363)
T 3dp7_A          165 DQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLL  239 (363)
T ss_dssp             CCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCC
T ss_pred             hhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEcccc
Confidence            432   223444443  35678999999999999999999999999999999999988875      2468999999999


Q ss_pred             CC---CC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc-hhhhhhhhhhhhhhhcC
Q 022515          185 EA---IS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK-SIETQLFFDMLMMVLLT  259 (296)
Q Consensus       185 ~~---~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  259 (296)
                      ++   +| +||+|+++++||+|+++++.++|++++++|+|   ||+++|.|.+.++...... +.......++.++...+
T Consensus       240 ~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (363)
T 3dp7_A          240 DRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGN  316 (363)
T ss_dssp             SSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCC
Confidence            84   56 59999999999999999999999999999999   9999999988876533210 00001122333344456


Q ss_pred             ccccCHHHHHHHHHhcCCceeEEEEcCC-cceEEEEeC
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKIIPILG-LRSLIEVYP  296 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~  296 (296)
                      ++.||.+||.++|+++||+++++.+..+ ..++|+++|
T Consensus       317 ~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          317 SKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             CCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred             CcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence            8899999999999999999999997654 488999875

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=3.6e-40  Score=298.01  Aligned_cols=282  Identities=32%  Similarity=0.571  Sum_probs=222.1

Q ss_pred             hhhhhHHHHHHH--HHHHHHHHHHHHHHHHHcCcchhcccCCC-C---CCHHHHHHHcCC------CCcchhhhHHHh--
Q 022515            9 DTELLEAQTHVW--NHIFNFINSMTLKCAIQLGIPDIISKHGK-P---MTLNELVSALTI------NPSKSRCQLRTW--   74 (296)
Q Consensus         9 ~~~~~~~~~~~~--~~~~g~~~~~~l~~a~~l~lf~~L~~~~~-~---~t~~eLA~~~~~------~~~~l~~~l~~~--   74 (296)
                      .++.+++...++  +++.|++.+++|++|++||||++|++. + |   .|++|||+++|+      +++.++|.|+..  
T Consensus        16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~   94 (372)
T 1fp1_D           16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS   94 (372)
T ss_dssp             ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh
Confidence            346777888888  999999999999999999999999863 4 6   999999999999      445555533211  


Q ss_pred             ------------------------------------------------------------hhcCCCChhhhhcCCCchhh
Q 022515           75 ------------------------------------------------------------FQNDDPTPFDTAHGKTLWEY   94 (296)
Q Consensus        75 ------------------------------------------------------------~~~~~~~~~~~~~g~~~~~~   94 (296)
                                                                                  ++++..++|+..+|.++|++
T Consensus        95 ~gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~  174 (372)
T 1fp1_D           95 YSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEF  174 (372)
T ss_dssp             TTSEEEEEEECTTSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------C
T ss_pred             CCceEecccccCCCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHH
Confidence                                                                        11220134444445677888


Q ss_pred             cccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCC
Q 022515           95 AGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLA  174 (296)
Q Consensus        95 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~  174 (296)
                      +.++|+....|.+.|..........+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.++ ...
T Consensus       175 ~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~-~~~  252 (372)
T 1fp1_D          175 MGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP-PLS  252 (372)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-CCT
T ss_pred             HHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhh-hcC
Confidence            8899999999999998887777778888875 25677899999999999999999999999999999999999988 456


Q ss_pred             CeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh
Q 022515          175 NLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM  254 (296)
Q Consensus       175 ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~  254 (296)
                      +++++.+|+++++|.||+|+++++||+|+++++.++|++++++|+|   ||+++|.|...++....+........+++.|
T Consensus       253 ~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~  329 (372)
T 1fp1_D          253 GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIVEFILPEEPNTSEESKLVSTLDNLM  329 (372)
T ss_dssp             TEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred             CCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEEEeccCCCCccchHHHHHHHhhHHH
Confidence            7999999999877779999999999999999999999999999999   9999999998876543311111345677777


Q ss_pred             hhhcCccccCHHHHHHHHHhcCCceeEEEEc-CCcceEEEEeC
Q 022515          255 MVLLTGTERDEKEWTKLFTYAGFSDYKIIPI-LGLRSLIEVYP  296 (296)
Q Consensus       255 ~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~  296 (296)
                      +...+++.|+.++|.++++++||+++++.+. .+..+|||++|
T Consensus       330 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          330 FITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             HHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             HhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence            7656789999999999999999999999984 55249999987

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=1.8e-38  Score=285.69  Aligned_cols=270  Identities=24%  Similarity=0.405  Sum_probs=227.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhh-------------------
Q 022515           15 AQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWF-------------------   75 (296)
Q Consensus        15 ~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~-------------------   75 (296)
                      ...++++++.|++.+++|.+++++|||++|.+  +|.|++|||+++|++++.++|.|+...                   
T Consensus        19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s   96 (360)
T 1tw3_A           19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVG   96 (360)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTG
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeCHHH
Confidence            35688999999999999999999999999975  799999999999999999888333221                   


Q ss_pred             -----------------------------------hcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHH
Q 022515           76 -----------------------------------QNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVM  120 (296)
Q Consensus        76 -----------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~  120 (296)
                                                         +++. ++|+..+|.++|+++..+|+....|...|..........+
T Consensus        97 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l  175 (360)
T 1tw3_A           97 ELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAP  175 (360)
T ss_dssp             GGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHH
T ss_pred             HHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHH
Confidence                                               1121 3334444567888888888888899999998887777888


Q ss_pred             HHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCCc-ccee
Q 022515          121 IHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAISP-ADAV  193 (296)
Q Consensus       121 ~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p~-~D~v  193 (296)
                      ++.++  +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++      ..++++++.+|+++++|. ||+|
T Consensus       176 ~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v  253 (360)
T 1tw3_A          176 AAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAI  253 (360)
T ss_dssp             HHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEE
T ss_pred             HHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEE
Confidence            88887  77889999999999999999999999999999999888888765      346899999999986664 9999


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee-eCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHH
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI-RENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF  272 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll  272 (296)
                      ++.+++|+|+++++.++|++++++|+|   ||+++|.|.. .++....    .....+++.|+...+++.++.++|.+++
T Consensus       254 ~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~e~~~ll  326 (360)
T 1tw3_A          254 ILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIHERDDLHENSFN----EQFTELDLRMLVFLGGALRTREKWDGLA  326 (360)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHHSCCCCBHHHHHHHH
T ss_pred             EEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEEEeccCCCCCc----chhhhccHHHhhhcCCcCCCHHHHHHHH
Confidence            999999999999989999999999999   9999999988 5543221    2335677777766789999999999999


Q ss_pred             HhcCCceeEEEEcCCc-----ceEEEEeC
Q 022515          273 TYAGFSDYKIIPILGL-----RSLIEVYP  296 (296)
Q Consensus       273 ~~aGf~~~~~~~~~~~-----~~vi~~~~  296 (296)
                      +++||+++++.+.++.     .++|+++|
T Consensus       327 ~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (360)
T 1tw3_A          327 ASAGLVVEEVRQLPSPTIPYDLSLLVLAP  355 (360)
T ss_dssp             HHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             HHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence            9999999999988765     78999875

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=7.5e-39  Score=289.50  Aligned_cols=275  Identities=22%  Similarity=0.345  Sum_probs=224.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh-----c---C--C-
Q 022515           11 ELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ-----N---D--D-   79 (296)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~-----~---~--~-   79 (296)
                      ...+....+++++.|++.+++|++++++|||++|.+  +|.|++|||+++|++++.++|.|+....     .   +  . 
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y   89 (374)
T 1qzz_A           12 PTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPL   89 (374)
T ss_dssp             CCHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCC
T ss_pred             CCchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEE
Confidence            345567789999999999999999999999999975  7999999999999999998884443221     0   1  0 


Q ss_pred             --------------------------------------------CChhhhhcCCCchhhcccCchHHHHHHHHHHccchh
Q 022515           80 --------------------------------------------PTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWL  115 (296)
Q Consensus        80 --------------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~  115 (296)
                                                                  .++|...+|.++|+++..+++....|...|......
T Consensus        90 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~  169 (374)
T 1qzz_A           90 RPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDL  169 (374)
T ss_dssp             EECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTT
T ss_pred             EEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHh
Confidence                                                        012222334567777777888888888888887777


Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAISP  189 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p~  189 (296)
                      ....+++.++  +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++      ..++++++.+|+++++|.
T Consensus       170 ~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  247 (374)
T 1qzz_A          170 AYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPV  247 (374)
T ss_dssp             TTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC
Confidence            7788888887  67789999999999999999999999999999999888888775      346899999999986664


Q ss_pred             -cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee--eeCCCCCCCchhhhhhhhhhhhhhhcCccccCHH
Q 022515          190 -ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM--IRENKKGDDKSIETQLFFDMLMMVLLTGTERDEK  266 (296)
Q Consensus       190 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~  266 (296)
                       ||+|++.+++|+|+++++.++|++++++|+|   ||+++|.|.  ..++....    .....+++.|+...+++.++.+
T Consensus       248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  320 (374)
T 1qzz_A          248 TADVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVLDRADVEGDGADR----FFSTLLDLRMLTFMGGRVRTRD  320 (374)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEECCH-------H----HHHHHHHHHHHHHHSCCCCCHH
T ss_pred             CCCEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEEechhhcCCCCCc----chhhhcchHHHHhCCCcCCCHH
Confidence             9999999999999999888999999999999   999999998  76543221    2345677777777789999999


Q ss_pred             HHHHHHHhcCCceeEEEEcCCcc-----eEEEEeC
Q 022515          267 EWTKLFTYAGFSDYKIIPILGLR-----SLIEVYP  296 (296)
Q Consensus       267 e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~  296 (296)
                      +|.++++++||+++++.+.++..     ++|++++
T Consensus       321 ~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (374)
T 1qzz_A          321 EVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA  355 (374)
T ss_dssp             HHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             HHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence            99999999999999999988776     8999874

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=4.9e-38  Score=281.96  Aligned_cols=270  Identities=17%  Similarity=0.212  Sum_probs=212.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhh-----------------
Q 022515           13 LEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWF-----------------   75 (296)
Q Consensus        13 ~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~-----------------   75 (296)
                      ++....+++++.|++.+++|++|+++|||++|.   +|.|++|||+++|++++.++|.|+...                 
T Consensus        22 l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~~~y~~t~~   98 (352)
T 3mcz_A           22 LTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGMVEGKAAILLHALAALGLLTKEGDAFRNTAL   98 (352)
T ss_dssp             CCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecCCeeecCHH
Confidence            344445999999999999999999999999996   399999999999999999988443221                 


Q ss_pred             -----hcCCCC---hhhh----------------hcCCCc----hhhcccCchHHHHHHHHHHccchhchHHHHHhcccc
Q 022515           76 -----QNDDPT---PFDT----------------AHGKTL----WEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDV  127 (296)
Q Consensus        76 -----~~~~~~---~~~~----------------~~g~~~----~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~  127 (296)
                           .++.+.   ++..                ..|.+.    ..++.++++....|...|...... ...+++.++  
T Consensus        99 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~--  175 (352)
T 3mcz_A           99 TERYLTTTSADYIGPIVEHQYLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG--  175 (352)
T ss_dssp             HHHHHSTTCTTCCHHHHHHHHTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG--
T ss_pred             HHhhccCCChhhHHHHHHHhHHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC--
Confidence                 111110   0000                011111    123356777788899888873322 236788887  


Q ss_pred             cCC-CCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-C--CCc-cceeEeh
Q 022515          128 FEG-LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-A--ISP-ADAVLLK  196 (296)
Q Consensus       128 ~~~-~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~--~p~-~D~v~~~  196 (296)
                      +.+ ..+|||||||+|.++..+++++|+.+++++|+|.+++.+++      ..+|++++.+|+++ +  .++ ||+|+++
T Consensus       176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~  255 (352)
T 3mcz_A          176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLN  255 (352)
T ss_dssp             GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred             CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEe
Confidence            556 89999999999999999999999999999999888887765      35789999999998 4  554 9999999


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc-CccccCHHHHHHHHHhc
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL-TGTERDEKEWTKLFTYA  275 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~rt~~e~~~ll~~a  275 (296)
                      +++|+|+++++.++|++++++|+|   ||+++|.|.+.++....+   ....++++.|+..+ +++.|+.++|+++++++
T Consensus       256 ~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  329 (352)
T 3mcz_A          256 DCLHYFDAREAREVIGHAAGLVKP---GGALLILTMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGVVRDA  329 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEEEECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHT
T ss_pred             cccccCCHHHHHHHHHHHHHHcCC---CCEEEEEEeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHHHHHC
Confidence            999999999999999999999999   999999999888765432   33467888887655 78999999999999999


Q ss_pred             CCceeEEEEcCCcceEEEEeC
Q 022515          276 GFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       276 Gf~~~~~~~~~~~~~vi~~~~  296 (296)
                      ||++++..  .+...++.++|
T Consensus       330 Gf~~~~~~--~g~~~l~~a~k  348 (352)
T 3mcz_A          330 GLAVGERS--IGRYTLLIGQR  348 (352)
T ss_dssp             TCEEEEEE--ETTEEEEEEEC
T ss_pred             CCceeeec--cCceEEEEEec
Confidence            99999843  24577777765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=4.6e-37  Score=276.40  Aligned_cols=274  Identities=21%  Similarity=0.376  Sum_probs=224.8

Q ss_pred             chhhhhHHHHHHHHHHH-HHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHh------------
Q 022515            8 HDTELLEAQTHVWNHIF-NFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTW------------   74 (296)
Q Consensus         8 ~~~~~~~~~~~~~~~~~-g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~------------   74 (296)
                      ++++++++..++++++. |++.+++|++++++|||++|++  +|.|++|||+++|++++.++|.|+..            
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~  100 (359)
T 1x19_A           23 SNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLEDGK  100 (359)
T ss_dssp             CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred             CccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeCCe
Confidence            45577888889999996 8999999999999999999986  79999999999999999998844332            


Q ss_pred             ----------hhcCCC---C---hhhh-----------------hcCCCchhhcccCch---HHHHHHHHHHccch-hch
Q 022515           75 ----------FQNDDP---T---PFDT-----------------AHGKTLWEYAGDEPK---LNNFFNEAMASDAW-LAT  117 (296)
Q Consensus        75 ----------~~~~~~---~---~~~~-----------------~~g~~~~~~~~~~~~---~~~~f~~~m~~~~~-~~~  117 (296)
                                +..+.+   .   ++..                 ..|.+ |+++.++|+   ....|...|..... ...
T Consensus       101 y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~  179 (359)
T 1x19_A          101 WSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAI  179 (359)
T ss_dssp             EEECHHHHHHSSSSCSBTTBCCHHHHHHHHHHHHHTGGGHHHHHTTSCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHH
T ss_pred             EecCHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccCchhhHHHHHHHHHHHHhccchhH
Confidence                      222211   0   0000                 01233 778888888   88999999999887 777


Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCCcc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AISPA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~  190 (296)
                      ..+++.++  +.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++      ..+|++++.+|+++ +.+++
T Consensus       180 ~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  257 (359)
T 1x19_A          180 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEA  257 (359)
T ss_dssp             HHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCC
Confidence            88888888  77889999999999999999999999999999999889988875      35689999999998 66678


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cCccc----cCH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LTGTE----RDE  265 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----rt~  265 (296)
                      |+|++.+++|+|+++++.++|++++++|+|   ||+++|.|...++. ..+   .....+  .|+.. .++++    ++.
T Consensus       258 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~-~~~---~~~~~~--~~~~~~~~g~~~~~~~t~  328 (359)
T 1x19_A          258 DAVLFCRILYSANEQLSTIMCKKAFDAMRS---GGRLLILDMVIDDP-ENP---NFDYLS--HYILGAGMPFSVLGFKEQ  328 (359)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEEEECCCCT-TSC---CHHHHH--HHGGGGGSSCCCCCCCCG
T ss_pred             CEEEEechhccCCHHHHHHHHHHHHHhcCC---CCEEEEEecccCCC-CCc---hHHHHH--HHHHhcCCCCcccCCCCH
Confidence            999999999999999899999999999999   99999999887765 221   122223  33333 34667    899


Q ss_pred             HHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          266 KEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       266 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      ++|.++++++||+++++.+.+ ..++|+++|
T Consensus       329 ~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k  358 (359)
T 1x19_A          329 ARYKEILESLGYKDVTMVRKY-DHLLVQAVK  358 (359)
T ss_dssp             GGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred             HHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence            999999999999999999987 778999876

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=4.1e-37  Score=274.01  Aligned_cols=271  Identities=19%  Similarity=0.255  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHH----------------------h
Q 022515           17 THVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRT----------------------W   74 (296)
Q Consensus        17 ~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~----------------------~   74 (296)
                      ..+++++.|++.+++|++++++|||++|++  +|.|++|||+++|++++.++|.|+.                      +
T Consensus         8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~~   85 (335)
T 2r3s_A            8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMF   85 (335)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEecCCEEecCHHHHHH
Confidence            578999999999999999999999999986  7999999999999999999884432                      2


Q ss_pred             hhcCCCC---hh---------hhh---------cCC-Cc--hhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCC
Q 022515           75 FQNDDPT---PF---------DTA---------HGK-TL--WEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEG  130 (296)
Q Consensus        75 ~~~~~~~---~~---------~~~---------~g~-~~--~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~  130 (296)
                      +.++.+.   ++         ...         .|. .+  |+++.++++....|...|..........+++.+++.+.+
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (335)
T 2r3s_A           86 LDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIE  165 (335)
T ss_dssp             TCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHTC--CC
T ss_pred             hccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcccccCC
Confidence            2221110   00         000         021 22  677778888888999999888777777788888721177


Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCCc-cceeEehhhhccC
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AISP-ADAVLLKWILHDW  202 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p~-~D~v~~~~vlh~~  202 (296)
                      ..+|||||||+|.++..+++.+|+.+++++|++.+++.+++      ..+|++++.+|+++ +.++ ||+|++++++|+|
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~  245 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHF  245 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhccC
Confidence            89999999999999999999999999999999988888775      35689999999998 6664 9999999999999


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc-CccccCHHHHHHHHHhcCCceeE
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL-TGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                      +++++.++|++++++|+|   ||+++|.|...++....+   .....+++.|+... +++.++.++|.++++++||+.++
T Consensus       246 ~~~~~~~~l~~~~~~L~p---gG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~  319 (335)
T 2r3s_A          246 DVATCEQLLRKIKTALAV---EGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQ  319 (335)
T ss_dssp             CHHHHHHHHHHHHHHEEE---EEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEE
T ss_pred             CHHHHHHHHHHHHHhCCC---CcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeee
Confidence            999999999999999999   999999998877654332   33456777777766 78999999999999999999999


Q ss_pred             EEEcCCcceEEEEe
Q 022515          282 IIPILGLRSLIEVY  295 (296)
Q Consensus       282 ~~~~~~~~~vi~~~  295 (296)
                      +.+.++..++|+++
T Consensus       320 ~~~~~~~~~~i~~~  333 (335)
T 2r3s_A          320 LHSLPTTQQQVIVA  333 (335)
T ss_dssp             EECCTTSSSEEEEE
T ss_pred             EEECCCCceeEEEe
Confidence            99988777877775

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.88  E-value=3.8e-22  Score=171.16  Aligned_cols=157  Identities=17%  Similarity=0.243  Sum_probs=121.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~  197 (296)
                      .+++.+|||||||+|.++..+++++  |+++++++|+ +.|++.|++      ...+|+++++|+.+ +.+++|+|++..
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            4677899999999999999999975  6789999999 999998876      45789999999998 777899999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhh--hhcC----------------
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM--VLLT----------------  259 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----------------  259 (296)
                      +||++++++...+|++++++|+|   ||++++.|....+....     ...+.+++..  ...|                
T Consensus       148 ~l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~e~~~~~~~~~-----~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~  219 (261)
T 4gek_A          148 TLQFLEPSERQALLDKIYQGLNP---GGALVLSEKFSFEDAKV-----GELLFNMHHDFKRANGYSELEISQKRSMLENV  219 (261)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCSSHHH-----HHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHH
T ss_pred             eeeecCchhHhHHHHHHHHHcCC---CcEEEEEeccCCCCHHH-----HHHHHHHHHHHHHHcCCCHHHHHHHHhhhccc
Confidence            99999988888899999999999   99999999876553211     0011111100  0000                


Q ss_pred             ccccCHHHHHHHHHhcCCceeEEEE-cCCcceEE
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLI  292 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi  292 (296)
                      -...|.+++.++|++|||+.++++- ..++.++|
T Consensus       220 ~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~i  253 (261)
T 4gek_A          220 MLTDSVETHKARLHKAGFEHSELWFQCFNFGSLV  253 (261)
T ss_dssp             CCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEE
T ss_pred             ccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEE
Confidence            1235889999999999999988753 44455544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.85  E-value=1.6e-20  Score=158.30  Aligned_cols=172  Identities=15%  Similarity=0.195  Sum_probs=127.0

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC-ccce
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS-PADA  192 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p-~~D~  192 (296)
                      .++..+. ...++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++   ...+++++.+|+.+ +.+ .||+
T Consensus        34 ~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~  112 (234)
T 3dtn_A           34 VSVSIAS-VDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM  112 (234)
T ss_dssp             HHHHTCC-CSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred             HHHHHhh-cCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence            3444443 134668999999999999999999999999999999 999988876   33489999999998 544 5999


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh-------------hhhcC
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM-------------MVLLT  259 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~  259 (296)
                      |++..++|++++++...+|++++++|+|   ||++++.+...++....... ....+.....             .....
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKE---SGIFINADLVHGETAFIENL-NKTIWRQYVENSGLTEEEIAAGYERSKL  188 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECBCSSHHHHHH-HHHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCChhhhhH-HHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence            9999999999998877899999999999   99999999876543211000 0000100000             00012


Q ss_pred             ccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY  295 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  295 (296)
                      ...++.+++.++|++|||+++++.......+++..+
T Consensus       189 ~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~  224 (234)
T 3dtn_A          189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGR  224 (234)
T ss_dssp             CCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEE
T ss_pred             ccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEE
Confidence            344588999999999999999988776555555443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.81  E-value=4.2e-19  Score=147.90  Aligned_cols=156  Identities=16%  Similarity=0.198  Sum_probs=125.5

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-  188 (296)
                      ..++..+.  ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.+++     ...++++..+|+.+ +.+ 
T Consensus        27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            45555555  6677899999999999999999987 8889999999 999988876     33589999999988 544 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                       .||+|++..++|++++.  ..+|++++++|+|   ||++++.+..........+                ....++.++
T Consensus       105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~----------------~~~~~~~~~  163 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAIIDWKKEERDKGPP----------------PEEVYSEWE  163 (219)
T ss_dssp             SCEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEEEECSSCCSSSCC----------------GGGSCCHHH
T ss_pred             CCeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEEEecccccccCCc----------------hhcccCHHH
Confidence             49999999999999875  4889999999999   9999999876554322210                012348999


Q ss_pred             HHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          268 WTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      |.++++++||+++++.........+.+++
T Consensus       164 ~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k  192 (219)
T 3dh0_A          164 VGLILEDAGIRVGRVVEVGKYCFGVYAMI  192 (219)
T ss_dssp             HHHHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence            99999999999999988877666666553

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.80  E-value=9e-19  Score=150.87  Aligned_cols=158  Identities=20%  Similarity=0.167  Sum_probs=123.2

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS  188 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p  188 (296)
                      ...+++.++  ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +++
T Consensus        50 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           50 TDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence            345566666  6678899999999999999999987 689999999 899888765      35689999999988 654


Q ss_pred             --ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHH
Q 022515          189 --PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEK  266 (296)
Q Consensus       189 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~  266 (296)
                        .||+|++..++||+++.  ..+|++++++|+|   ||++++.+.........    .....++........+...+.+
T Consensus       127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  197 (273)
T 3bus_A          127 DASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIADFVLLAPVEG----AKKEAVDAFRAGGGVLSLGGID  197 (273)
T ss_dssp             TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEEEEEESSCCCH----HHHHHHHHHHHHHTCCCCCCHH
T ss_pred             CCCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEEEeeccCCCCh----hHHHHHHHHHhhcCccCCCCHH
Confidence              49999999999999876  4889999999999   99999999876543221    1111122111112345677999


Q ss_pred             HHHHHHHhcCCceeEEEEcC
Q 022515          267 EWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       267 e~~~ll~~aGf~~~~~~~~~  286 (296)
                      +|.++++++||+++++...+
T Consensus       198 ~~~~~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          198 EYESDVRQAELVVTSTVDIS  217 (273)
T ss_dssp             HHHHHHHHTTCEEEEEEECH
T ss_pred             HHHHHHHHcCCeEEEEEECc
Confidence            99999999999999887653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.80  E-value=1.1e-18  Score=145.46  Aligned_cols=163  Identities=13%  Similarity=0.150  Sum_probs=122.1

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC-ccceeE
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS-PADAVL  194 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p-~~D~v~  194 (296)
                      .+++.+.  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ...+++++.+|+.+ +.+ .||+|+
T Consensus        36 ~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~  111 (220)
T 3hnr_A           36 DILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV  111 (220)
T ss_dssp             HHHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred             HHHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence            4455554  457789999999999999999987  679999999 999998876 33689999999998 554 599999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh--------hhhcCccccCHH
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM--------MVLLTGTERDEK  266 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~rt~~  266 (296)
                      +..++|++++++...+|++++++|+|   ||.+++.+........      .........        .........+.+
T Consensus       112 ~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (220)
T 3hnr_A          112 STYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFADTIFADQDA------YDKTVEAAKQRGFHQLANDLQTEYYTRIP  182 (220)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEEEECBSSHHH------HHHHHHHHHHTTCHHHHHHHHHSCCCBHH
T ss_pred             ECcchhcCChHHHHHHHHHHHHhcCC---CCEEEEEeccccChHH------HHHHHHHHHhCCCccchhhcchhhcCCHH
Confidence            99999999998877799999999999   9999999865543211      000110000        000011234889


Q ss_pred             HHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515          267 EWTKLFTYAGFSDYKIIPILGLRSLIEVY  295 (296)
Q Consensus       267 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  295 (296)
                      +|.++++++||+++.+.. ....+++.++
T Consensus       183 ~~~~~l~~aGf~v~~~~~-~~~~w~~~~~  210 (220)
T 3hnr_A          183 VMQTIFENNGFHVTFTRL-NHFVWVMEAT  210 (220)
T ss_dssp             HHHHHHHHTTEEEEEEEC-SSSEEEEEEE
T ss_pred             HHHHHHHHCCCEEEEeec-cceEEEEeeh
Confidence            999999999998776544 4566777665

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.80  E-value=2.3e-19  Score=149.03  Aligned_cols=165  Identities=18%  Similarity=0.206  Sum_probs=120.2

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-  188 (296)
                      ..+++.++  .++. +|||||||+|.++..+++. |+.+++++|+ +.+++.+++      ..++++++.+|+.+ +++ 
T Consensus        34 ~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (219)
T 3dlc_A           34 ENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED  109 (219)
T ss_dssp             HHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred             HHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence            34444444  3344 9999999999999999998 8889999999 999988876      35689999999998 655 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhh-hhh----hhhhhhcCccc
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQL-FFD----MLMMVLLTGTE  262 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~g~~  262 (296)
                       .||+|++..++|++++..  .+|++++++|+|   ||++++.+...+.....    .... ...    +..........
T Consensus       110 ~~~D~v~~~~~l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  180 (219)
T 3dlc_A          110 NYADLIVSRGSVFFWEDVA--TAFREIYRILKS---GGKTYIGGGFGNKELRD----SISAEMIRKNPDWKEFNRKNISQ  180 (219)
T ss_dssp             TCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEECCSSHHHHH----HHHHHHHHHCTTHHHHHHHHSSH
T ss_pred             ccccEEEECchHhhccCHH--HHHHHHHHhCCC---CCEEEEEeccCcHHHHH----HHHHHHHHhHHHHHhhhhhcccc
Confidence             499999999999997654  789999999999   99999887543321000    0000 000    00000012334


Q ss_pred             cCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515          263 RDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY  295 (296)
Q Consensus       263 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  295 (296)
                      ++.++|.++|+++||+++++.......+++..+
T Consensus       181 ~~~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k  213 (219)
T 3dlc_A          181 ENVERFQNVLDEIGISSYEIILGDEGFWIIISK  213 (219)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred             CCHHHHHHHHHHcCCCeEEEEecCCceEEEEec
Confidence            488999999999999999998876665555443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.79  E-value=1.4e-18  Score=148.78  Aligned_cols=156  Identities=15%  Similarity=0.260  Sum_probs=123.2

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~  190 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++   ..++++++.+|+.+ +.+  .|
T Consensus        45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            45555555  6678899999999999999999987 789999999 899988876   22799999999988 554  49


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++..++||+++++...+|++++++|+|   ||++++.+...+......   .   .+.. .....+...++.++|.+
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~~~  191 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLITDYCATEKENWD---D---EFKE-YVKQRKYTLITVEEYAD  191 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEESCGGGCC---H---HHHH-HHHHHTCCCCCHHHHHH
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEEEeccCCcccch---H---HHHH-HHhcCCCCCCCHHHHHH
Confidence            999999999999877788999999999999   999999998766521110   1   1111 01112345669999999


Q ss_pred             HHHhcCCceeEEEEcC
Q 022515          271 LFTYAGFSDYKIIPIL  286 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~  286 (296)
                      +++++||+++++....
T Consensus       192 ~l~~~Gf~~~~~~~~~  207 (266)
T 3ujc_A          192 ILTACNFKNVVSKDLS  207 (266)
T ss_dssp             HHHHTTCEEEEEEECH
T ss_pred             HHHHcCCeEEEEEeCC
Confidence            9999999999887653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.79  E-value=1.7e-19  Score=150.99  Aligned_cols=161  Identities=12%  Similarity=0.082  Sum_probs=117.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILH  200 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh  200 (296)
                      .+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++    ...+++++.+|+.+ +.+  .||+|++..++|
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            3478999999999999999999876  9999999 999988876    34889999999988 544  499999999988


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh---cC------------------
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL---LT------------------  259 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------  259 (296)
                      ++..++..++|++++++|+|   ||++++.+...+...... ...........+...   ..                  
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR  190 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEE---EEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCC---CcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheee
Confidence            77777778999999999999   999998876532210000 000000000000000   00                  


Q ss_pred             ccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      ...++ .++.++|+++||+.+++..++....+|+.+|
T Consensus       191 ~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          191 FNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             EECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence            11112 4899999999999999999988888999876

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.78  E-value=9.6e-19  Score=149.73  Aligned_cols=155  Identities=16%  Similarity=0.313  Sum_probs=118.6

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS  188 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p  188 (296)
                      ....+++.+.  ..++.+|||||||+|.++..+++..+  +++++|+ +.+++.+++     ...+++++.+|+.+ +++
T Consensus        25 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~  100 (260)
T 1vl5_A           25 DLAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT  100 (260)
T ss_dssp             CHHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence            3455666655  56788999999999999999999875  9999999 999988875     23689999999988 665


Q ss_pred             --ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh--cCccccC
Q 022515          189 --PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL--LTGTERD  264 (296)
Q Consensus       189 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~rt  264 (296)
                        .||+|++..++|++++..  .+|++++++|+|   ||++++.+...+...      ....++.......  .....++
T Consensus       101 ~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  169 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWK  169 (260)
T ss_dssp             TTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCB
T ss_pred             CCCEEEEEEhhhhHhcCCHH--HHHHHHHHHcCC---CCEEEEEEcCCCCCH------HHHHHHHHHHHhcCccccCCCC
Confidence              499999999999999865  889999999999   999999887665431      1111222111111  1335678


Q ss_pred             HHHHHHHHHhcCCceeEEEEc
Q 022515          265 EKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .++|.++|+++||+++.+...
T Consensus       170 ~~~~~~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          170 KSDWLKMLEEAGFELEELHCF  190 (260)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEE
T ss_pred             HHHHHHHHHHCCCeEEEEEEe
Confidence            999999999999998877654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.78  E-value=7.3e-19  Score=150.72  Aligned_cols=164  Identities=17%  Similarity=0.135  Sum_probs=117.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEehh-hhccCC
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLLKW-ILHDWN  203 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~~~-vlh~~~  203 (296)
                      ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++.. ++|+++
T Consensus        48 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~  125 (263)
T 3pfg_A           48 SPKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA  125 (263)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred             CCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence            3456899999999999999999884  48999999 99999987644589999999998 544 599999998 999997


Q ss_pred             c-hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchh------------h--------hhhhhhhhhhhhc-C--
Q 022515          204 D-EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSI------------E--------TQLFFDMLMMVLL-T--  259 (296)
Q Consensus       204 d-~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~------------~--------~~~~~~~~~~~~~-~--  259 (296)
                      + ++...+|++++++|+|   ||++++.+...++........            .        ....+++.+.... +  
T Consensus       126 ~~~~~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (263)
T 3pfg_A          126 GQAELDAALERFAAHVLP---DGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG  202 (263)
T ss_dssp             HHHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred             CHHHHHHHHHHHHHhcCC---CcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence            5 4667899999999999   888888654333221110000            0        0000111111110 1  


Q ss_pred             ---------ccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          260 ---------GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       260 ---------g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                               .+.+|.++|.++|+++||+++++....+...++.++|
T Consensus       203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K  248 (263)
T 3pfg_A          203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP  248 (263)
T ss_dssp             EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence                     2345899999999999999999877666666666653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.78  E-value=2.5e-18  Score=146.57  Aligned_cols=153  Identities=10%  Similarity=0.057  Sum_probs=118.2

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-  188 (296)
                      ..++..+.  ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +.+ 
T Consensus        26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  102 (256)
T 1nkv_A           26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE  102 (256)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence            44555555  6678899999999999999999988 679999999 999988865      34689999999988 443 


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      .||+|++..++|++++.  .++|++++++|+|   ||++++.+..........   .   ..... ........++.++|
T Consensus       103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~-~~~~~~~~~~~~~~  170 (256)
T 1nkv_A          103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIGEPYWRQLPATE---E---IAQAC-GVSSTSDFLTLPGL  170 (256)
T ss_dssp             CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---H---HHHTT-TCSCGGGSCCHHHH
T ss_pred             CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEecCcccCCCChH---H---HHHHH-hcccccccCCHHHH
Confidence            49999999999999865  4789999999999   999999998765443221   1   11100 00112245699999


Q ss_pred             HHHHHhcCCceeEEEEc
Q 022515          269 TKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~~  285 (296)
                      .++++++||+++++...
T Consensus       171 ~~~l~~aGf~~~~~~~~  187 (256)
T 1nkv_A          171 VGAFDDLGYDVVEMVLA  187 (256)
T ss_dssp             HHHHHTTTBCCCEEEEC
T ss_pred             HHHHHHCCCeeEEEEeC
Confidence            99999999999887654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.78  E-value=4.7e-18  Score=141.15  Aligned_cols=160  Identities=16%  Similarity=0.168  Sum_probs=114.5

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCCCCC--ccceeE
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFEAIS--PADAVL  194 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~~~p--~~D~v~  194 (296)
                      .+++.+. ...+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ...+++++.+|+.+..+  .||+|+
T Consensus        36 ~~~~~l~-~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~  112 (218)
T 3ou2_A           36 AALERLR-AGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF  112 (218)
T ss_dssp             HHHHHHT-TTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred             HHHHHHh-cCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence            3444443 1456679999999999999999998  679999999 999999886 44789999999988432  599999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCc-------cccCHHH
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTG-------TERDEKE  267 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~rt~~e  267 (296)
                      +..++|++++++...+|++++++|+|   ||++++.+...+.......+..  ............+       ...+.++
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAE  187 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCC---CeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHH
Confidence            99999999998778999999999999   9999999876532211100000  0000000000111       2349999


Q ss_pred             HHHHHHhcCCceeEEEEcC
Q 022515          268 WTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~~~  286 (296)
                      |.++++++||++......+
T Consensus       188 ~~~~l~~aGf~v~~~~~~~  206 (218)
T 3ou2_A          188 LTERLTALGWSCSVDEVHP  206 (218)
T ss_dssp             HHHHHHHTTEEEEEEEEET
T ss_pred             HHHHHHHCCCEEEeeeccc
Confidence            9999999999955544433

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.78  E-value=3.7e-18  Score=148.91  Aligned_cols=145  Identities=17%  Similarity=0.289  Sum_probs=115.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~  197 (296)
                      +.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+ +++  .||+|++..
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  158 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  158 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecc
Confidence            5677899999999999999999987 569999999 899888765      35789999999998 654  499999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF  277 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf  277 (296)
                      ++||+++.  ..+|++++++|+|   ||++++.+..........   ....++...    ......+.++|.++++++||
T Consensus       159 ~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~l~~aGf  226 (297)
T 2o57_A          159 AFLHSPDK--LKVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRI----KLHDMGSLGLYRSLAKECGL  226 (297)
T ss_dssp             CGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHH----TCSSCCCHHHHHHHHHHTTE
T ss_pred             hhhhcCCH--HHHHHHHHHHcCC---CeEEEEEEeccCCCCchH---HHHHHHHHh----cCCCCCCHHHHHHHHHHCCC
Confidence            99999984  5889999999999   999999998766543211   111111111    11234589999999999999


Q ss_pred             ceeEEEEc
Q 022515          278 SDYKIIPI  285 (296)
Q Consensus       278 ~~~~~~~~  285 (296)
                      +++++...
T Consensus       227 ~~~~~~~~  234 (297)
T 2o57_A          227 VTLRTFSR  234 (297)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEC
Confidence            99988765

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.77  E-value=1.2e-18  Score=148.30  Aligned_cols=150  Identities=18%  Similarity=0.296  Sum_probs=118.3

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~  190 (296)
                      ..+++.+.  ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++   ...+++++.+|+.+ +.+  .|
T Consensus        83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence            34555555  5577899999999999999999886 557999999 999988876   22689999999987 544  49


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++.+++|++++++...+|++++++|+|   ||++++.+........         ..+    .......++.++|.+
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~  223 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRF---------LVD----KEDSSLTRSDIHYKR  223 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCE---------EEE----TTTTEEEBCHHHHHH
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCcccc---------eec----ccCCcccCCHHHHHH
Confidence            999999999999988888999999999999   9999998865432211         000    011233569999999


Q ss_pred             HHHhcCCceeEEEEcC
Q 022515          271 LFTYAGFSDYKIIPIL  286 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~  286 (296)
                      +++++||+++++....
T Consensus       224 ~l~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          224 LFNESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHHHTCCEEEEEECT
T ss_pred             HHHHCCCEEEEeeecC
Confidence            9999999999987764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.77  E-value=5.8e-18  Score=146.95  Aligned_cols=162  Identities=12%  Similarity=0.169  Sum_probs=121.4

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCcc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~  190 (296)
                      ..+++.++  ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++      ..++++++.+|+.+-...|
T Consensus        54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f  130 (287)
T 1kpg_A           54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  130 (287)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence            34555555  66778999999999999999997774 59999999 899988865      2468999999997622569


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC----CCchh-hhhhhhhhh-hhhhcCccccC
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG----DDKSI-ETQLFFDML-MMVLLTGTERD  264 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~----~~~~~-~~~~~~~~~-~~~~~~g~~rt  264 (296)
                      |+|++..++||+++++...+|++++++|+|   ||++++.+...+....    ..+.. ......+.. .....++...+
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  207 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS  207 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence            999999999999876677999999999999   9999999987654211    00000 000111111 11123566779


Q ss_pred             HHHHHHHHHhcCCceeEEEEc
Q 022515          265 EKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .+++.++++++||+++++...
T Consensus       208 ~~~~~~~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          208 IPMVQECASANGFTVTRVQSL  228 (287)
T ss_dssp             HHHHHHHHHTTTCEEEEEEEC
T ss_pred             HHHHHHHHHhCCcEEEEEEeC
Confidence            999999999999999988765

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.77  E-value=2.5e-18  Score=148.40  Aligned_cols=153  Identities=18%  Similarity=0.351  Sum_probs=116.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~v  198 (296)
                      +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ...+++++.+|+.+ +.+  .||+|++..+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            56778999999999999999999999999999999 899988875     34689999999988 544  4999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh--hhhcCccccCHHHHHHHHHhcC
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM--MVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                      +|++++..  .+|++++++|+|   ||.+++.+.........+.......++....  ....++..++..++.++|+++|
T Consensus       115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG  189 (276)
T 3mgg_A          115 LEHLQSPE--EALKSLKKVLKP---GGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESG  189 (276)
T ss_dssp             GGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred             hhhcCCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence            99999875  789999999999   9999998854322110000001111111111  1123556668889999999999


Q ss_pred             CceeEEEEc
Q 022515          277 FSDYKIIPI  285 (296)
Q Consensus       277 f~~~~~~~~  285 (296)
                      |+++++.+.
T Consensus       190 f~~v~~~~~  198 (276)
T 3mgg_A          190 FEKIRVEPR  198 (276)
T ss_dssp             CEEEEEEEE
T ss_pred             CCeEEEeeE
Confidence            999888754

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.76  E-value=1.5e-17  Score=146.21  Aligned_cols=164  Identities=9%  Similarity=0.052  Sum_probs=122.7

Q ss_pred             HHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEec
Q 022515          109 MASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGG  181 (296)
Q Consensus       109 m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~  181 (296)
                      +..........+++.++ .+.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++      ..++++++.+
T Consensus        97 ~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~  174 (312)
T 3vc1_A           97 LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC  174 (312)
T ss_dssp             HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred             hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            33333333345555554 24567899999999999999999986 679999999 999988875      3468999999


Q ss_pred             cCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc
Q 022515          182 DMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL  258 (296)
Q Consensus       182 D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (296)
                      |+.+ +++  .||+|++..++|+++   ...+|++++++|+|   ||++++.+..........  ......+...    .
T Consensus       175 d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~--~~~~~~~~~~----~  242 (312)
T 3vc1_A          175 NMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTITGCWNPRYGQP--SKWVSQINAH----F  242 (312)
T ss_dssp             CTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEEEEEECTTTCSC--CHHHHHHHHH----H
T ss_pred             ChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEEEccccccccch--hHHHHHHHhh----h
Confidence            9998 554  499999999999994   56899999999999   999999998776543211  0111111111    1


Q ss_pred             CccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515          259 TGTERDEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       259 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      ....++.++|.++++++||+++++..+.
T Consensus       243 ~~~~~s~~~~~~~l~~aGf~~~~~~~~~  270 (312)
T 3vc1_A          243 ECNIHSRREYLRAMADNRLVPHTIVDLT  270 (312)
T ss_dssp             TCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred             cCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence            1236689999999999999999887753

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.76  E-value=3.5e-18  Score=144.06  Aligned_cols=163  Identities=20%  Similarity=0.161  Sum_probs=117.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEe-hhhhccCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLL-KWILHDWND  204 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~-~~vlh~~~d  204 (296)
                      .+..+|||||||+|.++..+++.++  +++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|++ ..++|++++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence            4668999999999999999999976  8999999 99999887644679999999988 444 5999995 559998865


Q ss_pred             -hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh--------------------hhhhhhhhhhhhc-Cc--
Q 022515          205 -EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE--------------------TQLFFDMLMMVLL-TG--  260 (296)
Q Consensus       205 -~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~-~g--  260 (296)
                       ++...+|++++++|+|   ||++++.+...++.........                    ......+.++... ++  
T Consensus       117 ~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (239)
T 3bxo_A          117 TEELGAAVASFAEHLEP---GGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGV  193 (239)
T ss_dssp             HHHHHHHHHHHHHTEEE---EEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHhcCC---CeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcc
Confidence             5677999999999999   8888887655443221100000                    0000111111111 11  


Q ss_pred             ---------cccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          261 ---------TERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       261 ---------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                               +.+|.++|.++|+++||++..+....+...+++++|
T Consensus       194 ~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K  238 (239)
T 3bxo_A          194 RHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP  238 (239)
T ss_dssp             EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             eEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence                     345999999999999998777765556677877764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.75  E-value=3.1e-18  Score=150.17  Aligned_cols=166  Identities=13%  Similarity=0.113  Sum_probs=119.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHH-HHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIA-KAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~  197 (296)
                      +.++.+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++      ..++++++.+|+.+ +.+ .||+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            4677899999999999999986 6789999999999 999988875      35679999999988 444 599999999


Q ss_pred             hhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc-hh--hh-h--hh-hhhhhhhhcCc---cccCHH
Q 022515          198 ILHDWNDEE-CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK-SI--ET-Q--LF-FDMLMMVLLTG---TERDEK  266 (296)
Q Consensus       198 vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~-~~--~~-~--~~-~~~~~~~~~~g---~~rt~~  266 (296)
                      ++|++++.. ...+|++++++|+|   ||++++.+...+....... +.  .. .  .. ....+......   ..++.+
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKP---GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA  272 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence            999997664 44689999999999   9999998865543322100 00  00 0  00 00000001111   346999


Q ss_pred             HHHHHHHhcCCceeEEEEcC-CcceEEEEeC
Q 022515          267 EWTKLFTYAGFSDYKIIPIL-GLRSLIEVYP  296 (296)
Q Consensus       267 e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~  296 (296)
                      ++.++|+++||+++++.... .....+.++|
T Consensus       273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~K  303 (305)
T 3ocj_A          273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARK  303 (305)
T ss_dssp             HHHHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence            99999999999999988653 3344555543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.75  E-value=1.6e-17  Score=141.74  Aligned_cols=144  Identities=13%  Similarity=0.128  Sum_probs=114.1

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~  197 (296)
                      +.++.+|||||||+|.++..+++.+|. +++++|+ +.+++.+++      ..++++++.+|+.+ +.+  .||+|++..
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  122 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG  122 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence            556789999999999999999999976 9999999 899988765      45779999999987 554  499999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF  277 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf  277 (296)
                      ++|+++   ...+|++++++|+|   ||++++.+..........   .   ....+..  .....++.++|.++++++||
T Consensus       123 ~l~~~~---~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~---~---~~~~~~~--~~~~~~~~~~~~~~l~~aGf  188 (257)
T 3f4k_A          123 AIYNIG---FERGMNEWSKYLKK---GGFIAVSEASWFTSERPA---E---IEDFWMD--AYPEISVIPTCIDKMERAGY  188 (257)
T ss_dssp             CSCCCC---HHHHHHHHHTTEEE---EEEEEEEEEEESSSCCCH---H---HHHHHHH--HCTTCCBHHHHHHHHHHTTE
T ss_pred             hHhhcC---HHHHHHHHHHHcCC---CcEEEEEEeeccCCCChH---H---HHHHHHH--hCCCCCCHHHHHHHHHHCCC
Confidence            999983   34789999999999   999999997755433221   1   1111111  11335689999999999999


Q ss_pred             ceeEEEEcC
Q 022515          278 SDYKIIPIL  286 (296)
Q Consensus       278 ~~~~~~~~~  286 (296)
                      +++.+...+
T Consensus       189 ~~v~~~~~~  197 (257)
T 3f4k_A          189 TPTAHFILP  197 (257)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEEECC
Confidence            999987765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.75  E-value=1.4e-17  Score=140.76  Aligned_cols=144  Identities=16%  Similarity=0.172  Sum_probs=111.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccceeEehhhhcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADAVLLKWILHD  201 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~  201 (296)
                      +.++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++  ...+++++.+|+.+ +.+  .||+|++.+++||
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  128 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW  128 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence            346789999999999999999998  679999999 999998876  46889999999998 554  4999999999999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                      +++..  .+|++++++|+|   ||++++.+........      . ..+............++.+++.++++++||++++
T Consensus       129 ~~~~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  196 (242)
T 3l8d_A          129 TEEPL--RALNEIKRVLKS---DGYACIAILGPTAKPR------E-NSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVD  196 (242)
T ss_dssp             SSCHH--HHHHHHHHHEEE---EEEEEEEEECTTCGGG------G-GGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred             ccCHH--HHHHHHHHHhCC---CeEEEEEEcCCcchhh------h-hhhhhhccccccccCCCHHHHHHHHHHcCCEEEE
Confidence            98764  789999999999   8998888753322111      0 1111111111234456999999999999999998


Q ss_pred             EEEc
Q 022515          282 IIPI  285 (296)
Q Consensus       282 ~~~~  285 (296)
                      ...+
T Consensus       197 ~~~~  200 (242)
T 3l8d_A          197 GIGV  200 (242)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            8754

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.75  E-value=8.2e-18  Score=147.21  Aligned_cols=163  Identities=13%  Similarity=0.153  Sum_probs=123.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCcc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~  190 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++      ..++++++.+|+.+-...|
T Consensus        62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  138 (302)
T 3hem_A           62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV  138 (302)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred             HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence            44555555  67788999999999999999999986 89999999 999988876      3458999999997652359


Q ss_pred             ceeEehhhhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchh-----hhhhhhhhhh-hhh
Q 022515          191 DAVLLKWILHDWND-------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSI-----ETQLFFDMLM-MVL  257 (296)
Q Consensus       191 D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~-----~~~~~~~~~~-~~~  257 (296)
                      |+|++..++|++++       +....+|++++++|+|   ||++++.+...+.........     ....+.++.. ...
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF  215 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence            99999999999955       4567899999999999   999999887765421100000     0000011111 122


Q ss_pred             cCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515          258 LTGTERDEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      .++...+.+++.++++++||+++.+...+
T Consensus       216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          216 PGGRLPRISQVDYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            45677899999999999999999887764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.75  E-value=7.8e-18  Score=142.41  Aligned_cols=153  Identities=18%  Similarity=0.342  Sum_probs=117.4

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--  188 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++..+  +++++|+ +.+++.+++     ...+++++.+|+.+ +++  
T Consensus        11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   86 (239)
T 1xxl_A           11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   86 (239)
T ss_dssp             HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence            34455555  67789999999999999999998864  8999999 899988775     33689999999987 554  


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh--hcCccccCHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV--LLTGTERDEK  266 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~rt~~  266 (296)
                      .||+|++..++|++++..  .+|++++++|+|   ||++++.+...+...      ....++......  ......++.+
T Consensus        87 ~fD~v~~~~~l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  155 (239)
T 1xxl_A           87 SFDIITCRYAAHHFSDVR--KAVREVARVLKQ---DGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSLS  155 (239)
T ss_dssp             CEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBHH
T ss_pred             cEEEEEECCchhhccCHH--HHHHHHHHHcCC---CcEEEEEEcCCCCCh------hHHHHHHHHHHhccccccCCCCHH
Confidence            499999999999998754  789999999999   999999987665421      111122211111  1224567999


Q ss_pred             HHHHHHHhcCCceeEEEEc
Q 022515          267 EWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       267 e~~~ll~~aGf~~~~~~~~  285 (296)
                      +|.++|+++||+++++...
T Consensus       156 ~~~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          156 EWQAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             HHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHCCCcEEEEEee
Confidence            9999999999998877654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.75  E-value=1.1e-17  Score=144.33  Aligned_cols=141  Identities=17%  Similarity=0.275  Sum_probs=111.7

Q ss_pred             CCCEEEEecCCc---hHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC------------C--C
Q 022515          130 GLNSLVDVGGGI---GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA------------I--S  188 (296)
Q Consensus       130 ~~~~vLDvGgG~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~------------~--p  188 (296)
                      +..+|||||||+   |.++..+.+.+|+.+++++|+ |.|++.|++   ..++++++.+|+.++            +  .
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            457999999999   999888888899999999999 999999876   357899999999762            1  2


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      .+|+|++..+||++++++...+|++++++|+|   ||++++.+...+.   . .  ......+.+.........++.+|+
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~s~~ei  227 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMTSLVDTG---L-P--AQQKLARITRENLGEGWARTPEEI  227 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEEEEBCSS---C-H--HHHHHHHHHHHHHSCCCCBCHHHH
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEEEecCcc---h-H--HHHHHHHHHHhcCCCCccCCHHHH
Confidence            58999999999999998788999999999999   9999999876532   1 0  111222222222234567899999


Q ss_pred             HHHHHhcCCceeE
Q 022515          269 TKLFTYAGFSDYK  281 (296)
Q Consensus       269 ~~ll~~aGf~~~~  281 (296)
                      .++|  +||++++
T Consensus       228 ~~~l--~G~~l~~  238 (274)
T 2qe6_A          228 ERQF--GDFELVE  238 (274)
T ss_dssp             HHTT--TTCEECT
T ss_pred             HHHh--CCCeEcc
Confidence            9999  5998765

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.75  E-value=3.7e-18  Score=140.54  Aligned_cols=139  Identities=14%  Similarity=0.085  Sum_probs=113.0

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchH
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEE  206 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~  206 (296)
                      +.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++...+++++.+|+.+ +.+  .||+|++.+++|+++.++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence            679999999999999999988  669999999 99999887645689999999988 544  499999999999999777


Q ss_pred             HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515          207 CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       207 ~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      ...+|++++++|+|   ||++++.+...+....   +   ..       .......++.++|.++++++||+++++...+
T Consensus       120 ~~~~l~~~~~~L~p---gG~l~i~~~~~~~~~~---~---~~-------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  183 (203)
T 3h2b_A          120 LPDALVALRMAVED---GGGLLMSFFSGPSLEP---M---YH-------PVATAYRWPLPELAQALETAGFQVTSSHWDP  183 (203)
T ss_dssp             HHHHHHHHHHTEEE---EEEEEEEEECCSSCEE---E---CC-------SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred             HHHHHHHHHHHcCC---CcEEEEEEccCCchhh---h---hc-------hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence            78999999999999   8998888754433110   0   00       0112345699999999999999999998775


Q ss_pred             C
Q 022515          287 G  287 (296)
Q Consensus       287 ~  287 (296)
                      .
T Consensus       184 ~  184 (203)
T 3h2b_A          184 R  184 (203)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.75  E-value=3.4e-17  Score=138.48  Aligned_cols=141  Identities=16%  Similarity=0.278  Sum_probs=110.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---CCC--ccceeEehhhhcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---AIS--PADAVLLKWILHD  201 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh~  201 (296)
                      +.++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++.   ++++.+|+.+   +++  .||+|++..++|+
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~  113 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSLPDKYLDGVMISHFVEH  113 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTSCTTCBSEEEEESCGGG
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh---cceeeccHHHHhhhcCCCCeeEEEECCchhh
Confidence            456789999999999999999998  568999999 8999988722   8999999876   444  4999999999999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                      +++++...+|++++++|+|   ||++++.......      .   ....... .........+.+++.++++++||++++
T Consensus       114 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~------~---~~~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~  180 (240)
T 3dli_A          114 LDPERLFELLSLCYSKMKY---SSYIVIESPNPTS------L---YSLINFY-IDPTHKKPVHPETLKFILEYLGFRDVK  180 (240)
T ss_dssp             SCGGGHHHHHHHHHHHBCT---TCCEEEEEECTTS------H---HHHHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred             CCcHHHHHHHHHHHHHcCC---CcEEEEEeCCcch------h---HHHHHHh-cCccccccCCHHHHHHHHHHCCCeEEE
Confidence            9988888999999999999   9999887653211      0   0111111 111234556899999999999999988


Q ss_pred             EEEcC
Q 022515          282 IIPIL  286 (296)
Q Consensus       282 ~~~~~  286 (296)
                      +....
T Consensus       181 ~~~~~  185 (240)
T 3dli_A          181 IEFFE  185 (240)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            87654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.74  E-value=1.5e-17  Score=142.83  Aligned_cols=144  Identities=12%  Similarity=0.093  Sum_probs=114.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~  197 (296)
                      +.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++      ..++++++.+|+.+ +.+  .||+|++..
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~  122 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG  122 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence            467789999999999999999998 7889999999 999988875      34789999999988 544  499999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF  277 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf  277 (296)
                      ++|++ +.  ..+|++++++|+|   ||++++.+..........   .   ....+.  .......+.+++.++++++||
T Consensus       123 ~~~~~-~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~---~~~~~~--~~~~~~~~~~~~~~~l~~aGf  188 (267)
T 3kkz_A          123 AIYNI-GF--ERGLNEWRKYLKK---GGYLAVSECSWFTDERPA---E---INDFWM--DAYPEIDTIPNQVAKIHKAGY  188 (267)
T ss_dssp             CGGGT-CH--HHHHHHHGGGEEE---EEEEEEEEEEESSSCCCH---H---HHHHHH--HHCTTCEEHHHHHHHHHHTTE
T ss_pred             Cceec-CH--HHHHHHHHHHcCC---CCEEEEEEeeecCCCChH---H---HHHHHH--HhCCCCCCHHHHHHHHHHCCC
Confidence            99999 33  4789999999999   999999998765443221   1   111111  111345589999999999999


Q ss_pred             ceeEEEEcC
Q 022515          278 SDYKIIPIL  286 (296)
Q Consensus       278 ~~~~~~~~~  286 (296)
                      +++++..++
T Consensus       189 ~~v~~~~~~  197 (267)
T 3kkz_A          189 LPVATFILP  197 (267)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            999988765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.74  E-value=7.6e-18  Score=141.95  Aligned_cols=133  Identities=16%  Similarity=0.174  Sum_probs=109.4

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhcc
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILHD  201 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~  201 (296)
                      ..+|||||||+|.++..+++  ++.+++++|+ +.+++.+++      ...+++++.+|+.+ +.+ .||+|++..++|+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            35999999999999998876  5779999999 899988876      23579999999998 333 5999999999999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                      +++++...+|++++++|+|   ||++++.+.........+                  ...++.++|.++|+++||++++
T Consensus       145 ~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~Gf~~~~  203 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKP---DGELITLMYPITDHVGGP------------------PYKVDVSTFEEVLVPIGFKAVS  203 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEE---EEEEEEEECCCSCCCSCS------------------SCCCCHHHHHHHHGGGTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCC---CcEEEEEEecccccCCCC------------------CccCCHHHHHHHHHHcCCeEEE
Confidence            9988888999999999999   999988876544322211                  1124899999999999999999


Q ss_pred             EEEcC
Q 022515          282 IIPIL  286 (296)
Q Consensus       282 ~~~~~  286 (296)
                      +...+
T Consensus       204 ~~~~~  208 (235)
T 3lcc_A          204 VEENP  208 (235)
T ss_dssp             EEECT
T ss_pred             EEecC
Confidence            88764

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.74  E-value=1.5e-17  Score=144.34  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=113.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vl  199 (296)
                      ..++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++..++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l   99 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL   99 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence            567789999999999999999999984 89999999 899988775    33489999999998 555 49999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee-----C---CCCCCCchhhhhhhhhhhhh--hhcCccccCHHHHH
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR-----E---NKKGDDKSIETQLFFDMLMM--VLLTGTERDEKEWT  269 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~-----~---~~~~~~~~~~~~~~~~~~~~--~~~~g~~rt~~e~~  269 (296)
                      |++++..  .+|++++++|+|   ||++++.+...     .   ++...++......+..+...  ...+....+..++.
T Consensus       100 ~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  174 (284)
T 3gu3_A          100 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP  174 (284)
T ss_dssp             GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHH
T ss_pred             hcCCCHH--HHHHHHHHHcCC---CCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHH
Confidence            9998875  889999999999   99999988651     1   11110000001112211111  11234455678899


Q ss_pred             HHHHhcCCceeEEEEc
Q 022515          270 KLFTYAGFSDYKIIPI  285 (296)
Q Consensus       270 ~ll~~aGf~~~~~~~~  285 (296)
                      ++|+++||+.+++...
T Consensus       175 ~~l~~aGF~~v~~~~~  190 (284)
T 3gu3_A          175 IYLSELGVKNIECRVS  190 (284)
T ss_dssp             HHHHHTTCEEEEEEEC
T ss_pred             HHHHHcCCCeEEEEEc
Confidence            9999999999877443

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.74  E-value=1.3e-17  Score=146.89  Aligned_cols=162  Identities=14%  Similarity=0.215  Sum_probs=121.7

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCcc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~  190 (296)
                      ..+++.++  ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++      ..++++++.+|+.+....|
T Consensus        80 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f  156 (318)
T 2fk8_A           80 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV  156 (318)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred             HHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCc
Confidence            44555555  6677899999999999999999987 569999999 999988875      2367999999987632469


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCC----Cchh-hhhhhhhhhh-hhhcCccccC
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD----DKSI-ETQLFFDMLM-MVLLTGTERD  264 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~----~~~~-~~~~~~~~~~-~~~~~g~~rt  264 (296)
                      |+|++..++|++++++...+|+++.++|+|   ||++++.+...+.....    .+.. ......+... ....++...+
T Consensus       157 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  233 (318)
T 2fk8_A          157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS  233 (318)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred             CEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence            999999999999877778999999999999   99999988876542110    0000 0000111111 1123566779


Q ss_pred             HHHHHHHHHhcCCceeEEEEc
Q 022515          265 EKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .+++.++++++||+++++...
T Consensus       234 ~~~~~~~l~~aGf~~~~~~~~  254 (318)
T 2fk8_A          234 TEMMVEHGEKAGFTVPEPLSL  254 (318)
T ss_dssp             HHHHHHHHHHTTCBCCCCEEC
T ss_pred             HHHHHHHHHhCCCEEEEEEec
Confidence            999999999999999887664

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.73  E-value=5.7e-18  Score=135.48  Aligned_cols=142  Identities=20%  Similarity=0.268  Sum_probs=113.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEehhhhccCCch
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLKWILHDWNDE  205 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~  205 (296)
                      ..+..+|||||||+|.++..+++...  +++++|+ +.+++.+++..+++++..+| .. +...||+|++..++|++++.
T Consensus        15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~~~   91 (170)
T 3i9f_A           15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFANSFHDMDDK   91 (170)
T ss_dssp             SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEESCSTTCSCH
T ss_pred             cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEccchhcccCH
Confidence            56778999999999999999999873  9999999 89998887546789999999 32 22359999999999999865


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          206 ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       206 ~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .  .++++++++|+|   ||++++.+.........++                ....++.++|.++++  ||+++++...
T Consensus        92 ~--~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~--Gf~~~~~~~~  148 (170)
T 3i9f_A           92 Q--HVISEVKRILKD---DGRVIIIDWRKENTGIGPP----------------LSIRMDEKDYMGWFS--NFVVEKRFNP  148 (170)
T ss_dssp             H--HHHHHHHHHEEE---EEEEEEEEECSSCCSSSSC----------------GGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred             H--HHHHHHHHhcCC---CCEEEEEEcCccccccCch----------------HhhhcCHHHHHHHHh--CcEEEEccCC
Confidence            4  889999999999   9999999876554332211                012248999999999  9999999988


Q ss_pred             CCcceEEEEe
Q 022515          286 LGLRSLIEVY  295 (296)
Q Consensus       286 ~~~~~vi~~~  295 (296)
                      ......+.++
T Consensus       149 ~~~~~~l~~~  158 (170)
T 3i9f_A          149 TPYHFGLVLK  158 (170)
T ss_dssp             STTEEEEEEE
T ss_pred             CCceEEEEEe
Confidence            7665555543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.73  E-value=1.8e-17  Score=144.73  Aligned_cols=170  Identities=12%  Similarity=0.174  Sum_probs=117.6

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CC----CCeeEEeccCCC-CC
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DL----ANLKYVGGDMFE-AI  187 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~----~ri~~~~~D~~~-~~  187 (296)
                      ..+++.++   ....+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ..    .+++++.+|+.+ +.
T Consensus        73 ~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~  147 (299)
T 3g2m_A           73 REFATRTG---PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL  147 (299)
T ss_dssp             HHHHHHHC---CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC
T ss_pred             HHHHHhhC---CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc
Confidence            34444443   23459999999999999999987  678999999 999998876    22    789999999998 55


Q ss_pred             C-ccceeEe-hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc-----hh-hhhhhhhhh------
Q 022515          188 S-PADAVLL-KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK-----SI-ETQLFFDML------  253 (296)
Q Consensus       188 p-~~D~v~~-~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~-----~~-~~~~~~~~~------  253 (296)
                      + .||+|++ ..++|++++++...+|++++++|+|   ||++++.....+.......     +. .....+.+.      
T Consensus       148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  224 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA  224 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred             CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence            5 4998885 5778888877788999999999999   8888887654432110000     00 000000000      


Q ss_pred             -------hhh-----------hcCccccCHHHHHHHHHhcCCceeEEEEcCCc------ceEEEEe
Q 022515          254 -------MMV-----------LLTGTERDEKEWTKLFTYAGFSDYKIIPILGL------RSLIEVY  295 (296)
Q Consensus       254 -------~~~-----------~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~------~~vi~~~  295 (296)
                             +..           ...-+.++.++|.++|+++||+++++.++...      ..++++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~  290 (299)
T 3g2m_A          225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV  290 (299)
T ss_dssp             EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred             ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence                   000           00112459999999999999999999887522      3566664

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.73  E-value=1.2e-17  Score=141.39  Aligned_cols=140  Identities=18%  Similarity=0.302  Sum_probs=113.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C----CCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D----LANLKYVGGDMFE-AIS--PADAVLLKWILH  200 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~----~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh  200 (296)
                      +..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ .    ..+++++.+|+.+ +.+  .||+|++.+++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            57899999999999999998886 569999999 999988876 2    3469999999877 443  499999999999


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                      ++++++...+|++++++|+|   ||++++.+.....   ..       .++.    ..+...++.++|.++++++||+++
T Consensus       158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~---~~-------~~~~----~~~~~~~~~~~~~~~l~~aGf~~~  220 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQE---GV-------ILDD----VDSSVCRDLDVVRRIICSAGLSLL  220 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSS---SE-------EEET----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             hCCHHHHHHHHHHHHHhcCC---CeEEEEEEccCCC---cc-------eecc----cCCcccCCHHHHHHHHHHcCCeEE
Confidence            99998888999999999999   9999999877654   10       0100    112334589999999999999999


Q ss_pred             EEEEcCC
Q 022515          281 KIIPILG  287 (296)
Q Consensus       281 ~~~~~~~  287 (296)
                      ++....+
T Consensus       221 ~~~~~~~  227 (241)
T 2ex4_A          221 AEERQEN  227 (241)
T ss_dssp             EEEECCS
T ss_pred             EeeecCC
Confidence            9887643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.73  E-value=2.2e-17  Score=136.24  Aligned_cols=136  Identities=7%  Similarity=-0.025  Sum_probs=106.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--C---------------CCCeeEEeccCCC-CCC
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--D---------------LANLKYVGGDMFE-AIS  188 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~---------------~~ri~~~~~D~~~-~~p  188 (296)
                      ..++.+|||+|||+|..+..|+++  +.+++++|+ +.+++.|++  .               ..+++++.+|+++ +.+
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            456789999999999999999998  679999999 999998875  1               3689999999998 542


Q ss_pred             ---ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCH
Q 022515          189 ---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDE  265 (296)
Q Consensus       189 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~  265 (296)
                         .||+|++..++|++++++..+++++++++|+|   ||+++++....+.....                 ......+.
T Consensus        98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~~~~~~~~~~~-----------------~~~~~~~~  157 (203)
T 1pjz_A           98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQALLE-----------------GPPFSVPQ  157 (203)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCSSSSS-----------------SCCCCCCH
T ss_pred             cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEEEEecCccccC-----------------CCCCCCCH
Confidence               59999999999999987777899999999999   99855554433211000                 00112488


Q ss_pred             HHHHHHHHhcCCceeEEEEcC
Q 022515          266 KEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       266 ~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      +++.+++++ ||++..+....
T Consensus       158 ~el~~~~~~-gf~i~~~~~~~  177 (203)
T 1pjz_A          158 TWLHRVMSG-NWEVTKVGGQD  177 (203)
T ss_dssp             HHHHHTSCS-SEEEEEEEESS
T ss_pred             HHHHHHhcC-CcEEEEecccc
Confidence            999999999 99988776653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.72  E-value=2.7e-17  Score=140.07  Aligned_cols=159  Identities=17%  Similarity=0.128  Sum_probs=111.9

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccce
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADA  192 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~  192 (296)
                      .+.+.++  ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++  ...+++++.+|+.+ +.+  .||+
T Consensus        35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            3444444  446789999999999999999998654 9999999 999998876  45789999999987 554  4999


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC----------CCCCch-hhhhhhhhh-----hhhh
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK----------KGDDKS-IETQLFFDM-----LMMV  256 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~----------~~~~~~-~~~~~~~~~-----~~~~  256 (296)
                      |++..++|++++.  ..+|++++++|+|   ||++++........          ...... ......++.     ....
T Consensus       112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (253)
T 3g5l_A          112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLG  186 (253)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETT
T ss_pred             EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecc
Confidence            9999999999765  4889999999999   89988864321100          000000 000000000     0000


Q ss_pred             -hcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          257 -LLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       257 -~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                       ......+|.++|.++|+++||+++++...
T Consensus       187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~  216 (253)
T 3g5l_A          187 EDVQKYHRTVTTYIQTLLKNGFQINSVIEP  216 (253)
T ss_dssp             EEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred             ccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence             01112349999999999999999998754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.71  E-value=8.2e-17  Score=145.52  Aligned_cols=145  Identities=14%  Similarity=0.231  Sum_probs=113.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCCC---------C----CCeeEEeccCCC-------C
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDSD---------L----ANLKYVGGDMFE-------A  186 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~----~ri~~~~~D~~~-------~  186 (296)
                      .++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++.         .    .+++|+.+|+.+       +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            467899999999999999999987 7889999999 9999888751         2    699999999987       3


Q ss_pred             CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515          187 IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD  264 (296)
Q Consensus       187 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt  264 (296)
                      ++  .||+|++..++|++++..  .+|++++++|+|   ||++++.+.........    ..  ...........+..++
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~  230 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNKL--ALFKEIHRVLRD---GGELYFSDVYADRRLSE----AA--QQDPILYGECLGGALY  230 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEESSCCCH----HH--HHCHHHHHTTCTTCCB
T ss_pred             CCCCCEEEEEEccchhcCCCHH--HHHHHHHHHcCC---CCEEEEEEeccccccCH----hH--hhhHHHhhcccccCCC
Confidence            33  499999999999998754  889999999999   99999988776543221    10  1111111222345668


Q ss_pred             HHHHHHHHHhcCCceeEEEE
Q 022515          265 EKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~  284 (296)
                      .++|.++|+++||+++++..
T Consensus       231 ~~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          231 LEDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHHHHHCCCceEEEEe
Confidence            89999999999999876654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.71  E-value=8.8e-17  Score=134.91  Aligned_cols=149  Identities=13%  Similarity=0.150  Sum_probs=110.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCC-CCC--cccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFE-AIS--PADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~-~~p--~~D~v  193 (296)
                      +++..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++          ..+++++..+|+.+ +.+  .||+|
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            346789999999999999999998  679999999 888887765          12478999999988 544  49999


Q ss_pred             EehhhhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc--------------
Q 022515          194 LLKWILHDWNDEE-CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL--------------  258 (296)
Q Consensus       194 ~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  258 (296)
                      ++..++|++++.. ...+|++++++|+|   ||++++.+........   .........+......              
T Consensus       106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (235)
T 3sm3_A          106 VMQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLVEFGQNWHLK---LYRKRYLHDFPITKEEGSFLARDPETGETE  179 (235)
T ss_dssp             EEESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEEEEBCCTTSH---HHHHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred             EEcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEEECCcchhHH---HHHHHhhhhccchhhhcceEecccccCCcc
Confidence            9999999998654 56899999999999   9999998875532211   1010001111000000              


Q ss_pred             -CccccCHHHHHHHHHhcCCceeEEEE
Q 022515          259 -TGTERDEKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       259 -~g~~rt~~e~~~ll~~aGf~~~~~~~  284 (296)
                       ....++.++|.++++++||+++++..
T Consensus       180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~  206 (235)
T 3sm3_A          180 FIAHHFTEKELVFLLTDCRFEIDYFRV  206 (235)
T ss_dssp             EEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             eeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence             11356999999999999999988764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.71  E-value=5.3e-17  Score=137.35  Aligned_cols=145  Identities=13%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCCCCC--ccceeEehhhhccCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFEAIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~~~d  204 (296)
                      .++.+|||||||+|.++..+++..+  +++++|+ +.+++.|++ ...+++++.+|+.+..+  .||+|++.+++||+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence            3567899999999999999998865  7999999 899998876 33389999999987422  4999999999999987


Q ss_pred             hHHHHHHHHHH-HhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh---------hhhhhcCccccCHHHHHHHHHh
Q 022515          205 EECVKILKKCK-EAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM---------LMMVLLTGTERDEKEWTKLFTY  274 (296)
Q Consensus       205 ~~~~~iL~~~~-~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~rt~~e~~~ll~~  274 (296)
                      ..  .+|++++ ++|+|   ||++++.+......     ..........         ..........++.+++.+++++
T Consensus       119 ~~--~~l~~~~~~~Lkp---gG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (250)
T 2p7i_A          119 PV--ALLKRINDDWLAE---GGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR  188 (250)
T ss_dssp             HH--HHHHHHHHTTEEE---EEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHhcCC---CCEEEEEcCChHHH-----HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHH
Confidence            64  8899999 99999   99999877532210     0000000000         0001122356799999999999


Q ss_pred             cCCceeEEEEc
Q 022515          275 AGFSDYKIIPI  285 (296)
Q Consensus       275 aGf~~~~~~~~  285 (296)
                      +||+++++...
T Consensus       189 ~Gf~~~~~~~~  199 (250)
T 2p7i_A          189 AGLQVTYRSGI  199 (250)
T ss_dssp             TTCEEEEEEEE
T ss_pred             CCCeEEEEeee
Confidence            99999887653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.71  E-value=6.3e-17  Score=134.77  Aligned_cols=145  Identities=14%  Similarity=0.066  Sum_probs=105.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC----CCeeEEeccCCC-CCC--cccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL----ANLKYVGGDMFE-AIS--PADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~----~ri~~~~~D~~~-~~p--~~D~v  193 (296)
                      ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++      ..    .+++++.+|+.. +.+  .||+|
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  106 (219)
T 3jwg_A           27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA  106 (219)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred             hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence            35678999999999999999999988899999999 999988875      11    289999999976 432  59999


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH----
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT----  269 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~----  269 (296)
                      ++..++|++++++..++|++++++|+|   ||.+++...........    .   .....+........++.+++.    
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~l~~~~~  176 (219)
T 3jwg_A          107 TVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVSTPNKEYNFHYG----N---LFEGNLRHRDHRFEWTRKEFQTWAV  176 (219)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBGGGGGCCC----C---T-----GGGCCTTSBCHHHHHHHHH
T ss_pred             EEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEccchhhhhhhc----c---cCcccccccCceeeecHHHHHHHHH
Confidence            999999999988888999999999999   88554443321111000    0   000000001122345888888    


Q ss_pred             HHHHhcCCceeEE
Q 022515          270 KLFTYAGFSDYKI  282 (296)
Q Consensus       270 ~ll~~aGf~~~~~  282 (296)
                      ++++++||++...
T Consensus       177 ~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          177 KVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHHTEEEEEE
T ss_pred             HHHHHCCcEEEEE
Confidence            8889999976443

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.71  E-value=2.9e-16  Score=132.51  Aligned_cols=159  Identities=12%  Similarity=0.092  Sum_probs=111.2

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC--ccce
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS--PADA  192 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p--~~D~  192 (296)
                      .+...++  ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++  ...+++++.+|+.+ +.+  .||+
T Consensus        34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  110 (243)
T 3bkw_A           34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL  110 (243)
T ss_dssp             HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence            4444454  4567899999999999999999873 238999999 899988876  34579999999987 544  4999


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc-hh---------hhhhhhh-----hhhhh-
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK-SI---------ETQLFFD-----MLMMV-  256 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~-~~---------~~~~~~~-----~~~~~-  256 (296)
                      |++..++|++++.  ..+|++++++|+|   ||++++............+ +.         .....+.     ...+. 
T Consensus       111 v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (243)
T 3bkw_A          111 AYSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK  185 (243)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred             EEEeccccccchH--HHHHHHHHHhcCc---CcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence            9999999999864  4889999999999   8998887642110000000 00         0000000     00000 


Q ss_pred             hcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          257 LLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      ......+|.++|.++|+++||+++++...
T Consensus       186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          186 GVVKHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             SCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             ceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence            11123358999999999999999988764

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.71  E-value=5.6e-17  Score=140.22  Aligned_cols=156  Identities=17%  Similarity=0.172  Sum_probs=114.5

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccce
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADA  192 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~  192 (296)
                      ....+++.+.  ..++.+|||||||+|.++..+++  ++.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+
T Consensus        45 ~~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~  120 (279)
T 3ccf_A           45 YGEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDA  120 (279)
T ss_dssp             SCCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEE
T ss_pred             HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCE
Confidence            3445555555  56778999999999999999998  7889999999 99999887634789999999988 554 4999


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-------hcCccccCH
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-------LLTGTERDE  265 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~rt~  265 (296)
                      |++..++|++++..  .+|++++++|+|   ||++++.......   ...  ....+.......       ......++.
T Consensus       121 v~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (279)
T 3ccf_A          121 VFSNAMLHWVKEPE--AAIASIHQALKS---GGRFVAEFGGKGN---IKY--ILEALYNALETLGIHNPQALNPWYFPSI  190 (279)
T ss_dssp             EEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECTTT---THH--HHHHHHHHHHHHTCCCGGGGCCCCCCCH
T ss_pred             EEEcchhhhCcCHH--HHHHHHHHhcCC---CcEEEEEecCCcc---hHH--HHHHHHHHHHhcCCccccCcCceeCCCH
Confidence            99999999998765  789999999999   8988886543211   000  011111110000       001134589


Q ss_pred             HHHHHHHHhcCCceeEEEEc
Q 022515          266 KEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       266 ~e~~~ll~~aGf~~~~~~~~  285 (296)
                      ++|.++|+++||+++++...
T Consensus       191 ~~~~~~l~~aGf~~~~~~~~  210 (279)
T 3ccf_A          191 GEYVNILEKQGFDVTYAALF  210 (279)
T ss_dssp             HHHHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHHcCCEEEEEEEe
Confidence            99999999999998876644

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.71  E-value=1.7e-16  Score=135.97  Aligned_cols=151  Identities=14%  Similarity=0.165  Sum_probs=112.7

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--cccee
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAV  193 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v  193 (296)
                      ..+++.++  ..++.+|||||||+|.++..+++  |+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+  .||+|
T Consensus        24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVV-HPQVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCC-CTTEEEECCCTTSCCSCTTCBSEE
T ss_pred             HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHh-ccCCEEEECchhhCCCCCCCEeEE
Confidence            44455554  56778999999999999999987  6889999999 999999884 3399999999988 654  49999


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT  273 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~  273 (296)
                      ++.+++|++++..  .+|++++++|+    ||++++.+...+.....  +  ....+.. .....+....+.+++. +|+
T Consensus        99 ~~~~~l~~~~~~~--~~l~~~~~~Lk----gG~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~~~~~~~~~-~l~  166 (261)
T 3ege_A           99 ISILAIHHFSHLE--KSFQEMQRIIR----DGTIVLLTFDIRLAQRI--W--LYDYFPF-LWEDALRFLPLDEQIN-LLQ  166 (261)
T ss_dssp             EEESCGGGCSSHH--HHHHHHHHHBC----SSCEEEEEECGGGCCCC--G--GGGTCHH-HHHHHHTSCCHHHHHH-HHH
T ss_pred             EEcchHhhccCHH--HHHHHHHHHhC----CcEEEEEEcCCchhHHH--H--HHHHHHH-HhhhhhhhCCCHHHHH-HHH
Confidence            9999999997754  88999999998    59999998754332211  0  0000000 0011123345778899 999


Q ss_pred             hcCCceeEEEEc
Q 022515          274 YAGFSDYKIIPI  285 (296)
Q Consensus       274 ~aGf~~~~~~~~  285 (296)
                      ++||+++++...
T Consensus       167 ~aGF~~v~~~~~  178 (261)
T 3ege_A          167 ENTKRRVEAIPF  178 (261)
T ss_dssp             HHHCSEEEEEEC
T ss_pred             HcCCCceeEEEe
Confidence            999999888765

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.70  E-value=5.9e-17  Score=134.82  Aligned_cols=144  Identities=13%  Similarity=0.005  Sum_probs=104.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC----CCeeEEeccCCC-CCC--cccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL----ANLKYVGGDMFE-AIS--PADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~----~ri~~~~~D~~~-~~p--~~D~v  193 (296)
                      ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++      ..    .+++++.+|+.. +.+  .||+|
T Consensus        27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            45678999999999999999999988899999999 999988875      11    289999999876 433  59999


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH----
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT----  269 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~----  269 (296)
                      ++..++|++++++..++|++++++|+|   ||.+++........       .........+........++.+++.    
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  176 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTTPNIEYNV-------KFANLPAGKLRHKDHRFEWTRSQFQNWAN  176 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEEEBHHHHH-------HTC-----------CCSCBCHHHHHHHHH
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEccCcccch-------hhcccccccccccccccccCHHHHHHHHH
Confidence            999999999988888999999999999   88655554311000       0000000000001122345888888    


Q ss_pred             HHHHhcCCceeE
Q 022515          270 KLFTYAGFSDYK  281 (296)
Q Consensus       270 ~ll~~aGf~~~~  281 (296)
                      ++++++||++..
T Consensus       177 ~~~~~~Gf~v~~  188 (217)
T 3jwh_A          177 KITERFAYNVQF  188 (217)
T ss_dssp             HHHHHSSEEEEE
T ss_pred             HHHHHcCceEEE
Confidence            889999998643

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.70  E-value=3.7e-17  Score=135.40  Aligned_cols=138  Identities=16%  Similarity=0.100  Sum_probs=108.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeEehhhhccCCc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVLLKWILHDWND  204 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~d  204 (296)
                      +.++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ..++++..+|+.+ +.+ .||+|++..++|++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  117 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASR-RLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR  117 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-HHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHH-hcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence            456789999999999999999987  679999999 899988874 2267888999887 433 4999999999999998


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC-CceeEEE
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG-FSDYKII  283 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG-f~~~~~~  283 (296)
                      ++...+|++++++|+|   ||++++...........        ...      .....++.++|.++++++| |+++++.
T Consensus       118 ~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~--------~~~------~~~~~~~~~~~~~~l~~aG~f~~~~~~  180 (211)
T 3e23_A          118 DELADVLKLIWRALKP---GGLFYASYKSGEGEGRD--------KLA------RYYNYPSEEWLRARYAEAGTWASVAVE  180 (211)
T ss_dssp             HHHHHHHHHHHHHEEE---EEEEEEEEECCSSCEEC--------TTS------CEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred             HHHHHHHHHHHHhcCC---CcEEEEEEcCCCccccc--------ccc------hhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence            8888999999999999   89888875433221100        000      0113459999999999999 9999887


Q ss_pred             Ec
Q 022515          284 PI  285 (296)
Q Consensus       284 ~~  285 (296)
                      ..
T Consensus       181 ~~  182 (211)
T 3e23_A          181 SS  182 (211)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.70  E-value=3.9e-17  Score=141.63  Aligned_cols=148  Identities=17%  Similarity=0.160  Sum_probs=110.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C-CC--ccceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A-IS--PADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~-~p--~~D~v~~~~v  198 (296)
                      ++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++      ..++++++.+|+.+ + .+  .||+|++..+
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            3579999999999999999988  679999999 999988875      23789999999988 3 33  4999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh--------hcCccccCHHHHHH
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV--------LLTGTERDEKEWTK  270 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~rt~~e~~~  270 (296)
                      +|++++..  .+|++++++|+|   ||++++.+.........   ......+......        ......++.+++.+
T Consensus       146 l~~~~~~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  217 (285)
T 4htf_A          146 LEWVADPR--SVLQTLWSVLRP---GGVLSLMFYNAHGLLMH---NMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYL  217 (285)
T ss_dssp             GGGCSCHH--HHHHHHHHTEEE---EEEEEEEEEBHHHHHHH---HHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHH
T ss_pred             hhcccCHH--HHHHHHHHHcCC---CeEEEEEEeCCchHHHH---HHHhcCHHHHhhhccccccccCCCCCCCCHHHHHH
Confidence            99998764  789999999999   89988887643221000   0000000000000        01124568999999


Q ss_pred             HHHhcCCceeEEEEcCC
Q 022515          271 LFTYAGFSDYKIIPILG  287 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~~  287 (296)
                      +++++||+++++..+..
T Consensus       218 ~l~~aGf~v~~~~~~~~  234 (285)
T 4htf_A          218 WLEEAGWQIMGKTGVRV  234 (285)
T ss_dssp             HHHHTTCEEEEEEEESS
T ss_pred             HHHHCCCceeeeeeEEE
Confidence            99999999998887643

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=1.4e-16  Score=135.95  Aligned_cols=151  Identities=12%  Similarity=0.081  Sum_probs=111.2

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC-ccceeE
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS-PADAVL  194 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p-~~D~v~  194 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...+++++.+|+.+ +.+ .||+|+
T Consensus        23 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  100 (259)
T 2p35_A           23 RDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY  100 (259)
T ss_dssp             HHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence            34555555  56778999999999999999999999999999999 99999887545689999999988 422 499999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhh-hhhhhhhhhhh-------hcCccccCHH
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIE-TQLFFDMLMMV-------LLTGTERDEK  266 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~g~~rt~~  266 (296)
                      +..++|++++.  ..+|++++++|+|   ||++++.......   . +... .........+.       .......+.+
T Consensus       101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T 2p35_A          101 ANAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQMPDNLQ---E-PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPS  171 (259)
T ss_dssp             EESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEEEECCTT---S-HHHHHHHHHHHHSTTGGGC-------CCCCCHH
T ss_pred             EeCchhhCCCH--HHHHHHHHHhcCC---CeEEEEEeCCCCC---c-HHHHHHHHHhcCcchHHHhccccccccCCCCHH
Confidence            99999999765  4789999999999   8999888753211   1 1100 00010000000       0123456899


Q ss_pred             HHHHHHHhcCCce
Q 022515          267 EWTKLFTYAGFSD  279 (296)
Q Consensus       267 e~~~ll~~aGf~~  279 (296)
                      +|.++|+++||++
T Consensus       172 ~~~~~l~~aGf~v  184 (259)
T 2p35_A          172 DYFNALSPKSSRV  184 (259)
T ss_dssp             HHHHHHGGGEEEE
T ss_pred             HHHHHHHhcCCce
Confidence            9999999999974

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.69  E-value=3e-16  Score=128.33  Aligned_cols=142  Identities=13%  Similarity=0.147  Sum_probs=111.5

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-cc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-PA  190 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-~~  190 (296)
                      .+++.++  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++     ...++++..+|+.+ +.+ .|
T Consensus        23 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~   98 (199)
T 2xvm_A           23 EVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY   98 (199)
T ss_dssp             HHHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred             HHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence            4445555  445679999999999999999987  679999999 899988875     23479999999987 444 59


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++..++|++++++...+|++++++|+|   ||++++++....+....+               ......++.+++++
T Consensus        99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~  160 (199)
T 2xvm_A           99 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRR  160 (199)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHH
T ss_pred             eEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHH
Confidence            999999999999987788999999999999   999998887654432210               01122348889999


Q ss_pred             HHHhcCCceeEEEE
Q 022515          271 LFTYAGFSDYKIIP  284 (296)
Q Consensus       271 ll~~aGf~~~~~~~  284 (296)
                      ++++  |++++...
T Consensus       161 ~~~~--f~~~~~~~  172 (199)
T 2xvm_A          161 YYEG--WERVKYNE  172 (199)
T ss_dssp             HTTT--SEEEEEEC
T ss_pred             HhcC--CeEEEecc
Confidence            9987  98887654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.69  E-value=1.7e-17  Score=144.65  Aligned_cols=147  Identities=14%  Similarity=0.208  Sum_probs=105.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C--C----------------------------
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D--L----------------------------  173 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~----------------------------  173 (296)
                      ..+.+|||||||+|.++..+++.+|..+++++|+ +.+++.|++    .  .                            
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            4678999999999999999999999999999999 899988765    1  1                            


Q ss_pred             -----------------------------CCeeEEeccCCCCC--------CccceeEehhhhccC----CchHHHHHHH
Q 022515          174 -----------------------------ANLKYVGGDMFEAI--------SPADAVLLKWILHDW----NDEECVKILK  212 (296)
Q Consensus       174 -----------------------------~ri~~~~~D~~~~~--------p~~D~v~~~~vlh~~----~d~~~~~iL~  212 (296)
                                                   .+|+|+.+|+....        +.||+|++..++|++    +++...++|+
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~  204 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR  204 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence                                         58999999998622        259999999999665    6777889999


Q ss_pred             HHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh--cCCceeEEEEc
Q 022515          213 KCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY--AGFSDYKIIPI  285 (296)
Q Consensus       213 ~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~--aGf~~~~~~~~  285 (296)
                      +++++|+|   ||++++....+....      ....... ............++++.++|.+  +||+.+++...
T Consensus       205 ~~~~~Lkp---GG~lil~~~~~~~y~------~~~~~~~-~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          205 RIYRHLRP---GGILVLEPQPWSSYG------KRKTLTE-TIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHHEEE---EEEEEEECCCHHHHH------TTTTSCH-HHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHHhCC---CcEEEEecCCchhhh------hhhcccH-HHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            99999999   887776432211000      0000000 0000111223357899999999  99998887654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.69  E-value=1.9e-16  Score=133.77  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=82.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehh-hhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKW-ILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~-vlh~  201 (296)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++.. ++|+
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence            5689999999999999999988  568999999 999988876    23389999999987 554 599999998 9999


Q ss_pred             CCc-hHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          202 WND-EECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       202 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +++ ++...+|++++++|+|   ||++++.
T Consensus       115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~  141 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKE---GGVFIFD  141 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence            954 5677999999999999   8887763

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.68  E-value=3e-16  Score=135.13  Aligned_cols=159  Identities=11%  Similarity=0.063  Sum_probs=113.6

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hh------HhhccCC------CCCCeeEEecc-C
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PH------VVNGLDS------DLANLKYVGGD-M  183 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~------~~~ri~~~~~D-~  183 (296)
                      .+++.++  ..++.+|||||||+|.++..+++.+ |+.+++++|+ +.      +++.+++      ..++++++.+| +
T Consensus        34 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  111 (275)
T 3bkx_A           34 AIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            4455555  6678899999999999999999996 7789999999 65      7777765      23689999998 5


Q ss_pred             CC---CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh-hhhhhhhhhhh
Q 022515          184 FE---AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET-QLFFDMLMMVL  257 (296)
Q Consensus       184 ~~---~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~~~~~~~~  257 (296)
                      ..   +++  .||+|++..++|++++..  .+++.+++.++|   ||++++.+...+...... .... .......+...
T Consensus       112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  185 (275)
T 3bkx_A          112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAI  185 (275)
T ss_dssp             TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHH
T ss_pred             hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhc
Confidence            43   233  499999999999999875  467777777777   999999998765542210 0000 00110000000


Q ss_pred             ----cC--ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          258 ----LT--GTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       258 ----~~--g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                          ..  ...++.+++.++++++||+++++...
T Consensus       186 ~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          186 APSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             SCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             cccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence                11  13569999999999999999887765

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.67  E-value=2.8e-16  Score=133.08  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=110.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC-------ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS-------PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p-------~~D~v~~~  196 (296)
                      ..+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++  ...+++++.+|+.+ +.+       .||+|++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            45678999999999999999999987  8999999 899998876  45689999999998 322       28999999


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhh-------hhhhhhhhhhcCccccCHHHHH
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ-------LFFDMLMMVLLTGTERDEKEWT  269 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~rt~~e~~  269 (296)
                      .++|++++++...+|++++++|+|   ||++++.+...++...   .....       ......+........++.+++.
T Consensus       132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (245)
T 3ggd_A          132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLIELGTGCIDF---FNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIE  205 (245)
T ss_dssp             SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEEEECTTHHHH---HHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHH
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCccccHH---HHHHHhCCCCCchhhhhccccCCCCCccCHHHHH
Confidence            999999988888999999999999   9999999975432100   00000       0000000000111235899999


Q ss_pred             HHHHhcCCceeEEEEc
Q 022515          270 KLFTYAGFSDYKIIPI  285 (296)
Q Consensus       270 ~ll~~aGf~~~~~~~~  285 (296)
                      +++  +||+++....+
T Consensus       206 ~~~--aGf~~~~~~~~  219 (245)
T 3ggd_A          206 LYF--PDFEILSQGEG  219 (245)
T ss_dssp             HHC--TTEEEEEEECC
T ss_pred             HHh--CCCEEEecccc
Confidence            999  99998876443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.67  E-value=4.1e-16  Score=131.62  Aligned_cols=95  Identities=23%  Similarity=0.351  Sum_probs=80.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehh-hhc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKW-ILH  200 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~-vlh  200 (296)
                      .+..+|||||||+|.++..+++.   .+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++.. ++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            45689999999999999998877   69999999 999998876    34689999999987 544 599999986 999


Q ss_pred             cC-CchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          201 DW-NDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       201 ~~-~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ++ +.++...+|++++++|+|   ||++++
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~p---gG~l~~  135 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTD---GGKLLF  135 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCC---CeEEEE
Confidence            88 455677899999999999   888776

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.66  E-value=1.9e-15  Score=122.89  Aligned_cols=126  Identities=16%  Similarity=0.177  Sum_probs=105.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEeh-hhhccCC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLK-WILHDWN  203 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~-~vlh~~~  203 (296)
                      .+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++...+++++.+|+.+ +.+  .||+|++. .++|+++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~  122 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA  122 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence            46789999999999999999987  679999999 89998887644579999999988 554  49999998 8999998


Q ss_pred             chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515          204 DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII  283 (296)
Q Consensus       204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  283 (296)
                      +++...+|+++.+.|+|   ||++++.....                          ..++.+++.++++++||+++++.
T Consensus       123 ~~~~~~~l~~~~~~l~~---~G~l~~~~~~~--------------------------~~~~~~~~~~~l~~~Gf~~~~~~  173 (195)
T 3cgg_A          123 EDGREPALANIHRALGA---DGRAVIGFGAG--------------------------RGWVFGDFLEVAERVGLELENAF  173 (195)
T ss_dssp             HHHHHHHHHHHHHHEEE---EEEEEEEEETT--------------------------SSCCHHHHHHHHHHHTEEEEEEE
T ss_pred             hHHHHHHHHHHHHHhCC---CCEEEEEeCCC--------------------------CCcCHHHHHHHHHHcCCEEeeee
Confidence            88788999999999999   88888754211                          11378899999999999998876


Q ss_pred             Ec
Q 022515          284 PI  285 (296)
Q Consensus       284 ~~  285 (296)
                      ..
T Consensus       174 ~~  175 (195)
T 3cgg_A          174 ES  175 (195)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.66  E-value=2.1e-16  Score=131.82  Aligned_cols=152  Identities=13%  Similarity=0.135  Sum_probs=108.7

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-----C-Cc-c
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-----I-SP-A  190 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-----~-p~-~  190 (296)
                      .++..+.  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ..++++..+|+.+.     . .. |
T Consensus        43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~f  117 (227)
T 3e8s_A           43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARA-AGAGEVHLASYAQLAEAKVPVGKDY  117 (227)
T ss_dssp             HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHH-TCSSCEEECCHHHHHTTCSCCCCCE
T ss_pred             HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHH-hcccccchhhHHhhcccccccCCCc
Confidence            4455444  456689999999999999999888  679999999 899998884 47788888877651     1 23 9


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh------cCccccC
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL------LTGTERD  264 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~rt  264 (296)
                      |+|++.+++| .++.  ..+|++++++|+|   ||++++.+.......... +  ...+........      .....++
T Consensus       118 D~v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~  188 (227)
T 3e8s_A          118 DLICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQTLHPWSVADGD-Y--QDGWREESFAGFAGDWQPMPWYFRT  188 (227)
T ss_dssp             EEEEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEEECCTTTTCTTC-C--SCEEEEECCTTSSSCCCCEEEEECC
T ss_pred             cEEEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEEecCccccCccc-c--ccccchhhhhccccCcccceEEEec
Confidence            9999999999 5554  4889999999999   899988876543322110 0  000100000000      1123459


Q ss_pred             HHHHHHHHHhcCCceeEEEE
Q 022515          265 EKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~  284 (296)
                      .++|.++|+++||+++++..
T Consensus       189 ~~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          189 LASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             HHHHHHHHHHTTEEEEEEEC
T ss_pred             HHHHHHHHHHcCCeEEEEec
Confidence            99999999999999998876

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.65  E-value=9.8e-16  Score=130.83  Aligned_cols=145  Identities=11%  Similarity=0.077  Sum_probs=105.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl  199 (296)
                      ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+  .||+|++..++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            466789999999999999999887  579999999 899988765    35789999999987 554  49999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh-hhhhhhhhhhhc----CccccCHHHHHHHHHh
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET-QLFFDMLMMVLL----TGTERDEKEWTKLFTY  274 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~g~~rt~~e~~~ll~~  274 (296)
                      |++++.  ..+|++++++|+|   ||++++. ...++  .. +.... ..+..+......    ....++.+++.+++++
T Consensus       115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  185 (263)
T 2yqz_A          115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WDQAE--AS-PEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRR  185 (263)
T ss_dssp             GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EEEEC--CC-HHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHH
T ss_pred             hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ecCCC--cc-HHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHH
Confidence            999865  4789999999999   8988887 22211  11 10000 111111110000    1134578999999999


Q ss_pred             cCCceeEEE
Q 022515          275 AGFSDYKII  283 (296)
Q Consensus       275 aGf~~~~~~  283 (296)
                      +||+++.+.
T Consensus       186 ~Gf~~~~~~  194 (263)
T 2yqz_A          186 LGLKPRTRE  194 (263)
T ss_dssp             TTCCCEEEE
T ss_pred             cCCCcceEE
Confidence            999977653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.65  E-value=1e-15  Score=130.43  Aligned_cols=134  Identities=9%  Similarity=-0.028  Sum_probs=105.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C---------------------CCCeeEEeccCCC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D---------------------LANLKYVGGDMFE  185 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------------------~~ri~~~~~D~~~  185 (296)
                      .++.+|||+|||+|..+..|++.  +.+++++|+ +.+++.|++ .                     ..+|+++++|+++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            46689999999999999999987  679999999 999988754 2                     2689999999998


Q ss_pred             -CC---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcc
Q 022515          186 -AI---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGT  261 (296)
Q Consensus       186 -~~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  261 (296)
                       +.   ..||+|+...++|++++++...++++++++|+|   ||+++++....+.....                 ....
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~~~~~~~~~~~-----------------g~~~  204 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVAVLSYDPTKHA-----------------GPPF  204 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTSCC-----------------CSSC
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEEEEecCCccCC-----------------CCCC
Confidence             43   359999999999999988778899999999999   99987666543321100                 0011


Q ss_pred             ccCHHHHHHHHHhcCCceeEEEEc
Q 022515          262 ERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       262 ~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      ..+.+|+.++++. +|+++.+...
T Consensus       205 ~~~~~el~~~l~~-~f~v~~~~~~  227 (252)
T 2gb4_A          205 YVPSAELKRLFGT-KCSMQCLEEV  227 (252)
T ss_dssp             CCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             CCCHHHHHHHhhC-CeEEEEEecc
Confidence            2489999999988 5998776543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.63  E-value=2e-15  Score=131.43  Aligned_cols=141  Identities=14%  Similarity=0.131  Sum_probs=96.7

Q ss_pred             CCCEEEEecCCchHHHH----HHHHHCCCCeE--Eeccc-hhHhhccCC---C---CCCeeE--EeccCCC-C------C
Q 022515          130 GLNSLVDVGGGIGTAAK----AIAKAFPKLEC--TCFDL-PHVVNGLDS---D---LANLKY--VGGDMFE-A------I  187 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~---~---~~ri~~--~~~D~~~-~------~  187 (296)
                      ++.+|||||||+|.++.    .++.++|+.++  +++|. ++|++.|++   .   ..++++  ..++..+ +      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            45799999999997654    44556788854  99999 899988765   1   134444  4555533 2      2


Q ss_pred             C--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc--Ccccc
Q 022515          188 S--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL--TGTER  263 (296)
Q Consensus       188 p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~r  263 (296)
                      +  .||+|++.+++|+++|..  +.|++++++|||   ||++++.+... +   . .+..  .+.........  ....+
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~-~---~-~~~~--~~~~~~~~~~~~~~~~~~  199 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSG-S---S-GWDK--LWKKYGSRFPQDDLCQYI  199 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECT-T---S-HHHH--HHHHHGGGSCCCTTCCCC
T ss_pred             CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEEEecC-C---c-cHHH--HHHHHHHhccCCCcccCC
Confidence            2  499999999999999875  789999999999   99999986431 1   1 1111  11111100000  12346


Q ss_pred             CHHHHHHHHHhcCCceeEE
Q 022515          264 DEKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       264 t~~e~~~ll~~aGf~~~~~  282 (296)
                      +.++|.++|+++||+++..
T Consensus       200 ~~~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          200 TSDDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             CHHHHHHHHHHHTCCEEEE
T ss_pred             CHHHHHHHHHHCCCceEEE
Confidence            8999999999999998764

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.63  E-value=3.6e-15  Score=130.12  Aligned_cols=141  Identities=16%  Similarity=0.122  Sum_probs=103.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC----C---CCCeeEEeccCCC-CC--------Ccc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS----D---LANLKYVGGDMFE-AI--------SPA  190 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~---~~ri~~~~~D~~~-~~--------p~~  190 (296)
                      .++.+|||||||+|.++..+++.+ +..+++++|+ +.+++.|++    .   ..+++++.+|+.+ +.        ..|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999987 8999999999 999998875    2   6799999999988 43        249


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh-cCccc---cCHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL-LTGTE---RDEK  266 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---rt~~  266 (296)
                      |+|++..++|++ +  ...+|++++++|+|   ||.+++.+...+.....+   .....+.-..... ..+..   ...+
T Consensus       115 D~V~~~~~l~~~-~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~w~~p~~~  185 (299)
T 3g5t_A          115 DMITAVECAHWF-D--FEKFQRSAYANLRK---DGTIAIWGYADPIFPDYP---EFDDLMIEVPYGKQGLGPYWEQPGRS  185 (299)
T ss_dssp             EEEEEESCGGGS-C--HHHHHHHHHHHEEE---EEEEEEEEEEEEECTTCG---GGTTHHHHHHHCTTTTGGGSCTTHHH
T ss_pred             eEEeHhhHHHHh-C--HHHHHHHHHHhcCC---CcEEEEEecCCccccCcH---HHHHHHHHhccCcccccchhhchhhH
Confidence            999999999999 4  45899999999999   999998665433221111   1111111111100 01111   3456


Q ss_pred             HHHHHHHhcCCc
Q 022515          267 EWTKLFTYAGFS  278 (296)
Q Consensus       267 e~~~ll~~aGf~  278 (296)
                      .+.++++++||.
T Consensus       186 ~~~~~l~~~gfp  197 (299)
T 3g5t_A          186 RLRNMLKDSHLD  197 (299)
T ss_dssp             HHHTTTTTCCCC
T ss_pred             HHHHhhhccCCC
Confidence            779999999993

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.63  E-value=3e-15  Score=124.94  Aligned_cols=157  Identities=16%  Similarity=0.135  Sum_probs=109.8

Q ss_pred             ccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC---C
Q 022515          111 SDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE---A  186 (296)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~---~  186 (296)
                      .+.......+++.++   .+..+|||||||+|.++..+++. + .+++++|+ +.+++.+++..  .++..+|+.+   +
T Consensus        16 ~~~~~~~~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~--~~~~~~d~~~~~~~   88 (230)
T 3cc8_A           16 HYYNAVNPNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL--DHVVLGDIETMDMP   88 (230)
T ss_dssp             ----CCCHHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS--SEEEESCTTTCCCC
T ss_pred             hHHHHHHHHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC--CcEEEcchhhcCCC
Confidence            333334455555543   46689999999999999999988 4 89999999 89998887422  3788899875   2


Q ss_pred             CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh-hhhh------hhh
Q 022515          187 IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF-DMLM------MVL  257 (296)
Q Consensus       187 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~~~------~~~  257 (296)
                      .+  .||+|++..++|++++..  .+|++++++|+|   ||++++........      ....... ..+.      ...
T Consensus        89 ~~~~~fD~v~~~~~l~~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  157 (230)
T 3cc8_A           89 YEEEQFDCVIFGDVLEHLFDPW--AVIEKVKPYIKQ---NGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDK  157 (230)
T ss_dssp             SCTTCEEEEEEESCGGGSSCHH--HHHHHTGGGEEE---EEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBT
T ss_pred             CCCCccCEEEECChhhhcCCHH--HHHHHHHHHcCC---CCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCc
Confidence            33  499999999999998764  889999999999   89988876432110      0000000 0000      000


Q ss_pred             cCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          258 LTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .....++.++|.++++++||+++++...
T Consensus       158 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  185 (230)
T 3cc8_A          158 THIRFFTFNEMLRMFLKAGYSISKVDRV  185 (230)
T ss_dssp             TCCCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ceEEEecHHHHHHHHHHcCCeEEEEEec
Confidence            1124569999999999999999888765

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.62  E-value=1.9e-15  Score=125.86  Aligned_cols=135  Identities=16%  Similarity=0.152  Sum_probs=102.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCch
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDE  205 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~  205 (296)
                      ++.+|||||||+|.++..+++.      +++|+ +.+++.+++.  +++++.+|+.+ +.+  .||+|++.+++|++++.
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  118 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP  118 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH
Confidence            3789999999999999887654      99999 8999888733  79999999887 554  49999999999999875


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhh--hcCccccCHHHHHHHHHhcCCceeEE
Q 022515          206 ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMV--LLTGTERDEKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       206 ~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~g~~rt~~e~~~ll~~aGf~~~~~  282 (296)
                      .  .+|+++.++|+|   ||++++.+.....     +.   ...+... ...  ......++.++|.++|+++||+++++
T Consensus       119 ~--~~l~~~~~~L~p---gG~l~i~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~  185 (219)
T 1vlm_A          119 E--RALKEAYRILKK---GGYLIVGIVDRES-----FL---GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV  185 (219)
T ss_dssp             H--HHHHHHHHHEEE---EEEEEEEEECSSS-----HH---HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             H--HHHHHHHHHcCC---CcEEEEEEeCCcc-----HH---HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEE
Confidence            4  789999999999   8998887753211     11   1111110 000  01234569999999999999999888


Q ss_pred             EEc
Q 022515          283 IPI  285 (296)
Q Consensus       283 ~~~  285 (296)
                      ...
T Consensus       186 ~~~  188 (219)
T 1vlm_A          186 VQT  188 (219)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            765

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=4.8e-15  Score=122.07  Aligned_cols=132  Identities=11%  Similarity=0.112  Sum_probs=107.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC-CccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI-SPADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~-p~~D~v~~~~vlh  200 (296)
                      ..+..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++     ...++++..+|+.+.. ..||+|++...+|
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE  136 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence            34678999999999999999776 56779999999 999988876     2234999999998843 3699999988776


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                      +     ...+++++.+.|+|   ||++++.+....                            +.+++.++++++||+.+
T Consensus       137 ~-----~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~  180 (205)
T 3grz_A          137 I-----LLDLIPQLDSHLNE---DGQVIFSGIDYL----------------------------QLPKIEQALAENSFQID  180 (205)
T ss_dssp             H-----HHHHGGGSGGGEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEE
T ss_pred             H-----HHHHHHHHHHhcCC---CCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceE
Confidence            4     35789999999999   898888654321                            46788899999999999


Q ss_pred             EEEEcCCcceEEEEeC
Q 022515          281 KIIPILGLRSLIEVYP  296 (296)
Q Consensus       281 ~~~~~~~~~~vi~~~~  296 (296)
                      ++.....+.+++.-+|
T Consensus       181 ~~~~~~~w~~~~~~~~  196 (205)
T 3grz_A          181 LKMRAGRWIGLAISRK  196 (205)
T ss_dssp             EEEEETTEEEEEEEEC
T ss_pred             EeeccCCEEEEEEecc
Confidence            9988888888877654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.60  E-value=8.1e-15  Score=121.56  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=99.0

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeE
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVL  194 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~  194 (296)
                      .++..+.. ..+..+|||||||+|.++..+.     .+++++|+ +.          ++++..+|+.+ +.+  .||+|+
T Consensus        57 ~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~  120 (215)
T 2zfu_A           57 RIARDLRQ-RPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAV  120 (215)
T ss_dssp             HHHHHHHT-SCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEE
T ss_pred             HHHHHHhc-cCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEE
Confidence            34444431 3456899999999999998772     68999998 44          57888999887 554  499999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY  274 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~  274 (296)
                      +..++| +++  ...+|++++++|+|   ||++++.+....                          ..+.++|.+++++
T Consensus       121 ~~~~l~-~~~--~~~~l~~~~~~L~~---gG~l~i~~~~~~--------------------------~~~~~~~~~~l~~  168 (215)
T 2zfu_A          121 FCLSLM-GTN--IRDFLEEANRVLKP---GGLLKVAEVSSR--------------------------FEDVRTFLRAVTK  168 (215)
T ss_dssp             EESCCC-SSC--HHHHHHHHHHHEEE---EEEEEEEECGGG--------------------------CSCHHHHHHHHHH
T ss_pred             Eehhcc-ccC--HHHHHHHHHHhCCC---CeEEEEEEcCCC--------------------------CCCHHHHHHHHHH
Confidence            999998 444  45889999999999   999999874210                          1178999999999


Q ss_pred             cCCceeEEEEcCCcceEEEEeC
Q 022515          275 AGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       275 aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      +||+++......+...++.++|
T Consensus       169 ~Gf~~~~~~~~~~~~~~~~~~k  190 (215)
T 2zfu_A          169 LGFKIVSKDLTNSHFFLFDFQK  190 (215)
T ss_dssp             TTEEEEEEECCSTTCEEEEEEE
T ss_pred             CCCEEEEEecCCCeEEEEEEEe
Confidence            9999988766665566666553

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.60  E-value=1.2e-15  Score=125.78  Aligned_cols=151  Identities=11%  Similarity=0.025  Sum_probs=108.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl  199 (296)
                      ..+..+|||||||+|.++..++.. ++.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+  .||+|++..++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            445789999999999986555544 4679999999 899988875    24679999999988 554  49999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh-hhhcCccccCHHHHHHHHHhcCCc
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM-MVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                      ||++.++...++++++++|+|   ||++++.+...++.............+.... ........++.+++.++++++||.
T Consensus       100 ~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  176 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKP---GGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVL  176 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCC---CcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCce
Confidence            999877788999999999999   8999988876544321100000000000000 000112456999999999999987


Q ss_pred             eeEE
Q 022515          279 DYKI  282 (296)
Q Consensus       279 ~~~~  282 (296)
                      ..+.
T Consensus       177 ~~~~  180 (209)
T 2p8j_A          177 FKED  180 (209)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            6544

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.59  E-value=7.7e-15  Score=127.14  Aligned_cols=142  Identities=16%  Similarity=0.165  Sum_probs=109.8

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~  190 (296)
                      ..+++.++  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...++++..+|+.+ +.+ .|
T Consensus       110 ~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f  185 (286)
T 3m70_A          110 GDVVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY  185 (286)
T ss_dssp             HHHHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred             HHHHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence            34445444  446789999999999999999988  669999999 899988876    23389999999988 444 59


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++..++|+++++....+|++++++|+|   ||.++++.....+....+               ......++.+++.+
T Consensus       186 D~i~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~l~~  247 (286)
T 3m70_A          186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIVAAMSTDDVPCP---------------LPFSFTFAENELKE  247 (286)
T ss_dssp             EEEEECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEEEEBCCSSSCCS---------------SCCSCCBCTTHHHH
T ss_pred             cEEEEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEEEecCCCCCCCC---------------CCccccCCHHHHHH
Confidence            999999999999988888999999999999   999888776554432211               00122347788888


Q ss_pred             HHHhcCCceeEEE
Q 022515          271 LFTYAGFSDYKII  283 (296)
Q Consensus       271 ll~~aGf~~~~~~  283 (296)
                      +++.  |+++...
T Consensus       248 ~~~~--~~~~~~~  258 (286)
T 3m70_A          248 YYKD--WEFLEYN  258 (286)
T ss_dssp             HTTT--SEEEEEE
T ss_pred             HhcC--CEEEEEE
Confidence            8865  8877664

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.59  E-value=6.1e-15  Score=128.17  Aligned_cols=155  Identities=14%  Similarity=0.064  Sum_probs=109.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-C--ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-S--PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-p--~~D~v~~~  196 (296)
                      ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++      ...+++++.+|+.+ +. +  .||+|++.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            356789999999999999998776 4569999999 899988875      23579999999988 54 2  49999999


Q ss_pred             hhhcc--CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC--------CCCch----------hh-hhhhhhhhhh
Q 022515          197 WILHD--WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK--------GDDKS----------IE-TQLFFDMLMM  255 (296)
Q Consensus       197 ~vlh~--~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~--------~~~~~----------~~-~~~~~~~~~~  255 (296)
                      .++|+  .+.++...+|++++++|+|   ||++++.........        ....+          .. ....+.+...
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~  217 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL  217 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence            99998  5666778999999999999   899888775421100        00000          00 0000000000


Q ss_pred             hh---cCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515          256 VL---LTGTERDEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       256 ~~---~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      ..   .....++.+++.++++++||+++++....
T Consensus       218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~  251 (298)
T 1ri5_A          218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI  251 (298)
T ss_dssp             TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred             hhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence            00   11234589999999999999999887653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.59  E-value=6.7e-16  Score=134.21  Aligned_cols=108  Identities=15%  Similarity=0.157  Sum_probs=88.5

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC-C
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE-A  186 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~-~  186 (296)
                      ..+...++  ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++         ...++.+..+|+.+ +
T Consensus        47 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           47 AWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHH--HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHhc--ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            34444444  456789999999999999999998  459999999 899988854         13678899999887 4


Q ss_pred             ---CC--ccceeEeh-hhhccCCc-----hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          187 ---IS--PADAVLLK-WILHDWND-----EECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       187 ---~p--~~D~v~~~-~vlh~~~d-----~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                         .+  .||+|++. +++||+++     ++...+|++++++|+|   ||++++...
T Consensus       123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  176 (293)
T 3thr_A          123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVIDHR  176 (293)
T ss_dssp             HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEEeC
Confidence               33  59999998 89999998     6677999999999999   888887764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.59  E-value=2.1e-14  Score=118.11  Aligned_cols=122  Identities=13%  Similarity=0.199  Sum_probs=99.4

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p  188 (296)
                      ..++..+.  ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++     ..++++++.+|+.+..   +
T Consensus        30 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  107 (204)
T 3e05_A           30 AVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP  107 (204)
T ss_dssp             HHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred             HHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence            34455555  66778999999999999999999999999999999 999988876     3478999999997732   4


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      .||+|++...++     ....+++++.+.|+|   ||++++......                            +.+++
T Consensus       108 ~~D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~~~~~~----------------------------~~~~~  151 (204)
T 3e05_A          108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLNAVTLD----------------------------TLTKA  151 (204)
T ss_dssp             CCSEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEEECBHH----------------------------HHHHH
T ss_pred             CCCEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEEecccc----------------------------cHHHH
Confidence            699999988775     345889999999999   999888653210                            45678


Q ss_pred             HHHHHhcCC
Q 022515          269 TKLFTYAGF  277 (296)
Q Consensus       269 ~~ll~~aGf  277 (296)
                      .++++++||
T Consensus       152 ~~~l~~~g~  160 (204)
T 3e05_A          152 VEFLEDHGY  160 (204)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHCCC
Confidence            889999998

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.59  E-value=2e-14  Score=120.70  Aligned_cols=141  Identities=14%  Similarity=0.165  Sum_probs=102.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC-----C-CccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA-----I-SPADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~-----~-p~~D~v~~~~  197 (296)
                      +.++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++   ...++.++.+|+.++     . ..||+|+   
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~---  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY---  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence            55778999999999999999999988789999999 888876654   347899999998762     2 2499998   


Q ss_pred             hhccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515          198 ILHDWNDE-ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       198 vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                        |++++. ....+++++.+.|+|   ||++++. .........++  . ..              ...+++. +|+++|
T Consensus       149 --~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~--~-~~--------------~~~~~l~-~l~~~G  204 (230)
T 1fbn_A          149 --EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTKD--P-KE--------------IFKEQKE-ILEAGG  204 (230)
T ss_dssp             --ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSSC--H-HH--------------HHHHHHH-HHHHHT
T ss_pred             --EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCCC--H-HH--------------hhHHHHH-HHHHCC
Confidence              565554 335679999999999   8998887 22111111100  0 00              0236787 899999


Q ss_pred             CceeEEEEcCCc---ceEEEEe
Q 022515          277 FSDYKIIPILGL---RSLIEVY  295 (296)
Q Consensus       277 f~~~~~~~~~~~---~~vi~~~  295 (296)
                      |+.+++..+..+   ..++.++
T Consensus       205 f~~~~~~~~~~~~~~~~~v~~~  226 (230)
T 1fbn_A          205 FKIVDEVDIEPFEKDHVMFVGI  226 (230)
T ss_dssp             EEEEEEEECTTTSTTEEEEEEE
T ss_pred             CEEEEEEccCCCccceEEEEEE
Confidence            999998887554   4555554

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.58  E-value=4.9e-15  Score=126.45  Aligned_cols=98  Identities=11%  Similarity=0.147  Sum_probs=84.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      ....+|||||||+|.++..|++.+  .+++++|+ +.|++.|+ ...+++++.+|+.+ +++  .||+|++..++|+++.
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~-~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~  114 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQAL-RHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL  114 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCC-CCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhh-hcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH
Confidence            345799999999999999999875  58999999 99999998 67789999999988 665  4999999999987764


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      +   +++++++++|||   ||++++.....+
T Consensus       115 ~---~~~~e~~rvLkp---gG~l~~~~~~~~  139 (257)
T 4hg2_A          115 D---RFWAELRRVARP---GAVFAAVTYGLT  139 (257)
T ss_dssp             H---HHHHHHHHHEEE---EEEEEEEEECCC
T ss_pred             H---HHHHHHHHHcCC---CCEEEEEECCCC
Confidence            3   679999999999   999998876443

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.58  E-value=3e-14  Score=120.96  Aligned_cols=98  Identities=21%  Similarity=0.332  Sum_probs=82.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEeh-hhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLK-WIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~-~vl  199 (296)
                      ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ +.+ .||+|++. ..+
T Consensus        39 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  116 (252)
T 1wzn_A           39 KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTI  116 (252)
T ss_dssp             SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEEEcCCch
Confidence            356689999999999999999987  679999999 999988875    34579999999988 544 59999986 466


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      |+++.++..++|++++++|+|   ||.+++.
T Consensus       117 ~~~~~~~~~~~l~~~~~~L~p---gG~li~~  144 (252)
T 1wzn_A          117 MYFDEEDLRKLFSKVAEALKP---GGVFITD  144 (252)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence            777777788999999999999   8877653

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.58  E-value=1.3e-15  Score=130.25  Aligned_cols=141  Identities=14%  Similarity=0.106  Sum_probs=104.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCC-------------------------------
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLA-------------------------------  174 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~-------------------------------  174 (296)
                      .++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++  ...                               
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            4567999999999999998887755 58999999 899988865  221                               


Q ss_pred             -Ce-eEEeccCCC-CC------CccceeEehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCch
Q 022515          175 -NL-KYVGGDMFE-AI------SPADAVLLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS  243 (296)
Q Consensus       175 -ri-~~~~~D~~~-~~------p~~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~  243 (296)
                       ++ +++.+|+.+ +.      ..||+|++..++|+.+..  +...+|++++++|+|   ||++++.+......     +
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~~~~~-----~  205 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMVDALKSSY-----Y  205 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-----E
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEEecCCCce-----E
Confidence             27 999999987 22      249999999999955432  556899999999999   99998887432110     0


Q ss_pred             hhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515          244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       244 ~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                       ...   +    ........+.+++.++|+++||+++++...+
T Consensus       206 -~~~---~----~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          206 -MIG---E----QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             -EET---T----EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             -EcC---C----ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence             000   0    0011234488999999999999999887654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.57  E-value=1.5e-14  Score=132.03  Aligned_cols=151  Identities=10%  Similarity=0.015  Sum_probs=107.1

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC------CC-
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE------AI-  187 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~------~~-  187 (296)
                      ....+++.+.  ..+..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++.  .+......+..      +. 
T Consensus        95 ~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~  168 (416)
T 4e2x_A           95 LARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRT  168 (416)
T ss_dssp             HHHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccC
Confidence            3455666666  567789999999999999999987  559999999 8999988742  23333222221      12 


Q ss_pred             -CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHH
Q 022515          188 -SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEK  266 (296)
Q Consensus       188 -p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~  266 (296)
                       ..||+|++.+++||+++.  ..+|++++++|+|   ||++++........         .....+......+...++.+
T Consensus       169 ~~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~~~~~~~~---------~~~~~~~~~~~~~~~~~s~~  234 (416)
T 4e2x_A          169 EGPANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFEDPYLGDI---------VAKTSFDQIFDEHFFLFSAT  234 (416)
T ss_dssp             HCCEEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEEEECHHHH---------HHHTCGGGCSTTCCEECCHH
T ss_pred             CCCEEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEEeCChHHh---------hhhcchhhhhhhhhhcCCHH
Confidence             259999999999999865  4889999999999   88888765432110         00000000001233456999


Q ss_pred             HHHHHHHhcCCceeEEEEcC
Q 022515          267 EWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       267 e~~~ll~~aGf~~~~~~~~~  286 (296)
                      +|.++++++||+++++...+
T Consensus       235 ~l~~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          235 SVQGMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHHcCCEEEEEEEcc
Confidence            99999999999999988765

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.57  E-value=1.4e-14  Score=123.46  Aligned_cols=143  Identities=21%  Similarity=0.233  Sum_probs=103.4

Q ss_pred             CCCCEEEEecCCc--hHHHHHH-HHHCCCCeEEeccc-hhHhhccCC-C----CCCeeEEeccCCCC-C--------Ccc
Q 022515          129 EGLNSLVDVGGGI--GTAAKAI-AKAFPKLECTCFDL-PHVVNGLDS-D----LANLKYVGGDMFEA-I--------SPA  190 (296)
Q Consensus       129 ~~~~~vLDvGgG~--G~~~~~l-~~~~p~~~~~~~D~-~~~~~~a~~-~----~~ri~~~~~D~~~~-~--------p~~  190 (296)
                      .+..+|||||||+  +.++.++ .+..|+.+++++|. |.|++.|++ .    ..+++|+.+|+.+. .        ..+
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~  156 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL  156 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence            3568999999997  3344444 45689999999999 999999986 1    34799999999873 1        125


Q ss_pred             c-----eeEehhhhccCCchH-HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515          191 D-----AVLLKWILHDWNDEE-CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD  264 (296)
Q Consensus       191 D-----~v~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt  264 (296)
                      |     ++++..+||+.++++ ...+|++++++|+|   ||+|++.+...+..    +. ......+.+.........||
T Consensus       157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls~~~~d~~----p~-~~~~~~~~~~~~g~p~~~rs  228 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMSIGTAEFA----PQ-EVGRVAREYAARNMPMRLRT  228 (277)
T ss_dssp             CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEEEECCTTS----HH-HHHHHHHHHHHTTCCCCCCC
T ss_pred             CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEEeccCCCC----HH-HHHHHHHHHHhcCCCCccCC
Confidence            5     688999999999876 47899999999999   99999888765421    11 11122222222222345689


Q ss_pred             HHHHHHHHHhcCCceeE
Q 022515          265 EKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~  281 (296)
                      .+|+.++|.  ||+.++
T Consensus       229 ~~ei~~~f~--Glelve  243 (277)
T 3giw_A          229 HAEAEEFFE--GLELVE  243 (277)
T ss_dssp             HHHHHHTTT--TSEECT
T ss_pred             HHHHHHHhC--CCcccC
Confidence            999999995  998654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.56  E-value=1.6e-14  Score=120.15  Aligned_cols=144  Identities=12%  Similarity=0.047  Sum_probs=96.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc----cCC-----CCCCeeEEeccCCC-CCC-ccceeE-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG----LDS-----DLANLKYVGGDMFE-AIS-PADAVL-  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~-----~~~ri~~~~~D~~~-~~p-~~D~v~-  194 (296)
                      ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.    +++     ...+++++.+|+.+ +.+ +.|.|+ 
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~  104 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV  104 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence            56678999999999999999999999999999999 887664    222     34589999999988 544 125544 


Q ss_pred             --ehhhh--ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          195 --LKWIL--HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       195 --~~~vl--h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                        ....+  |+.++.  ..+|++++++|||   ||++++...........   ..   ....    .........+++..
T Consensus       105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~---~~---~~~~----~~~~~~~~~~~l~~  169 (218)
T 3mq2_A          105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVALNLHAWRPSV---PE---VGEH----PEPTPDSADEWLAP  169 (218)
T ss_dssp             ESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEEEEGGGBTTBC---GG---GTTC----CCCCHHHHHHHHHH
T ss_pred             EccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEEeccccccccc---cc---cccC----CccchHHHHHHHHH
Confidence              23333  255554  3789999999999   88888743221111000   00   0000    00011123456888


Q ss_pred             HHHhcCCceeEEEEcC
Q 022515          271 LFTYAGFSDYKIIPIL  286 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~  286 (296)
                      +++++||++.++..+.
T Consensus       170 ~l~~aGf~i~~~~~~~  185 (218)
T 3mq2_A          170 RYAEAGWKLADCRYLE  185 (218)
T ss_dssp             HHHHTTEEEEEEEEEC
T ss_pred             HHHHcCCCceeeeccc
Confidence            9999999998877653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.56  E-value=6.8e-14  Score=120.70  Aligned_cols=136  Identities=19%  Similarity=0.221  Sum_probs=107.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC--CccceeEeh----
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI--SPADAVLLK----  196 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~--p~~D~v~~~----  196 (296)
                      .+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++     ...+++++.+|++++.  ..||+|+++    
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence            3557999999999999999999999999999999 899988875     3358999999999854  259999997    


Q ss_pred             ---------hhhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515          197 ---------WILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL  257 (296)
Q Consensus       197 ---------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (296)
                               .++++.|.          +....+++++.+.|+|   ||++++...      .                  
T Consensus       188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~~~------~------------------  240 (276)
T 2b3t_A          188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLEHG------W------------------  240 (276)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC------S------------------
T ss_pred             CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEEEC------c------------------
Confidence                     45555442          3446899999999999   787776421      0                  


Q ss_pred             cCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEEeC
Q 022515          258 LTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEVYP  296 (296)
Q Consensus       258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~  296 (296)
                           .+.+++.++++++||+.+++.. ..+...++.+++
T Consensus       241 -----~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          241 -----QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             -----SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             -----hHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence                 1567889999999999887765 456667777653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.56  E-value=7.3e-14  Score=111.75  Aligned_cols=126  Identities=13%  Similarity=0.162  Sum_probs=100.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC--ccceeEehhhhccCCch
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS--PADAVLLKWILHDWNDE  205 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~~~d~  205 (296)
                      .++.+|||+|||+|.++..+++..   +++++|+ +.+++.    ..+++++.+|+.++.+  .||+|+++..+|..++.
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhhcccCCCCEEEECCCCccCCcc
Confidence            355699999999999999999886   9999999 888887    4679999999998554  49999998888865544


Q ss_pred             -------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          206 -------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       206 -------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                             +...+++++.+.+ |   ||++++.+...                            .+.+++.++++++||+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l-p---gG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~  142 (170)
T 3q87_B           95 PIIGGGYLGREVIDRFVDAV-T---VGMLYLLVIEA----------------------------NRPKEVLARLEERGYG  142 (170)
T ss_dssp             TTTBCCGGGCHHHHHHHHHC-C---SSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCE
T ss_pred             ccccCCcchHHHHHHHHhhC-C---CCEEEEEEecC----------------------------CCHHHHHHHHHHCCCc
Confidence                   3457889999999 8   99998877321                            0567889999999999


Q ss_pred             eeEEEEc-CCcceEEE
Q 022515          279 DYKIIPI-LGLRSLIE  293 (296)
Q Consensus       279 ~~~~~~~-~~~~~vi~  293 (296)
                      ...+... .+...++.
T Consensus       143 ~~~~~~~~~~~e~~~~  158 (170)
T 3q87_B          143 TRILKVRKILGETVYI  158 (170)
T ss_dssp             EEEEEEEECSSSEEEE
T ss_pred             EEEEEeeccCCceEEE
Confidence            8887765 34444443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.55  E-value=2.2e-15  Score=129.22  Aligned_cols=140  Identities=16%  Similarity=0.101  Sum_probs=98.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---C-C------------------------------
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---D-L------------------------------  173 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~-~------------------------------  173 (296)
                      .++.+|||||||+|.++..++... ..+++++|+ +.+++.|++   . .                              
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            456799999999998876555442 126999999 899987654   1 0                              


Q ss_pred             CCee-EEeccCCCC-------CCccceeEehhhhccC-C-chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCch
Q 022515          174 ANLK-YVGGDMFEA-------ISPADAVLLKWILHDW-N-DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKS  243 (296)
Q Consensus       174 ~ri~-~~~~D~~~~-------~p~~D~v~~~~vlh~~-~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~  243 (296)
                      .++. ++.+|+.+.       .+.||+|+++.+||+. + .++..++|++++++|||   ||++++.+......     +
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~~~~~~~~-----~  204 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPS-----Y  204 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCE-----E
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEEEeecCcc-----c
Confidence            1233 889999872       2359999999999985 3 24567899999999999   99998886432110     0


Q ss_pred             hhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          244 IETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       244 ~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                           ...-   ..+.....+.+++.++|+++||+++++...
T Consensus       205 -----~~g~---~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          205 -----MVGK---REFSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             -----EETT---EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             -----eeCC---eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence                 0000   001122348999999999999999888764

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.54  E-value=3.7e-14  Score=116.35  Aligned_cols=134  Identities=10%  Similarity=0.019  Sum_probs=101.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~  201 (296)
                      +. +|||||||+|.++..+++.  +.+++++|+ +.+++.+++    ...++++..+|+.+ +.+  .||+|++.  +++
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~  104 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH  104 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred             CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence            44 9999999999999998886  569999999 899988875    23489999999988 544  49999985  345


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                      ++.++...+|++++++|+|   ||++++.+........       .  ...   .......++.+++.++++  ||+++.
T Consensus       105 ~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~-------~--~~~---~~~~~~~~~~~~l~~~l~--Gf~v~~  167 (202)
T 2kw5_A          105 LPSSLRQQLYPKVYQGLKP---GGVFILEGFAPEQLQY-------N--TGG---PKDLDLLPKLETLQSELP--SLNWLI  167 (202)
T ss_dssp             CCHHHHHHHHHHHHTTCCS---SEEEEEEEECTTTGGG-------T--SCC---SSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred             CCHHHHHHHHHHHHHhcCC---CcEEEEEEeccccccC-------C--CCC---CCcceeecCHHHHHHHhc--CceEEE
Confidence            6767778999999999999   8998888764332100       0  000   001123569999999999  999988


Q ss_pred             EEEc
Q 022515          282 IIPI  285 (296)
Q Consensus       282 ~~~~  285 (296)
                      +...
T Consensus       168 ~~~~  171 (202)
T 2kw5_A          168 ANNL  171 (202)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.53  E-value=4.7e-15  Score=128.81  Aligned_cols=139  Identities=16%  Similarity=0.178  Sum_probs=97.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CC-----------C---------------------
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DL-----------A---------------------  174 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~-----------~---------------------  174 (296)
                      ++.+|||||||+|.++ .++...+..+++++|+ +.+++.|++  ..           .                     
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            5689999999999944 3444445669999999 899987654  10           0                     


Q ss_pred             -CeeEEeccCCC--C-----CC--ccceeEehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc
Q 022515          175 -NLKYVGGDMFE--A-----IS--PADAVLLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK  242 (296)
Q Consensus       175 -ri~~~~~D~~~--~-----~p--~~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~  242 (296)
                       .++++.+|+.+  +     .+  .||+|++..++|+.+++  +...+|++++++|||   ||++++.+......     
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~~~~~~~~-----  221 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESW-----  221 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCE-----
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEEEecCcce-----
Confidence             14566678876  2     22  29999999999985533  567899999999999   99999876432110     


Q ss_pred             hhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          243 SIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      + ..   .+.    ......++.++|.++|+++||+++++...
T Consensus       222 ~-~~---~~~----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  256 (289)
T 2g72_A          222 Y-LA---GEA----RLTVVPVSEEEVREALVRSGYKVRDLRTY  256 (289)
T ss_dssp             E-EE---TTE----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             E-Ec---CCe----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence            0 00   000    00122458999999999999999887654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.52  E-value=2.2e-14  Score=120.05  Aligned_cols=147  Identities=12%  Similarity=0.078  Sum_probs=92.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hh-Hhhcc---CC-----CCCCeeEEeccCCC-CCCccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PH-VVNGL---DS-----DLANLKYVGGDMFE-AISPADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a---~~-----~~~ri~~~~~D~~~-~~p~~D~v~~~~  197 (296)
                      .++.+|||||||+|.++..+++++|+.+++++|+ ++ +++.|   ++     ...+++++.+|..+ +...+|.|.+..
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            4667999999999999999999999999999999 45 44443   54     34579999999887 322246555544


Q ss_pred             hhccCCch------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHH
Q 022515          198 ILHDWNDE------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKL  271 (296)
Q Consensus       198 vlh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l  271 (296)
                      +.+.|+..      ....+|++++++|||   ||++++....... ....++ .   .....   .........+++.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~~~~~~~-~~~~~~-~---~~~~~---~~~~~~~~~~el~~~  171 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFVTTYSDS-YEEAEI-K---KRGLP---LLSKAYFLSEQYKAE  171 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEEECCCC----------------------CCHHHHHSHHHHHH
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEEEecccc-chhchh-h---hcCCC---CCChhhcchHHHHHH
Confidence            44333321      113679999999999   9999884433322 110000 0   00000   000001122469999


Q ss_pred             HHhcCCceeEEEEcC
Q 022515          272 FTYAGFSDYKIIPIL  286 (296)
Q Consensus       272 l~~aGf~~~~~~~~~  286 (296)
                      ++++||++..+...+
T Consensus       172 l~~aGf~v~~~~~~~  186 (225)
T 3p2e_A          172 LSNSGFRIDDVKELD  186 (225)
T ss_dssp             HHHHTCEEEEEEEEC
T ss_pred             HHHcCCCeeeeeecC
Confidence            999999988876654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.52  E-value=2.2e-14  Score=118.51  Aligned_cols=130  Identities=13%  Similarity=0.075  Sum_probs=95.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      ++.+|||||||+|.++..+     +. +++++|+ +.+++.+++...+++++.+|+.+ +.+  .||+|++.+++|++++
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  110 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED  110 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence            6789999999999999877     45 8999999 89999887633789999999988 554  4999999999999986


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhhhcCccccCHHHHHHHHHhcC
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                      ..  ++|++++++|+|   ||++++.+.....     ++.......... .......+.++.+++.++++  |
T Consensus       111 ~~--~~l~~~~~~L~p---gG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          111 VE--RVLLEARRVLRP---GGALVVGVLEALS-----PWAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             HH--HHHHHHHHHEEE---EEEEEEEEECTTS-----HHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             HH--HHHHHHHHHcCC---CCEEEEEecCCcC-----cHHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            54  889999999999   8998888753221     111100000000 00001234569999999999  7

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.52  E-value=2.7e-14  Score=118.41  Aligned_cols=100  Identities=11%  Similarity=0.235  Sum_probs=85.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC-ccceeEehhhhcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS-PADAVLLKWILHD  201 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~  201 (296)
                      ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ...+++++.+|+.+ +.+ .||+|++..++||
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            4566899999999999999999884  58999999 899988876   34589999999998 422 5999999999999


Q ss_pred             CCc-hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          202 WND-EECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       202 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +++ +...++|++++++|+|   ||.+++...
T Consensus       127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~  155 (216)
T 3ofk_A          127 LEDMTQMRTAIDNMVKMLAP---GGHLVFGSA  155 (216)
T ss_dssp             SSSHHHHHHHHHHHHHTEEE---EEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHcCC---CCEEEEEec
Confidence            997 4556899999999999   888887664

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.52  E-value=5e-14  Score=113.00  Aligned_cols=124  Identities=17%  Similarity=0.193  Sum_probs=95.4

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC----
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI----  187 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~----  187 (296)
                      .++..+.  ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++      ..+++ ++.+|..+.+    
T Consensus        16 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~   92 (178)
T 3hm2_A           16 LAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP   92 (178)
T ss_dssp             HHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred             HHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence            3344444  56678999999999999999999999999999999 889988875      23478 8889886632    


Q ss_pred             CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                      +.||+|++..++|+      ..+++++.+.|+|   ||++++.+...+                            +..+
T Consensus        93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~  135 (178)
T 3hm2_A           93 DNPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVANAVTVE----------------------------SEQM  135 (178)
T ss_dssp             SCCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEEECSHH----------------------------HHHH
T ss_pred             CCCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEEeeccc----------------------------cHHH
Confidence            35999999999986      3689999999999   999887663211                            3345


Q ss_pred             HHHHHHhcCCceeEE
Q 022515          268 WTKLFTYAGFSDYKI  282 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~  282 (296)
                      +.+++++.|++..++
T Consensus       136 ~~~~~~~~~~~~~~~  150 (178)
T 3hm2_A          136 LWALRKQFGGTISSF  150 (178)
T ss_dssp             HHHHHHHHCCEEEEE
T ss_pred             HHHHHHHcCCeeEEE
Confidence            667778888776554

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.51  E-value=1.4e-14  Score=119.70  Aligned_cols=136  Identities=18%  Similarity=0.188  Sum_probs=88.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC-------CccceeEeh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI-------SPADAVLLK  196 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~-------p~~D~v~~~  196 (296)
                      .++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++    ...+++++.+|+.++.       ..||+|++.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence            5678999999999999999999999999999999 999998886    1127899999988732       359999995


Q ss_pred             h------hhccCCchHH------------------HHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh
Q 022515          197 W------ILHDWNDEEC------------------VKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM  252 (296)
Q Consensus       197 ~------vlh~~~d~~~------------------~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~  252 (296)
                      -      .+++++.+..                  ..+++++++.|+|   ||++++++...                  
T Consensus       109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~------------------  167 (215)
T 4dzr_A          109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFLEVGH------------------  167 (215)
T ss_dssp             CCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEEECTT------------------
T ss_pred             CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEEEECC------------------
Confidence            3      3333333222                  6789999999999   99966665310                  


Q ss_pred             hhhhhcCccccCHHHHHHHHH--hcCCceeEEEEcC-CcceEEEEe
Q 022515          253 LMMVLLTGTERDEKEWTKLFT--YAGFSDYKIIPIL-GLRSLIEVY  295 (296)
Q Consensus       253 ~~~~~~~g~~rt~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~~  295 (296)
                                ...+++.++++  ++||+.+++.+.. +...++.++
T Consensus       168 ----------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~  203 (215)
T 4dzr_A          168 ----------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVT  203 (215)
T ss_dssp             ----------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEE
T ss_pred             ----------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEE
Confidence                      04567888899  9999988877653 444555543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.50  E-value=2e-13  Score=110.67  Aligned_cols=142  Identities=15%  Similarity=0.315  Sum_probs=106.9

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCC--CeeEEeccCCCCCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLA--NLKYVGGDMFEAIS-  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~--ri~~~~~D~~~~~p-  188 (296)
                      ..+++.+.  ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++     ...  |+++..+|+.+..+ 
T Consensus        42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  117 (194)
T 1dus_A           42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence            44555555  557789999999999999999888  779999999 899888875     223  59999999988443 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                       .||+|++...+|+ ..+....+++++.+.|+|   ||++++......                            ...+
T Consensus       118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~  165 (194)
T 1dus_A          118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVVIQTKQ----------------------------GAKS  165 (194)
T ss_dssp             SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEEEESTH----------------------------HHHH
T ss_pred             CCceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEEECCCC----------------------------ChHH
Confidence             5999999888774 345567899999999999   898888764210                            1235


Q ss_pred             HHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          268 WTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      +.+.+++. |..+++........++.++|
T Consensus       166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence            66777777 66677766655556666554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.48  E-value=7.7e-15  Score=123.81  Aligned_cols=134  Identities=15%  Similarity=0.061  Sum_probs=92.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC---CCC--ccceeEe---
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE---AIS--PADAVLL---  195 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~---~~p--~~D~v~~---  195 (296)
                      .++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++    ...++.++.+|...   +.+  .||.|++   
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            46789999999999999999887764 8999999 999999876    56678888888654   233  3787764   


Q ss_pred             --hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515          196 --KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT  273 (296)
Q Consensus       196 --~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~  273 (296)
                        ...++++++.  ..++++++|+|||   ||++++++.........       ..++       .-.....+.+...|.
T Consensus       138 ~~~~~~~~~~~~--~~~~~e~~rvLkP---GG~l~f~~~~~~~~~~~-------~~~~-------~~~~~~~~~~~~~L~  198 (236)
T 3orh_A          138 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYCNLTSWGELMK-------SKYS-------DITIMFEETQVPALL  198 (236)
T ss_dssp             CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEECCHHHHHHHTT-------TTCS-------CHHHHHHHHTHHHHH
T ss_pred             ecccchhhhcch--hhhhhhhhheeCC---CCEEEEEecCCchhhhh-------hhhh-------hhhhhhHHHHHHHHH
Confidence              5555655554  4789999999999   88887655322110000       0000       000113456677889


Q ss_pred             hcCCceeEE
Q 022515          274 YAGFSDYKI  282 (296)
Q Consensus       274 ~aGf~~~~~  282 (296)
                      ++||++..+
T Consensus       199 eaGF~~~~i  207 (236)
T 3orh_A          199 EAGFRRENI  207 (236)
T ss_dssp             HHTCCGGGE
T ss_pred             HcCCeEEEE
Confidence            999997554

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.48  E-value=9e-14  Score=119.89  Aligned_cols=126  Identities=17%  Similarity=0.173  Sum_probs=96.6

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC---CC---CCeeEEeccCCCCCC--
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS---DL---ANLKYVGGDMFEAIS--  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~~---~ri~~~~~D~~~~~p--  188 (296)
                      .++..+.  ..++.+|||+|||+|.++..+++. +|..+++++|+ +.+++.+++   ..   +++++..+|+.++.+  
T Consensus       101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  178 (275)
T 1yb2_A          101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  178 (275)
T ss_dssp             -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence            4445555  667889999999999999999998 78899999999 999988775   22   689999999988544  


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      .||+|++     ++++..  .+|+++.++|+|   ||++++......                            ..+++
T Consensus       179 ~fD~Vi~-----~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~----------------------------~~~~~  220 (275)
T 1yb2_A          179 MYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYLPNFD----------------------------QSEKT  220 (275)
T ss_dssp             CEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEESSHH----------------------------HHHHH
T ss_pred             CccEEEE-----cCcCHH--HHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHHH
Confidence            4999998     455543  789999999999   899888763110                            23466


Q ss_pred             HHHHHhcCCceeEEEE
Q 022515          269 TKLFTYAGFSDYKIIP  284 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~  284 (296)
                      .+.++++||+.+++..
T Consensus       221 ~~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          221 VLSLSASGMHHLETVE  236 (275)
T ss_dssp             HHHSGGGTEEEEEEEE
T ss_pred             HHHHHHCCCeEEEEEE
Confidence            6778888998877665

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.47  E-value=2.2e-13  Score=113.87  Aligned_cols=142  Identities=13%  Similarity=0.134  Sum_probs=101.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC--CC----ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA--IS----PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~--~p----~~D~v~~~  196 (296)
                      ++++.+|||+|||+|.++..+++. -|.-+++++|+ |.+++.+++   ...++..+.+|...+  .+    .+|+|++.
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            688999999999999999999997 48889999999 999987765   456799999888762  11    37888764


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                      .  ++..  +...++++++++|||   ||+++|.......+...++                   ....++-.+.|+++|
T Consensus       155 ~--~~~~--~~~~~l~~~~r~LKp---GG~lvI~ik~r~~d~~~p~-------------------~~~~~~ev~~L~~~G  208 (233)
T 4df3_A          155 V--AQPE--QAAIVVRNARFFLRD---GGYMLMAIKARSIDVTTEP-------------------SEVYKREIKTLMDGG  208 (233)
T ss_dssp             C--CCTT--HHHHHHHHHHHHEEE---EEEEEEEEECCHHHHHTCC-------------------CHHHHHHHHHHHHTT
T ss_pred             c--cCCh--hHHHHHHHHHHhccC---CCEEEEEEecccCCCCCCh-------------------HHHHHHHHHHHHHCC
Confidence            2  2222  345789999999999   9999987543322111100                   001234456789999


Q ss_pred             CceeEEEEcCCc---ceEEEEe
Q 022515          277 FSDYKIIPILGL---RSLIEVY  295 (296)
Q Consensus       277 f~~~~~~~~~~~---~~vi~~~  295 (296)
                      |+.++...+..+   ..++.++
T Consensus       209 F~l~e~i~L~pf~~~H~lv~~~  230 (233)
T 4df3_A          209 LEIKDVVHLDPFDRDHAMIYAV  230 (233)
T ss_dssp             CCEEEEEECTTTSTTEEEEEEC
T ss_pred             CEEEEEEccCCCCCceEEEEEE
Confidence            999998877543   4455544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.46  E-value=6.8e-13  Score=109.80  Aligned_cols=136  Identities=15%  Similarity=0.145  Sum_probs=94.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhh----ccCCCCCCeeEEeccCCCC-----CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVN----GLDSDLANLKYVGGDMFEA-----IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~ri~~~~~D~~~~-----~p-~~D~v~~~  196 (296)
                      ..++.+|||||||+|.++..+++..+..+++++|+ +.+++    .++ ...++.++.+|...+     .+ .||+|++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~-~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR-ERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH-HCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-cCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            45678999999999999999999988779999999 76543    333 345789999998763     22 49999986


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH----HHH
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT----KLF  272 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~----~ll  272 (296)
                       +.+   .++...++++++++|||   ||++++.-...+.+.                       ..+.+++.    +.+
T Consensus       134 -~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~~~~~~~~~-----------------------~~~~~~~~~~~~~~l  183 (210)
T 1nt2_A          134 -IAQ---KNQIEILKANAEFFLKE---KGEVVIMVKARSIDS-----------------------TAEPEEVFKSVLKEM  183 (210)
T ss_dssp             -CCS---TTHHHHHHHHHHHHEEE---EEEEEEEEEHHHHCT-----------------------TSCHHHHHHHHHHHH
T ss_pred             -ccC---hhHHHHHHHHHHHHhCC---CCEEEEEEecCCccc-----------------------cCCHHHHHHHHHHHH
Confidence             222   23344569999999999   999888732211000                       00223321    237


Q ss_pred             HhcCCceeEEEEcCC---cceEEEEe
Q 022515          273 TYAGFSDYKIIPILG---LRSLIEVY  295 (296)
Q Consensus       273 ~~aGf~~~~~~~~~~---~~~vi~~~  295 (296)
                      +++ |++++......   ...++.++
T Consensus       184 ~~~-f~~~~~~~~~p~~~~h~~~~~~  208 (210)
T 1nt2_A          184 EGD-FKIVKHGSLMPYHRDHIFIHAY  208 (210)
T ss_dssp             HTT-SEEEEEEECTTTCTTEEEEEEE
T ss_pred             Hhh-cEEeeeecCCCCCCCcEEEEEE
Confidence            888 99999887732   34566655

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.46  E-value=1.1e-13  Score=123.70  Aligned_cols=114  Identities=15%  Similarity=0.161  Sum_probs=92.0

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------------C-CCCeeEEec
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------------D-LANLKYVGG  181 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~-~~ri~~~~~  181 (296)
                      ...+++.+.  ..++.+|||||||+|..++.++..++..+++++|+ +.+++.|++             . .++|+|+.+
T Consensus       162 i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          162 VAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            345555555  67889999999999999999999887667999999 888776653             1 378999999


Q ss_pred             cCCC-CC----CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC
Q 022515          182 DMFE-AI----SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK  238 (296)
Q Consensus       182 D~~~-~~----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~  238 (296)
                      |+++ ++    +.+|+|+++.+++ +  ++....|+++++.|||   ||+|++.|.+.++..
T Consensus       240 D~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVssE~f~p~d~  295 (438)
T 3uwp_A          240 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSSKPFAPLNF  295 (438)
T ss_dssp             CTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEESSCSSCTTC
T ss_pred             cccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEeecccCCCC
Confidence            9998 54    3599999987764 3  3445778999999999   999999998887654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.46  E-value=2.2e-13  Score=114.42  Aligned_cols=141  Identities=9%  Similarity=0.094  Sum_probs=96.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC--C----CccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA--I----SPADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~--~----p~~D~v~~~  196 (296)
                      +.++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+.+   ...+++++.+|+.+.  .    ..||+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            5667899999999999999999986 7789999999 775544432   337899999999872  2    249999984


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC-CCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN-KKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                      ..    ..+....+++++.++|+|   ||++++ ...... ....+   . ...              -..+ .++|+++
T Consensus       155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i-~~~~~~~~~~~~---~-~~~--------------~~~~-~~~l~~~  207 (233)
T 2ipx_A          155 VA----QPDQTRIVALNAHTFLRN---GGHFVI-SIKANCIDSTAS---A-EAV--------------FASE-VKKMQQE  207 (233)
T ss_dssp             CC----CTTHHHHHHHHHHHHEEE---EEEEEE-EEEHHHHCSSSC---H-HHH--------------HHHH-HHTTGGG
T ss_pred             CC----CccHHHHHHHHHHHHcCC---CeEEEE-EEcccccccCCC---H-HHH--------------HHHH-HHHHHHC
Confidence            33    233345678999999999   888887 322110 11100   0 000              0123 5889999


Q ss_pred             CCceeEEEEcCCc---ceEEEEe
Q 022515          276 GFSDYKIIPILGL---RSLIEVY  295 (296)
Q Consensus       276 Gf~~~~~~~~~~~---~~vi~~~  295 (296)
                      ||+++++..+..+   ..++.++
T Consensus       208 Gf~~~~~~~~~~~~~~~~~v~~~  230 (233)
T 2ipx_A          208 NMKPQEQLTLEPYERDHAVVVGV  230 (233)
T ss_dssp             TEEEEEEEECTTTSSSEEEEEEE
T ss_pred             CCceEEEEecCCccCCcEEEEEE
Confidence            9999987776433   4455443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.46  E-value=3.3e-13  Score=118.48  Aligned_cols=100  Identities=16%  Similarity=0.173  Sum_probs=82.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------------CCCCeeEEeccCCC-C----C--C
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------------DLANLKYVGGDMFE-A----I--S  188 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~D~~~-~----~--p  188 (296)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++            ...+++++.+|+.+ +    +  +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            46789999999999999998884 5779999999 899988765            12379999999987 4    3  2


Q ss_pred             --ccceeEehhhhccC-C-chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 --PADAVLLKWILHDW-N-DEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 --~~D~v~~~~vlh~~-~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                        .||+|++..++|+. . .++...+|++++++|+|   ||.+++...
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~  156 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGTTP  156 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEEEE
T ss_pred             CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEecC
Confidence              59999999999987 3 35567999999999999   888887765

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.46  E-value=2.4e-13  Score=115.87  Aligned_cols=108  Identities=13%  Similarity=0.070  Sum_probs=83.4

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCC-CeeEEeccCCC----CC-C
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLA-NLKYVGGDMFE----AI-S  188 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~-ri~~~~~D~~~----~~-p  188 (296)
                      ...++..+.  ..++.+|||||||+|.++..++++  +.+++++|+ +.|++.+++ ... .+.....++..    .. .
T Consensus        34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~  109 (261)
T 3iv6_A           34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAG  109 (261)
T ss_dssp             HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTT
T ss_pred             HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCC
Confidence            345666666  677889999999999999999987  569999999 999998876 222 22222222211    11 2


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .||+|++..++|+++.++...+++++.++| |   ||++++...
T Consensus       110 ~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS~~  149 (261)
T 3iv6_A          110 HFDFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRASVK  149 (261)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEEEE
T ss_pred             CccEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEEec
Confidence            599999999999999888889999999999 9   999988754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.46  E-value=4.6e-13  Score=128.29  Aligned_cols=101  Identities=14%  Similarity=0.179  Sum_probs=86.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----------CCCCeeEEeccCCC-CCC--ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----------DLANLKYVGGDMFE-AIS--PAD  191 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~D~~~-~~p--~~D  191 (296)
                      ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.|++           ...+++|+.+|+.+ +.+  .||
T Consensus       719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD  798 (950)
T 3htx_A          719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD  798 (950)
T ss_dssp             HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence            3467899999999999999999988 5679999999 999988864           23579999999988 543  599


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +|++..++||++++....+++++++.|+|   | .++|...
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIISTP  835 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVSTP  835 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEEEC
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEEec
Confidence            99999999999998888899999999999   6 6666553

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.46  E-value=4.9e-13  Score=113.75  Aligned_cols=127  Identities=14%  Similarity=0.182  Sum_probs=100.5

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS-  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p-  188 (296)
                      ..++..+.  ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++      ..+++++..+|+.+.++ 
T Consensus        83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (255)
T 3mb5_A           83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE  160 (255)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred             HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence            34555555  667889999999999999999999 88999999999 899988876      35779999999998554 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                       .||+|++     +.++..  .+++++.++|+|   ||++++......                            ..++
T Consensus       161 ~~~D~v~~-----~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~  202 (255)
T 3mb5_A          161 ENVDHVIL-----DLPQPE--RVVEHAAKALKP---GGFFVAYTPCSN----------------------------QVMR  202 (255)
T ss_dssp             CSEEEEEE-----CSSCGG--GGHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred             CCcCEEEE-----CCCCHH--HHHHHHHHHcCC---CCEEEEEECCHH----------------------------HHHH
Confidence             4999998     345543  679999999999   899888753110                            3456


Q ss_pred             HHHHHHhcC--CceeEEEE
Q 022515          268 WTKLFTYAG--FSDYKIIP  284 (296)
Q Consensus       268 ~~~ll~~aG--f~~~~~~~  284 (296)
                      +.++++++|  |+.+++..
T Consensus       203 ~~~~l~~~g~~f~~~~~~e  221 (255)
T 3mb5_A          203 LHEKLREFKDYFMKPRTIN  221 (255)
T ss_dssp             HHHHHHHTGGGBSCCEEEC
T ss_pred             HHHHHHHcCCCccccEEEE
Confidence            778889999  88777653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.46  E-value=2.8e-13  Score=118.31  Aligned_cols=152  Identities=11%  Similarity=0.129  Sum_probs=99.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCC-------CeeEEeccCCC---------CCC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLA-------NLKYVGGDMFE---------AIS  188 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-------ri~~~~~D~~~---------~~p  188 (296)
                      ++.+|||||||+|..+..++.. ...+++++|+ +.+++.|++    ...       +++|...|+..         +.+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            4689999999999877766664 3468999999 999999886    111       26788888732         122


Q ss_pred             --ccceeEehhhhcc-CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC---chh---h---hhhhhhhh---
Q 022515          189 --PADAVLLKWILHD-WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD---KSI---E---TQLFFDML---  253 (296)
Q Consensus       189 --~~D~v~~~~vlh~-~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~---~~~---~---~~~~~~~~---  253 (296)
                        .||+|++..++|+ ++.++...+|++++++|+|   ||++++............   .+.   .   ...+..+.   
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  203 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIA  203 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccc
Confidence              5999999999987 4545567999999999999   898877665321100000   000   0   00000000   


Q ss_pred             -----hhhhcC------ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          254 -----MMVLLT------GTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       254 -----~~~~~~------g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                           .....+      -...+.+++.++++++||+++.....
T Consensus       204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f  246 (302)
T 2vdw_A          204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF  246 (302)
T ss_dssp             TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred             ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence                 000011      12347899999999999999887654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.45  E-value=5e-13  Score=113.88  Aligned_cols=127  Identities=17%  Similarity=0.254  Sum_probs=99.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC--CccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI--SPADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~--p~~D~v~~~~vlh  200 (296)
                      ..++.+|||+|||+|.++..+++..+  +++++|+ |.+++.+++    ..-.+++..+|+.+..  ..||+|++....|
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence            35678999999999999999888755  9999999 999888875    1112899999987743  3599999865443


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                           ....+++++.+.|+|   ||++++.+....                            +.+++.++++++||+++
T Consensus       196 -----~~~~~l~~~~~~Lkp---gG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~  239 (254)
T 2nxc_A          196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL  239 (254)
T ss_dssp             -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred             -----HHHHHHHHHHHHcCC---CCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEE
Confidence                 346889999999999   898888654321                            46788999999999999


Q ss_pred             EEEEcCCcceEE
Q 022515          281 KIIPILGLRSLI  292 (296)
Q Consensus       281 ~~~~~~~~~~vi  292 (296)
                      ++....+..+++
T Consensus       240 ~~~~~~~W~~l~  251 (254)
T 2nxc_A          240 EEAAEGEWVLLA  251 (254)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEeccCCeEEEE
Confidence            988877665543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.45  E-value=6e-13  Score=109.65  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=94.8

Q ss_pred             HHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---CCc
Q 022515          120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---ISP  189 (296)
Q Consensus       120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~p~  189 (296)
                      ++..+.  ..++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++      ..++++++.+|+.+.   .+.
T Consensus        47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            344444  567789999999999999999988  789999999 999988875      234899999999872   346


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWT  269 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~  269 (296)
                      ||+|++...+    +  .. +++++.+.|+|   ||++++......                            +..++.
T Consensus       123 ~D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~~~~~~----------------------------~~~~~~  164 (204)
T 3njr_A          123 PEAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVANAVTLE----------------------------SETLLT  164 (204)
T ss_dssp             CSEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEEECSHH----------------------------HHHHHH
T ss_pred             CCEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEEecCcc----------------------------cHHHHH
Confidence            9999987643    1  23 89999999999   898887553110                            456777


Q ss_pred             HHHHhcCCceeEEE
Q 022515          270 KLFTYAGFSDYKII  283 (296)
Q Consensus       270 ~ll~~aGf~~~~~~  283 (296)
                      +++++.|+++.++.
T Consensus       165 ~~l~~~g~~i~~i~  178 (204)
T 3njr_A          165 QLHARHGGQLLRID  178 (204)
T ss_dssp             HHHHHHCSEEEEEE
T ss_pred             HHHHhCCCcEEEEE
Confidence            88999998876654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.45  E-value=1.1e-13  Score=118.92  Aligned_cols=97  Identities=15%  Similarity=0.271  Sum_probs=81.2

Q ss_pred             CCCEEEEecCCchH----HHHHHHHHCC----CCeEEeccc-hhHhhccCCC--------------------------C-
Q 022515          130 GLNSLVDVGGGIGT----AAKAIAKAFP----KLECTCFDL-PHVVNGLDSD--------------------------L-  173 (296)
Q Consensus       130 ~~~~vLDvGgG~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~--------------------------~-  173 (296)
                      +..+|+|+|||||.    +++.|++.+|    +.++++.|+ +.+++.|++.                          . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    5666777655    468999999 9999888651                          1 


Q ss_pred             ---------CCeeEEeccCCC-CCC---ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          174 ---------ANLKYVGGDMFE-AIS---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       174 ---------~ri~~~~~D~~~-~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                               .+|+|..+|+.+ +++   .||+|+|.+++++++++...+++++++++|+|   ||.+++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEE
Confidence                     369999999998 454   59999999999999988888999999999999   787766

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.44  E-value=2.2e-13  Score=112.38  Aligned_cols=102  Identities=16%  Similarity=0.188  Sum_probs=85.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh  200 (296)
                      ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++   ...++++..+|+.+ +.+  .||+|++..++|
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence            356789999999999999999998654 8999999 899988876   23689999999988 554  499999999887


Q ss_pred             cCC-------------chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          201 DWN-------------DEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       201 ~~~-------------d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      ++.             .++...+|+++.++|+|   ||++++.+..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~~~~  161 (215)
T 2pxx_A          119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISMTSA  161 (215)
T ss_dssp             HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred             hhccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEEeCC
Confidence            765             34567899999999999   9999988753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.43  E-value=1.9e-13  Score=115.44  Aligned_cols=122  Identities=20%  Similarity=0.266  Sum_probs=94.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-----CccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-----SPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-----p~~D~v~~  195 (296)
                      +.+..+|||||||+|..+..++...|+.+++++|+ +.+++.+++     ...+++++.+|+.+ +.     ..||+|++
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            34678999999999999999999899999999999 889888875     23469999999876 42     24999998


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                      ..+    .+  ...+++.+.+.|+|   ||++++.....     .    .                 ...+++.+.++++
T Consensus       148 ~~~----~~--~~~~l~~~~~~Lkp---gG~l~~~~g~~-----~----~-----------------~~~~~~~~~l~~~  192 (240)
T 1xdz_A          148 RAV----AR--LSVLSELCLPLVKK---NGLFVALKAAS-----A----E-----------------EELNAGKKAITTL  192 (240)
T ss_dssp             ECC----SC--HHHHHHHHGGGEEE---EEEEEEEECC------C----H-----------------HHHHHHHHHHHHT
T ss_pred             ecc----CC--HHHHHHHHHHhcCC---CCEEEEEeCCC-----c----h-----------------HHHHHHHHHHHHc
Confidence            763    33  45889999999999   89888763210     0    0                 0235677889999


Q ss_pred             CCceeEEEE
Q 022515          276 GFSDYKIIP  284 (296)
Q Consensus       276 Gf~~~~~~~  284 (296)
                      ||++.++..
T Consensus       193 g~~~~~~~~  201 (240)
T 1xdz_A          193 GGELENIHS  201 (240)
T ss_dssp             TEEEEEEEE
T ss_pred             CCeEeEEEE
Confidence            999887764

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.43  E-value=1.5e-14  Score=123.13  Aligned_cols=144  Identities=10%  Similarity=0.010  Sum_probs=97.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCC----CCCC-----cccee
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMF----EAIS-----PADAV  193 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~----~~~p-----~~D~v  193 (296)
                      ++.+|||+|||+|.++..+++++|+.+++++|+ +.+++.|++      ..++++++.+|..    ++.+     .||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            567999999999999999999988899999999 999988876      3567999999953    2333     49999


Q ss_pred             EehhhhccCCc-------------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhh-hhhhhcC
Q 022515          194 LLKWILHDWND-------------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDM-LMMVLLT  259 (296)
Q Consensus       194 ~~~~vlh~~~d-------------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  259 (296)
                      ++.-..|....             +....++++++++|+|   ||++.+++.+....         ...... .+.....
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~~~~~~~~---------~~~l~~~g~~~~~~  212 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFVKRIIHDS---------LQLKKRLRWYSCML  212 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHH---HTHHHHHHHHHHHH---------HHHGGGBSCEEEEE
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEEHHHHHHH---------HhcccceEEEEECC
Confidence            99755553331             1123567889999999   99888776433210         001100 0111112


Q ss_pred             ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      +...+.+++.++++++||+.+++...
T Consensus       213 ~~~~~~~~~~~~l~~~Gf~~v~~~~~  238 (254)
T 2h00_A          213 GKKCSLAPLKEELRIQGVPKVTYTEF  238 (254)
T ss_dssp             SSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CChhHHHHHHHHHHHcCCCceEEEEE
Confidence            34445689999999999999887765

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.43  E-value=9e-13  Score=110.29  Aligned_cols=130  Identities=17%  Similarity=0.138  Sum_probs=97.0

Q ss_pred             cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCC--CCCC--ccceeEehh
Q 022515          128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMF--EAIS--PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~--~~~p--~~D~v~~~~  197 (296)
                      ..++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.|++    ...+++++.+|..  .+.+  .||+|++.-
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            4567899999999 999999999987 789999999 999988876    2338999999963  3443  599999876


Q ss_pred             hhccCCchH-----------------HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCc
Q 022515          198 ILHDWNDEE-----------------CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTG  260 (296)
Q Consensus       198 vlh~~~d~~-----------------~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  260 (296)
                      ..|..++..                 ...+++++.+.|+|   ||++++.-....                         
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~~~~-------------------------  183 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALYLPDKE-------------------------  183 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEEEESCH-------------------------
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEEecccH-------------------------
Confidence            665443321                 26789999999999   899888632110                         


Q ss_pred             cccCHHHHHHHHHhcCCceeEEEEcCCc
Q 022515          261 TERDEKEWTKLFTYAGFSDYKIIPILGL  288 (296)
Q Consensus       261 ~~rt~~e~~~ll~~aGf~~~~~~~~~~~  288 (296)
                        ...+++.++++++||++..+....+.
T Consensus       184 --~~~~~~~~~l~~~g~~~~~~~~~~g~  209 (230)
T 3evz_A          184 --KLLNVIKERGIKLGYSVKDIKFKVGT  209 (230)
T ss_dssp             --HHHHHHHHHHHHTTCEEEEEEECCCC
T ss_pred             --hHHHHHHHHHHHcCCceEEEEecCCC
Confidence              04567889999999987776655443

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.43  E-value=4.3e-13  Score=117.31  Aligned_cols=130  Identities=12%  Similarity=0.119  Sum_probs=96.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC-C---CC-cccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE-A---IS-PADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~-~---~p-~~D~v  193 (296)
                      .++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ .        ..|++++.+|..+ .   .+ .||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4568999999999999999998877889999999 999988875 2        4789999999876 2   12 49999


Q ss_pred             EehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHH
Q 022515          194 LLKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKL  271 (296)
Q Consensus       194 ~~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~l  271 (296)
                      ++....+.++....  .+++++++++|+|   ||.+++....        +      +..          .....++.+.
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~~~--------~------~~~----------~~~~~~~~~~  226 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQGES--------I------WLD----------LELIEKMSRF  226 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEE---EEEEEEEECC--------T------TTC----------HHHHHHHHHH
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEecCC--------c------ccc----------hHHHHHHHHH
Confidence            99777666554432  5889999999999   8888776321        0      000          1145788899


Q ss_pred             HHhcCCceeEEEEc
Q 022515          272 FTYAGFSDYKIIPI  285 (296)
Q Consensus       272 l~~aGf~~~~~~~~  285 (296)
                      ++++||..++++..
T Consensus       227 l~~~GF~~v~~~~~  240 (304)
T 3bwc_A          227 IRETGFASVQYALM  240 (304)
T ss_dssp             HHHHTCSEEEEEEC
T ss_pred             HHhCCCCcEEEEEe
Confidence            99999998887754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.43  E-value=1.9e-12  Score=108.11  Aligned_cols=142  Identities=13%  Similarity=0.120  Sum_probs=98.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC-----CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA-----IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~-----~p-~~D~v~~~  196 (296)
                      +.++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+++   ...+++++.+|+.+.     .+ .||+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            4567899999999999999999885 6689999999 876665543   347899999999872     22 49999975


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                      ..    .......+++++++.|+|   ||++++. .........++  .               .....+++.++ .++ 
T Consensus       151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~--~---------------~~~~~~~l~~l-~~~-  203 (227)
T 1g8a_A          151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTKE--P---------------EQVFREVEREL-SEY-  203 (227)
T ss_dssp             CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTSC--H---------------HHHHHHHHHHH-HTT-
T ss_pred             CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCCC--h---------------hhhhHHHHHHH-Hhh-
Confidence            33    222334559999999999   8998887 32221111100  0               01145677777 777 


Q ss_pred             CceeEEEEcCCc---ceEEEEeC
Q 022515          277 FSDYKIIPILGL---RSLIEVYP  296 (296)
Q Consensus       277 f~~~~~~~~~~~---~~vi~~~~  296 (296)
                      |++++...+...   ..++.+++
T Consensus       204 f~~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          204 FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             ceeeeEeccCcccCCCEEEEEEe
Confidence            999988887544   55665543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.43  E-value=1.1e-12  Score=108.81  Aligned_cols=98  Identities=19%  Similarity=0.291  Sum_probs=79.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC--ccceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS--PADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p--~~D~v~~~~v  198 (296)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ..++++++.+|+.+ +  ++  .||+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            467999999999999999999999999999999 999988875     24789999999987 3  43  4999998754


Q ss_pred             hccCCch-------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          199 LHDWNDE-------ECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       199 lh~~~d~-------~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .+ |+..       ....+++++.++|+|   ||.+++..
T Consensus       121 ~~-~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~  156 (214)
T 1yzh_A          121 DP-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT  156 (214)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred             CC-ccccchhhhccCCHHHHHHHHHHcCC---CcEEEEEe
Confidence            32 2211       124789999999999   89887753

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.43  E-value=1.6e-12  Score=111.00  Aligned_cols=125  Identities=9%  Similarity=0.066  Sum_probs=96.0

Q ss_pred             cC-CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C--CC--ccceeE
Q 022515          128 FE-GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A--IS--PADAVL  194 (296)
Q Consensus       128 ~~-~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~--~p--~~D~v~  194 (296)
                      .. ++.+|||+|||+|.++..++++.+. +++++|+ +.+++.|++      ..+|++++.+|+.+ .  .+  .||+|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            45 6789999999999999999998765 9999999 999988876      45689999999988 3  22  499999


Q ss_pred             ehhhhccC------------------CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515          195 LKWILHDW------------------NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV  256 (296)
Q Consensus       195 ~~~vlh~~------------------~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  256 (296)
                      ++-..+..                  .......+++.+.+.|+|   ||+++++.   +..                   
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~---~~~-------------------  179 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFVH---RPE-------------------  179 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEEE---CTT-------------------
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEEE---cHH-------------------
Confidence            95332211                  113345799999999999   89888842   110                   


Q ss_pred             hcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          257 LLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                             ...++.+.+++.||...++.++
T Consensus       180 -------~~~~~~~~l~~~~~~~~~~~~v  201 (259)
T 3lpm_A          180 -------RLLDIIDIMRKYRLEPKRIQFV  201 (259)
T ss_dssp             -------THHHHHHHHHHTTEEEEEEEEE
T ss_pred             -------HHHHHHHHHHHCCCceEEEEEe
Confidence                   4567788899999998887765

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.43  E-value=6e-14  Score=118.17  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=79.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC---CCC--ccceeEe-hh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE---AIS--PADAVLL-KW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~---~~p--~~D~v~~-~~  197 (296)
                      .++.+|||||||+|.++..+++..+ .+++++|+ +.+++.|++    ...+++++.+|+.+   +++  .||+|++ .+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4567999999999999999966433 48999999 999988876    34789999999876   343  4999998 55


Q ss_pred             h--hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          198 I--LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       198 v--lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      .  .+++.......++++++++|||   ||++++++..
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~~~~  172 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKP---GGVLTYCNLT  172 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEE---EEEEEECCHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCC---CeEEEEEecC
Confidence            4  3444444455789999999999   9998887643

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.42  E-value=8.1e-13  Score=106.86  Aligned_cols=121  Identities=20%  Similarity=0.255  Sum_probs=94.4

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC---C
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI---S  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~---p  188 (296)
                      .++..+.  ..++.+|||+|||+|.++..+++..  .+++++|+ +.+++.+++      ..+++++..+|+.+..   +
T Consensus        24 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   99 (192)
T 1l3i_A           24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP   99 (192)
T ss_dssp             HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred             HHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence            3344444  5677899999999999999999886  79999999 889888875      2368999999987622   4


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      .||+|++..++|+     ...+++++.+.|+|   ||++++.....          .                  +..++
T Consensus       100 ~~D~v~~~~~~~~-----~~~~l~~~~~~l~~---gG~l~~~~~~~----------~------------------~~~~~  143 (192)
T 1l3i_A          100 DIDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTAILL----------E------------------TKFEA  143 (192)
T ss_dssp             CEEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEECBH----------H------------------HHHHH
T ss_pred             CCCEEEECCchHH-----HHHHHHHHHHhcCC---CcEEEEEecCc----------c------------------hHHHH
Confidence            6999999887764     35789999999999   88888765311          0                  34677


Q ss_pred             HHHHHhcCCce
Q 022515          269 TKLFTYAGFSD  279 (296)
Q Consensus       269 ~~ll~~aGf~~  279 (296)
                      .+++++.||.+
T Consensus       144 ~~~l~~~g~~~  154 (192)
T 1l3i_A          144 MECLRDLGFDV  154 (192)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHHCCCce
Confidence            88999999953

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.42  E-value=4.6e-13  Score=115.41  Aligned_cols=96  Identities=10%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCCccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AISPADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh  200 (296)
                      ..++.+|||||||+|.++..++.+.++.+++++|+ |++++.|++     ..++++|+.+|..+ +...||+|++...  
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~--  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL--  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence            67889999999999988877777778999999999 999999886     23899999999988 4346999998654  


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       .++  ..++++++++.|+|   ||++++.+
T Consensus       198 -~~d--~~~~l~el~r~LkP---GG~Lvv~~  222 (298)
T 3fpf_A          198 -AEP--KRRVFRNIHRYVDT---ETRIIYRT  222 (298)
T ss_dssp             -CSC--HHHHHHHHHHHCCT---TCEEEEEE
T ss_pred             -ccC--HHHHHHHHHHHcCC---CcEEEEEc
Confidence             233  35889999999999   99999876

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.41  E-value=1.2e-12  Score=108.81  Aligned_cols=130  Identities=9%  Similarity=0.032  Sum_probs=102.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC---ccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS---PADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p---~~D~v~~~~v  198 (296)
                      +++.+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++      ..++|++..+|.+++++   .||+|++..+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            4567999999999999999999999999999999 999988876      46789999999998554   4999987654


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                          ..+-...+|..+.+.|+|   +|++++ ....                             ..+.++++|.+.||.
T Consensus        94 ----Gg~~i~~Il~~~~~~L~~---~~~lVl-q~~~-----------------------------~~~~vr~~L~~~Gf~  136 (225)
T 3kr9_A           94 ----GGRLIARILEEGLGKLAN---VERLIL-QPNN-----------------------------REDDLRIWLQDHGFQ  136 (225)
T ss_dssp             ----CHHHHHHHHHHTGGGCTT---CCEEEE-EESS-----------------------------CHHHHHHHHHHTTEE
T ss_pred             ----ChHHHHHHHHHHHHHhCC---CCEEEE-ECCC-----------------------------CHHHHHHHHHHCCCE
Confidence                233456899999999998   777665 3210                             456788999999999


Q ss_pred             eeEEEEc---CCcceEEEEe
Q 022515          279 DYKIIPI---LGLRSLIEVY  295 (296)
Q Consensus       279 ~~~~~~~---~~~~~vi~~~  295 (296)
                      +++-.-+   +-++.+|.+.
T Consensus       137 i~~e~lv~e~~~~Yeii~~~  156 (225)
T 3kr9_A          137 IVAESILEEAGKFYEILVVE  156 (225)
T ss_dssp             EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEEEE
Confidence            8876533   3346676654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.41  E-value=4.3e-13  Score=108.39  Aligned_cols=134  Identities=13%  Similarity=0.166  Sum_probs=92.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C-C-C-ccceeEeh-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A-I-S-PADAVLLK-  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~-~-p-~~D~v~~~-  196 (296)
                      +.++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ..++++++.+|... + . + .||+|++. 
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            456789999999999999999987  789999999 999998876     23789999977665 1 2 3 49999876 


Q ss_pred             hhhccC------CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          197 WILHDW------NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       197 ~vlh~~------~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      ..+++.      ..+....+|+++.+.|+|   ||++++......+....    .                .....+|.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~----~----------------~~~~~~~~~  154 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIMIYYGHDGGDM----E----------------KDAVLEYVI  154 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEE---EEEEEEEEC------CH----H----------------HHHHHHHHH
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEEEeCCCCCCHH----H----------------HHHHHHHHH
Confidence            333220      224456889999999999   99998876543221110    0                002345566


Q ss_pred             HHHhcCCceeEEEEcC
Q 022515          271 LFTYAGFSDYKIIPIL  286 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~  286 (296)
                      .+...+|++.....+.
T Consensus       155 ~l~~~~~~~~~~~~~~  170 (185)
T 3mti_A          155 GLDQRVFTAMLYQPLN  170 (185)
T ss_dssp             HSCTTTEEEEEEEESS
T ss_pred             hCCCceEEEEEehhhc
Confidence            6667788888877663

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.40  E-value=7e-13  Score=108.27  Aligned_cols=136  Identities=15%  Similarity=0.141  Sum_probs=97.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C-CC--ccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A-IS--PADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~-~p--~~D~v~~  195 (296)
                      ..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++      ..++++++.+|+.+ + ..  .||+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            4567899999999999999999986 6789999999 999998876      24789999999876 2 22  4999998


Q ss_pred             hhhhcc-------CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          196 KWILHD-------WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       196 ~~vlh~-------~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      ...+..       ...+...++++++.+.|+|   ||++++...........    .                .....+|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~~~~~~~~~~~----~----------------~~~~~~~  156 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVVIYYGGDTGFE----E----------------KEKVLEF  156 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEEECCBTTTBSH----H----------------HHHHHHH
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEEEccCCCCcHH----H----------------HHHHHHH
Confidence            764411       1122445799999999999   89998887543222110    0                0022344


Q ss_pred             HHHHHhcCCceeEEEEcC
Q 022515          269 TKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~~~  286 (296)
                      .+.+...+|++.....+.
T Consensus       157 ~~~l~~~~~~v~~~~~~~  174 (197)
T 3eey_A          157 LKGVDQKKFIVQRTDFIN  174 (197)
T ss_dssp             HTTSCTTTEEEEEEEETT
T ss_pred             HHhCCCCcEEEEEEEecc
Confidence            444556778887776653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.40  E-value=3.1e-13  Score=114.82  Aligned_cols=122  Identities=14%  Similarity=0.125  Sum_probs=95.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-----CccceeEeh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-----SPADAVLLK  196 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-----p~~D~v~~~  196 (296)
                      .++.+|||||||+|..++.++..+|+.+++++|+ +.+++.+++     ...+++++.+|+.+ +.     ..||+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            4578999999999999999999999999999999 899988876     34469999999876 32     359999996


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                      .+    .+  ...+++.+.+.|+|   ||++++.......        .                  ...++...++..|
T Consensus       159 a~----~~--~~~ll~~~~~~Lkp---gG~l~~~~g~~~~--------~------------------e~~~~~~~l~~~G  203 (249)
T 3g89_A          159 AV----AP--LCVLSELLLPFLEV---GGAAVAMKGPRVE--------E------------------ELAPLPPALERLG  203 (249)
T ss_dssp             SS----CC--HHHHHHHHGGGEEE---EEEEEEEECSCCH--------H------------------HHTTHHHHHHHHT
T ss_pred             Cc----CC--HHHHHHHHHHHcCC---CeEEEEEeCCCcH--------H------------------HHHHHHHHHHHcC
Confidence            54    22  34789999999999   9998876531100        0                  2335667788899


Q ss_pred             CceeEEEEc
Q 022515          277 FSDYKIIPI  285 (296)
Q Consensus       277 f~~~~~~~~  285 (296)
                      |+..++.++
T Consensus       204 ~~~~~~~~~  212 (249)
T 3g89_A          204 GRLGEVLAL  212 (249)
T ss_dssp             EEEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            998887765

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.39  E-value=2.2e-12  Score=107.40  Aligned_cols=130  Identities=9%  Similarity=-0.042  Sum_probs=102.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-C--ccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-S--PADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-p--~~D~v~~~~v  198 (296)
                      +++.+|+|||||+|.+++.+++..|..+++++|+ |.+++.|++      ..++|++..+|.++.. +  .||+|++..+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            4668999999999999999999988889999999 999998876      5679999999999843 3  4999987654


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                      .    .+-...+|....+.|++   +|++++.- ..                             ..++++++|.+.||.
T Consensus       100 G----g~lI~~IL~~~~~~l~~---~~~lIlqp-~~-----------------------------~~~~lr~~L~~~Gf~  142 (230)
T 3lec_A          100 G----GRLIADILNNDIDKLQH---VKTLVLQP-NN-----------------------------REDDLRKWLAANDFE  142 (230)
T ss_dssp             C----HHHHHHHHHHTGGGGTT---CCEEEEEE-SS-----------------------------CHHHHHHHHHHTTEE
T ss_pred             c----hHHHHHHHHHHHHHhCc---CCEEEEEC-CC-----------------------------ChHHHHHHHHHCCCE
Confidence            3    34466899999999998   77665532 10                             356889999999999


Q ss_pred             eeEEEEc---CCcceEEEEe
Q 022515          279 DYKIIPI---LGLRSLIEVY  295 (296)
Q Consensus       279 ~~~~~~~---~~~~~vi~~~  295 (296)
                      +++-.-+   +-++.+|.+.
T Consensus       143 i~~E~lv~e~~~~Yeii~~~  162 (230)
T 3lec_A          143 IVAEDILTENDKRYEILVVK  162 (230)
T ss_dssp             EEEEEEEEC--CEEEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEEEE
Confidence            8876544   3356777764

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.39  E-value=1.1e-12  Score=105.18  Aligned_cols=110  Identities=9%  Similarity=0.074  Sum_probs=86.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CC---C--ccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AI---S--PADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~---p--~~D~v~~~~vl  199 (296)
                      ..++.+|||||||.                +.+|+ +.|++.|++ ...++++..+|+.+ +.   +  .||+|++.+++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            56789999999996                34899 899998876 44569999999987 44   4  39999999999


Q ss_pred             ccC-CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515          200 HDW-NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF  277 (296)
Q Consensus       200 h~~-~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf  277 (296)
                      |++ ++.  .++|++++++|||   ||++++.+........                   ....++.++|.++|+++||
T Consensus        74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           74 GSTTLHS--AEILAEIARILRP---GGCLFLKEPVETAVDN-------------------NSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             TCCCCCC--HHHHHHHHHHEEE---EEEEEEEEEEESSSCS-------------------SSSSCCHHHHHHHHHHTTC
T ss_pred             hhcccCH--HHHHHHHHHHCCC---CEEEEEEccccccccc-------------------ccccCCHHHHHHHHHHCCC
Confidence            998 665  4789999999999   9999996654322110                   1123488999999999999

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.39  E-value=2.1e-13  Score=114.07  Aligned_cols=115  Identities=10%  Similarity=0.163  Sum_probs=90.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC--CCC---ccceeEehhhhccC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE--AIS---PADAVLLKWILHDW  202 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~--~~p---~~D~v~~~~vlh~~  202 (296)
                      .++.+|||||||+|.++..+++.  +.+++++|+ +.+++.+++...+++++.+|+.+  +.+   .||+|++.      
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence            46689999999999999999998  679999999 99999887656689999999965  443   49999987      


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEE
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~  282 (296)
                      .+  ...+|++++++|+|   ||+++..                             +...+.+++.++++++||+...+
T Consensus       119 ~~--~~~~l~~~~~~Lkp---gG~l~~~-----------------------------~~~~~~~~~~~~l~~~Gf~~~~~  164 (226)
T 3m33_A          119 RG--PTSVILRLPELAAP---DAHFLYV-----------------------------GPRLNVPEVPERLAAVGWDIVAE  164 (226)
T ss_dssp             SC--CSGGGGGHHHHEEE---EEEEEEE-----------------------------ESSSCCTHHHHHHHHTTCEEEEE
T ss_pred             CC--HHHHHHHHHHHcCC---CcEEEEe-----------------------------CCcCCHHHHHHHHHHCCCeEEEE
Confidence            12  23679999999999   8887710                             00114557888999999988776


Q ss_pred             EEc
Q 022515          283 IPI  285 (296)
Q Consensus       283 ~~~  285 (296)
                      ...
T Consensus       165 ~~~  167 (226)
T 3m33_A          165 DHV  167 (226)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.38  E-value=8.3e-13  Score=105.88  Aligned_cols=97  Identities=15%  Similarity=0.145  Sum_probs=77.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~v  198 (296)
                      +.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++      ...++++  .|... ..+ .||+|++..+
T Consensus        47 l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           47 IKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             SCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            35678999999999999999999999999999999 999998876      2235666  66665 333 4999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +|+. ++. ...+.++.++|+|   ||.++-.+
T Consensus       125 LHlL-~~~-~~al~~v~~~L~p---ggvfISfp  152 (200)
T 3fzg_A          125 LPVL-KQQ-DVNILDFLQLFHT---QNFVISFP  152 (200)
T ss_dssp             HHHH-HHT-TCCHHHHHHTCEE---EEEEEEEE
T ss_pred             HHhh-hhh-HHHHHHHHHHhCC---CCEEEEeC
Confidence            9999 332 3556699999999   55554444

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.38  E-value=2.2e-12  Score=106.92  Aligned_cols=98  Identities=20%  Similarity=0.294  Sum_probs=77.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC--ccceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS--PADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p--~~D~v~~~~v  198 (296)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ...+++++.+|+.+ +  ++  .+|.|++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            457899999999999999999999999999999 899988765     34679999999887 3  33  4898887543


Q ss_pred             hccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          199 LHDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       199 lh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .. |+...       ...+|+++.++|+|   ||.+++..
T Consensus       118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~t  153 (213)
T 2fca_A          118 DP-WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT  153 (213)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred             CC-CcCccccccccCcHHHHHHHHHHcCC---CCEEEEEe
Confidence            22 22110       24789999999999   89888754

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.38  E-value=9.6e-13  Score=108.23  Aligned_cols=93  Identities=20%  Similarity=0.270  Sum_probs=76.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC--CccceeEehhhhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI--SPADAVLLKWILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~--p~~D~v~~~~vlh~  201 (296)
                      +..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++     ...++++..+|+.+..  ..||+|++..+   
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~---  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF---  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence            367999999999999999999999999999999 899888765     2345999999998833  35999997542   


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       .+  ...+++++.+.|+|   ||.+++..
T Consensus       142 -~~--~~~~l~~~~~~L~~---gG~l~~~~  165 (207)
T 1jsx_A          142 -AS--LNDMVSWCHHLPGE---QGRFYALK  165 (207)
T ss_dssp             -SS--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred             -CC--HHHHHHHHHHhcCC---CcEEEEEe
Confidence             22  34789999999999   88888763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.38  E-value=5.3e-13  Score=118.73  Aligned_cols=111  Identities=17%  Similarity=0.279  Sum_probs=90.2

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC-cc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS-PA  190 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p-~~  190 (296)
                      ...+++.++  .....+|||||||+|.++..+++.+|..+++++|+ +.+++.+++    ...++++..+|+.+..+ .|
T Consensus       185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f  262 (343)
T 2pjd_A          185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF  262 (343)
T ss_dssp             HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred             HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence            345566664  33467999999999999999999999999999999 888988876    33446788999987433 59


Q ss_pred             ceeEehhhhcc---CCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          191 DAVLLKWILHD---WNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       191 D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      |+|+++.++|+   +..+...+++++++++|+|   ||+++++..
T Consensus       263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~~~  304 (343)
T 2pjd_A          263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIVAN  304 (343)
T ss_dssp             EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEEEE
T ss_pred             eEEEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEEEc
Confidence            99999999986   2455567999999999999   999998764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.37  E-value=1.4e-12  Score=117.20  Aligned_cols=108  Identities=15%  Similarity=0.249  Sum_probs=87.1

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC--CCeeEEeccCCCCCC-
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL--ANLKYVGGDMFEAIS-  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~ri~~~~~D~~~~~p-  188 (296)
                      .+++.++  .....+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++      ..  .+++|..+|++++.+ 
T Consensus       213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~  290 (375)
T 4dcm_A          213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  290 (375)
T ss_dssp             HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred             HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence            4566665  44558999999999999999999999999999999 899988876      11  268889999998654 


Q ss_pred             -ccceeEehhhhcc---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          189 -PADAVLLKWILHD---WNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       189 -~~D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       .||+|++.-.+|+   ..+....++++++.+.|+|   ||+++++.
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv~  334 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIVA  334 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEEE
Confidence             5999999888875   3445556899999999999   89988864

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.37  E-value=1.9e-12  Score=110.03  Aligned_cols=126  Identities=17%  Similarity=0.186  Sum_probs=98.6

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC----C--CCCeeEEeccCCC-CCC-
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS----D--LANLKYVGGDMFE-AIS-  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~D~~~-~~p-  188 (296)
                      .++..++  ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++    .  .+++++..+|+.+ +++ 
T Consensus        87 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           87 AMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred             HHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence            4555555  677889999999999999999998 67899999999 999988875    1  3789999999988 355 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                       .||+|++     ++++..  .+|+++.++|+|   ||++++.+....                            ...+
T Consensus       165 ~~~D~v~~-----~~~~~~--~~l~~~~~~L~~---gG~l~~~~~~~~----------------------------~~~~  206 (258)
T 2pwy_A          165 AAYDGVAL-----DLMEPW--KVLEKAALALKP---DRFLVAYLPNIT----------------------------QVLE  206 (258)
T ss_dssp             TCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESCHH----------------------------HHHH
T ss_pred             CCcCEEEE-----CCcCHH--HHHHHHHHhCCC---CCEEEEEeCCHH----------------------------HHHH
Confidence             4999998     345543  679999999999   999998773210                            2345


Q ss_pred             HHHHHHhcCCceeEEEE
Q 022515          268 WTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~  284 (296)
                      +.+.++++||+.+++..
T Consensus       207 ~~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          207 LVRAAEAHPFRLERVLE  223 (258)
T ss_dssp             HHHHHTTTTEEEEEEEE
T ss_pred             HHHHHHHCCCceEEEEE
Confidence            66778888998766544

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.36  E-value=2.5e-12  Score=103.26  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=93.6

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--cc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PA  190 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~  190 (296)
                      .++..+.  ..++.+|||+|||+|.++..+++  +..+++++|+ +.+++.+++     ..+++++..+|+.++.+  .|
T Consensus        26 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~  101 (183)
T 2yxd_A           26 VSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF  101 (183)
T ss_dssp             HHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred             HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence            3444444  55678999999999999999988  7889999999 899988876     23689999999987444  59


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++..+      .....+++++++.  |   ||++++......                            +..++.+
T Consensus       102 D~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~~~~~~----------------------------~~~~~~~  142 (183)
T 2yxd_A          102 NKAFIGGT------KNIEKIIEILDKK--K---INHIVANTIVLE----------------------------NAAKIIN  142 (183)
T ss_dssp             SEEEECSC------SCHHHHHHHHHHT--T---CCEEEEEESCHH----------------------------HHHHHHH
T ss_pred             cEEEECCc------ccHHHHHHHHhhC--C---CCEEEEEecccc----------------------------cHHHHHH
Confidence            99999887      2335788998888  7   899888763110                            3456788


Q ss_pred             HHHhcCCceeEE
Q 022515          271 LFTYAGFSDYKI  282 (296)
Q Consensus       271 ll~~aGf~~~~~  282 (296)
                      .++++||.+..+
T Consensus       143 ~l~~~g~~~~~~  154 (183)
T 2yxd_A          143 EFESRGYNVDAV  154 (183)
T ss_dssp             HHHHTTCEEEEE
T ss_pred             HHHHcCCeEEEE
Confidence            999999876554

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.36  E-value=9.7e-12  Score=104.04  Aligned_cols=151  Identities=13%  Similarity=0.109  Sum_probs=97.5

Q ss_pred             HHHHHhccc-ccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhh----ccCCCCCCeeEEeccCCCCC---
Q 022515          118 SVMIHKCKD-VFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVN----GLDSDLANLKYVGGDMFEAI---  187 (296)
Q Consensus       118 ~~~~~~~~~-~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~----~a~~~~~ri~~~~~D~~~~~---  187 (296)
                      ..++..++. .+.++.+|||+|||+|..+..+++. .|..+++++|+ +.+++    .++ ...++.++.+|...+.   
T Consensus        63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~-~r~nv~~i~~Da~~~~~~~  141 (232)
T 3id6_C           63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ-RRPNIFPLLADARFPQSYK  141 (232)
T ss_dssp             HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH-HCTTEEEEECCTTCGGGTT
T ss_pred             HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh-hcCCeEEEEcccccchhhh
Confidence            344444431 2567899999999999999999986 46789999999 87643    333 3468999999987621   


Q ss_pred             ---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515          188 ---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD  264 (296)
Q Consensus       188 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt  264 (296)
                         ..||+|++....   ++ +...+++.+++.|||   ||++++.......+...+                   .+..
T Consensus       142 ~~~~~~D~I~~d~a~---~~-~~~il~~~~~~~Lkp---GG~lvisik~~~~d~t~~-------------------~~e~  195 (232)
T 3id6_C          142 SVVENVDVLYVDIAQ---PD-QTDIAIYNAKFFLKV---NGDMLLVIKARSIDVTKD-------------------PKEI  195 (232)
T ss_dssp             TTCCCEEEEEECCCC---TT-HHHHHHHHHHHHEEE---EEEEEEEEC-------CC-------------------SSSS
T ss_pred             ccccceEEEEecCCC---hh-HHHHHHHHHHHhCCC---CeEEEEEEccCCcccCCC-------------------HHHH
Confidence               259999886432   22 223345566679999   999988742221111110                   0001


Q ss_pred             HHHHHHHHHhcCCceeEEEEcCCc---ceEEEEe
Q 022515          265 EKEWTKLFTYAGFSDYKIIPILGL---RSLIEVY  295 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~~~~~---~~vi~~~  295 (296)
                      .++..+.|+++||++.+...+..+   ..++.++
T Consensus       196 ~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~  229 (232)
T 3id6_C          196 YKTEVEKLENSNFETIQIINLDPYDKDHAIVLSK  229 (232)
T ss_dssp             TTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred             HHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence            234456778899999998887433   5555554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.35  E-value=2.9e-12  Score=110.42  Aligned_cols=127  Identities=18%  Similarity=0.220  Sum_probs=97.7

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS-  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p-  188 (296)
                      ..++..++  ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++      ..+++++..+|+.+.++ 
T Consensus       102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  179 (277)
T 1o54_A          102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  179 (277)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence            34555555  667889999999999999999999 68899999999 999988875      23689999999988544 


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                       .||+|++     +.++.  ..+|+++.++|+|   ||++++.+....                            ...+
T Consensus       180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~~~~~~----------------------------~~~~  221 (277)
T 1o54_A          180 KDVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATVCPTTN----------------------------QVQE  221 (277)
T ss_dssp             CSEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEEESSHH----------------------------HHHH
T ss_pred             CccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeCCHH----------------------------HHHH
Confidence             4999998     34544  3789999999999   898888763110                            2345


Q ss_pred             HHHHHHhcCCceeEEEE
Q 022515          268 WTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~  284 (296)
                      +.+.++++||+.+++..
T Consensus       222 ~~~~l~~~gf~~~~~~~  238 (277)
T 1o54_A          222 TLKKLQELPFIRIEVWE  238 (277)
T ss_dssp             HHHHHHHSSEEEEEEEC
T ss_pred             HHHHHHHCCCceeEEEE
Confidence            56677788888766544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.34  E-value=6.8e-12  Score=108.27  Aligned_cols=122  Identities=14%  Similarity=0.089  Sum_probs=95.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~v  198 (296)
                      ..++.+|||+|||+|.++..+++..+. +++++|+ |.+++.|++      ..++++++.+|+.+ ..+ .||+|++...
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p  201 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence            345789999999999999999999766 8999999 999988875      45679999999998 333 5999988432


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                           . ....+++++.++|+|   ||.+++.+........                      ....+++.+.++++||+
T Consensus       202 -----~-~~~~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~G~~  250 (278)
T 2frn_A          202 -----V-RTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD  250 (278)
T ss_dssp             -----S-SGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred             -----h-hHHHHHHHHHHHCCC---CeEEEEEEeecccccc----------------------ccHHHHHHHHHHHcCCe
Confidence                 1 224689999999999   8988888765422110                      11567888999999998


Q ss_pred             eeE
Q 022515          279 DYK  281 (296)
Q Consensus       279 ~~~  281 (296)
                      ...
T Consensus       251 ~~~  253 (278)
T 2frn_A          251 VEK  253 (278)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            766

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.33  E-value=6.8e-12  Score=105.31  Aligned_cols=130  Identities=8%  Similarity=0.000  Sum_probs=101.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-C--ccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-S--PADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-p--~~D~v~~~~v  198 (296)
                      +++.+|||||||+|.+++.+++..|..+++++|+ |.+++.|++      ..++|++..+|.++.+ +  .||+|++..+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            4668999999999999999999988889999999 999988876      4678999999999843 3  3999987654


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                      .    .+-...+|....+.|++   ++++++.-. .                             ..++++++|.+.||.
T Consensus       100 G----g~lI~~IL~~~~~~L~~---~~~lIlq~~-~-----------------------------~~~~lr~~L~~~Gf~  142 (244)
T 3gnl_A          100 G----GTLIRTILEEGAAKLAG---VTKLILQPN-I-----------------------------AAWQLREWSEQNNWL  142 (244)
T ss_dssp             C----HHHHHHHHHHTGGGGTT---CCEEEEEES-S-----------------------------CHHHHHHHHHHHTEE
T ss_pred             c----hHHHHHHHHHHHHHhCC---CCEEEEEcC-C-----------------------------ChHHHHHHHHHCCCE
Confidence            3    34456899999999998   677665421 0                             356788999999999


Q ss_pred             eeEEEEc---CCcceEEEEe
Q 022515          279 DYKIIPI---LGLRSLIEVY  295 (296)
Q Consensus       279 ~~~~~~~---~~~~~vi~~~  295 (296)
                      +++-.-+   +-++.+|.+.
T Consensus       143 i~~E~lv~e~~k~Yeii~~~  162 (244)
T 3gnl_A          143 ITSEAILREDNKVYEIMVLA  162 (244)
T ss_dssp             EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEECCEEEEEEEEE
Confidence            8664433   3345666654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.33  E-value=8.6e-12  Score=106.58  Aligned_cols=100  Identities=17%  Similarity=0.232  Sum_probs=78.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCCC--------CC-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFEA--------IS-  188 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~~--------~p-  188 (296)
                      ..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.|++ .        .+|++++.+|+.+.        ++ 
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            45667999999999999999999999999999999 899888765 1        23799999999874        22 


Q ss_pred             -ccceeEehhhh----------------ccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          189 -PADAVLLKWIL----------------HDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       189 -~~D~v~~~~vl----------------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                       .||+|+++-..                ++........+++.+.+.|+|   ||+++++
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~  169 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI  169 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence             49999996221                222223356889999999999   8988874

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.32  E-value=5.2e-12  Score=114.76  Aligned_cols=112  Identities=18%  Similarity=0.289  Sum_probs=87.6

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhcc-------CC-----C--CCCeeEEecc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGL-------DS-----D--LANLKYVGGD  182 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~-----~--~~ri~~~~~D  182 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.|       ++     .  .++++++.+|
T Consensus       232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            34555555  66788999999999999999999888789999999 8887777       43     1  3789999875


Q ss_pred             CC-CC------CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515          183 MF-EA------ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK  237 (296)
Q Consensus       183 ~~-~~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~  237 (296)
                      .+ .+      ...||+|++.++++  . ++....|+++.+.|+|   ||++++.+.+.+..
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~d~f~p~~  365 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISLKSLRSLT  365 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEESSCSSCTT
T ss_pred             ccccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEeeccCCcc
Confidence            44 32      23599999987773  2 3445789999999999   99999998776654

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.32  E-value=2.5e-12  Score=119.05  Aligned_cols=106  Identities=11%  Similarity=0.102  Sum_probs=87.2

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-c
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-P  189 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~  189 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++ .+..+++++|+.++++.|++      ..++++++.+|+.+ +.+ .
T Consensus       148 ~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~  224 (480)
T 3b3j_A          148 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  224 (480)
T ss_dssp             HHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence            44555554  45678999999999999998877 57789999999448777765      34899999999998 665 5


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ||+|++..++|++.+++....+.++++.|+|   ||++++
T Consensus       225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~  261 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFP  261 (480)
T ss_dssp             EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEES
T ss_pred             eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEE
Confidence            9999998888888888888889999999999   888774

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.32  E-value=2.8e-12  Score=114.20  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-c
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-P  189 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~  189 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++. +..+++++|+.++++.+++      ..++++++.+|+.+ +.+ .
T Consensus        40 ~~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~  116 (348)
T 2y1w_A           40 RAILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  116 (348)
T ss_dssp             HHHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence            34555554  456789999999999999988875 5679999999447776654      34789999999988 555 5


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ||+|++..++|++..+.....+.++++.|+|   ||.+++.
T Consensus       117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~  154 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT  154 (348)
T ss_dssp             EEEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred             eeEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence            9999999999988877777889999999999   8887744

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.30  E-value=2.6e-12  Score=106.87  Aligned_cols=98  Identities=20%  Similarity=0.267  Sum_probs=77.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC----CC--ccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA----IS--PADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~----~p--~~D~v~~~~  197 (296)
                      ...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ...+++++.+|..+.    ++  .+|.|++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            567999999999999999999999999999999 899888765     346799999997662    33  489998864


Q ss_pred             hhccCCchHH-------HHHHHHHHHhcccCCCCcEEEEEe
Q 022515          198 ILHDWNDEEC-------VKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       198 vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ... |+....       ..+++.++++|+|   ||.+++..
T Consensus       114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~t  150 (218)
T 3dxy_A          114 PDP-WHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMAT  150 (218)
T ss_dssp             CCC-CCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CCC-ccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEEe
Confidence            432 232211       2489999999999   88887765

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.30  E-value=4e-12  Score=108.51  Aligned_cols=96  Identities=15%  Similarity=0.173  Sum_probs=78.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.+++ ...  .++.+|+.+ +.+  .||+|++..+++++.+
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~  129 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--NVVEAKAEDLPFPSGAFEAVLALGDVLSYVE  129 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--CEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC--CEEECcHHHCCCCCCCEEEEEEcchhhhccc
Confidence            6689999999999999999887  569999999 999998876 222  388899987 554  4999999886666643


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      + ...+|++++++|+|   ||++++....
T Consensus       130 ~-~~~~l~~~~~~Lkp---gG~l~~~~~~  154 (260)
T 2avn_A          130 N-KDKAFSEIRRVLVP---DGLLIATVDN  154 (260)
T ss_dssp             C-HHHHHHHHHHHEEE---EEEEEEEEEB
T ss_pred             c-HHHHHHHHHHHcCC---CeEEEEEeCC
Confidence            3 56899999999999   8988887653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.29  E-value=8.9e-12  Score=102.69  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=82.2

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---C
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---S  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---p  188 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++.  ..+++++|+ +.+++.+++     ...++++..+|..+..   .
T Consensus        67 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  142 (210)
T 3lbf_A           67 ARMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARA  142 (210)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCC
Confidence            34455555  567889999999999999999998  679999999 999988876     2458999999998832   2


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .||+|++..++|++++        ++.+.|+|   ||++++.-.
T Consensus       143 ~~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~  175 (210)
T 3lbf_A          143 PFDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLPVG  175 (210)
T ss_dssp             CEEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEEEC
T ss_pred             CccEEEEccchhhhhH--------HHHHhccc---CcEEEEEEc
Confidence            5999999999998886        47788999   898888654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.29  E-value=7.8e-12  Score=103.43  Aligned_cols=101  Identities=14%  Similarity=0.148  Sum_probs=82.5

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC---
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS---  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p---  188 (296)
                      .+++.+.  ..++.+|||||||+|.++..+++.. |..+++++|+ +.+++.+++     ...++++..+|+....+   
T Consensus        68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            4444444  5677899999999999999999987 6689999999 899988875     33679999999876433   


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .||+|++..++|++++        ++.+.|+|   ||++++...
T Consensus       146 ~fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~~~  178 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMPVG  178 (215)
T ss_dssp             CEEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEES
T ss_pred             CeeEEEECCchHHHHH--------HHHHHcCC---CcEEEEEEC
Confidence            4999999999998773        67889999   898888753

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.29  E-value=7.3e-12  Score=104.26  Aligned_cols=100  Identities=12%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C-----Cccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I-----SPAD  191 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~-----p~~D  191 (296)
                      ..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      ..++++++.+|..+.   .     ..||
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            45678999999999999999999998 789999999 999988765      456899999998762   1     3499


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      +|++...     ......+++++.+.|+|   ||.+++.+...+
T Consensus       136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  171 (223)
T 3duw_A          136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGDNVVRE  171 (223)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEESCSGG
T ss_pred             EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence            9998543     33456889999999999   887777665443

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.29  E-value=3.9e-12  Score=106.78  Aligned_cols=99  Identities=12%  Similarity=0.260  Sum_probs=80.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-----CccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-----SPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-----p~~D~v~~  195 (296)
                      ..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+.+..     ..||+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            45678999999999999999999889999999999 999988876      3469999999998732     35999997


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      ...     ......+++++.+.|+|   ||.+++-+..+
T Consensus       149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d~~~~  179 (232)
T 3ntv_A          149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITDNVLY  179 (232)
T ss_dssp             ETT-----SSSHHHHHHHHGGGEEE---EEEEEEECTTG
T ss_pred             cCc-----HHHHHHHHHHHHHhcCC---CeEEEEeeCCc
Confidence            532     33355789999999999   88876655443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.29  E-value=4.4e-12  Score=107.64  Aligned_cols=100  Identities=10%  Similarity=0.138  Sum_probs=81.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C---Ccccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I---SPADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~---p~~D~v  193 (296)
                      ..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++      ..++|+++.+|..+  + .   ..||+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            45678999999999999999999998 889999999 999988876      35689999999866  1 2   159999


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      ++..     +......+|+++.+.|+|   ||.|++.+....
T Consensus       141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~~~~~~  174 (248)
T 3tfw_A          141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGDNVVRD  174 (248)
T ss_dssp             EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEECCSGG
T ss_pred             EECC-----chHHHHHHHHHHHHhcCC---CeEEEEeCCCcC
Confidence            9854     344456789999999999   888777665443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.28  E-value=9.5e-12  Score=107.26  Aligned_cols=142  Identities=10%  Similarity=0.024  Sum_probs=95.5

Q ss_pred             HHHHhcccccC-CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEE-eccCCC----CCC--c
Q 022515          119 VMIHKCKDVFE-GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYV-GGDMFE----AIS--P  189 (296)
Q Consensus       119 ~~~~~~~~~~~-~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~-~~D~~~----~~p--~  189 (296)
                      .+++.+.  .. .+.+|||||||||.++..+++. +..+++++|+ +.|++.+.+...|+... ..|+..    .+|  .
T Consensus        75 ~~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~  151 (291)
T 3hp7_A           75 KALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL  151 (291)
T ss_dssp             HHHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred             HHHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence            4455554  33 4579999999999999988886 4568999999 88988743244555433 234332    133  3


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCcc-------c
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGT-------E  262 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------~  262 (296)
                      ||++++..++|++     ..+|++++++|+|   ||+++++-  -|.....    .  ...+      .+|.       .
T Consensus       152 fD~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~lv--kPqfe~~----~--~~~~------~~G~vrd~~~~~  209 (291)
T 3hp7_A          152 PSFASIDVSFISL-----NLILPALAKILVD---GGQVVALV--KPQFEAG----R--EQIG------KNGIVRESSIHE  209 (291)
T ss_dssp             CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CGGGTSC----G--GGCC-------CCCCCCHHHHH
T ss_pred             CCEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEEE--CcccccC----h--hhcC------CCCccCCHHHHH
Confidence            8999998887754     3689999999999   99998862  1111111    0  0000      0121       2


Q ss_pred             cCHHHHHHHHHhcCCceeEEEEc
Q 022515          263 RDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       263 rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      ++.+++.++++++||++..+...
T Consensus       210 ~~~~~v~~~~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          210 KVLETVTAFAVDYGFSVKGLDFS  232 (291)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEC
Confidence            36789999999999998887764

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.28  E-value=1.3e-11  Score=104.43  Aligned_cols=101  Identities=14%  Similarity=0.207  Sum_probs=81.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C------Ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I------SPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~------p~~  190 (296)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      ..++|+++.+|..+  + .      ..|
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence            34568999999999999999999886 789999999 899988876      35799999999876  2 2      359


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      |+|++...     ......+++++.+.|+|   ||.+++.+..+..
T Consensus       138 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~~g  175 (242)
T 3r3h_A          138 DFIFIDAD-----KTNYLNYYELALKLVTP---KGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSSSS
T ss_pred             eEEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEECCccCC
Confidence            99998543     33456789999999999   8887776665543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.27  E-value=6.9e-12  Score=106.39  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHH--CCCCeEEeccc-hhHhhccCC---CC------CC----------------------
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKA--FPKLECTCFDL-PHVVNGLDS---DL------AN----------------------  175 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~------~r----------------------  175 (296)
                      +..+|||+|||+|.++..+++.  +|..+++++|+ +.+++.|++   ..      ++                      
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999999998  78889999999 999988875   22      12                      


Q ss_pred             ---ee-------------EEeccCCCCC-------C-ccceeEehhhhccCCc-------hHHHHHHHHHHHhcccCCCC
Q 022515          176 ---LK-------------YVGGDMFEAI-------S-PADAVLLKWILHDWND-------EECVKILKKCKEAITSDGKK  224 (296)
Q Consensus       176 ---i~-------------~~~~D~~~~~-------p-~~D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~g  224 (296)
                         ++             +..+|+++..       + .||+|++...++...+       +....+++++.++|+|   |
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---g  207 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA---H  207 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT---T
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCC---C
Confidence               77             9999998843       3 5999999876655443       5566899999999999   9


Q ss_pred             cEEEEEee
Q 022515          225 GKVIIIDM  232 (296)
Q Consensus       225 G~lli~e~  232 (296)
                      |+++++..
T Consensus       208 G~l~~~~~  215 (250)
T 1o9g_A          208 AVIAVTDR  215 (250)
T ss_dssp             CEEEEEES
T ss_pred             cEEEEeCc
Confidence            99998543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.27  E-value=3.3e-12  Score=106.34  Aligned_cols=100  Identities=13%  Similarity=0.190  Sum_probs=79.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CC------Ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AI------SPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~------p~~  190 (296)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.|++      ..++++++.+|..+   ..      ..|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            34678999999999999999999865 889999999 999988876      45689999999754   22      259


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      |+|++....|++.+  ..++++.+ +.|+|   ||.+++.+..
T Consensus       136 D~V~~d~~~~~~~~--~~~~~~~~-~~Lkp---gG~lv~~~~~  172 (221)
T 3u81_A          136 DMVFLDHWKDRYLP--DTLLLEKC-GLLRK---GTVLLADNVI  172 (221)
T ss_dssp             SEEEECSCGGGHHH--HHHHHHHT-TCCCT---TCEEEESCCC
T ss_pred             EEEEEcCCcccchH--HHHHHHhc-cccCC---CeEEEEeCCC
Confidence            99999887776543  23677777 99999   8887765544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.27  E-value=1.6e-11  Score=103.40  Aligned_cols=95  Identities=17%  Similarity=0.152  Sum_probs=78.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHH----CCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC--C---C--ccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKA----FPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA--I---S--PADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~--~---p--~~D~v~~~~  197 (296)
                      ++.+|||||||+|..+..+++.    +|+.+++++|+ +.+++.|+...++|+++.+|..+.  +   .  .||+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            4579999999999999999997    78899999999 899988875457899999999872  1   2  499998865


Q ss_pred             hhccCCchHHHHHHHHHHH-hcccCCCCcEEEEEee
Q 022515          198 ILHDWNDEECVKILKKCKE-AITSDGKKGKVIIIDM  232 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~-aL~p~~~gG~lli~e~  232 (296)
                      . |.    +...+|+++.+ .|+|   ||++++.+.
T Consensus       161 ~-~~----~~~~~l~~~~r~~Lkp---GG~lv~~d~  188 (236)
T 2bm8_A          161 A-HA----NTFNIMKWAVDHLLEE---GDYFIIEDM  188 (236)
T ss_dssp             S-CS----SHHHHHHHHHHHTCCT---TCEEEECSC
T ss_pred             c-hH----hHHHHHHHHHHhhCCC---CCEEEEEeC
Confidence            4 42    34578999997 9999   898888764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.26  E-value=4e-11  Score=107.78  Aligned_cols=97  Identities=5%  Similarity=-0.016  Sum_probs=80.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-----ccceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-----PADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-----~~D~v~~~~v  198 (296)
                      ++.+|||+| |+|.++..+++..|..+++++|+ |.+++.|++     ..++++++.+|+.+.+|     .||+|++...
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            468999999 99999999999988889999999 999998876     22389999999988432     4999999876


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      +|..   ....+++++.++|+|   ||++++++..
T Consensus       251 ~~~~---~~~~~l~~~~~~Lkp---gG~~~~~~~~  279 (373)
T 2qm3_A          251 ETLE---AIRAFVGRGIATLKG---PRCAGYFGIT  279 (373)
T ss_dssp             SSHH---HHHHHHHHHHHTBCS---TTCEEEEEEC
T ss_pred             CchH---HHHHHHHHHHHHccc---CCeEEEEEEe
Confidence            6543   246899999999999   9987777654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.26  E-value=1.9e-11  Score=99.16  Aligned_cols=100  Identities=12%  Similarity=0.039  Sum_probs=80.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--C--CccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--I--SPADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~--p~~D~v~~~~  197 (296)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++     ..++++++.+|+.+ .  .  ..||+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            35679999999999999987774 5568999999 999998876     23689999999887 2  2  3599999987


Q ss_pred             hhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 022515          198 ILHDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMI  233 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~  233 (296)
                      .+|+ ..++..++++.+.+  .|+|   ||.+++....
T Consensus       122 p~~~-~~~~~~~~l~~~~~~~~L~p---gG~l~~~~~~  155 (189)
T 3p9n_A          122 PYNV-DSADVDAILAALGTNGWTRE---GTVAVVERAT  155 (189)
T ss_dssp             CTTS-CHHHHHHHHHHHHHSSSCCT---TCEEEEEEET
T ss_pred             CCCc-chhhHHHHHHHHHhcCccCC---CeEEEEEecC
Confidence            7654 33556789999999  9999   8888776543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.26  E-value=6.3e-12  Score=105.41  Aligned_cols=133  Identities=14%  Similarity=0.069  Sum_probs=100.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC-CC-ccceeEehhhhcc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA-IS-PADAVLLKWILHD  201 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~-~p-~~D~v~~~~vlh~  201 (296)
                      ..+.+|||||||.|-++..+...+|..+++++|+ +.+++.+++    ...+.++...|+... .+ .||++++.-++|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence            4578999999999999999999999999999999 999998876    466689999999984 33 5999999999999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~  281 (296)
                      .++++....+ ++.++|+|   +|.++-++.-.=.....        .++-          .-...|++.+.+.|+...+
T Consensus       211 Le~q~kg~g~-~ll~aL~~---~~vvVSfp~ksl~Grs~--------gm~~----------~Y~~~~e~~~~~~g~~~~~  268 (281)
T 3lcv_B          211 LETQQRGSGW-EVIDIVNS---PNIVVTFPTKSLGQRSK--------GMFQ----------NYSQSFESQARERSCRIQR  268 (281)
T ss_dssp             HHHHSTTHHH-HHHHHSSC---SEEEEEEECC---------------CHHH----------HHHHHHHHHHHHHTCCEEE
T ss_pred             hhhhhhHHHH-HHHHHhCC---CCEEEeccchhhcCCCc--------chhh----------HHHHHHHHHHHhcCCceee
Confidence            9988766667 89999999   55555555411111110        1111          1346889999999996555


Q ss_pred             EE
Q 022515          282 II  283 (296)
Q Consensus       282 ~~  283 (296)
                      +.
T Consensus       269 ~~  270 (281)
T 3lcv_B          269 LE  270 (281)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.25  E-value=1.4e-11  Score=103.34  Aligned_cols=99  Identities=11%  Similarity=0.218  Sum_probs=81.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C---CccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I---SPADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~---p~~D~v~  194 (296)
                      ..++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.|++      ..++++++.+|+.+.   .   ..||+|+
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            44678999999999999999999999999999999 899988875      236899999999872   2   2599999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      +....+     ....+|+++.+.|+|   ||++++.+...
T Consensus       132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~~~~~  163 (233)
T 2gpy_A          132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSDNVLF  163 (233)
T ss_dssp             EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEETTTC
T ss_pred             ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEEcCCc
Confidence            977654     345789999999999   88888765433

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.25  E-value=9.8e-12  Score=108.39  Aligned_cols=98  Identities=15%  Similarity=0.240  Sum_probs=78.9

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC---CCC--ccceeEehhhhc
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE---AIS--PADAVLLKWILH  200 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~---~~p--~~D~v~~~~vlh  200 (296)
                      .+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++     ...|++++.+|..+   ..+  .||+|++....+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            4999999999999999999999999999999 999999887     25799999999876   232  599999865544


Q ss_pred             cCCchH--HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          201 DWNDEE--CVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       201 ~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ......  ..+++++++++|+|   ||.+++...
T Consensus       171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~~~  201 (317)
T 3gjy_A          171 AITPQNFTTVEFFEHCHRGLAP---GGLYVANCG  201 (317)
T ss_dssp             SCCCGGGSBHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             cccchhhhHHHHHHHHHHhcCC---CcEEEEEec
Confidence            332222  15789999999999   777766543

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.25  E-value=1.7e-11  Score=106.09  Aligned_cols=95  Identities=18%  Similarity=0.206  Sum_probs=76.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC-cc---ceeEeh--
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS-PA---DAVLLK--  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p-~~---D~v~~~--  196 (296)
                      +..+|||+|||+|.++..+++. |+.+++++|+ +.+++.|++      ..+|++|+.+|+++..+ .|   |+|+++  
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence            5579999999999999999999 9999999999 999988876      34579999999998543 58   999996  


Q ss_pred             ----------hhhccCCch------HHHHHHHHHH-HhcccCCCCcEEEE
Q 022515          197 ----------WILHDWNDE------ECVKILKKCK-EAITSDGKKGKVII  229 (296)
Q Consensus       197 ----------~vlh~~~d~------~~~~iL~~~~-~aL~p~~~gG~lli  229 (296)
                                .+. +.|..      +-..+++++. +.++|   ||.+++
T Consensus       202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~  247 (284)
T 1nv8_A          202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLM  247 (284)
T ss_dssp             CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEE
T ss_pred             CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEE
Confidence                      233 22221      1237899999 99999   888775

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.24  E-value=8.6e-12  Score=103.90  Aligned_cols=100  Identities=11%  Similarity=0.118  Sum_probs=81.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C------Ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I------SPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~------p~~  190 (296)
                      ..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      ..++++++.+|..+.   .      ..|
T Consensus        62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            34667999999999999999999988 789999999 899988876      357899999998652   1      459


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      |+|++..     +......+++++.+.|+|   ||.+++.+...+
T Consensus       142 D~v~~~~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  178 (225)
T 3tr6_A          142 DLIYIDA-----DKANTDLYYEESLKLLRE---GGLIAVDNVLRR  178 (225)
T ss_dssp             EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred             cEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEeCCCcC
Confidence            9999643     334456789999999999   888887766543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.24  E-value=3.3e-12  Score=107.26  Aligned_cols=147  Identities=10%  Similarity=-0.015  Sum_probs=86.2

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCe--------eEEe-ccCCCCCC
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANL--------KYVG-GDMFEAIS  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri--------~~~~-~D~~~~~p  188 (296)
                      .+++.+.. ...+.+|||||||+|.++..+++. ...+++++|+ +.+++.+++...++        .+.. .|+..+. 
T Consensus        27 ~~L~~~~~-~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-  103 (232)
T 3opn_A           27 KALKEFHL-EINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR-  103 (232)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC-
T ss_pred             HHHHHcCC-CCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC-
Confidence            34444441 234569999999999999999987 3349999999 89988765433333        2222 2222211 


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh-hcCccccCHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV-LLTGTERDEKE  267 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~rt~~e  267 (296)
                       +|.+.+..++..+     ..+|++++++|+|   ||++++..  .+.      +........-.-.. .......+.++
T Consensus       104 -~d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~~--~p~------~e~~~~~~~~~G~~~d~~~~~~~~~~  166 (232)
T 3opn_A          104 -PSFTSIDVSFISL-----DLILPPLYEILEK---NGEVAALI--KPQ------FEAGREQVGKNGIIRDPKVHQMTIEK  166 (232)
T ss_dssp             -CSEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEEE--CHH------HHSCHHHHC-CCCCCCHHHHHHHHHH
T ss_pred             -CCEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEEE--Ccc------cccCHHHhCcCCeecCcchhHHHHHH
Confidence             2333332222222     3689999999999   99988853  110      00000000000000 00011237889


Q ss_pred             HHHHHHhcCCceeEEEEc
Q 022515          268 WTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~~  285 (296)
                      +.++++++||++..+...
T Consensus       167 l~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          167 VLKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             HHHHHHHHTEEEEEEEEC
T ss_pred             HHHHHHHCCCEEEEEEEc
Confidence            999999999999887654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.24  E-value=3.7e-11  Score=100.14  Aligned_cols=95  Identities=8%  Similarity=0.153  Sum_probs=76.2

Q ss_pred             CEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CC-CCeeEEeccCCC---CC--CccceeEehh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DL-ANLKYVGGDMFE---AI--SPADAVLLKW  197 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~D~~~---~~--p~~D~v~~~~  197 (296)
                      .+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++      .. ++++++.+|..+   ..  ..||+|++..
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            4999999999999999999875 789999999 999988876      33 689999999876   23  2599999854


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      .     ......+++++.+.|+|   ||.+++.+..+
T Consensus       138 ~-----~~~~~~~l~~~~~~Lkp---GG~lv~dn~~~  166 (221)
T 3dr5_A          138 S-----PMDLKALVDAAWPLLRR---GGALVLADALL  166 (221)
T ss_dssp             C-----TTTHHHHHHHHHHHEEE---EEEEEETTTTG
T ss_pred             c-----HHHHHHHHHHHHHHcCC---CcEEEEeCCCC
Confidence            2     23345789999999999   77777655444

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.23  E-value=2.5e-11  Score=101.49  Aligned_cols=100  Identities=19%  Similarity=0.184  Sum_probs=81.1

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCCCC---cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEAIS---PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~~p---~~  190 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ...+++++.+|+.+..+   .|
T Consensus        60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f  135 (231)
T 1vbf_A           60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY  135 (231)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence            34455554  5677899999999999999999985  79999999 999988876   22289999999987332   49


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      |+|++..++|++++        ++.+.|+|   ||++++...
T Consensus       136 D~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~~~  166 (231)
T 1vbf_A          136 DRVVVWATAPTLLC--------KPYEQLKE---GGIMILPIG  166 (231)
T ss_dssp             EEEEESSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred             cEEEECCcHHHHHH--------HHHHHcCC---CcEEEEEEc
Confidence            99999999998874        47788999   899888764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.23  E-value=1.8e-11  Score=102.85  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=81.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC---
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS---  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p---  188 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++     ...++++..+|+..+++   
T Consensus        81 ~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (235)
T 1jg1_A           81 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  157 (235)
T ss_dssp             HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence            34444444  56778999999999999999999987 89999999 899988875     23569999999855443   


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +||+|++..+++++++        ++.+.|+|   ||++++...
T Consensus       158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~~~  190 (235)
T 1jg1_A          158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIPVG  190 (235)
T ss_dssp             CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEEC
T ss_pred             CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEEEe
Confidence            3999999999988764        57788999   888887653

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.22  E-value=2.6e-11  Score=109.06  Aligned_cols=97  Identities=13%  Similarity=0.145  Sum_probs=82.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~  201 (296)
                      ++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++    ...+++++.+|+.+ ..+  .||+|++...+|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            5679999999999999999987  569999999 899988876    33359999999998 343  5999999988887


Q ss_pred             ---CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          202 ---WNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       202 ---~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                         ...+....+++++.+.|+|   ||+++++.
T Consensus       311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv~  340 (381)
T 3dmg_A          311 GGAVILDVAQAFVNVAAARLRP---GGVFFLVS  340 (381)
T ss_dssp             TCSSCCHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             cccccHHHHHHHHHHHHHhcCc---CcEEEEEE
Confidence               3456667899999999999   89888864

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.22  E-value=1.5e-11  Score=109.58  Aligned_cols=97  Identities=14%  Similarity=0.167  Sum_probs=77.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~v  198 (296)
                      ..++.+|||||||+|.++..+++. +..+++++|+.++++.|++      ..++++++.+|+.+ +.|  .||+|++..+
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            446689999999999999999987 5679999999558877765      46779999999998 665  4999999776


Q ss_pred             hccCC-chHHHHHHHHHHHhcccCCCCcEEE
Q 022515          199 LHDWN-DEECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       199 lh~~~-d~~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                      .|.+. .+....+++.+.+.|+|   ||.++
T Consensus       143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li  170 (349)
T 3q7e_A          143 GYCLFYESMLNTVLHARDKWLAP---DGLIF  170 (349)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             cccccCchhHHHHHHHHHHhCCC---CCEEc
Confidence            55442 22345789999999999   88776

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.22  E-value=5.3e-11  Score=94.66  Aligned_cols=97  Identities=14%  Similarity=0.255  Sum_probs=78.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCC-C--------CC--ccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE-A--------IS--PADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~--------~p--~~D~v~~  195 (296)
                      ..+..+|||+|||+|.++..+++.+ |+.+++++|+.++++     ..++++..+|+.+ +        .+  .||+|++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~   94 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMS   94 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc-----cCcEEEEEcccccchhhhhhhccCCCCceeEEEE
Confidence            3566799999999999999999985 778999999933543     2679999999988 4        44  4999999


Q ss_pred             hhhhccCCchH---------HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          196 KWILHDWNDEE---------CVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       196 ~~vlh~~~d~~---------~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ..++|......         ...+++++.+.|+|   ||++++...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~~~  137 (180)
T 1ej0_A           95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVKVF  137 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             CCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEEEe
Confidence            98888765431         15789999999999   898887664

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.22  E-value=5.6e-11  Score=102.67  Aligned_cols=99  Identities=18%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc--hhHhhccCC-C----------C----CCeeEEeccCCCC---C
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL--PHVVNGLDS-D----------L----ANLKYVGGDMFEA---I  187 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~-~----------~----~ri~~~~~D~~~~---~  187 (296)
                      ..++.+|||||||+|.++..+++.. ..+++++|+  +.+++.+++ .          .    +++++...|..+.   .
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            3456799999999999999888763 348999998  577766543 1          1    4788886654431   1


Q ss_pred             ------CccceeEehhhhccCCchHHHHHHHHHHHhcc---cCCCCcEEEEE
Q 022515          188 ------SPADAVLLKWILHDWNDEECVKILKKCKEAIT---SDGKKGKVIII  230 (296)
Q Consensus       188 ------p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~---p~~~gG~lli~  230 (296)
                            ..||+|++..++|+.++  ...+++.+.++|+   | ++||+++++
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p-~~gG~l~v~  204 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPAN-DPTAVALVT  204 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTT-CTTCEEEEE
T ss_pred             HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCC-CCCCEEEEE
Confidence                  35999999999987554  4588999999999   6 236877664

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.21  E-value=2.5e-11  Score=102.07  Aligned_cols=99  Identities=12%  Similarity=0.208  Sum_probs=74.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------CCCCeeEEeccCCC--C--CC--cc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------DLANLKYVGGDMFE--A--IS--PA  190 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~D~~~--~--~p--~~  190 (296)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++           ...+++++.+|+.+  +  ++  .+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            4567899999999999999999999999999999 888876542           24689999999986  2  33  48


Q ss_pred             ceeEehhhhccCCch---H----HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          191 DAVLLKWILHDWNDE---E----CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       191 D~v~~~~vlh~~~d~---~----~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      |.|++...-. |...   .    ...+|+++.++|+|   ||.+++..
T Consensus       125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~t  168 (235)
T 3ckk_A          125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTIT  168 (235)
T ss_dssp             EEEEEESCC------------CCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEEe
Confidence            9988643221 1110   0    13689999999999   88888764

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.21  E-value=3.6e-11  Score=105.71  Aligned_cols=102  Identities=16%  Similarity=0.286  Sum_probs=82.9

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC---
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI---  187 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~---  187 (296)
                      ..+++.+.  ..++.+|||||||+|.++..+++..+ +.+++++|+ +.+++.|++     ...+++++.+|+.+..   
T Consensus        65 ~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~  142 (317)
T 1dl5_A           65 ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (317)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence            34455555  56778999999999999999999887 478999999 999988875     2356999999998732   


Q ss_pred             CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          188 SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ..||+|++..++|+++        +++.+.|+|   ||++++...
T Consensus       143 ~~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~~  176 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVPIN  176 (317)
T ss_dssp             CCEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEEBC
T ss_pred             CCeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEEEC
Confidence            2599999999999877        357788999   899888753

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.20  E-value=5.8e-11  Score=102.22  Aligned_cols=103  Identities=14%  Similarity=0.228  Sum_probs=83.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC----C----CCCeeEEeccCCC-C
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS----D----LANLKYVGGDMFE-A  186 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~----~~ri~~~~~D~~~-~  186 (296)
                      ..++..++  ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++    .    .++++++.+|+.+ +
T Consensus        89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            34555555  667889999999999999999996 57889999999 999888775    2    3689999999987 4


Q ss_pred             CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          187 IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       187 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .+  .||+|++     +.++..  .+|+++.++|+|   ||++++...
T Consensus       167 ~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~p---gG~l~~~~~  204 (280)
T 1i9g_A          167 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVA  204 (280)
T ss_dssp             CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEES
T ss_pred             CCCCceeEEEE-----CCcCHH--HHHHHHHHhCCC---CCEEEEEeC
Confidence            43  4999998     334433  679999999999   899988764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.20  E-value=2.6e-11  Score=109.05  Aligned_cols=102  Identities=13%  Similarity=0.112  Sum_probs=81.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vl  199 (296)
                      ..++.+|||||||+|.++..++++. ..+++++|+..+++.|++      ..++++++.+|+.+ +.+ .||+|++..+.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            4567899999999999999999873 349999999777777765      45789999999988 555 59999997766


Q ss_pred             ccCCch-HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          200 HDWNDE-ECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       200 h~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      |....+ ....+++++.+.|+|   ||.+++.+..
T Consensus       140 ~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~~~~  171 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKP---TGVMYPSHAR  171 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEE---EEEEESSEEE
T ss_pred             hcccchHHHHHHHHHHHhhCCC---CeEEEEecCe
Confidence            665433 345789999999999   8887765543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.19  E-value=2.4e-11  Score=102.90  Aligned_cols=95  Identities=17%  Similarity=0.312  Sum_probs=74.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------------CCCCeeEEeccCCCC----CC-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------------DLANLKYVGGDMFEA----IS-  188 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~D~~~~----~p-  188 (296)
                      ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++             ...+++++.+|+.+.    ++ 
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            34667999999999999999999999999999999 888877643             125799999998862    22 


Q ss_pred             -ccceeEehhhhccCCchHH-----------HHHHHHHHHhcccCCCCcEEEEE
Q 022515          189 -PADAVLLKWILHDWNDEEC-----------VKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~-----------~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                       .+|.|++     +++++..           ..+++++.++|+|   ||.+++.
T Consensus       127 ~~~d~v~~-----~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~  172 (246)
T 2vdv_E          127 GQLSKMFF-----CFPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI  172 (246)
T ss_dssp             TCEEEEEE-----ESCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred             cccCEEEE-----ECCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence             3677664     2344321           3789999999999   8888884

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.18  E-value=1.2e-10  Score=95.07  Aligned_cols=102  Identities=16%  Similarity=0.174  Sum_probs=76.2

Q ss_pred             HHHhcccccCCCCEEEEecCCchHHHHHHHHHCC--CCeEEeccchhHhhccCCCCCCeeEEeccCCC-C----------
Q 022515          120 MIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP--KLECTCFDLPHVVNGLDSDLANLKYVGGDMFE-A----------  186 (296)
Q Consensus       120 ~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~----------  186 (296)
                      +.+.+. .+.++.+|||||||+|.++..+++++|  +.+++++|+.++.     ...+++++.+|+.+ +          
T Consensus        13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----~~~~v~~~~~d~~~~~~~~~~~~~~i   86 (201)
T 2plw_A           13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----PIPNVYFIQGEIGKDNMNNIKNINYI   86 (201)
T ss_dssp             HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----CCTTCEEEECCTTTTSSCCC------
T ss_pred             HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----CCCCceEEEccccchhhhhhcccccc
Confidence            344443 135678999999999999999999998  6899999994321     24578999999987 4          


Q ss_pred             ---------------CC--ccceeEehhhhccCC----chH-----HHHHHHHHHHhcccCCCCcEEEEE
Q 022515          187 ---------------IS--PADAVLLKWILHDWN----DEE-----CVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       187 ---------------~p--~~D~v~~~~vlh~~~----d~~-----~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                                     ++  .||+|++...+|...    +..     ...+|+++.++|+|   ||++++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~  153 (201)
T 2plw_A           87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVK  153 (201)
T ss_dssp             -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence                           33  499999987776532    111     12489999999999   8887763

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.18  E-value=7.8e-11  Score=104.52  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=79.1

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--c
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--P  189 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~  189 (296)
                      .+.+...  ..++.+|||||||+|.++..+++. +..+++++|+.++++.|++      ..++++++.+|+.+ +.+  .
T Consensus        55 ~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  131 (340)
T 2fyt_A           55 FIYQNPH--IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK  131 (340)
T ss_dssp             HHHHCGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred             HHHhhhh--hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence            3444333  556789999999999999998887 4568999999448887765      34899999999988 555  4


Q ss_pred             cceeEehhhhccCC-chHHHHHHHHHHHhcccCCCCcEEE
Q 022515          190 ADAVLLKWILHDWN-DEECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       190 ~D~v~~~~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                      ||+|++..+.+.+. ......+|+++.+.|+|   ||+++
T Consensus       132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li  168 (340)
T 2fyt_A          132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY  168 (340)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred             EEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence            99999876433322 22345789999999999   88876

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.18  E-value=9.5e-11  Score=102.86  Aligned_cols=103  Identities=14%  Similarity=0.173  Sum_probs=79.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C-CC-ccceeEeh-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A-IS-PADAVLLK-  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~-~p-~~D~v~~~-  196 (296)
                      ..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++     ...+++++.+|+.+ + .+ .||+|++. 
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  195 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence            56778999999999999999999875 479999999 888888765     34579999999987 3 23 59999983 


Q ss_pred             -----hhhccCC-------chH-------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          197 -----WILHDWN-------DEE-------CVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       197 -----~vlh~~~-------d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                           .+++..+       .++       ..++|+++.+.|+|   ||++++....
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~stcs  248 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCS  248 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCC
Confidence                 2343322       221       15899999999999   8888876643

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.17  E-value=2.1e-11  Score=96.82  Aligned_cols=94  Identities=10%  Similarity=0.010  Sum_probs=72.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCC-------ccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAIS-------PADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p-------~~D~v~~~~  197 (296)
                      ++.+|||+|||+|.++..+++..+.  ++++|+ +.+++.+++    ...+++++.+|+.+..+       .||+|++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            5679999999999999999998664  999999 999988876    11189999999876211       599999987


Q ss_pred             hhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEee
Q 022515          198 ILHDWNDEECVKILKKCK--EAITSDGKKGKVIIIDM  232 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~e~  232 (296)
                      .+| ...+   .+++.+.  +.|+|   ||.+++...
T Consensus       119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~~~  148 (171)
T 1ws6_A          119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQHP  148 (171)
T ss_dssp             CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEEEE
T ss_pred             CCc-hhHH---HHHHHHHhhcccCC---CcEEEEEeC
Confidence            776 2222   3455555  99999   888776554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.17  E-value=3.4e-11  Score=103.10  Aligned_cols=93  Identities=16%  Similarity=0.249  Sum_probs=78.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++...++.+..+|+.+ +.+  .||+|++..+.     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            4678999999999999999999988899999999 99999887645678999999887 544  49999986542     


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                          ..++++.++|+|   ||++++....
T Consensus       159 ----~~l~~~~~~L~p---gG~l~~~~~~  180 (269)
T 1p91_A          159 ----CKAEELARVVKP---GGWVITATPG  180 (269)
T ss_dssp             ----CCHHHHHHHEEE---EEEEEEEEEC
T ss_pred             ----hhHHHHHHhcCC---CcEEEEEEcC
Confidence                248899999999   9999988754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.17  E-value=1.7e-11  Score=108.62  Aligned_cols=102  Identities=16%  Similarity=0.204  Sum_probs=79.8

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC--C--------------CCCeeEEe
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS--D--------------LANLKYVG  180 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--~--------------~~ri~~~~  180 (296)
                      .++..+.  ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.|++  .              .+++++..
T Consensus        96 ~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           96 MILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3455555  667889999999999999999998 57789999999 899888775  1              36899999


Q ss_pred             ccCCCC---CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          181 GDMFEA---IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       181 ~D~~~~---~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +|+.+.   ++  .||+|++..     ++..  .+++++.++|+|   ||++++...
T Consensus       174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~~--~~l~~~~~~Lkp---gG~lv~~~~  220 (336)
T 2b25_A          174 KDISGATEDIKSLTFDAVALDM-----LNPH--VTLPVFYPHLKH---GGVCAVYVV  220 (336)
T ss_dssp             SCTTCCC-------EEEEEECS-----SSTT--TTHHHHGGGEEE---EEEEEEEES
T ss_pred             CChHHcccccCCCCeeEEEECC-----CCHH--HHHHHHHHhcCC---CcEEEEEeC
Confidence            999873   33  499999842     2222  378999999999   999987764

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.17  E-value=1.9e-11  Score=100.82  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=78.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--CC-CccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--AI-SPADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~~-p~~D~v~~~~  197 (296)
                      .+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++      ..++++++.+|..+  +. ++||+|++..
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  134 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC  134 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence            3567999999999999999999988 889999999 999988875      34689999999865  22 1299999863


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      .     ......+++++.+.|+|   ||.+++.+..+
T Consensus       135 ~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~  163 (210)
T 3c3p_A          135 D-----VFNGADVLERMNRCLAK---NALLIAVNALR  163 (210)
T ss_dssp             T-----TSCHHHHHHHHGGGEEE---EEEEEEESSSS
T ss_pred             C-----hhhhHHHHHHHHHhcCC---CeEEEEECccc
Confidence            2     23345889999999999   88877755443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.16  E-value=4.6e-11  Score=101.24  Aligned_cols=99  Identities=11%  Similarity=0.100  Sum_probs=79.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C-------Cc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I-------SP  189 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~-------p~  189 (296)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.|++      ..++|+++.+|..+  + .       ..
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            34567999999999999999999987 789999999 899988876      34689999999865  2 2       35


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      ||+|++...     ......+++++.+.|+|   ||.+++.+..+
T Consensus       157 fD~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d~~~~  193 (247)
T 1sui_A          157 YDFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYDNTLW  193 (247)
T ss_dssp             BSEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEECTTG
T ss_pred             EEEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEecCCc
Confidence            999998542     23346889999999999   88887766444

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.16  E-value=2.2e-10  Score=102.22  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=83.9

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-  187 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-  187 (296)
                      +..++....  +.+..+|||+|||+|.+++.++... |+.+++++|+ +.+++.|++     ..+++++..+|+.+ +. 
T Consensus       192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~  269 (354)
T 3tma_A          192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF  269 (354)
T ss_dssp             HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred             HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence            344455555  5677899999999999999999988 8899999999 999988876     22389999999998 43 


Q ss_pred             -CccceeEehhhhccC-C-chH----HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          188 -SPADAVLLKWILHDW-N-DEE----CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       188 -p~~D~v~~~~vlh~~-~-d~~----~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       +.||+|++.-..+.. . ..+    -..+++.+.+.|+|   ||++++..
T Consensus       270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~t  317 (354)
T 3tma_A          270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALLT  317 (354)
T ss_dssp             CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEEE
T ss_pred             cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence             348999995332211 1 111    25789999999999   99998864

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.16  E-value=3.5e-11  Score=101.33  Aligned_cols=100  Identities=17%  Similarity=0.224  Sum_probs=80.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C---------
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I---------  187 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~---------  187 (296)
                      ..+..+|||||||+|..+..+++.+| ..+++++|+ +.+++.|++      ..++++++.+|..+  + .         
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            45678999999999999999999987 789999999 999888875      23579999999865  1 1         


Q ss_pred             --------CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          188 --------SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       188 --------p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                              ..||+|++...     .+....+++++.+.|+|   ||++++.+...+
T Consensus       138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~~~~~~  185 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIADNVLWD  185 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEECSSGG
T ss_pred             cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEEccccC
Confidence                    45999998643     33455789999999999   888887665443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.15  E-value=1.9e-11  Score=97.86  Aligned_cols=97  Identities=11%  Similarity=0.030  Sum_probs=74.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C-CccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I-SPADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~-p~~D~v~~~~  197 (296)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++      ..++++++.+|+.+.   . ..||+|++..
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence            35679999999999999999887 6679999999 999988876      235899999998772   2 3599999976


Q ss_pred             hhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEee
Q 022515          198 ILHDWNDEECVKILKKCK--EAITSDGKKGKVIIIDM  232 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~e~  232 (296)
                      .+|.   .....+++.+.  +.|+|   ||.+++...
T Consensus       109 ~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~~~  139 (177)
T 2esr_A          109 PYAK---ETIVATIEALAAKNLLSE---QVMVVCETD  139 (177)
T ss_dssp             SSHH---HHHHHHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred             CCCc---chHHHHHHHHHhCCCcCC---CcEEEEEEC
Confidence            5532   22345666666  89999   787777654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.15  E-value=4.9e-11  Score=96.15  Aligned_cols=97  Identities=14%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC-------CCccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA-------ISPADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~-------~p~~D~v~  194 (296)
                      .+..+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++      ..++++++.+|+.+.       ...||+|+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~  121 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  121 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence            3567999999999999998887 45679999999 999988876      246899999998772       23599999


Q ss_pred             ehhhhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEee
Q 022515          195 LKWILHDWNDEECVKILKKC--KEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~--~~aL~p~~~gG~lli~e~  232 (296)
                      +...+|....+   ..++.+  .+.|+|   ||.+++...
T Consensus       122 ~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~~~  155 (187)
T 2fhp_A          122 LDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCETD  155 (187)
T ss_dssp             ECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEEEE
T ss_pred             ECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEEeC
Confidence            98775533333   445555  788999   887776543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.14  E-value=7.9e-11  Score=104.00  Aligned_cols=97  Identities=13%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~v  198 (296)
                      ..++.+|||||||+|.++..+++. +..+++++|+.++++.|++      ..++++++.+|+.+ +.|  .||+|++..+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence            345679999999999999988886 4568999999557777665      45789999999988 555  4999998765


Q ss_pred             hccCC-chHHHHHHHHHHHhcccCCCCcEEE
Q 022515          199 LHDWN-DEECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       199 lh~~~-d~~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                      .|.+. ......+++++.+.|+|   ||+++
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li  142 (328)
T 1g6q_1          115 GYFLLYESMMDTVLYARDHYLVE---GGLIF  142 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             hhhcccHHHHHHHHHHHHhhcCC---CeEEE
Confidence            55443 22345789999999999   88876

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.14  E-value=1.7e-10  Score=101.27  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=79.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C---------CCCeeEEeccCCCC----CCcccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D---------LANLKYVGGDMFEA----ISPADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---------~~ri~~~~~D~~~~----~p~~D~v  193 (296)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .         .+|++++.+|..+.    ...||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            3568999999999999999999878889999999 999988876 1         47899999998762    2259999


Q ss_pred             Eehhhhcc---CCchH--HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          194 LLKWILHD---WNDEE--CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       194 ~~~~vlh~---~~d~~--~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++....|.   -+.+.  ..+++++++++|+|   ||.+++..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQT  195 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEEc
Confidence            99766543   11111  25889999999999   88877753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.14  E-value=1.6e-10  Score=96.30  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=78.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-----CCCeEEeccc-hhHhhccCC-----C-----CCCeeEEeccCCCCC----
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-----PKLECTCFDL-PHVVNGLDS-----D-----LANLKYVGGDMFEAI----  187 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----~-----~~ri~~~~~D~~~~~----  187 (296)
                      ..++.+|||||||+|.++..+++..     |..+++++|+ +.+++.+++     .     .++++++.+|..+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4567899999999999999999986     5789999999 899988876     2     578999999998743    


Q ss_pred             ---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          188 ---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       188 ---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                         ..||+|++...+|++        ++++.+.|+|   ||++++.-.
T Consensus       158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~~~  194 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIPIE  194 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEEEc
Confidence               249999999988754        4678889999   898888754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.13  E-value=1.4e-10  Score=99.91  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=76.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC--C-C-CccceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE--A-I-SPADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~--~-~-p~~D~v~~  195 (296)
                      ++.+|||||||+|.++..+++..|..+++++|+ |.+++.|++ .        .+|++++.+|..+  + . ..||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            568999999999999999998777789999999 999988875 2        4799999999876  2 2 25999999


Q ss_pred             hhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 022515          196 KWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       196 ~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ....+..+...  ..+++++++++|+|   ||.+++.
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~  188 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ  188 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            65443332211  24789999999999   7776664

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.13  E-value=5.6e-11  Score=99.18  Aligned_cols=99  Identities=14%  Similarity=0.232  Sum_probs=80.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C------Ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I------SPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~------p~~  190 (296)
                      ..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++      ..++++++.+|+.+.   .      ..|
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            45678999999999999999999887 789999999 899888875      347899999998652   1      459


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      |+|++..     +......+++++.+.|+|   ||.+++.+...
T Consensus       147 D~v~~d~-----~~~~~~~~l~~~~~~L~p---gG~lv~~~~~~  182 (229)
T 2avd_A          147 DVAVVDA-----DKENCSAYYERCLQLLRP---GGILAVLRVLW  182 (229)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEE---EEEEEEECCSG
T ss_pred             cEEEECC-----CHHHHHHHHHHHHHHcCC---CeEEEEECCCc
Confidence            9999843     234456789999999999   88887766544

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.13  E-value=3.1e-10  Score=94.30  Aligned_cols=95  Identities=11%  Similarity=0.087  Sum_probs=79.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehhhhcc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKWILHD  201 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~  201 (296)
                      ..+.+|||||||+|-++..+.   |..+++++|+ +.+++.+++    ...+..+..+|... +.| .||++++.-++|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            567899999999999998877   8999999999 999998887    56888999999998 444 5999999999999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ..+.+....+ ++.++|++   + +++|.=
T Consensus       181 LE~q~~~~~~-~ll~aL~~---~-~vvVsf  205 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNT---P-RMAVSF  205 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBC---S-EEEEEE
T ss_pred             hhhhchhhHH-HHHHHhcC---C-CEEEEc
Confidence            9877655555 88899998   4 444443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.12  E-value=4.8e-11  Score=97.86  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=75.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CC--CCeeEEeccCCC-C-C---Cc-cceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DL--ANLKYVGGDMFE-A-I---SP-ADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~--~ri~~~~~D~~~-~-~---p~-~D~v~~  195 (296)
                      ++.+|||+|||+|.++..++.+. ..+++++|+ +.+++.|++     ..  ++++++.+|+.+ . .   .. ||+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            45799999999999999887764 358999999 999998876     22  689999999876 2 1   36 999999


Q ss_pred             hhhhccCCchHHHHHHHHH--HHhcccCCCCcEEEEEeee
Q 022515          196 KWILHDWNDEECVKILKKC--KEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~--~~aL~p~~~gG~lli~e~~  233 (296)
                      ...+| ..  ....+++.+  .+.|+|   ||.+++....
T Consensus       132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~~~~  165 (201)
T 2ift_A          132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVETEK  165 (201)
T ss_dssp             CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEEEES
T ss_pred             CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEEECC
Confidence            87754 33  345778888  567999   8887776543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.12  E-value=9.1e-11  Score=98.76  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=78.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C-C-------Cc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A-I-------SP  189 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~-~-------p~  189 (296)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      ..++++++.+|..+  + .       ..
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            34668999999999999999999987 789999999 999988875      34689999999875  2 2       35


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      ||+|++..     +......+++++.+.|+|   ||.+++.+..
T Consensus       148 fD~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d~~~  183 (237)
T 3c3y_A          148 YDFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYDNTL  183 (237)
T ss_dssp             EEEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEECTT
T ss_pred             cCEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEecCC
Confidence            99999853     334456899999999999   7776665443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.12  E-value=1.5e-10  Score=99.50  Aligned_cols=100  Identities=21%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC-CC-ccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA-IS-PADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~-~p-~~D~v~~~~vl  199 (296)
                      +.++.+|||+|||+|.++..+++..+..+++++|+ |.+++.+++     ...++.++.+|+.+. .+ .||+|++....
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence            45678999999999999999999988889999999 999988876     335789999999873 32 59999986432


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                            ...++++++.+.|+|   ||.+++.+....+
T Consensus       197 ------~~~~~l~~~~~~Lkp---gG~l~~s~~~~~~  224 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKD---RGVIHYHETVAEK  224 (272)
T ss_dssp             ------SGGGGHHHHHHHEEE---EEEEEEEEEEEGG
T ss_pred             ------cHHHHHHHHHHHcCC---CCEEEEEEcCccc
Confidence                  334689999999999   8988887765543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.11  E-value=6.7e-11  Score=98.75  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=77.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC------CCeEEeccc-hhHhhccCC-----C-----CCCeeEEeccCCCCCC--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP------KLECTCFDL-PHVVNGLDS-----D-----LANLKYVGGDMFEAIS--  188 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----~-----~~ri~~~~~D~~~~~p--  188 (296)
                      ..++.+|||||||+|.++..+++..+      ..+++++|+ +.+++.+++     .     ..+++++.+|..+..+  
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            45678999999999999999998765      369999999 999988876     1     4689999999987443  


Q ss_pred             -ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          189 -PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       189 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       .||+|++...+|+++        +++.+.|+|   ||++++.-
T Consensus       162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~~  194 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVPV  194 (227)
T ss_dssp             CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEEE
T ss_pred             CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEEE
Confidence             499999999998765        568888999   88888764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.11  E-value=4.9e-10  Score=94.48  Aligned_cols=100  Identities=15%  Similarity=0.167  Sum_probs=81.0

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC-C--
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI-S--  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~-p--  188 (296)
                      .++..+.  ..++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.+++      ..+++++..+|+.+.. +  
T Consensus        82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  157 (248)
T 2yvl_A           82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG  157 (248)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred             HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence            4455555  567789999999999999999998  779999999 899888875      2378999999998854 3  


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .||+|++     +.++.  ..+++++.++|+|   ||++++...
T Consensus       158 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~~~  191 (248)
T 2yvl_A          158 IFHAAFV-----DVREP--WHYLEKVHKSLME---GAPVGFLLP  191 (248)
T ss_dssp             CBSEEEE-----CSSCG--GGGHHHHHHHBCT---TCEEEEEES
T ss_pred             cccEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEEeC
Confidence            4999997     33443  3679999999999   999988774

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.10  E-value=5e-11  Score=106.35  Aligned_cols=95  Identities=19%  Similarity=0.231  Sum_probs=74.9

Q ss_pred             CCCCEEEEecCC------chHHHHHHHHH-CCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CC--------Cccc
Q 022515          129 EGLNSLVDVGGG------IGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AI--------SPAD  191 (296)
Q Consensus       129 ~~~~~vLDvGgG------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~--------p~~D  191 (296)
                      .+..+|||||||      +|..+..++++ +|+.+++++|+ +.+.   . ...+|+|+.+|+.+ ++        ..||
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~-~~~rI~fv~GDa~dlpf~~~l~~~d~sFD  290 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---V-DELRIRTIQGDQNDAEFLDRIARRYGPFD  290 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---G-CBTTEEEEECCTTCHHHHHHHHHHHCCEE
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---h-cCCCcEEEEecccccchhhhhhcccCCcc
Confidence            356899999999      66667777765 69999999999 7763   1 45789999999988 43        3499


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      +|++.. .|++++  ..+.|++++++|||   ||.+++.|..
T Consensus       291 lVisdg-sH~~~d--~~~aL~el~rvLKP---GGvlVi~Dl~  326 (419)
T 3sso_A          291 IVIDDG-SHINAH--VRTSFAALFPHVRP---GGLYVIEDMW  326 (419)
T ss_dssp             EEEECS-CCCHHH--HHHHHHHHGGGEEE---EEEEEEECGG
T ss_pred             EEEECC-cccchh--HHHHHHHHHHhcCC---CeEEEEEecc
Confidence            999864 566543  45889999999999   8888887765

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.09  E-value=9.6e-11  Score=101.28  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=78.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCCC---CC-ccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFEA---IS-PADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~~---~p-~~D~v~  194 (296)
                      .++.+|||||||+|..+..+++..|..+++++|+ |.+++.+++ .        .+|++++.+|..+.   .+ .||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            3568999999999999999998878889999999 999988876 1        47899999998762   23 599999


Q ss_pred             ehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEE
Q 022515          195 LKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       195 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +....+..+.+..  .+++++++++|+|   ||.+++.
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~  191 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ  191 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            9654433233222  5899999999999   7877765

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.08  E-value=8.4e-11  Score=103.01  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=74.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCCC----CCccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFEA----ISPADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~~----~p~~D~v~  194 (296)
                      .++.+|||||||+|..+..+++..|..+++++|+ |.+++.|++ .        .+|++++.+|..+.    ...||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            3567999999999999999999878899999999 999998876 1        47899999998762    22599999


Q ss_pred             ehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEEe
Q 022515          195 LKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       195 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +...-|.-+....  .+++++++++|+|   ||.+++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEE---EEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCC---CeEEEEEC
Confidence            8554332222221  5889999999999   77776643

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.08  E-value=4.9e-12  Score=106.57  Aligned_cols=135  Identities=14%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILH  200 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh  200 (296)
                      ++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++      ..++++++.+|+.+ +.+ .||+|++...+|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            6789999999999999999987  489999999 999988875      22689999999988 422 599999999998


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                      +.++..  ..+.+++++|+|   ||.+ +++.........            .   .+-.+....+++..++...|.-.+
T Consensus       156 ~~~~~~--~~~~~~~~~L~p---gG~~-i~~~~~~~~~~~------------~---~~lp~~~~~~~~~~~l~~~g~~~i  214 (241)
T 3gdh_A          156 GPDYAT--AETFDIRTMMSP---DGFE-IFRLSKKITNNI------------V---YFLPRNADIDQVASLAGPGGQVEI  214 (241)
T ss_dssp             SGGGGG--SSSBCTTTSCSS---CHHH-HHHHHHHHCSCE------------E---EEEETTBCHHHHHHTTCTTCCEEE
T ss_pred             Ccchhh--hHHHHHHhhcCC---ccee-HHHHHHhhCCce------------E---EECCCCCCHHHHHHHhccCCCEEE
Confidence            876654  367789999999   8874 333211110000            0   001223367788888888776655


Q ss_pred             EEEEcCC
Q 022515          281 KIIPILG  287 (296)
Q Consensus       281 ~~~~~~~  287 (296)
                      ......+
T Consensus       215 ~~~~~~~  221 (241)
T 3gdh_A          215 EQNFLNN  221 (241)
T ss_dssp             EEEEETT
T ss_pred             EehhhcC
Confidence            5444443

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.08  E-value=9.4e-11  Score=98.34  Aligned_cols=99  Identities=13%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC---CC------Cccc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE---AI------SPAD  191 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~---~~------p~~D  191 (296)
                      .+..+|||||||+|..+..+++..| +.+++++|+ +.+++.|++      ..+++++..+|..+   ..      ..||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            4567999999999999999999987 789999999 899888875      34689999999754   11      4599


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      +|++...     .+....+++++.+.|+|   ||.+++.+..+.
T Consensus       151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~~~~~~  186 (232)
T 3cbg_A          151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVIDNVLWH  186 (232)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEECTTGG
T ss_pred             EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEeCCCcC
Confidence            9998543     34456789999999999   888777665443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.08  E-value=2.8e-10  Score=94.79  Aligned_cols=94  Identities=17%  Similarity=0.162  Sum_probs=76.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC---C-------CCCeeEEeccCCCCC---Cccce
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS---D-------LANLKYVGGDMFEAI---SPADA  192 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~-------~~ri~~~~~D~~~~~---p~~D~  192 (296)
                      ..++.+|||||||+|..+..+++.. |..+++++|+ +.+++.+++   .       .++++++.+|.....   ..||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            4567899999999999999999885 6679999999 899988865   1       468999999987632   24999


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      |++...++++.        +++.+.|+|   ||++++...
T Consensus       155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~~~  183 (226)
T 1i1n_A          155 IHVGAAAPVVP--------QALIDQLKP---GGRLILPVG  183 (226)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEE---EEEEEEEES
T ss_pred             EEECCchHHHH--------HHHHHhcCC---CcEEEEEEe
Confidence            99988887543        578899999   898888653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.07  E-value=5.2e-10  Score=91.33  Aligned_cols=89  Identities=18%  Similarity=0.197  Sum_probs=67.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHH
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEEC  207 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~  207 (296)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++...+++++.+|+.+-...||+|++...+|++.+...
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~~  128 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHSD  128 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------C
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCchh
Confidence            35679999999999999999887 5557999999 999998876222899999999872246999999999998876544


Q ss_pred             HHHHHHHHHhc
Q 022515          208 VKILKKCKEAI  218 (296)
Q Consensus       208 ~~iL~~~~~aL  218 (296)
                      ..+++++.+.+
T Consensus       129 ~~~l~~~~~~~  139 (200)
T 1ne2_A          129 RAFIDKAFETS  139 (200)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHHhc
Confidence            57788887776

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.07  E-value=3.5e-10  Score=96.68  Aligned_cols=97  Identities=14%  Similarity=0.053  Sum_probs=71.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-CC------CCeeEE--eccCCC-CCCccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-DL------ANLKYV--GGDMFE-AISPADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~------~ri~~~--~~D~~~-~~p~~D~v~~~~  197 (296)
                      +.++.+|||||||+|.++..+++.   .+++++|+.+++..+++ ..      .++.++  .+|+.+ +...||+|++..
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~  148 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV  148 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence            556789999999999999988887   68999999336444432 11      278999  999987 433599999976


Q ss_pred             hhccCCch-----HHHHHHHHHHHhcccCCCCc--EEEEEe
Q 022515          198 ILHDWNDE-----ECVKILKKCKEAITSDGKKG--KVIIID  231 (296)
Q Consensus       198 vlh~~~d~-----~~~~iL~~~~~aL~p~~~gG--~lli~e  231 (296)
                      . +..+..     ....+|+.+.++|+|   ||  .+++-.
T Consensus       149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~kv  185 (265)
T 2oxt_A          149 G-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVKV  185 (265)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEEE
T ss_pred             c-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEEe
Confidence            6 443321     122489999999999   89  777644

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.07  E-value=1.1e-10  Score=102.63  Aligned_cols=99  Identities=13%  Similarity=0.112  Sum_probs=76.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---C------CCCeeEEeccCCCC---C-CccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---D------LANLKYVGGDMFEA---I-SPADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~------~~ri~~~~~D~~~~---~-p~~D~v~  194 (296)
                      .++.+|||||||+|..+..+++..|..+++++|+ |.+++.|++   .      .+|++++.+|..+.   . ..||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            3557999999999999999998778899999999 999988876   1      46899999998762   2 2599999


Q ss_pred             ehhhhccCCchHH--HHHHHHHHHhcccCCCCcEEEEE
Q 022515          195 LKWILHDWNDEEC--VKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       195 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +...-+.-+.+..  .+++++++++|+|   ||.+++.
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  229 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ  229 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            8543221112221  5889999999999   7777664

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.07  E-value=3.2e-10  Score=97.48  Aligned_cols=97  Identities=15%  Similarity=0.026  Sum_probs=71.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC-CC------CCeeEE--eccCCC-CCCccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS-DL------ANLKYV--GGDMFE-AISPADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~------~ri~~~--~~D~~~-~~p~~D~v~~~~  197 (296)
                      +.++.+|||||||+|.++..++++   .+++++|+.+++..+++ ..      .++.++  .+|+.+ +...||+|++..
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~  156 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI  156 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence            456789999999999999998887   58999999336544432 11      278999  999987 433599999976


Q ss_pred             hhccCCch-----HHHHHHHHHHHhcccCCCCc--EEEEEe
Q 022515          198 ILHDWNDE-----ECVKILKKCKEAITSDGKKG--KVIIID  231 (296)
Q Consensus       198 vlh~~~d~-----~~~~iL~~~~~aL~p~~~gG--~lli~e  231 (296)
                      . +..+..     ....+|+.+.++|+|   ||  .+++..
T Consensus       157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~~  193 (276)
T 2wa2_A          157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVKV  193 (276)
T ss_dssp             C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEEE
T ss_pred             C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEEe
Confidence            6 433221     122479999999999   89  777643

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.06  E-value=1.1e-10  Score=101.02  Aligned_cols=104  Identities=16%  Similarity=0.261  Sum_probs=77.1

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS  188 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p  188 (296)
                      ...+++.+.  ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.+++      ..++++++.+|+.+ +.+
T Consensus        17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            455666665  5677899999999999999999984  58999999 899888765      12689999999998 777


Q ss_pred             ccceeEehhhhccCCchHHHHHHH--------------HH--HHhcccCCCCcEEE
Q 022515          189 PADAVLLKWILHDWNDEECVKILK--------------KC--KEAITSDGKKGKVI  228 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~--------------~~--~~aL~p~~~gG~ll  228 (296)
                      .||+|+++. -++|..+....+|.              ++  +++++|   ||+++
T Consensus        93 ~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~y  144 (285)
T 1zq9_A           93 FFDTCVANL-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKLY  144 (285)
T ss_dssp             CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTTC
T ss_pred             hhcEEEEec-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCccc
Confidence            899998843 33344444334443              22  368899   88653

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.06  E-value=6.8e-11  Score=111.97  Aligned_cols=104  Identities=13%  Similarity=0.157  Sum_probs=84.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---C--CCCeeEEeccCCC---CC-C-ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---D--LANLKYVGGDMFE---AI-S-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~--~~ri~~~~~D~~~---~~-p-~~D~v~~~  196 (296)
                      +.++.+|||||||.|.++..|++.  +.++|++|+ +.+++.|+.   .  .-+|+|.+++..+   .. + .||+|++.
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            345679999999999999999997  789999999 999988875   2  2469999998875   22 2 59999999


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      .+|||.++++...-+.++.+.|++   +++.+++..+..+
T Consensus       142 e~~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~~~~~~e  178 (569)
T 4azs_A          142 SVFHHIVHLHGIDEVKRLLSRLAD---VTQAVILELAVKE  178 (569)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHHHH---HSSEEEEECCCTT
T ss_pred             cchhcCCCHHHHHHHHHHHHHhcc---ccceeeEEecccc
Confidence            999999988755566678888888   7888887765544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.06  E-value=1e-10  Score=101.04  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=75.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------------CCCeeEEeccCCCC---CCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------------LANLKYVGGDMFEA---ISP  189 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------------~~ri~~~~~D~~~~---~p~  189 (296)
                      .++.+|||||||+|.++..+++. |..+++++|+ |.+++.|++ .              .+|++++.+|..+-   ...
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            35679999999999999999998 8889999999 999988765 2              46899999997652   235


Q ss_pred             cceeEehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 022515          190 ADAVLLKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ||+|++....+..+...  ..+++++++++|+|   ||.+++.
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~  192 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ  192 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            99999865543222222  25789999999999   7777665

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.06  E-value=1.4e-10  Score=102.46  Aligned_cols=99  Identities=17%  Similarity=0.141  Sum_probs=77.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC---CC--Ccccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE---AI--SPADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~---~~--p~~D~v  193 (296)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .        ..|++++.+|..+   ..  ..||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4568999999999999999999888889999999 999998876 1        4689999999865   22  259999


Q ss_pred             EehhhhccCCchH--HHHHHHHHHHhcccCCCCcEEEEE
Q 022515          194 LLKWILHDWNDEE--CVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       194 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ++....+..+.+.  ..+++++++++|+|   ||.+++.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  234 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ  234 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence            9854321111111  35899999999999   7777664

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.05  E-value=7.3e-11  Score=103.02  Aligned_cols=100  Identities=16%  Similarity=0.106  Sum_probs=75.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC--C-C-CccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE--A-I-SPADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~--~-~-p~~D~v~  194 (296)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.|++ .        .+|++++.+|..+  + . ..||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4568999999999999999999888889999999 999988876 1        5789999999865  2 2 2599999


Q ss_pred             ehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          195 LKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       195 ~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +....+..+..  ...+++++++++|+|   ||.+++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEec
Confidence            86544322221  124789999999999   77776644

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.05  E-value=2.7e-10  Score=93.47  Aligned_cols=97  Identities=11%  Similarity=0.122  Sum_probs=74.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC--CCC--ccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE--AIS--PADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~--~~p--~~D~v~~~~vl  199 (296)
                      ++.+|||+|||+|.++..++++.. .+++++|+ +.+++.|++     ..++++++.+|+.+  +.+  .||+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            457999999999999998887743 48999999 999998876     22689999999876  322  49999997765


Q ss_pred             ccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 022515          200 HDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMI  233 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~  233 (296)
                      | ...  ...+++.+.+  .|+|   ||.+++....
T Consensus       133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~~~~  162 (202)
T 2fpo_A          133 R-RGL--LEETINLLEDNGWLAD---EALIYVESEV  162 (202)
T ss_dssp             S-TTT--HHHHHHHHHHTTCEEE---EEEEEEEEEG
T ss_pred             C-CCc--HHHHHHHHHhcCccCC---CcEEEEEECC
Confidence            4 332  3467777766  4999   7877766543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.04  E-value=2.7e-10  Score=92.54  Aligned_cols=97  Identities=15%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC---------CeEEeccchhHhhccCCCCCCeeEE-eccCCC-C--------CC
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK---------LECTCFDLPHVVNGLDSDLANLKYV-GGDMFE-A--------IS  188 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~ri~~~-~~D~~~-~--------~p  188 (296)
                      +.++.+|||||||+|.++..++++++.         .+++++|+.++.     ...++++. .+|+.+ +        .+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----PLEGATFLCPADVTDPRTSQRILEVLP   94 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----CCTTCEEECSCCTTSHHHHHHHHHHSG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----cCCCCeEEEeccCCCHHHHHHHHHhcC
Confidence            456789999999999999999999865         799999994321     23568888 899876 2        22


Q ss_pred             --ccceeEehhhhcc----CCchH-----HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          189 --PADAVLLKWILHD----WNDEE-----CVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       189 --~~D~v~~~~vlh~----~~d~~-----~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                        .||+|++...+|.    ..+..     ...+++++.++|+|   ||++++...
T Consensus        95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~  146 (196)
T 2nyu_A           95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCKTW  146 (196)
T ss_dssp             GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEEec
Confidence              4999998654432    12221     14789999999999   898887654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.04  E-value=4.7e-10  Score=91.23  Aligned_cols=102  Identities=12%  Similarity=0.309  Sum_probs=73.2

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCC-----------
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAI-----------  187 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~-----------  187 (296)
                      ++.+.+. .++++.+|||+|||+|.++..++++  ..+++++|+.++    . ...+++++.+|+.+..           
T Consensus        15 ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~-~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           15 FLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----E-EIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             HHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----C-CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             HHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----c-cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            4455554 2467789999999999999999888  779999999332    1 3467999999998731           


Q ss_pred             ---CccceeEehhhhcc---------CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          188 ---SPADAVLLKWILHD---------WNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       188 ---p~~D~v~~~~vlh~---------~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                         +.||+|++......         ...+....+|+.+.+.|+|   ||++++..
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k~  139 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLKQ  139 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEEE
Confidence               36999998432110         0112235789999999999   88877544

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.02  E-value=1.6e-09  Score=99.74  Aligned_cols=104  Identities=16%  Similarity=0.188  Sum_probs=82.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC--ccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS--PADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p--~~D~v~~  195 (296)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++     ...+++++.+|+.+ +  ++  .||+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            556789999999999999999999877 79999999 888877765     34579999999987 3  33  4999996


Q ss_pred             ------hhhhccCCch-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          196 ------KWILHDWNDE-------EC-------VKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 ------~~vlh~~~d~-------~~-------~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                            ..+++..++.       +.       .++|+++.+.|+|   ||++++.+...
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~tcs~  392 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYTTCSI  392 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeCCC
Confidence                  4455554442       11       5789999999999   89988877544

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.02  E-value=6.6e-10  Score=94.85  Aligned_cols=90  Identities=13%  Similarity=0.053  Sum_probs=74.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCCCCCccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFEAISPADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~~~p~~D~v~~~~v  198 (296)
                      ..+.+|||||||+|..+..+++. + .+++++|+ +.+++.|++ .        .+|++++.+|..+-...||+|++.  
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d--  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL--  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence            35679999999999999999988 7 89999999 999999986 1        368999999988733569999985  


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                         .+++.  .++++++++|+|   ||.+++.
T Consensus       147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~  170 (262)
T 2cmg_A          147 ---QEPDI--HRIDGLKRMLKE---DGVFISV  170 (262)
T ss_dssp             ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred             ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence               34443  489999999999   7877764

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.02  E-value=1.9e-10  Score=100.01  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=74.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--------CCCeeEEeccCCC--C-C-CccceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--------LANLKYVGGDMFE--A-I-SPADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--------~~ri~~~~~D~~~--~-~-p~~D~v~~  195 (296)
                      .+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .        .+|++++.+|..+  + . ..||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            457999999999999999999878889999999 999988776 2        5799999999765  2 2 24999998


Q ss_pred             hhhhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          196 KWILHDWNDE---ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       196 ~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ...-+.....   ...+++++++++|+|   ||.+++.
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~  204 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE  204 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence            4332201110   125789999999999   7777664

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.01  E-value=5e-10  Score=97.71  Aligned_cols=96  Identities=13%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-----hhHhhccCC-C--CCCeeEEec-cCCC-CCCccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-----PHVVNGLDS-D--LANLKYVGG-DMFE-AISPADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~-~--~~ri~~~~~-D~~~-~~p~~D~v~~~~  197 (296)
                      +.++.+|||||||+|.++..++++   .+++++|+     +.+++.... .  .++++++.+ |+.. +...||+|++..
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence            456789999999999999998887   47899997     444333221 1  267999999 9887 444699999966


Q ss_pred             hhc---cCCchH-HHHHHHHHHHhcccCCCCcEEEE
Q 022515          198 ILH---DWNDEE-CVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       198 vlh---~~~d~~-~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ..+   ...+.. ...+|+.+.++|+|   ||.+++
T Consensus       157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~  189 (305)
T 2p41_A          157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV  189 (305)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred             ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEE
Confidence            543   222222 23689999999999   887665

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.01  E-value=1.8e-09  Score=88.46  Aligned_cols=89  Identities=20%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCCccceeEehhhhccCC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAISPADAVLLKWILHDWN  203 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~  203 (296)
                      .++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++    ..-+++++.+|+.+-...||+|++.-.+|.+.
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCcccc
Confidence            456799999999999999998873 347999999 899988775    11289999999987323699999988888776


Q ss_pred             chHHHHHHHHHHHhc
Q 022515          204 DEECVKILKKCKEAI  218 (296)
Q Consensus       204 d~~~~~iL~~~~~aL  218 (296)
                      ......+++++.+.+
T Consensus       127 ~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          127 KHADRPFLLKAFEIS  141 (207)
T ss_dssp             TTTTHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHhc
Confidence            555567888888776

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.98  E-value=1.1e-09  Score=98.36  Aligned_cols=121  Identities=16%  Similarity=0.118  Sum_probs=90.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWI  198 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~v  198 (296)
                      .++.+|||+|||+|.+++.++...+..+++++|+ +.+++.|++      ..+++++..+|+.+ +.+  .||+|++.-.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP  295 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP  295 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence            4668999999999999999999987779999999 999998876      23689999999998 543  5999999543


Q ss_pred             hccCC-----chH-HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHH
Q 022515          199 LHDWN-----DEE-CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF  272 (296)
Q Consensus       199 lh~~~-----d~~-~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll  272 (296)
                      .+...     .++ -.++++.+++.| +    |+++++..                               +.+.+++.+
T Consensus       296 yg~r~~~~~~~~~ly~~~~~~l~r~l-~----g~~~~i~~-------------------------------~~~~~~~~~  339 (373)
T 3tm4_A          296 YGLKIGKKSMIPDLYMKFFNELAKVL-E----KRGVFITT-------------------------------EKKAIEEAI  339 (373)
T ss_dssp             CC------CCHHHHHHHHHHHHHHHE-E----EEEEEEES-------------------------------CHHHHHHHH
T ss_pred             CCcccCcchhHHHHHHHHHHHHHHHc-C----CeEEEEEC-------------------------------CHHHHHHHH
Confidence            32211     111 257888899988 5    44444321                               345667788


Q ss_pred             HhcCCceeEEEEc
Q 022515          273 TYAGFSDYKIIPI  285 (296)
Q Consensus       273 ~~aGf~~~~~~~~  285 (296)
                      .+.||+..+..++
T Consensus       340 ~~~G~~~~~~~~~  352 (373)
T 3tm4_A          340 AENGFEIIHHRVI  352 (373)
T ss_dssp             HHTTEEEEEEEEE
T ss_pred             HHcCCEEEEEEEE
Confidence            9999998887776

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.97  E-value=1.9e-09  Score=92.38  Aligned_cols=121  Identities=14%  Similarity=0.094  Sum_probs=91.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-CccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-SPADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-p~~D~v~~~~v  198 (296)
                      ..++.+|||+|||+|.+++.++++. ..+++++|+ |..++.+++      ..+++++..+|..+ .. ..||.|++...
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p  201 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence            4578899999999999999998873 568999999 998888765      57899999999988 32 35999987532


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                            ..+..+|..+.+.|+|   ||.|.+.+....+...                      ....+.++++.++.|++
T Consensus       202 ------~~~~~~l~~a~~~lk~---gG~ih~~~~~~e~~~~----------------------~~~~e~i~~~~~~~g~~  250 (278)
T 3k6r_A          202 ------VRTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD  250 (278)
T ss_dssp             ------SSGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred             ------CcHHHHHHHHHHHcCC---CCEEEEEeeecccccc----------------------hhHHHHHHHHHHHcCCc
Confidence                  1234678889999999   8887776655432211                      11456677888899987


Q ss_pred             ee
Q 022515          279 DY  280 (296)
Q Consensus       279 ~~  280 (296)
                      +.
T Consensus       251 v~  252 (278)
T 3k6r_A          251 VE  252 (278)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.97  E-value=9.8e-10  Score=98.20  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=72.3

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~  201 (296)
                      ++.+|||||||+|.+++..++.. ..+++++|..++++.|++      ..++|+++.+|+.+ +.| .+|+|++-.+-+.
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~  161 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG  161 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence            46799999999999987666653 348999999557777765      67999999999988 666 5999998544333


Q ss_pred             CCch-HHHHHHHHHHHhcccCCCCcEEE
Q 022515          202 WNDE-ECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       202 ~~d~-~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                      ...+ ....++....+.|+|   ||.++
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp---~G~~i  186 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKE---GGLLL  186 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred             ccccchhhhHHHHHHhhCCC---CceEC
Confidence            3333 345778888899999   77765

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.97  E-value=2.7e-09  Score=94.15  Aligned_cols=98  Identities=16%  Similarity=0.133  Sum_probs=74.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCC-CeeEEeccCCCC-------CCccceeE
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLA-NLKYVGGDMFEA-------ISPADAVL  194 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~D~~~~-------~p~~D~v~  194 (296)
                      ++.+|||+|||+|.++..+++..  .+++++|+ +.+++.+++      ..+ +++++.+|+++.       ...||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            45799999999999999999864  49999999 999988876      233 599999999872       12599999


Q ss_pred             ehhhh---------ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          195 LKWIL---------HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       195 ~~~vl---------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      +.--.         +++ .+....+++++.+.|+|   ||.+++....
T Consensus       231 ~dPP~~~~~~~~~~~~~-~~~~~~ll~~~~~~Lkp---gG~lli~~~~  274 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSP---KALGLVLTAY  274 (332)
T ss_dssp             ECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred             ECCccccCCchHHHHHH-HHHHHHHHHHHHHhcCc---CcEEEEEECC
Confidence            83210         111 22345889999999999   8887766543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.96  E-value=9.2e-10  Score=94.65  Aligned_cols=104  Identities=13%  Similarity=0.134  Sum_probs=78.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-----C-cccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-----S-PADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-----p-~~D~v  193 (296)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++     ...+++++.+|+.+ +.     + .||+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            456789999999999999999998877 79999999 888887765     23589999999876 32     3 59999


Q ss_pred             Eeh------hhhcc---CCc-------hHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          194 LLK------WILHD---WND-------EECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       194 ~~~------~vlh~---~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      ++.      .+++.   |..       +...++|+++.+.|+|   ||++++.....
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~stcs~  214 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYSTCSM  214 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEEESCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCC
Confidence            986      23321   111       1235899999999999   88887766544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.89  E-value=3e-09  Score=97.53  Aligned_cols=103  Identities=14%  Similarity=0.119  Sum_probs=78.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEe-
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLL-  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~-  195 (296)
                      ..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++     ... +.++.+|..+ +  .+ .||+|++ 
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence            557789999999999999999998765 69999999 888887765     234 9999999876 3  23 4999995 


Q ss_pred             -----hhhhc-------cCCchHH-------HHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          196 -----KWILH-------DWNDEEC-------VKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 -----~~vlh-------~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                           ..+++       .|..++.       .++|+++.+.|+|   ||+|+......
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvysTCs~  232 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYSTCTF  232 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEEESCC
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEeccC
Confidence                 12222       2333222       6799999999999   88887765443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.88  E-value=6.4e-09  Score=89.72  Aligned_cols=115  Identities=12%  Similarity=0.040  Sum_probs=81.4

Q ss_pred             cCCCCEEEEecC------CchHHHHHHHHHCC-CCeEEeccc-hhHhhccCCCCCCeeE-EeccCCC-CCC-ccceeEeh
Q 022515          128 FEGLNSLVDVGG------GIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDSDLANLKY-VGGDMFE-AIS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGg------G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~ri~~-~~~D~~~-~~p-~~D~v~~~  196 (296)
                      +.++.+|||+||      |+|.  ..+++..| +.+++++|+ +. +       .++++ +.+|+.+ +.+ .||+|++.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~~v~~~i~gD~~~~~~~~~fD~Vvsn  130 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------SDADSTLIGDCATVHTANKWDLIISD  130 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------CSSSEEEESCGGGCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------CCCEEEEECccccCCccCcccEEEEc
Confidence            567789999999      5587  44566666 689999999 55 2       36889 9999988 444 59999985


Q ss_pred             hhhcc-----CC----chHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          197 WILHD-----WN----DEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       197 ~vlh~-----~~----d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                      ...+.     .+    .+....+|+.++++|+|   ||++++......                            ...+
T Consensus       131 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~~~~~~----------------------------~~~~  179 (290)
T 2xyq_A          131 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVKITEHS----------------------------WNAD  179 (290)
T ss_dssp             CCCCC---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEEECSSS----------------------------CCHH
T ss_pred             CCccccccccccccchHHHHHHHHHHHHHhcCC---CcEEEEEEeccC----------------------------CHHH
Confidence            32111     01    12245789999999999   888887542110                            2246


Q ss_pred             HHHHHHhcCCceeEEE
Q 022515          268 WTKLFTYAGFSDYKII  283 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~  283 (296)
                      +.+++++.||..+++.
T Consensus       180 l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          180 LYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             HHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHcCCcEEEEE
Confidence            7788888898877665

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.88  E-value=9.3e-09  Score=93.57  Aligned_cols=107  Identities=10%  Similarity=0.050  Sum_probs=78.7

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-C-Cccce
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-I-SPADA  192 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-~-p~~D~  192 (296)
                      +..+++.+.  ..+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.|    .+++++.+|+++. . +.||+
T Consensus        28 ~~~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~~~~~fD~  101 (421)
T 2ih2_A           28 VDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDL  101 (421)
T ss_dssp             HHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEE
T ss_pred             HHHHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcCccCCCCE
Confidence            344444444  3345699999999999999999987 6789999999 8888766    6799999999883 2 35999


Q ss_pred             eEehhhh----------ccCCchH-----------------HHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          193 VLLKWIL----------HDWNDEE-----------------CVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       193 v~~~~vl----------h~~~d~~-----------------~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      |+++=-.          ++.+++.                 ...+++++.+.|+|   ||+++++-.
T Consensus       102 Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i~p  165 (421)
T 2ih2_A          102 ILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVVP  165 (421)
T ss_dssp             EEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             EEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEEEC
Confidence            9994111          1122221                 12679999999999   898887653

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.87  E-value=1.7e-09  Score=94.10  Aligned_cols=90  Identities=13%  Similarity=0.235  Sum_probs=66.0

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCCc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AISP  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p~  189 (296)
                      ...+++.+.  ..++.+|||||||+|.++..+++.  ..+++++|+ +.+++.+++     ..++++++.+|+.+ +.+.
T Consensus        31 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~  106 (299)
T 2h1r_A           31 LDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK  106 (299)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence            345555555  567789999999999999999987  568999999 899888765     23689999999998 6667


Q ss_pred             cceeEehhhhccCCchHHHHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKIL  211 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL  211 (296)
                      ||+|++.- -+++..+....++
T Consensus       107 ~D~Vv~n~-py~~~~~~~~~ll  127 (299)
T 2h1r_A          107 FDVCTANI-PYKISSPLIFKLI  127 (299)
T ss_dssp             CSEEEEEC-CGGGHHHHHHHHH
T ss_pred             CCEEEEcC-CcccccHHHHHHH
Confidence            99998854 4456666555666

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.85  E-value=5.1e-09  Score=88.39  Aligned_cols=78  Identities=10%  Similarity=0.264  Sum_probs=59.7

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC-cc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS-PA  190 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p-~~  190 (296)
                      ...+++.+.  ..++.+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++ +.
T Consensus        19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   94 (244)
T 1qam_A           19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ   94 (244)
T ss_dssp             HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence            445555555  5677899999999999999999985  68999999 899988875   23689999999988 655 23


Q ss_pred             ceeEehhh
Q 022515          191 DAVLLKWI  198 (296)
Q Consensus       191 D~v~~~~v  198 (296)
                      +..++++.
T Consensus        95 ~~~vv~nl  102 (244)
T 1qam_A           95 SYKIFGNI  102 (244)
T ss_dssp             CCEEEEEC
T ss_pred             CeEEEEeC
Confidence            33444433

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.82  E-value=5.9e-09  Score=95.30  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=81.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-C--CC--ccceeEe--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-A--IS--PADAVLL--  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~--~p--~~D~v~~--  195 (296)
                      ..++.+|||+|||+|..+.++++..++.+++++|+ +..++.+++    ..-+++++.+|+.+ +  ++  .||+|++  
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            45678999999999999999999998899999999 888877765    33468999999987 3  33  4999986  


Q ss_pred             ----hhhhccCCch-------HH-------HHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          196 ----KWILHDWNDE-------EC-------VKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 ----~~vlh~~~d~-------~~-------~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                          ..+++..++.       +.       .++|+++.+.|+|   ||++++.+...
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvystcs~  377 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCSV  377 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESCC
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEECCC
Confidence                3455544432       11       4889999999999   89888877544

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.81  E-value=2.1e-09  Score=90.80  Aligned_cols=106  Identities=13%  Similarity=0.166  Sum_probs=75.4

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC---
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS---  188 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p---  188 (296)
                      ...+++.+.  ..++.+|||||||+|.++..+++..  .+++++|+ +.+++.+++   ..++++++.+|+.+ +.+   
T Consensus        18 ~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   93 (245)
T 1yub_A           18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCC
Confidence            455666665  5677899999999999999999984  79999999 899998876   24689999999998 554   


Q ss_pred             ccceeEehhhhccCCchHHH----------HHH----HHHHHhcccCCCCcEEEEEe
Q 022515          189 PADAVLLKWILHDWNDEECV----------KIL----KKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~----------~iL----~~~~~aL~p~~~gG~lli~e  231 (296)
                      .| .|++ +.-++...+...          .++    +.+.+.|+|   ||++.+..
T Consensus        94 ~f-~vv~-n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~~  145 (245)
T 1yub_A           94 RY-KIVG-NIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLLL  145 (245)
T ss_dssp             EE-EEEE-ECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHHT
T ss_pred             Cc-EEEE-eCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhhh
Confidence            36 3333 222222222111          223    668889999   88876654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.80  E-value=7.1e-09  Score=94.92  Aligned_cols=104  Identities=15%  Similarity=0.205  Sum_probs=77.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~~  196 (296)
                      ..++.+|||+|||+|..+.++++..++ .+++++|+ +..++.+++     ...++.++.+|..+ +  .+ .||+|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            567789999999999999999998654 68999999 888877765     34579999999876 2  23 49999872


Q ss_pred             h------hhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          197 W------ILH-------DWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       197 ~------vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      -      ++.       .|..++       ..++|+++.+.|+|   ||+|+......
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYsTCs~  237 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYSTCTF  237 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEEESCC
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEeec
Confidence            1      222       122211       13789999999999   88887765443

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.80  E-value=3.8e-09  Score=93.77  Aligned_cols=99  Identities=11%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCC-----CeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC--CccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPK-----LECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI--SPADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~--p~~D~v~~~~  197 (296)
                      +..+|||+|||+|.++..+++..+.     .+++++|+ +.+++.|+.    ...++++..+|.+.+.  ..||+|++.-
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL  209 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence            4579999999999999999988764     68999999 899888875    2237899999998843  3599999987


Q ss_pred             hhccCCchHH----------------HHHHHHHHHhcccCCCCcEEEEEe
Q 022515          198 ILHDWNDEEC----------------VKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       198 vlh~~~d~~~----------------~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .++.++.++.                ..+++++.+.|+|   ||+++++.
T Consensus       210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v~  256 (344)
T 2f8l_A          210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLV  256 (344)
T ss_dssp             CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEEE
Confidence            7666654332                2589999999999   88887766

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.79  E-value=2.3e-08  Score=92.42  Aligned_cols=103  Identities=16%  Similarity=0.238  Sum_probs=79.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEeh--
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLLK--  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~~--  196 (296)
                      ++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++     ...++.++.+|..+ +  .+ .||+|++.  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            678999999999999999999875 479999999 888887765     34579999999987 3  33 49999971  


Q ss_pred             ----hhhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          197 ----WILH-------DWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       197 ----~vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                          .+++       +|..++       ..++|+++.+.|+|   ||+|+.......
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~LvysTcs~~  250 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYSTCTLN  250 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESCCS
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEecccCC
Confidence                2333       233222       24789999999999   888887765443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.73  E-value=8.6e-09  Score=92.85  Aligned_cols=99  Identities=14%  Similarity=0.090  Sum_probs=72.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCC-CeeEEeccCCC--C-C---C-cccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLA-NLKYVGGDMFE--A-I---S-PADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~-ri~~~~~D~~~--~-~---p-~~D~v  193 (296)
                      .++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++      ..+ +++|+.+|.++  + .   + .||+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            456799999999999999999863 348999999 999988876      233 89999999876  2 1   2 59999


Q ss_pred             Eehhhh-----ccCCc--hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          194 LLKWIL-----HDWND--EECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       194 ~~~~vl-----h~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++.-..     ++..+  +...++++.+.+.|+|   ||.+++..
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~~  331 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST  331 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence            983211     12221  2334678889999999   77766654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.73  E-value=5.7e-08  Score=88.85  Aligned_cols=119  Identities=14%  Similarity=0.170  Sum_probs=82.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC-----C--ccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI-----S--PADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~-----p--~~D~v~  194 (296)
                      ..+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ...+++|+.+|+.+..     +  .||+|+
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv  361 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  361 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEE
Confidence            456679999999999999999987  679999999 999988875     2358999999998732     1  499999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY  274 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~  274 (296)
                      +     +-|...+..+++.+.+ ++|   ++.+++...         |.                    |...-...|.+
T Consensus       362 ~-----dPPr~g~~~~~~~l~~-~~p---~~ivyvsc~---------p~--------------------tlard~~~l~~  403 (433)
T 1uwv_A          362 L-----DPARAGAAGVMQQIIK-LEP---IRIVYVSCN---------PA--------------------TLARDSEALLK  403 (433)
T ss_dssp             E-----CCCTTCCHHHHHHHHH-HCC---SEEEEEESC---------HH--------------------HHHHHHHHHHH
T ss_pred             E-----CCCCccHHHHHHHHHh-cCC---CeEEEEECC---------hH--------------------HHHhhHHHHHH
Confidence            8     3333223345655543 677   555544221         00                    11112345677


Q ss_pred             cCCceeEEEEcC
Q 022515          275 AGFSDYKIIPIL  286 (296)
Q Consensus       275 aGf~~~~~~~~~  286 (296)
                      .||+..++.++.
T Consensus       404 ~Gy~~~~~~~~d  415 (433)
T 1uwv_A          404 AGYTIARLAMLD  415 (433)
T ss_dssp             TTCEEEEEEEEC
T ss_pred             CCcEEEEEEEec
Confidence            899998887764

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.72  E-value=8.9e-09  Score=92.71  Aligned_cols=98  Identities=14%  Similarity=0.120  Sum_probs=74.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC---C---C-ccceeEeh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA---I---S-PADAVLLK  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~---~---p-~~D~v~~~  196 (296)
                      ++.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ..++++++.+|.++.   .   + .||+|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            5679999999999999999998  668999999 999988876     234499999998772   1   2 59999983


Q ss_pred             hhhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          197 WILHDWND-------EECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       197 ~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ---+..+.       .....+++++.+.|+|   ||.+++...
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~~~  326 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATASC  326 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence            21111110       3346789999999999   888777654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.72  E-value=1.2e-08  Score=92.37  Aligned_cols=98  Identities=10%  Similarity=0.018  Sum_probs=74.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------C-CCCeeEEeccCCCC-------CCcccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------D-LANLKYVGGDMFEA-------ISPADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~D~~~~-------~p~~D~v  193 (296)
                      .++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.|++      . .++++++.+|+++.       ...||+|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            456899999999999999999874 458999999 899988876      2 23899999998872       1259999


Q ss_pred             Eehhhh--------ccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          194 LLKWIL--------HDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       194 ~~~~vl--------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++.-..        +.. ......++.++.+.|+|   ||.+++..
T Consensus       298 i~dpP~~~~~~~~~~~~-~~~~~~~l~~~~~~Lkp---gG~l~~~~  339 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGA-CRGYKDINMLAIQLLNE---GGILLTFS  339 (396)
T ss_dssp             EECCSSTTTCSSSSSCC-CTHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EECCCCCCCChhHHHHH-HHHHHHHHHHHHHhcCC---CcEEEEEe
Confidence            984211        111 13456889999999999   77777655

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.72  E-value=1.5e-08  Score=89.60  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=75.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCccceeEehhhhcc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISPADAVLLKWILHD  201 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~  201 (296)
                      .++.+|||+|||+|.++.. ++  ...+++++|+ +.+++.+++      ..++++++.+|.++....||+|++.-    
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dp----  266 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNL----  266 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECC----
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECC----
Confidence            4678999999999999998 76  4779999999 999988876      34689999999988445699999842    


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                       | .....+++.+.+.|+|   ||.+++.+...
T Consensus       267 -P-~~~~~~l~~~~~~L~~---gG~l~~~~~~~  294 (336)
T 2yx1_A          267 -P-KFAHKFIDKALDIVEE---GGVIHYYTIGK  294 (336)
T ss_dssp             -T-TTGGGGHHHHHHHEEE---EEEEEEEEEES
T ss_pred             -c-HhHHHHHHHHHHHcCC---CCEEEEEEeec
Confidence             1 1123789999999999   88888777543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.69  E-value=3.2e-08  Score=85.63  Aligned_cols=77  Identities=12%  Similarity=0.231  Sum_probs=63.8

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc--
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP--  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~--  189 (296)
                      ...+++.+.  ..+..+|||||||+|.++..+++.  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +++.  
T Consensus        39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence            455666665  667789999999999999999998  578999999 999988876   35789999999998 6664  


Q ss_pred             cceeEehh
Q 022515          190 ADAVLLKW  197 (296)
Q Consensus       190 ~D~v~~~~  197 (296)
                      ||+|+.+-
T Consensus       115 fD~Iv~Nl  122 (295)
T 3gru_A          115 FNKVVANL  122 (295)
T ss_dssp             CSEEEEEC
T ss_pred             ccEEEEeC
Confidence            99998653

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.67  E-value=4.7e-08  Score=88.14  Aligned_cols=113  Identities=9%  Similarity=-0.011  Sum_probs=80.8

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC--------------------------------------CeEE
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK--------------------------------------LECT  158 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~--------------------------------------~~~~  158 (296)
                      +..++....  +.+..+|||.+||+|.++++.+....+                                      .+++
T Consensus       190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  267 (393)
T 3k0b_A          190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII  267 (393)
T ss_dssp             HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence            344555555  567789999999999999998875433                                      5699


Q ss_pred             eccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhh--hccCCchHHHHHHHHHHHhcccCCCCcEE
Q 022515          159 CFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWI--LHDWNDEECVKILKKCKEAITSDGKKGKV  227 (296)
Q Consensus       159 ~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~v--lh~~~d~~~~~iL~~~~~aL~p~~~gG~l  227 (296)
                      ++|+ +.+++.|++      ..++|+++.+|+.+ +.+ .||+|+++=-  ...-..++...+.+.+.+.|++ -+|+++
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~  346 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSV  346 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEE
Confidence            9999 999998876      45689999999998 444 5999998622  1111123445666766666665 248888


Q ss_pred             EEEee
Q 022515          228 IIIDM  232 (296)
Q Consensus       228 li~e~  232 (296)
                      +|+..
T Consensus       347 ~iit~  351 (393)
T 3k0b_A          347 YVLTS  351 (393)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.66  E-value=2.3e-08  Score=90.43  Aligned_cols=99  Identities=17%  Similarity=0.108  Sum_probs=75.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC-------CCccceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA-------ISPADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~-------~p~~D~v~~  195 (296)
                      ++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++      ..++++++.+|+++.       ...||+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            6789999999999999999986 3458999999 899988876      223899999998762       125999998


Q ss_pred             hhhhccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          196 KWILHDWND-------EECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       196 ~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .-..+..+.       .....+++++.+.|+|   ||.+++...
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~~~  336 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCSC  336 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEEEC
Confidence            421111111       3456789999999999   888777664

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.65  E-value=1.3e-07  Score=84.85  Aligned_cols=114  Identities=14%  Similarity=0.045  Sum_probs=83.3

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC--------------------------------------CeE
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK--------------------------------------LEC  157 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~--------------------------------------~~~  157 (296)
                      ++..++....  +.+...|+|.+||+|.++++.+....+                                      .++
T Consensus       182 LAaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          182 MAAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            3444555555  567789999999999999998875433                                      569


Q ss_pred             Eeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhh--hccCCchHHHHHHHHHHHhcccCCCCcE
Q 022515          158 TCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWI--LHDWNDEECVKILKKCKEAITSDGKKGK  226 (296)
Q Consensus       158 ~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~v--lh~~~d~~~~~iL~~~~~aL~p~~~gG~  226 (296)
                      +++|+ +.+++.|++      ..++|++..+|+.+ +.+ .||+|+++=-  ...-..++...+.+.+.+.|++ -+|++
T Consensus       260 ~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~  338 (384)
T 3ldg_A          260 SGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWS  338 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcE
Confidence            99999 999988876      45689999999998 444 5999998522  1111234566777778788875 34888


Q ss_pred             EEEEee
Q 022515          227 VIIIDM  232 (296)
Q Consensus       227 lli~e~  232 (296)
                      ++|+..
T Consensus       339 ~~iit~  344 (384)
T 3ldg_A          339 QFILTN  344 (384)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            888764

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.64  E-value=4.8e-07  Score=80.64  Aligned_cols=150  Identities=19%  Similarity=0.254  Sum_probs=94.1

Q ss_pred             CCEEEEecCCchHHHHHH--------HHHC-------CCCeEEeccchh-H-------hhccCC----------CCCC--
Q 022515          131 LNSLVDVGGGIGTAAKAI--------AKAF-------PKLECTCFDLPH-V-------VNGLDS----------DLAN--  175 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~----------~~~r--  175 (296)
                      ..+|+|+|||+|..+..+        .+++       |..+++.-|+|. .       +...++          ...+  
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            579999999999999877        2333       788999999853 2       122211          0111  


Q ss_pred             -eeEEeccCCC-CCC--ccceeEehhhhccCCch------------------------------------HHHHHHHHHH
Q 022515          176 -LKYVGGDMFE-AIS--PADAVLLKWILHDWNDE------------------------------------ECVKILKKCK  215 (296)
Q Consensus       176 -i~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~------------------------------------~~~~iL~~~~  215 (296)
                       +.-++|.|.. .+|  .+|+|+++.+||..++.                                    +...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3336778887 566  49999999999976621                                    3345799999


Q ss_pred             HhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh-hh----h-hhhh-----------cC--ccccCHHHHHHHHH-hc
Q 022515          216 EAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF-DM----L-MMVL-----------LT--GTERDEKEWTKLFT-YA  275 (296)
Q Consensus       216 ~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~-~~----~-~~~~-----------~~--g~~rt~~e~~~ll~-~a  275 (296)
                      +.|+|   ||++++.-...++...... ......+ +.    + -++.           ++  -..++.+|++++++ +.
T Consensus       213 ~eL~p---GG~mvl~~~gr~~~~~~~~-~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~  288 (374)
T 3b5i_A          213 AEVKR---GGAMFLVCLGRTSVDPTDQ-GGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANG  288 (374)
T ss_dssp             HHEEE---EEEEEEEEEECCCSSTTCC-HHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHC
T ss_pred             HHhCC---CCEEEEEEecCCCCccccc-cchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcC
Confidence            99999   8888877665544211100 0000111 11    1 0111           11  12358999999998 58


Q ss_pred             CCceeEEEE
Q 022515          276 GFSDYKIIP  284 (296)
Q Consensus       276 Gf~~~~~~~  284 (296)
                      ||++..+..
T Consensus       289 ~F~I~~le~  297 (374)
T 3b5i_A          289 SFAIDKLVV  297 (374)
T ss_dssp             SEEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            999877643

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.63  E-value=7.1e-08  Score=86.91  Aligned_cols=99  Identities=15%  Similarity=0.111  Sum_probs=71.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCC---CC-ccceeEehhhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEA---IS-PADAVLLKWIL  199 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~---~p-~~D~v~~~~vl  199 (296)
                      .++.+|||+|||+|.++..+++.  +.+++++|+ +.+++.+++    ..-..++..+|.++.   .+ .||+|++.-..
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT  290 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred             cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence            34789999999999999999987  456999999 999988876    111134668998772   22 49999984221


Q ss_pred             ccCCc-------hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          200 HDWND-------EECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       200 h~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .....       ..-.++++.+.+.|+|   ||.++++..
T Consensus       291 f~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~s~  327 (393)
T 4dmg_A          291 LVKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLSSC  327 (393)
T ss_dssp             CCSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEEEC
Confidence            11111       1235789999999999   888876664

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.59  E-value=5e-08  Score=84.66  Aligned_cols=79  Identities=18%  Similarity=0.179  Sum_probs=64.3

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-C--C
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-A--I  187 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~--~  187 (296)
                      +...+++.+.  ..++.+|||+|||+|.++..+++++|+.+++++|. +.+++.|++    ..++++++.+|+.+ +  .
T Consensus        14 Ll~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           14 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   91 (301)
T ss_dssp             THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             HHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence            3455666655  56778999999999999999999999889999999 999988876    23799999999876 3  1


Q ss_pred             -----CccceeEeh
Q 022515          188 -----SPADAVLLK  196 (296)
Q Consensus       188 -----p~~D~v~~~  196 (296)
                           ..||.|++.
T Consensus        92 ~~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           92 KTLGIEKVDGILMD  105 (301)
T ss_dssp             HHTTCSCEEEEEEE
T ss_pred             HhcCCCCCCEEEEc
Confidence                 358998873

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.57  E-value=2.1e-07  Score=78.69  Aligned_cols=94  Identities=18%  Similarity=0.261  Sum_probs=67.6

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCCc-c-c
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AISP-A-D  191 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p~-~-D  191 (296)
                      ...+++.+.  ..++.+|||||||+|.++..++++ +..+++++|+ +.+++.+++ ...+++++.+|+.+ +++. + +
T Consensus        20 ~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~   96 (249)
T 3ftd_A           20 LKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE   96 (249)
T ss_dssp             HHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred             HHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence            345566655  567789999999999999999987 4579999999 999988875 35689999999998 6653 2 3


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHh
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEA  217 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~a  217 (296)
                      .+++.+.-++..    ..++.++.+.
T Consensus        97 ~~vv~NlPy~i~----~~il~~ll~~  118 (249)
T 3ftd_A           97 LKVVGNLPYNVA----SLIIENTVYN  118 (249)
T ss_dssp             EEEEEECCTTTH----HHHHHHHHHT
T ss_pred             cEEEEECchhcc----HHHHHHHHhc
Confidence            455555444333    3445555443

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.57  E-value=9.2e-08  Score=86.03  Aligned_cols=114  Identities=13%  Similarity=0.062  Sum_probs=81.3

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC--------------------------------------CeE
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK--------------------------------------LEC  157 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~--------------------------------------~~~  157 (296)
                      ++..++....  +.+..+|||.+||+|.++++.+....+                                      .++
T Consensus       183 lAa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          183 LAAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            3444555555  567789999999999999998876322                                      579


Q ss_pred             Eeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehhhhcc-CC-chHHHHHHHHHHHhcccCCCCcE
Q 022515          158 TCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKWILHD-WN-DEECVKILKKCKEAITSDGKKGK  226 (296)
Q Consensus       158 ~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p~~~gG~  226 (296)
                      +++|+ +.+++.|++      ..++|+|..+|+.+ +.+ .||+|+++=-... +. .++...+.+.+.+.|++ -+|++
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~  339 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWS  339 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCE
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCE
Confidence            99999 999998876      34589999999998 444 5999998432211 11 23455677777777765 23788


Q ss_pred             EEEEee
Q 022515          227 VIIIDM  232 (296)
Q Consensus       227 lli~e~  232 (296)
                      ++++..
T Consensus       340 ~~iit~  345 (385)
T 3ldu_A          340 YYLITS  345 (385)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            887753

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.54  E-value=6.4e-08  Score=88.83  Aligned_cols=109  Identities=15%  Similarity=0.088  Sum_probs=79.7

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-------------CCCeEEeccc-hhHhhccCC-----CCC--Cee
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLDS-----DLA--NLK  177 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~--ri~  177 (296)
                      .+++.+.  .....+|+|.|||+|.++..+++..             +..+++++|+ +.++..|+.     ...  +++
T Consensus       162 ~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~  239 (445)
T 2okc_A          162 AMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP  239 (445)
T ss_dssp             HHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             HHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence            3444333  3456799999999999999988753             4568999999 888887764     122  788


Q ss_pred             EEeccCCC-CCC-ccceeEehhhhccCCch---------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          178 YVGGDMFE-AIS-PADAVLLKWILHDWNDE---------------ECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       178 ~~~~D~~~-~~p-~~D~v~~~~vlh~~~d~---------------~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +..+|.+. +.. .||+|+++-.++.....               ....+++++.+.|+|   ||++.++-+
T Consensus       240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V~p  308 (445)
T 2okc_A          240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVLP  308 (445)
T ss_dssp             EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEEE
T ss_pred             EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEEEC
Confidence            99999988 433 69999997544432111               124789999999999   999888763

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.54  E-value=1.6e-07  Score=80.34  Aligned_cols=90  Identities=14%  Similarity=0.142  Sum_probs=66.5

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC-CCC---cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE-AIS---PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~-~~p---~~  190 (296)
                      ..+++...  ..++ +|||||||+|.++..++++.  .+++++|+ +.+++.+++  ..++++++.+|+.+ +++   .+
T Consensus        37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~  111 (271)
T 3fut_A           37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG  111 (271)
T ss_dssp             HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred             HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence            44555555  5566 99999999999999999984  68999999 999988876  44789999999998 655   35


Q ss_pred             ceeEehhhhccCCchHHHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKK  213 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~  213 (296)
                      |.|+. +.-++.+.+-..++|..
T Consensus       112 ~~iv~-NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          112 SLLVA-NLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             EEEEE-EECSSCCHHHHHHHHHH
T ss_pred             cEEEe-cCcccccHHHHHHHhcC
Confidence            66554 44455565544444543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.52  E-value=1.4e-07  Score=81.11  Aligned_cols=99  Identities=16%  Similarity=0.156  Sum_probs=75.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCCC---C-Ccccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFEA---I-SPADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~~---~-p~~D~v  193 (296)
                      +++++||=||||.|..+.++++..|..+++++|+ |.|++.+++          ...|++++.+|.++-   . ..||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            4678999999999999999998877789999999 999998876          368999999998872   2 249999


Q ss_pred             EehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          194 LLKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       194 ~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ++-..=-.-+.+  -..++++.++++|+|   ||.++.-
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q  197 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNP---GGIFVAQ  197 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence            984321000110  124789999999999   6666554

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.50  E-value=2.7e-07  Score=83.96  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=67.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC-ccceeEehhhhcc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS-PADAVLLKWILHD  201 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~  201 (296)
                      .+..+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ..+ ++|+.+|+.+..+ .||+|++.-    
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dP----  361 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDP----  361 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECC----
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcC----
Confidence            45679999999999999999886  568999999 999988876     234 9999999988433 699999832    


Q ss_pred             CCchHH-HHHHHHHHHhcccCCCCcEEEEE
Q 022515          202 WNDEEC-VKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       202 ~~d~~~-~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                       |.... ..+++.+. .|+|   ||.+++.
T Consensus       362 -Pr~g~~~~~~~~l~-~l~p---~givyvs  386 (425)
T 2jjq_A          362 -PRAGLHPRLVKRLN-REKP---GVIVYVS  386 (425)
T ss_dssp             -CTTCSCHHHHHHHH-HHCC---SEEEEEE
T ss_pred             -CccchHHHHHHHHH-hcCC---CcEEEEE
Confidence             22111 13455554 4898   7777664

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.50  E-value=5.9e-07  Score=80.16  Aligned_cols=150  Identities=13%  Similarity=0.150  Sum_probs=91.8

Q ss_pred             CCEEEEecCCchHHHHHHHHH-----------------CCCCeEEeccch-----------hH-hhccCC---CCCCeeE
Q 022515          131 LNSLVDVGGGIGTAAKAIAKA-----------------FPKLECTCFDLP-----------HV-VNGLDS---DLANLKY  178 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~-----------------~p~~~~~~~D~~-----------~~-~~~a~~---~~~ri~~  178 (296)
                      ..+|+|+||++|..+..+...                 .|.++++.-|+|           +. .+..++   ...+-.|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            578999999999999888776                 477889999987           11 111111   1112233


Q ss_pred             ---EeccCCC-CCC--ccceeEehhhhccCCchH-------------------------H------------HHHHHHHH
Q 022515          179 ---VGGDMFE-AIS--PADAVLLKWILHDWNDEE-------------------------C------------VKILKKCK  215 (296)
Q Consensus       179 ---~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~-------------------------~------------~~iL~~~~  215 (296)
                         ++|.|+. .+|  .+|+++++.+||..++..                         +            ..+|+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence               5577777 566  499999999999755321                         1            12378889


Q ss_pred             HhcccCCCCcEEEEEeeeeCCCC-CCCch-hhhhhhhhhhhh--------hhc--CccccCHHHHHHHHHhcC-CceeEE
Q 022515          216 EAITSDGKKGKVIIIDMIRENKK-GDDKS-IETQLFFDMLMM--------VLL--TGTERDEKEWTKLFTYAG-FSDYKI  282 (296)
Q Consensus       216 ~aL~p~~~gG~lli~e~~~~~~~-~~~~~-~~~~~~~~~~~~--------~~~--~g~~rt~~e~~~ll~~aG-f~~~~~  282 (296)
                      +.|+|   ||++++.-...+... ..... .....+.++..-        -.+  .-..++.+|++++++++| |++..+
T Consensus       213 ~eL~p---GG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l  289 (384)
T 2efj_A          213 EELIS---RGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL  289 (384)
T ss_dssp             HHEEE---EEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred             HHhcc---CCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence            99999   888887766554431 11000 011122221100        001  122358999999999985 777665


Q ss_pred             E
Q 022515          283 I  283 (296)
Q Consensus       283 ~  283 (296)
                      .
T Consensus       290 e  290 (384)
T 2efj_A          290 E  290 (384)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.46  E-value=4.2e-07  Score=77.03  Aligned_cols=68  Identities=15%  Similarity=0.233  Sum_probs=55.9

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS  188 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p  188 (296)
                      ...+++.+.  ..++.+|||||||+|.++..++++.  .+++++|+ +.+++.+++   ..++++++.+|+.+ +++
T Consensus        18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred             HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence            345555555  5677899999999999999999874  68999999 999998876   34799999999998 543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.43  E-value=2.3e-07  Score=89.61  Aligned_cols=99  Identities=9%  Similarity=0.124  Sum_probs=73.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CC-CCeeEEeccCCCC---C-CccceeEeh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DL-ANLKYVGGDMFEA---I-SPADAVLLK  196 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~D~~~~---~-p~~D~v~~~  196 (296)
                      .++.+|||+|||+|.++..++... ..+++++|+ +.+++.+++      .. ++++++.+|.++.   . ..||+|++.
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             cCCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            356799999999999999988853 346999999 899988876      23 5899999999872   2 259999983


Q ss_pred             hhh--------ccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          197 WIL--------HDWN-DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       197 ~vl--------h~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ---        +.+. ...-.++++++.+.|+|   ||.+++..
T Consensus       617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s~  657 (703)
T 3v97_A          617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFSN  657 (703)
T ss_dssp             CCSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEEE
Confidence            211        0111 12446789999999999   78777443

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.42  E-value=4.7e-07  Score=85.66  Aligned_cols=95  Identities=15%  Similarity=0.118  Sum_probs=70.8

Q ss_pred             CCCEEEEecCCchHHHHHHHH---HC-CCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC-ccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAK---AF-PKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS-PADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~---~~-p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p-~~D~v~~~~  197 (296)
                      +...|+|||||+|-++...++   +. -.+++..++-.+++..+++      ..++|+++.+|+.+ ..| ++|+|++-+
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEw  436 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSEL  436 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCC
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEc
Confidence            345899999999998544433   22 2347889998456656554      78999999999999 777 599999876


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEE
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKV  227 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~l  227 (296)
                      .=...-.|...++|-...+.|||   ||.+
T Consensus       437 MG~fLl~E~mlevL~Ardr~LKP---gGim  463 (637)
T 4gqb_A          437 LGSFADNELSPECLDGAQHFLKD---DGVS  463 (637)
T ss_dssp             CBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred             CcccccccCCHHHHHHHHHhcCC---CcEE
Confidence            65555556666788888899999   6654

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.39  E-value=3.3e-06  Score=74.27  Aligned_cols=144  Identities=15%  Similarity=0.153  Sum_probs=106.3

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC----C----------------------CCCeeEEecc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS----D----------------------LANLKYVGGD  182 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----------------------~~ri~~~~~D  182 (296)
                      .+...||.+|||.......+...+|+++++-+|.|++++.-++    .                      .++..+++.|
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4568999999999999999999888999999999998876543    1                      3789999999


Q ss_pred             CCC-CC----------C-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhh
Q 022515          183 MFE-AI----------S-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFF  250 (296)
Q Consensus       183 ~~~-~~----------p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~  250 (296)
                      +.+ ++          + ...++++--+|++++.+++.++|+.+.+.. |   +|.+++.|.+.+..... ++... ...
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~e~i~~~~~~~-~fg~~-m~~  249 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISYDPIGGSQPND-RFGAI-MQS  249 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEEEECCCCSTTC-CHHHH-HHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEEeccCCCCCcc-hHHHH-HHH
Confidence            987 32          1 257888899999999999999999999987 5   68888999887733222 22210 001


Q ss_pred             hhhh-h-hhc--CccccCHHHHHHHHHhcCCc
Q 022515          251 DMLM-M-VLL--TGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       251 ~~~~-~-~~~--~g~~rt~~e~~~ll~~aGf~  278 (296)
                      .+.. . ...  .....+.++..+.|.++||+
T Consensus       250 ~l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          250 NLKESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             HhhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            1111 0 001  12345889999999999997

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.39  E-value=9.9e-08  Score=81.97  Aligned_cols=71  Identities=14%  Similarity=0.266  Sum_probs=56.5

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC--CeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCCc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK--LECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AISP  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p~  189 (296)
                      ...+++.+.  ..++.+|||||||+|.++..|+++.+.  .+++++|+ +.+++.+++ ..++++++.+|+.+ +++.
T Consensus        31 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           31 IDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            344555555  567789999999999999999998653  45999999 999998874 24689999999998 6553

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.36  E-value=1.6e-06  Score=65.93  Aligned_cols=83  Identities=20%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             CCCCEEEEecCCch-HHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCC----ccceeEehhhhccC
Q 022515          129 EGLNSLVDVGGGIG-TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAIS----PADAVLLKWILHDW  202 (296)
Q Consensus       129 ~~~~~vLDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p----~~D~v~~~~vlh~~  202 (296)
                      ..+.+|||||||.| ..+..|++.. +..++++|+ |..++          ++..|+|++..    +||+|+..+     
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~----------~v~dDiF~P~~~~Y~~~DLIYsir-----   97 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG----------IVRDDITSPRMEIYRGAALIYSIR-----   97 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT----------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc----------eEEccCCCCcccccCCcCEEEEcC-----
Confidence            45679999999999 6888888743 788999998 66553          88999999643    699998865     


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      |..+...-+.++++..     |.-++|.-.
T Consensus        98 PP~El~~~i~~lA~~v-----~adliI~pL  122 (153)
T 2k4m_A           98 PPAEIHSSLMRVADAV-----GARLIIKPL  122 (153)
T ss_dssp             CCTTTHHHHHHHHHHH-----TCEEEEECB
T ss_pred             CCHHHHHHHHHHHHHc-----CCCEEEEcC
Confidence            5666666777777766     456655543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.35  E-value=3.9e-07  Score=77.25  Aligned_cols=131  Identities=18%  Similarity=0.135  Sum_probs=82.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHH-------CCC-----CeEEeccc-h---hHhh-----------ccCC-----------
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKA-------FPK-----LECTCFDL-P---HVVN-----------GLDS-----------  171 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~-----------~a~~-----------  171 (296)
                      +..+|||||+|+|..+..+++.       .|+     ++++.++. |   +.+.           .+++           
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999999887765       674     68999997 6   2222           1111           


Q ss_pred             --------CCCCeeEEeccCCC--C-CC-----ccceeEehh-hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          172 --------DLANLKYVGGDMFE--A-IS-----PADAVLLKW-ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       172 --------~~~ri~~~~~D~~~--~-~p-----~~D~v~~~~-vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                              ...++++..||..+  + .+     .||+|++-- .-...|+--...+|+.+++.|+|   ||+++...   
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~p---GG~l~tys---  213 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFT---  213 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEE---EEEEEESC---
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCC---CcEEEEEe---
Confidence                    12457788999866  2 22     489999842 11101110124789999999999   77765311   


Q ss_pred             CCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515          235 ENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY  295 (296)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  295 (296)
                                                   ....+++.|.++||++.++...+.-..++.++
T Consensus       214 -----------------------------aa~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~  245 (257)
T 2qy6_A          214 -----------------------------SAGFVRRGLQEAGFTMQKRKGFGRKREMLCGV  245 (257)
T ss_dssp             -----------------------------CBHHHHHHHHHHTEEEEEECCSTTCCCEEEEE
T ss_pred             -----------------------------CCHHHHHHHHHCCCEEEeCCCCCCCCceEEEE
Confidence                                         01246678899999977654444444555543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.32  E-value=3.2e-07  Score=77.67  Aligned_cols=84  Identities=11%  Similarity=0.119  Sum_probs=58.9

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-C--CCCeeEEeccCCC-CCCc-c
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-D--LANLKYVGGDMFE-AISP-A  190 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~--~~ri~~~~~D~~~-~~p~-~  190 (296)
                      ...+++.+.  ..++.+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ .  .++++++.+|+.+ +++. +
T Consensus        10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~   85 (252)
T 1qyr_A           10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred             HHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence            345555555  5667899999999999999 54 544444999999 999998876 2  2589999999988 5542 2


Q ss_pred             -----ceeEehhhhccCCc
Q 022515          191 -----DAVLLKWILHDWND  204 (296)
Q Consensus       191 -----D~v~~~~vlh~~~d  204 (296)
                           +.+++++.-++.+.
T Consensus        86 ~~~~~~~~vvsNlPY~i~~  104 (252)
T 1qyr_A           86 EKMGQPLRVFGNLPYNIST  104 (252)
T ss_dssp             HHHTSCEEEEEECCTTTHH
T ss_pred             cccCCceEEEECCCCCccH
Confidence                 34555554444433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.27  E-value=2e-06  Score=83.10  Aligned_cols=111  Identities=11%  Similarity=0.001  Sum_probs=76.2

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHH------------------------------------------CCC
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA------------------------------------------FPK  154 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~------------------------------------------~p~  154 (296)
                      +..++....  +.+..+|||.+||+|.++++.+..                                          .+.
T Consensus       179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            344555555  456789999999999999988764                                          233


Q ss_pred             CeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCC----ccceeEehhhh--ccCCchHHHHHHHHHHHh---
Q 022515          155 LECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AIS----PADAVLLKWIL--HDWNDEECVKILKKCKEA---  217 (296)
Q Consensus       155 ~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p----~~D~v~~~~vl--h~~~d~~~~~iL~~~~~a---  217 (296)
                      .+++++|+ +.+++.|++      ..++|+|..+|+.+ ..|    .+|+|+++=-.  ..-..++...+.+.+.+.   
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~  336 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN  336 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence            68999999 999988876      45679999999987 322    58999985211  111223344455544444   


Q ss_pred             cccCCCCcEEEEEee
Q 022515          218 ITSDGKKGKVIIIDM  232 (296)
Q Consensus       218 L~p~~~gG~lli~e~  232 (296)
                      +.|   ||+++|+..
T Consensus       337 ~~~---g~~~~ilt~  348 (703)
T 3v97_A          337 QFG---GWNLSLFSA  348 (703)
T ss_dssp             HCT---TCEEEEEES
T ss_pred             hCC---CCeEEEEeC
Confidence            456   899998864

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.26  E-value=5.5e-06  Score=73.29  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=91.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHH----------------CCCCeEEeccch-hHhhccCC-CC-----CCeeE---EeccC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKA----------------FPKLECTCFDLP-HVVNGLDS-DL-----ANLKY---VGGDM  183 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~~a~~-~~-----~ri~~---~~~D~  183 (296)
                      ...+|+|+||++|..+..+...                .|..+++.-|+| ......-+ +.     .+-.|   ++|.|
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            4578999999999777654333                467788999985 33332221 11     12233   56788


Q ss_pred             CC-CCC--ccceeEehhhhccCCch-------------------------------HHHHHHHHHHHhcccCCCCcEEEE
Q 022515          184 FE-AIS--PADAVLLKWILHDWNDE-------------------------------ECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       184 ~~-~~p--~~D~v~~~~vlh~~~d~-------------------------------~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      +. .+|  .+|+++++..||..++.                               +-..+|+..++.|+|   ||++++
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mvl  207 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL  207 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred             hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Confidence            87 566  49999999999976531                               224569999999999   999887


Q ss_pred             EeeeeCCCCCCC-----chhhh-hhhhhhhhhh--------hc--CccccCHHHHHHHHHhcCC-ceeEE
Q 022515          230 IDMIRENKKGDD-----KSIET-QLFFDMLMMV--------LL--TGTERDEKEWTKLFTYAGF-SDYKI  282 (296)
Q Consensus       230 ~e~~~~~~~~~~-----~~~~~-~~~~~~~~~~--------~~--~g~~rt~~e~~~ll~~aGf-~~~~~  282 (296)
                      .-...++.....     .+... ..+.++-.-.        .+  .-..++.+|++++++++|. ++..+
T Consensus       208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~  277 (359)
T 1m6e_X          208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence            776655432100     01001 1111111000        00  1134488999999999964 66554

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.24  E-value=1.1e-06  Score=74.57  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=55.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-h-------hHhhccCC------CCCCeeEEeccCCC--C-C---
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-P-------HVVNGLDS------DLANLKYVGGDMFE--A-I---  187 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~------~~~ri~~~~~D~~~--~-~---  187 (296)
                      ..++.+|||+|||+|..+..+++.  +.+++++|+ |       .+++.|++      ..+|++++.+|..+  + +   
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            445679999999999999999986  579999999 8       78877764      24679999999876  2 3   


Q ss_pred             -CccceeEehhhhc
Q 022515          188 -SPADAVLLKWILH  200 (296)
Q Consensus       188 -p~~D~v~~~~vlh  200 (296)
                       ..||+|++.-..+
T Consensus       159 ~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          159 QGKPDIVYLDPMYP  172 (258)
T ss_dssp             HCCCSEEEECCCC-
T ss_pred             CCCccEEEECCCCC
Confidence             3599999854443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.24  E-value=5.4e-07  Score=80.61  Aligned_cols=89  Identities=10%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC---C--------------
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA---I--------------  187 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~---~--------------  187 (296)
                      +.+|||+|||+|.++..+++.  ..+++++|+ +.+++.|++     ..++++|+.+|..+-   .              
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~  291 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL  291 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence            468999999999999988875  358999999 999988875     236899999998651   1              


Q ss_pred             --CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          188 --SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       188 --p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                        ..||+|++.     -|..   .+..++.+.|++   +|+++.+..
T Consensus       292 ~~~~fD~Vv~d-----PPr~---g~~~~~~~~l~~---~g~ivyvsc  327 (369)
T 3bt7_A          292 KSYQCETIFVD-----PPRS---GLDSETEKMVQA---YPRILYISC  327 (369)
T ss_dssp             GGCCEEEEEEC-----CCTT---CCCHHHHHHHTT---SSEEEEEES
T ss_pred             ccCCCCEEEEC-----cCcc---ccHHHHHHHHhC---CCEEEEEEC
Confidence              158999872     2221   234456666777   788877653

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.23  E-value=1e-06  Score=78.97  Aligned_cols=93  Identities=11%  Similarity=-0.001  Sum_probs=71.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C---------------C-CCeeEEeccCCCC--
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D---------------L-ANLKYVGGDMFEA--  186 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~---------------~-~ri~~~~~D~~~~--  186 (296)
                      ++.+|||+|||+|..++.++++.+..+++++|+ +..++.+++    .               . ++++++.+|..+.  
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            467999999999999999999988889999999 888887765    2               2 2389999998762  


Q ss_pred             -CC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          187 -IS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       187 -~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       .+ .||+|++.=      .-....++..+.+.++|   ||.+++..
T Consensus       127 ~~~~~fD~I~lDP------~~~~~~~l~~a~~~lk~---gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP------FGSPMEFLDTALRSAKR---RGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC------SSCCHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             hccCCCCEEEeCC------CCCHHHHHHHHHHhcCC---CCEEEEEe
Confidence             23 599999631      11124789999999999   88766654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.23  E-value=2.9e-06  Score=71.61  Aligned_cols=103  Identities=12%  Similarity=0.041  Sum_probs=63.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh  200 (296)
                      +++..+|||+|||+|.++...++..+..+++++|+ -........   ...++.....++.. .++  .+|+|++....+
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~apn  151 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGES  151 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCccC
Confidence            67778999999999999998887765555666665 222111111   11133444444322 332  499999976544


Q ss_pred             ---cCCch-HHHHHHHHHHHhcccCCCC-cEEEEEeeee
Q 022515          201 ---DWNDE-ECVKILKKCKEAITSDGKK-GKVIIIDMIR  234 (296)
Q Consensus       201 ---~~~d~-~~~~iL~~~~~aL~p~~~g-G~lli~e~~~  234 (296)
                         ++-|. ....+|+-+.+.|+|   | |.+++ ..+.
T Consensus       152 sG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~-KVf~  186 (277)
T 3evf_A          152 SSSSVTEGERTVRVLDTVEKWLAC---GVDNFCV-KVLA  186 (277)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE-EESC
T ss_pred             cCchHHHHHHHHHHHHHHHHHhCC---CCCeEEE-EecC
Confidence               12222 334568999999999   8 77665 4433

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.17  E-value=4.7e-06  Score=72.55  Aligned_cols=68  Identities=13%  Similarity=0.192  Sum_probs=55.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC-----CccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI-----SPADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~-----p~~D~v~  194 (296)
                      ..++.+|||+|||+|..+.++++.. +..+++++|+ +..++.+++     ...+++++.+|+.+ +.     ..||.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            5677899999999999999999874 5679999999 888887765     34679999999876 21     2489998


Q ss_pred             e
Q 022515          195 L  195 (296)
Q Consensus       195 ~  195 (296)
                      +
T Consensus       180 ~  180 (309)
T 2b9e_A          180 L  180 (309)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.16  E-value=1.3e-06  Score=82.85  Aligned_cols=95  Identities=16%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             CCEEEEecCCchHHHHHHHHH----C---------CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CC---
Q 022515          131 LNSLVDVGGGIGTAAKAIAKA----F---------PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AI---  187 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~----~---------p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~---  187 (296)
                      ...|||||||+|-++...+++    .         ...+++++|. |..+...++     ..++|+++.+|+.+ ..   
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            468999999999997533222    1         2348999998 544433322     68999999999998 55   


Q ss_pred             ---C-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEE
Q 022515          188 ---S-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       188 ---p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                         + .+|+|++-+.=.....|-..+.|..+.+.|+|   ||.++
T Consensus       490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---TTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---TCEEE
T ss_pred             cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---CcEEE
Confidence               4 59999987765544555566788888899999   77543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.13  E-value=1.1e-06  Score=78.79  Aligned_cols=94  Identities=11%  Similarity=-0.010  Sum_probs=72.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCC------CCCC-eeEEeccCCC--C--CC-ccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDS------DLAN-LKYVGGDMFE--A--IS-PADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~D~~~--~--~p-~~D~v~  194 (296)
                      .++.+|||++||+|.+++.++.+.++ .+++.+|+ +..++.+++      ..++ ++++.+|.++  .  .+ .||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            35679999999999999999998765 57999999 888888776      3455 9999999865  2  22 499999


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +.=  +  ..  ...++..+.+.|+|   ||.|++..
T Consensus       131 lDP--~--g~--~~~~l~~a~~~Lk~---gGll~~t~  158 (392)
T 3axs_A          131 LDP--F--GT--PVPFIESVALSMKR---GGILSLTA  158 (392)
T ss_dssp             ECC--S--SC--CHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ECC--C--cC--HHHHHHHHHHHhCC---CCEEEEEe
Confidence            843  1  11  13588899999999   78666655

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.10  E-value=3.2e-06  Score=71.46  Aligned_cols=107  Identities=17%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCC-eeEEec-cCCC-CCCcc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLAN-LKYVGG-DMFE-AISPA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~r-i~~~~~-D~~~-~~p~~  190 (296)
                      .++.+.+.  +.+..+|||+|||.|.++...++..+-..++++|+ ..+...+..   ...+ +.+... |+.. +...+
T Consensus        80 ~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~  157 (282)
T 3gcz_A           80 RWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG  157 (282)
T ss_dssp             HHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence            35556654  67888999999999999998887776667788887 443333321   1223 333333 4443 22359


Q ss_pred             ceeEehhhhc----cCCchHHHHHHHHHHHhcccCCCC--cEEEE
Q 022515          191 DAVLLKWILH----DWNDEECVKILKKCKEAITSDGKK--GKVII  229 (296)
Q Consensus       191 D~v~~~~vlh----~~~d~~~~~iL~~~~~aL~p~~~g--G~lli  229 (296)
                      |+|++.-..+    ..+......+|+-+.+.|+|   |  |.+++
T Consensus       158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~  199 (282)
T 3gcz_A          158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCI  199 (282)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEE
T ss_pred             CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEE
Confidence            9999966554    11122234568888899999   6  66554

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.97  E-value=9.8e-06  Score=75.97  Aligned_cols=100  Identities=10%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCC------------------CCeEEeccc-hhHhhccCC-----CCC-----CeeEE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFP------------------KLECTCFDL-PHVVNGLDS-----DLA-----NLKYV  179 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~-----~~~-----ri~~~  179 (296)
                      ....+|+|.+||+|.++..+.+...                  ..+++++|+ +.++..|+.     ..+     ++++.
T Consensus       168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~  247 (541)
T 2ar0_A          168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  247 (541)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence            4567999999999999988876531                  247999999 888887764     222     27899


Q ss_pred             eccCCC-C---CCccceeEehhhhcc--CC----------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          180 GGDMFE-A---ISPADAVLLKWILHD--WN----------DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       180 ~~D~~~-~---~p~~D~v~~~~vlh~--~~----------d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .+|.+. +   .+.||+|+++=-...  +.          ......++.++.+.|+|   ||++.++-
T Consensus       248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V~  312 (541)
T 2ar0_A          248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVV  312 (541)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEEe
Confidence            999987 3   236999998533221  11          11224789999999999   99988875

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.88  E-value=1.1e-05  Score=71.54  Aligned_cols=96  Identities=18%  Similarity=0.123  Sum_probs=70.2

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------------CCCCeeEEeccCCCC-------CC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------------DLANLKYVGGDMFEA-------IS  188 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~ri~~~~~D~~~~-------~p  188 (296)
                      ++++||=||||.|..+.++++. |..+++.+|+ |.|++.+++             ..+|++++.+|..+-       ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            4689999999999999999874 5578999999 999998876             135789999997651       12


Q ss_pred             ccceeEehhhhcc-CCc-------hHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          189 PADAVLLKWILHD-WND-------EECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       189 ~~D~v~~~~vlh~-~~d-------~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      .||+|++--.=.. -++       .-..++++.++++|+|   ||.++.
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~  329 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFT  329 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEE
Confidence            4999998522110 011       1135788999999999   666544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.83  E-value=7.2e-05  Score=66.02  Aligned_cols=95  Identities=11%  Similarity=0.093  Sum_probs=67.1

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      +.++.++||+||++|.++..++++  +.+++++|..++-.... ..++|++..+|.+. ..+  ++|++++..+.+   .
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~-~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p  282 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLM-DTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---P  282 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHH-TTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---H
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhc-cCCCeEEEeCccccccCCCCCcCEEEEcCCCC---h
Confidence            568899999999999999999987  78999999744443333 56889999999998 332  499999976542   3


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .....++.+.......   ++.|+.+.
T Consensus       283 ~~~~~l~~~wl~~~~~---~~aI~~lK  306 (375)
T 4auk_A          283 AKVAALMAQWLVNGWC---RETIFNLK  306 (375)
T ss_dssp             HHHHHHHHHHHHTTSC---SEEEEEEE
T ss_pred             HHhHHHHHHHHhcccc---ceEEEEEE
Confidence            3444555554444433   34444444

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.83  E-value=6.9e-05  Score=65.12  Aligned_cols=142  Identities=14%  Similarity=0.108  Sum_probs=96.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccchhHhhccCC--------CCCCeeEEeccCCCCC------Cc----
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFEAI------SP----  189 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~~~------p~----  189 (296)
                      .+...||++|||-=.....+.  .| +++++-+|.|.+++..++        ..++..++..|+.+.+      .+    
T Consensus       101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          101 DGIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TTCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             hCCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            355789999999988866654  24 478999999999987665        2678999999998631      11    


Q ss_pred             -cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhh--hhhh-hhh-hhh-----h-c
Q 022515          190 -ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIET--QLFF-DML-MMV-----L-L  258 (296)
Q Consensus       190 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~--~~~~-~~~-~~~-----~-~  258 (296)
                       .-++++-.+||++++++...+|+.+.+.+.|   | ..+++|.+.++.  .  +...  ..+. ... -..     . .
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~---g-s~l~~d~~~~~~--~--~~~~~~~~~~~~~~~~~g~~~~~~l~  250 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---G-SRIAVETSPLHG--D--EWREQMQLRFRRVSDALGFEQAVDVQ  250 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---T-CEEEEECCCTTC--S--HHHHHHHHHHHHHHC-----------
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCC---C-eEEEEEecCCCC--c--chhHHHHHHHHHHHHHcCCcCCCCcc
Confidence             2367888899999999999999999999888   4 456667665433  1  1110  1111 000 000     0 0


Q ss_pred             Cccc-cC-HHHHHHHHHhcCCcee
Q 022515          259 TGTE-RD-EKEWTKLFTYAGFSDY  280 (296)
Q Consensus       259 ~g~~-rt-~~e~~~ll~~aGf~~~  280 (296)
                      +-.. ++ .++..++|.+.||+.+
T Consensus       251 ~~~~~~~~~~~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          251 ELIYHDENRAVVADWLNRHGWRAT  274 (310)
T ss_dssp             CCTTCCTTCCCHHHHHTTTTEEEE
T ss_pred             ccccCCCChHHHHHHHHHCcCccc
Confidence            1122 25 7899999999999987

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.80  E-value=6.4e-06  Score=74.16  Aligned_cols=65  Identities=15%  Similarity=0.192  Sum_probs=53.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C--C-CCeeEEeccCCCC--C---CccceeEe
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D--L-ANLKYVGGDMFEA--I---SPADAVLL  195 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~-~ri~~~~~D~~~~--~---p~~D~v~~  195 (296)
                      .++.+|||+|||+|..+..+++.  ..+++++|+ +.+++.|++    .  . ++++++.+|+.+.  .   ..||+|++
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            34689999999999999988877  569999999 999988875    2  2 5899999999872  2   25999998

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.79  E-value=0.00032  Score=61.49  Aligned_cols=146  Identities=13%  Similarity=0.210  Sum_probs=103.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHH-CCCCeEEeccchhHhhccCC----------------------------CCCCeeEEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDLPHVVNGLDS----------------------------DLANLKYVG  180 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~----------------------------~~~ri~~~~  180 (296)
                      +...||-+|||.=.....+... .++++++-+|.|++++.-++                            ..++..+++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            5679999999999999888775 36789999999998864221                            157899999


Q ss_pred             ccCCC-C-C---------C-c-cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhh
Q 022515          181 GDMFE-A-I---------S-P-ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQ  247 (296)
Q Consensus       181 ~D~~~-~-~---------p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~  247 (296)
                      .|+.+ . +         . . .-++++--+|.+++.+++..+|+.+.+...+    |.+++.|.+.+.+    ++..  
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~----~~~i~yE~i~p~d----~fg~--  239 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER----AMFINYEQVNMGD----RFGQ--  239 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCTTS----HHHH--
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC----ceEEEEeccCCCC----HHHH--
Confidence            99986 1 1         1 1 3477888899999999999999999998764    7888889885432    2211  


Q ss_pred             hhh-hhhhhhh-cCc--cccCHHHHHHHHHhcCCceeEEEEc
Q 022515          248 LFF-DMLMMVL-LTG--TERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       248 ~~~-~~~~~~~-~~g--~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .+. .+..... ..+  ...+.++..+.|.++||+.+++..+
T Consensus       240 ~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          240 IMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM  281 (334)
T ss_dssp             HHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred             HHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence            111 1100000 011  2348899999999999999877664

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.77  E-value=0.00011  Score=59.66  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=63.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------C--CCCeeEEeccCCCC------------
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------D--LANLKYVGGDMFEA------------  186 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~ri~~~~~D~~~~------------  186 (296)
                      ..+..+||+||+|  ..++.+++ .++.+++.+|. ++..+.+++      .  .++|+++.+|..+.            
T Consensus        28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence            3456899999985  45555555 45789999998 888888765      3  67999999995421            


Q ss_pred             ------------C---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          187 ------------I---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       187 ------------~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                                  .   ..||+|++-.-      . ....+..+.+.|+|   ||.| |+|.+
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~------k-~~~~~~~~l~~l~~---GG~I-v~DNv  155 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGR------F-RVGCALATAFSITR---PVTL-LFDDY  155 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSS------S-HHHHHHHHHHHCSS---CEEE-EETTG
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCC------C-chhHHHHHHHhcCC---CeEE-EEeCC
Confidence                        1   24999999541      1 12445556788998   6655 66653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.75  E-value=3.4e-05  Score=65.51  Aligned_cols=76  Identities=18%  Similarity=0.170  Sum_probs=61.7

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-C--C---
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-A--I---  187 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~--~---  187 (296)
                      +.+.+++.+.  ..++..+||.+||.|..+..++++  +.+++++|. |.+++.+++ ..+|++++.+||.+ +  .   
T Consensus        10 Ll~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~~   85 (285)
T 1wg8_A           10 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL   85 (285)
T ss_dssp             THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHHc
Confidence            4567777776  677889999999999999999998  779999999 999987765 22699999999976 2  1   


Q ss_pred             --CccceeEe
Q 022515          188 --SPADAVLL  195 (296)
Q Consensus       188 --p~~D~v~~  195 (296)
                        ..+|.|++
T Consensus        86 g~~~vDgIL~   95 (285)
T 1wg8_A           86 GVERVDGILA   95 (285)
T ss_dssp             TCSCEEEEEE
T ss_pred             CCCCcCEEEe
Confidence              24787776

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.72  E-value=2.5e-05  Score=66.09  Aligned_cols=80  Identities=18%  Similarity=0.237  Sum_probs=57.7

Q ss_pred             HHHHHhcccccCCC--CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhh-------ccCC---C---C-CCeeEEe
Q 022515          118 SVMIHKCKDVFEGL--NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVN-------GLDS---D---L-ANLKYVG  180 (296)
Q Consensus       118 ~~~~~~~~~~~~~~--~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~---~---~-~ri~~~~  180 (296)
                      ..+.+.+.  ..++  .+|||+|||+|..+..++.+  +.+++++|. |.++.       .+++   .   . +|++++.
T Consensus        76 e~l~~al~--l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~  151 (258)
T 2oyr_A           76 EAVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (258)
T ss_dssp             SHHHHHTT--CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             HHHHHHhc--ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence            34445554  4555  79999999999999999998  568999999 76533       2221   1   1 6899999


Q ss_pred             ccCCC---CCC-ccceeEehhhhcc
Q 022515          181 GDMFE---AIS-PADAVLLKWILHD  201 (296)
Q Consensus       181 ~D~~~---~~p-~~D~v~~~~vlh~  201 (296)
                      +|..+   ..+ .||+|++.-..++
T Consensus       152 ~D~~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          152 ASSLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             SCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred             CCHHHHHHhCcccCCEEEEcCCCCC
Confidence            99875   233 5999999755543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.71  E-value=6e-05  Score=64.13  Aligned_cols=99  Identities=13%  Similarity=0.101  Sum_probs=62.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CC-CCeeEEec-cCCC-CCCccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DL-ANLKYVGG-DMFE-AISPADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~-~ri~~~~~-D~~~-~~p~~D~v~~~~vlh  200 (296)
                      +.++.+|||+||++|.++..+++..+-..++++|+ .........   .. +-+.+..+ |++. ....+|+|++.-.-+
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn  158 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES  158 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence            56788999999999999999998765556778887 332222211   12 22334433 5444 223599999865443


Q ss_pred             ----cCCchHHHHHHHHHHHhcccCCCC-cEEEE
Q 022515          201 ----DWNDEECVKILKKCKEAITSDGKK-GKVII  229 (296)
Q Consensus       201 ----~~~d~~~~~iL~~~~~aL~p~~~g-G~lli  229 (296)
                          ..+......+|.-+.+.|+|   | |.+++
T Consensus       159 sG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~  189 (300)
T 3eld_A          159 SSNPLVERDRTMKVLENFERWKHV---NTENFCV  189 (300)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEE
Confidence                11111224668888899999   8 76655

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.68  E-value=2.9e-05  Score=72.78  Aligned_cols=97  Identities=15%  Similarity=0.098  Sum_probs=69.1

Q ss_pred             CEEEEecCCchHHHHHHHHHCC---------------CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC-
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFP---------------KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI-  187 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~-  187 (296)
                      .+|+|.+||+|.++..+.+..+               ..+++++|+ +.++..|+.      ...++.+..+|.+. +. 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            4999999999999988765432               468999999 888887764      23456668899887 32 


Q ss_pred             C--ccceeEehh--hhccCCch-------------------------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          188 S--PADAVLLKW--ILHDWNDE-------------------------ECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       188 p--~~D~v~~~~--vlh~~~d~-------------------------~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +  .||+|+++=  ....|..+                         ....+++++.+.|+|   ||++.++-
T Consensus       326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~aiVl  395 (544)
T 3khk_A          326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---TGSMALLL  395 (544)
T ss_dssp             TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---CceEEEEe
Confidence            2  499999832  21112111                         113589999999999   99988774

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.62  E-value=0.00017  Score=69.54  Aligned_cols=101  Identities=13%  Similarity=0.088  Sum_probs=69.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCC---CCeEEeccc-hhHhhcc--CC---------CCCCeeEEeccCCCC----CCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFP---KLECTCFDL-PHVVNGL--DS---------DLANLKYVGGDMFEA----ISP  189 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~---------~~~ri~~~~~D~~~~----~p~  189 (296)
                      .++.+|+|.|||+|.++..+++..+   ..+++++|+ +.++..|  +.         ..+...+...|+..+    ...
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            3567999999999999999999876   357999999 8887776  21         112235666677762    235


Q ss_pred             cceeEehhhh-ccCCch--------------------------HHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          190 ADAVLLKWIL-HDWNDE--------------------------ECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       190 ~D~v~~~~vl-h~~~d~--------------------------~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ||+|+++=-. ..+..+                          -...+++++.+.|+|   ||++.++-+
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfIlP  466 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAIMP  466 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEEEE
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEEEC
Confidence            9999883221 001110                          123478889999999   899887653

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.51  E-value=0.00018  Score=67.30  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=72.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHC---CCCeEEeccc-hhHhhccCC-----CC--CCeeEEeccCCC-CCC-----ccce
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAF---PKLECTCFDL-PHVVNGLDS-----DL--ANLKYVGGDMFE-AIS-----PADA  192 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~--~ri~~~~~D~~~-~~p-----~~D~  192 (296)
                      ...+|+|.+||+|.++..+.+..   +..+++++|+ +.+...|+.     ..  +++.+..+|.+. ++|     .||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            56799999999999999998875   3578999999 888887764     12  578899999987 322     4999


Q ss_pred             eEehhhh-ccC------------------Cc--hHHHHHHHHHHHhcc-cCCCCcEEEEEe
Q 022515          193 VLLKWIL-HDW------------------ND--EECVKILKKCKEAIT-SDGKKGKVIIID  231 (296)
Q Consensus       193 v~~~~vl-h~~------------------~d--~~~~~iL~~~~~aL~-p~~~gG~lli~e  231 (296)
                      |+++=-. ..|                  +.  .....++.++.+.|+ |   ||++.++-
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~---gGr~a~Vl  358 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQD---NGVMAIVL  358 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTT---TCEEEEEE
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCC---ceeEEEEe
Confidence            9974100 111                  10  011358999999999 8   99987765

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.38  E-value=3.7e-05  Score=83.68  Aligned_cols=143  Identities=15%  Similarity=0.130  Sum_probs=67.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCC-----CCeEEeccc-hhHhhccCCC--CCCeeEEeccCCCC---CC-ccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFP-----KLECTCFDL-PHVVNGLDSD--LANLKYVGGDMFEA---IS-PADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~D~~~~---~p-~~D~v~~~~  197 (296)
                      +..+||+||+|+|..+..+++...     ..+++..|+ +...+.+++.  .-.++...-|..++   .+ .||+|+.++
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence            356999999999988777766543     236888888 6777777641  11222221233222   12 499999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCC
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGF  277 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf  277 (296)
                      +||--++.  ...|+++++.|+|   ||++++.+......     +.....++.-.  ...+....+.++|.++|+++||
T Consensus      1320 vl~~t~~~--~~~l~~~~~lL~p---~G~l~~~e~~~~~~-----~g~~~~~~~~~--~r~~~~~~~~~~w~~~l~~~gf 1387 (2512)
T 2vz8_A         1320 ALATLGDP--AVAVGNMAATLKE---GGFLLLHTLLAGHP-----LGEMVGFLTSP--EQGGRHLLSQDQWESLFAGASL 1387 (2512)
T ss_dssp             C-------------------------CCEEEEEEC---------------------------------CTTTTSSTTTTE
T ss_pred             cccccccH--HHHHHHHHHhcCC---CcEEEEEecccccc-----ccccccccccc--cccCCcccCHHHHHHHHHhCCC
Confidence            99955443  4779999999999   99998887542110     00000111000  0001123367889999999999


Q ss_pred             ceeEEEE
Q 022515          278 SDYKIIP  284 (296)
Q Consensus       278 ~~~~~~~  284 (296)
                      +.+.+..
T Consensus      1388 ~~~~~~~ 1394 (2512)
T 2vz8_A         1388 HLVALKR 1394 (2512)
T ss_dssp             EEEEEEE
T ss_pred             ceeeecc
Confidence            8876543

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.32  E-value=0.00042  Score=56.91  Aligned_cols=100  Identities=15%  Similarity=0.113  Sum_probs=67.4

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEec-cCCC-CCCcc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGG-DMFE-AISPA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~-D~~~-~~p~~  190 (296)
                      ..+.+.+.  +.+..+|||+||++|.++...+....-.++.++|+ +.-.+.-+-    .-+-|+|..+ |++. +.-.+
T Consensus        68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~  145 (267)
T 3p8z_A           68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC  145 (267)
T ss_dssp             HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence            45556664  67788999999999999998877765568999998 443332211    3477999999 9776 33359


Q ss_pred             ceeEehhhhccCCc----h-HHHHHHHHHHHhccc
Q 022515          191 DAVLLKWILHDWND----E-ECVKILKKCKEAITS  220 (296)
Q Consensus       191 D~v~~~~vlh~~~d----~-~~~~iL~~~~~aL~p  220 (296)
                      |+++|.--= --+.    + ...++|.-+.+.|++
T Consensus       146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~  179 (267)
T 3p8z_A          146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN  179 (267)
T ss_dssp             SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred             cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc
Confidence            999883221 1111    1 223466767788887

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.24  E-value=0.00063  Score=56.65  Aligned_cols=105  Identities=17%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC--C--CeEEeccchhHhhccCCCCCCe---eEEec-cCCCCCC-
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP--K--LECTCFDLPHVVNGLDSDLANL---KYVGG-DMFEAIS-  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p--~--~~~~~~D~~~~~~~a~~~~~ri---~~~~~-D~~~~~p-  188 (296)
                      .++.+.+  .++++.+|||+||+.|.++...++.-+  .  -..+++|+ +...... ....+   .|..+ ||++..+ 
T Consensus        63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~-~~~Gv~~i~~~~G~Df~~~~~~  138 (269)
T 2px2_A           63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLM-QSYGWNIVTMKSGVDVFYKPSE  138 (269)
T ss_dssp             HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCC-CSTTGGGEEEECSCCGGGSCCC
T ss_pred             HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcc-cCCCceEEEeeccCCccCCCCC
Confidence            3455554  378899999999999999998777521  1  12344453 1111110 11333   55657 9998333 


Q ss_pred             ccceeEehhhhc---cCCch-HHHHHHHHHHHhcccCCCCc-EEEE
Q 022515          189 PADAVLLKWILH---DWNDE-ECVKILKKCKEAITSDGKKG-KVII  229 (296)
Q Consensus       189 ~~D~v~~~~vlh---~~~d~-~~~~iL~~~~~aL~p~~~gG-~lli  229 (296)
                      .+|+|++--.=.   ..-|. ....+|.-+.+.|+|   || .+++
T Consensus       139 ~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~Fvv  181 (269)
T 2px2_A          139 ISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCI  181 (269)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEE
T ss_pred             CCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEE
Confidence            599999843211   00111 122357667789999   78 5544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.18  E-value=0.00068  Score=58.90  Aligned_cols=68  Identities=12%  Similarity=0.114  Sum_probs=58.8

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE  185 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~  185 (296)
                      +..++++.+.  ..++..+||..+|.|..+..++++. |+.+++++|. |.+++.+++ ..+|++++.++|.+
T Consensus        45 Ll~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           45 LLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA  115 (347)
T ss_dssp             TTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred             cHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            4577888887  6788999999999999999999985 7889999999 999998865 46889999998876

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.17  E-value=0.00089  Score=56.78  Aligned_cols=106  Identities=13%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhc---cCCC-CCCeeEEec-cCCC-CCCcc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNG---LDSD-LANLKYVGG-DMFE-AISPA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~~-~~ri~~~~~-D~~~-~~p~~  190 (296)
                      ..+.+.+.  +.+..+|||+||++|.++...+....-.++.++|+ ..-.+.   .++. -.-|.+..+ |++. +...+
T Consensus        84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~  161 (321)
T 3lkz_A           84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC  161 (321)
T ss_dssp             HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred             HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence            34555554  67778999999999999997777665557999998 442221   1111 133888888 8766 33458


Q ss_pred             ceeEehhhhccCCch-----HHHHHHHHHHHhcccCCCC-cEEEE
Q 022515          191 DAVLLKWILHDWNDE-----ECVKILKKCKEAITSDGKK-GKVII  229 (296)
Q Consensus       191 D~v~~~~vlh~~~d~-----~~~~iL~~~~~aL~p~~~g-G~lli  229 (296)
                      |++++.-. .--+..     ...++|.-+.+.|++   | |-+++
T Consensus       162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~  202 (321)
T 3lkz_A          162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCV  202 (321)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEE
T ss_pred             CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEE
Confidence            99887432 211221     224567777888988   5 55444

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.14  E-value=0.001  Score=56.74  Aligned_cols=97  Identities=13%  Similarity=0.091  Sum_probs=67.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHC-----CCCeEEeccc-hhH--------------------------hhccCC-----
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAF-----PKLECTCFDL-PHV--------------------------VNGLDS-----  171 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~--------------------------~~~a~~-----  171 (296)
                      ..+++||++|+..|..++.++...     |+.+++++|. +..                          ++.+++     
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            346799999999999998887654     4778998884 221                          112222     


Q ss_pred             -C-CCCeeEEeccCCCC---CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          172 -D-LANLKYVGGDMFEA---IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       172 -~-~~ri~~~~~D~~~~---~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                       . .++|+++.||+.+.   .+  .+|++++-.-.    .+.....|..+.+.|+|    |.++|+|..
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~----y~~~~~~Le~~~p~L~p----GGiIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL----YESTWDTLTNLYPKVSV----GGYVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS----HHHHHHHHHHHGGGEEE----EEEEEESSC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc----cccHHHHHHHHHhhcCC----CEEEEEcCC
Confidence             2 48999999999762   32  48998885421    13345789999999999    556666643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.00  E-value=0.01  Score=57.29  Aligned_cols=146  Identities=9%  Similarity=0.042  Sum_probs=102.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCC--------CCeEEeccchhHhhccCC-----------C------------------
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFP--------KLECTCFDLPHVVNGLDS-----------D------------------  172 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~-----------~------------------  172 (296)
                      +...||-+|||-=.....|...+|        +++++-+|.|++++.-++           .                  
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            457899999999999999988755        678888898988864322           0                  


Q ss_pred             CCCeeEEeccCCCC--C-----------Cc-cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC
Q 022515          173 LANLKYVGGDMFEA--I-----------SP-ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK  238 (296)
Q Consensus       173 ~~ri~~~~~D~~~~--~-----------p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~  238 (296)
                      .++..+++.|+.+.  +           +. .-++++--+|.+++.+++.++|+.+.+ + |   ++.+++.|.+.+...
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~e~~~~~~~  261 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIILEQLIPKGP  261 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEEEECCTTCT
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEEEeecCCCC
Confidence            14889999999872  1           11 236677788999999999999999985 4 5   588888898876543


Q ss_pred             CCCchhhhhhhhhhhhhhhcC------ccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          239 GDDKSIETQLFFDMLMMVLLT------GTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~------g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .. ++   ...+ +..+...|      ....+.++..+.|.+.||+.+....+
T Consensus       262 ~d-~f---~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~  309 (695)
T 2zwa_A          262 FE-PF---SKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM  309 (695)
T ss_dssp             TS-HH---HHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred             CC-hH---HHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence            32 22   1111 11111111      13347899999999999997766543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.84  E-value=0.0037  Score=53.75  Aligned_cols=130  Identities=22%  Similarity=0.173  Sum_probs=75.3

Q ss_pred             CCCEEEEecCCchHHHHHH----HHHCCCCe--EEeccchhHhhcc------------------CC-CCCCe--eEEecc
Q 022515          130 GLNSLVDVGGGIGTAAKAI----AKAFPKLE--CTCFDLPHVVNGL------------------DS-DLANL--KYVGGD  182 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l----~~~~p~~~--~~~~D~~~~~~~a------------------~~-~~~ri--~~~~~D  182 (296)
                      +.-+|+|+|=|+|......    .+..|..+  ++.++. ..+...                  .. ..++|  ++.-||
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            3468999999999876443    34567765  454442 111100                  00 23444  456788


Q ss_pred             CCCC---CC--ccceeEehhhhc-cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhh
Q 022515          183 MFEA---IS--PADAVLLKWILH-DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMV  256 (296)
Q Consensus       183 ~~~~---~p--~~D~v~~~~vlh-~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~  256 (296)
                      ..+.   ++  .+|++++--.-- .-|+-=...+|+++++.++|   ||++.-..                         
T Consensus       175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~p---gg~laTYt-------------------------  226 (308)
T 3vyw_A          175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDE---KGYWVSYS-------------------------  226 (308)
T ss_dssp             HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEE---EEEEEESC-------------------------
T ss_pred             HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCC---CcEEEEEe-------------------------
Confidence            7662   33  489998843210 00111124789999999999   77653210                         


Q ss_pred             hcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515          257 LLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY  295 (296)
Q Consensus       257 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  295 (296)
                             ....+++-|++|||++.++...++-..++.|.
T Consensus       227 -------aag~VRR~L~~aGF~V~k~~G~g~KReml~A~  258 (308)
T 3vyw_A          227 -------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVAS  258 (308)
T ss_dssp             -------CCHHHHHHHHHTTCEEEEEECC---CEEEEEE
T ss_pred             -------CcHHHHHHHHHCCCEEEecCCCCCCCceeEEe
Confidence                   23467788999999988776655555666554

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.47  E-value=0.0034  Score=55.30  Aligned_cols=56  Identities=11%  Similarity=0.195  Sum_probs=45.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE  185 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~  185 (296)
                      +...|||||.|.|.++..|+++....+++++++ +..+...++  ..++++++.+|+++
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  116 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence            357899999999999999999754457999998 776665543  35789999999976

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.20  E-value=0.015  Score=51.33  Aligned_cols=106  Identities=17%  Similarity=0.126  Sum_probs=73.1

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------CCCCeeEEeccCCC-C--CC-ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------DLANLKYVGGDMFE-A--IS-PAD  191 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~ri~~~~~D~~~-~--~p-~~D  191 (296)
                      ..++.+|||+-+|.|.=+.+++...++.+++..|+ +.=+...++           ...++.+...|... +  .+ .||
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            56788999999999999999999877667889998 544433221           24678888888876 2  23 499


Q ss_pred             eeEeh--------hhhc-------cCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          192 AVLLK--------WILH-------DWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       192 ~v~~~--------~vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      .|++-        .+++       .|..++       -.++|.++.+.|||   ||+|+-.......
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYsTCSl~~  289 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYSTCSLSH  289 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEEESCCCT
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEEeCCCch
Confidence            99862        1221       122221       14789999999999   8877655544443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.13  E-value=0.0059  Score=52.49  Aligned_cols=41  Identities=20%  Similarity=0.092  Sum_probs=35.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS  171 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  171 (296)
                      .++..|||++||+|..+.+.++.  +.+++++|+ +.+++.|++
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            45679999999999999998876  569999999 889888765

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.89  E-value=0.032  Score=47.37  Aligned_cols=92  Identities=16%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             cCCCCEEEEecC------CchHHHHHHHHHCCC-CeEEeccchhHhhccCCCCCCeeEEeccCCC-CC-CccceeEehhh
Q 022515          128 FEGLNSLVDVGG------GIGTAAKAIAKAFPK-LECTCFDLPHVVNGLDSDLANLKYVGGDMFE-AI-SPADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGg------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~~-p~~D~v~~~~v  198 (296)
                      .+.+.+|||+|+      -.|.+  .+.+..|. ..++.+|+.++...+.      .++.||+.+ .. .++|+|++-..
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~------~~IqGD~~~~~~~~k~DLVISDMA  178 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD------STLIGDCATVHTANKWDLIISDMY  178 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS------EEEESCGGGEEESSCEEEEEECCC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC------eEEEccccccccCCCCCEEEecCC
Confidence            456789999995      77884  34455776 6999999944433222      458899876 22 35999987221


Q ss_pred             ----hc---cC--CchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          199 ----LH---DW--NDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       199 ----lh---~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                          -|   +-  ...-+..++.=+.+.|+|   ||.+++=
T Consensus       179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK  216 (344)
T 3r24_A          179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK  216 (344)
T ss_dssp             CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             CCcCCccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence                11   11  111355667777889999   7776653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.66  E-value=0.041  Score=51.23  Aligned_cols=109  Identities=10%  Similarity=0.064  Sum_probs=70.1

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-------------CCCeEEeccc-hhHhhccCC-----CCCCeeE
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-------------PKLECTCFDL-PHVVNGLDS-----DLANLKY  178 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~-----~~~ri~~  178 (296)
                      ..+++.+.  ...+.+|+|-.||+|.++....+..             ....+.|+|+ +.+...|+-     ..+.-++
T Consensus       207 ~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I  284 (530)
T 3ufb_A          207 RFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI  284 (530)
T ss_dssp             HHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred             HHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence            34444443  3456799999999999998776532             1356899999 887776653     3344567


Q ss_pred             EeccCCC-CC------CccceeEehhhh---------ccCC-----chHHHHHHHHHHHhcc-------cCCCCcEEEEE
Q 022515          179 VGGDMFE-AI------SPADAVLLKWIL---------HDWN-----DEECVKILKKCKEAIT-------SDGKKGKVIII  230 (296)
Q Consensus       179 ~~~D~~~-~~------p~~D~v~~~~vl---------h~~~-----d~~~~~iL~~~~~aL~-------p~~~gG~lli~  230 (296)
                      ..+|.+. +.      ..||+|+.+=-.         ..++     .+....++.++.+.|+       |   ||++.++
T Consensus       285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avV  361 (530)
T 3ufb_A          285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVV  361 (530)
T ss_dssp             ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEE
T ss_pred             cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEE
Confidence            7788775 31      149999873221         1111     1122456788888886       5   8988877


Q ss_pred             e
Q 022515          231 D  231 (296)
Q Consensus       231 e  231 (296)
                      -
T Consensus       362 l  362 (530)
T 3ufb_A          362 V  362 (530)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=93.80  E-value=0.14  Score=42.75  Aligned_cols=95  Identities=18%  Similarity=0.189  Sum_probs=63.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHH-------CCCCeEEeccc-hhHhhc---------------------------------
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKA-------FPKLECTCFDL-PHVVNG---------------------------------  168 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~---------------------------------  168 (296)
                      -++.|+++|+-.|..+..++..       .++-++.++|. ..+.+.                                 
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            3579999999999988876552       45678999983 221110                                 


Q ss_pred             -cCC---CCCCeeEEeccCCCCC-------C--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          169 -LDS---DLANLKYVGGDMFEAI-------S--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       169 -a~~---~~~ri~~~~~D~~~~~-------p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                       .++   ..++|+++.|++.+..       |  .+|++++-.   ++ .+.....+..+...|+|    |.++++|.
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~-Y~~t~~~le~~~p~l~~----GGvIv~DD  217 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DL-YEPTKAVLEAIRPYLTK----GSIVAFDE  217 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CC-HHHHHHHHHHHGGGEEE----EEEEEESS
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---cc-cchHHHHHHHHHHHhCC----CcEEEEcC
Confidence             011   2488999999997622       2  378888854   11 23345789999999999    55555554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=93.14  E-value=0.25  Score=43.22  Aligned_cols=125  Identities=8%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEeccCCC-C---CC--ccceeEehhhhccCC
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A---IS--PADAVLLKWILHDWN  203 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~---~p--~~D~v~~~~vlh~~~  203 (296)
                      .+++|+-||.|.++..+.++.-.. .+..+|. +..++..+.......+..+|+.+ .   ++  .+|+++..--...|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS   82 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence            589999999999999999883212 4788898 77776665422334577888876 2   23  489999876655544


Q ss_pred             ch-------H-HHHHHHHHHHhcccCCCC--cEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515          204 DE-------E-CVKILKKCKEAITSDGKK--GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT  273 (296)
Q Consensus       204 d~-------~-~~~iL~~~~~aL~p~~~g--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~  273 (296)
                      ..       + .-.++.++.+.++..  .  -+++++|.+..-             ..        +  .+.+.+.+.|+
T Consensus        83 ~ag~~~g~~d~r~~l~~~~~~~i~~~--~~~P~~~~~ENV~~l-------------~~--------~--~~~~~i~~~l~  137 (343)
T 1g55_A           83 RIGRQGDMTDSRTNSFLHILDILPRL--QKLPKYILLENVKGF-------------EV--------S--STRDLLIQTIE  137 (343)
T ss_dssp             -------------CHHHHHHHHGGGC--SSCCSEEEEEEETTG-------------GG--------S--HHHHHHHHHHH
T ss_pred             hcCCcCCccCccchHHHHHHHHHHHh--cCCCCEEEEeCCccc-------------cC--------H--HHHHHHHHHHH
Confidence            21       1 112444444444321  1  256777765421             00        1  14567888889


Q ss_pred             hcCCceeE
Q 022515          274 YAGFSDYK  281 (296)
Q Consensus       274 ~aGf~~~~  281 (296)
                      +.||++..
T Consensus       138 ~~GY~v~~  145 (343)
T 1g55_A          138 NCGFQYQE  145 (343)
T ss_dssp             HTTEEEEE
T ss_pred             HCCCeeEE
Confidence            99987654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.48  E-value=0.098  Score=43.82  Aligned_cols=40  Identities=23%  Similarity=0.164  Sum_probs=34.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLD  170 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  170 (296)
                      .++..|||..||+|..+.+..+.  +.+++++|+ |..++.++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~  251 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN  251 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence            46679999999999999988776  679999999 88877665

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=91.51  E-value=0.41  Score=40.48  Aligned_cols=100  Identities=16%  Similarity=0.016  Sum_probs=67.9

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC----CC---ccceeEehhhh
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA----IS---PADAVLLKWIL  199 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~----~p---~~D~v~~~~vl  199 (296)
                      ...+||+=+|||.++++.++.  .-+++.+|+ +..++..++   ..+++++...|.++.    .|   .+|+|++-=-.
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY  169 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY  169 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred             CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence            456899999999999999883  578999999 887776665   457899999997651    12   49999993211


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      ..  ..+..++++.+.+..+- .++|.++|.=++..
T Consensus       170 e~--k~~~~~vl~~L~~~~~r-~~~Gi~v~WYPi~~  202 (283)
T 2oo3_A          170 ER--KEEYKEIPYAIKNAYSK-FSTGLYCVWYPVVN  202 (283)
T ss_dssp             CS--TTHHHHHHHHHHHHHHH-CTTSEEEEEEEESS
T ss_pred             CC--CcHHHHHHHHHHHhCcc-CCCeEEEEEEeccc
Confidence            10  12344556655554322 12788888766543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=91.46  E-value=0.21  Score=48.04  Aligned_cols=119  Identities=17%  Similarity=0.164  Sum_probs=71.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHC-------CC-----CeEEeccc-h---hHhhccC-----------------------
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAF-------PK-----LECTCFDL-P---HVVNGLD-----------------------  170 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~-----------------------  170 (296)
                      +.-+|+|+|-|+|.....+++.+       |.     ++++.++. |   +.+..+-                       
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44699999999999988877653       22     56788875 3   2222110                       


Q ss_pred             --C---CC--CCeeEEeccCCC---CC-----CccceeEehhhh-ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          171 --S---DL--ANLKYVGGDMFE---AI-----SPADAVLLKWIL-HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       171 --~---~~--~ri~~~~~D~~~---~~-----p~~D~v~~~~vl-h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                        +   ..  -++++.-||..+   .+     ..+|++++--.- +.-|+-=...+++.+.+.++|   |+++.-..   
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~---  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP---GGTFSTFT---  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE---EEEEEESC---
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC---CCEEEecc---
Confidence              0   11  246667788765   12     248998884321 000111124688999999998   66543110   


Q ss_pred             CCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515          235 ENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII  283 (296)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  283 (296)
                                                   .....++.|.++||.+.++.
T Consensus       212 -----------------------------~~~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          212 -----------------------------AAGFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             -----------------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred             -----------------------------CcHHHHHHHHhCCeEEEecc
Confidence                                         12356788899999877654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=90.65  E-value=0.21  Score=44.87  Aligned_cols=56  Identities=14%  Similarity=0.154  Sum_probs=43.1

Q ss_pred             CCCCEEEEecCCchHHHHHHH-HHCCC-CeEEeccc-hhHhhccCC---C-----C-CCeeEEeccCC
Q 022515          129 EGLNSLVDVGGGIGTAAKAIA-KAFPK-LECTCFDL-PHVVNGLDS---D-----L-ANLKYVGGDMF  184 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---~-----~-~ri~~~~~D~~  184 (296)
                      +++.+++|||++.|.++..++ +..+. .+++.++. |...+..++   .     . ++++++..-.-
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            577899999999999999988 56665 79999999 887766554   2     3 67777654433

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=90.57  E-value=1  Score=39.89  Aligned_cols=119  Identities=11%  Similarity=0.135  Sum_probs=75.4

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCCCCCCeeEEeccCCC-C---C-------CccceeEehhh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A---I-------SPADAVLLKWI  198 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~---~-------p~~D~v~~~~v  198 (296)
                      .+++|+=||.|.++..+.++  +.+ +..+|. +..++..+..-....++.+|+.+ .   +       +.+|+++..--
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP   80 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence            47999999999999999888  455 458888 77666554323346677888876 2   1       35899988766


Q ss_pred             hccCC--------chHHHHHHH---HHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          199 LHDWN--------DEECVKILK---KCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       199 lh~~~--------d~~~~~iL~---~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                      ...|+        |+. -.++.   ++.+.++|     +++++|.+..-...                    ......++
T Consensus        81 CQ~fS~ag~~~~~d~r-~~L~~~~~~~v~~~~P-----~~~v~ENV~gl~s~--------------------~~~~~~~~  134 (376)
T 3g7u_A           81 CQGFSSIGKGNPDDSR-NQLYMHFYRLVSELQP-----LFFLAENVPGIMQE--------------------KYSGIRNK  134 (376)
T ss_dssp             CCTTC-------CHHH-HHHHHHHHHHHHHHCC-----SEEEEEECTTTTCG--------------------GGHHHHHH
T ss_pred             CCCcccccCCCCCCch-HHHHHHHHHHHHHhCC-----CEEEEecchHhhcc--------------------CcHHHHHH
Confidence            55554        222 12333   34445566     67888876432110                    00113456


Q ss_pred             HHHHHHhcCCce
Q 022515          268 WTKLFTYAGFSD  279 (296)
Q Consensus       268 ~~~ll~~aGf~~  279 (296)
                      +. .|++.||.+
T Consensus       135 i~-~l~~~GY~v  145 (376)
T 3g7u_A          135 AF-NLVSGDYDI  145 (376)
T ss_dssp             HH-HHHHTTEEE
T ss_pred             HH-HHHcCCCcc
Confidence            66 788889876

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=90.08  E-value=2  Score=31.72  Aligned_cols=86  Identities=19%  Similarity=0.157  Sum_probs=53.4

Q ss_pred             CEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhccC
Q 022515          132 NSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHDW  202 (296)
Q Consensus       132 ~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~~  202 (296)
                      .+|+=+|+|. |......+... +.+++++|. ++.++.++  ...+.++.+|..++       ..++|++++.     .
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~--~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~   79 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELR--ERGVRAVLGNAANEEIMQLAHLECAKWLILT-----I   79 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHH--HTTCEEEESCTTSHHHHHHTTGGGCSEEEEC-----C
T ss_pred             CCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHH--HcCCCEEECCCCCHHHHHhcCcccCCEEEEE-----C
Confidence            5788899875 44444444443 678999999 88777765  24577888998762       1358888764     2


Q ss_pred             Cc-hHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          203 ND-EECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       203 ~d-~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ++ .....+.. ..+.+.|   +.+++.
T Consensus        80 ~~~~~n~~~~~-~a~~~~~---~~~iia  103 (140)
T 3fwz_A           80 PNGYEAGEIVA-SARAKNP---DIEIIA  103 (140)
T ss_dssp             SCHHHHHHHHH-HHHHHCS---SSEEEE
T ss_pred             CChHHHHHHHH-HHHHHCC---CCeEEE
Confidence            33 33333444 4455666   555443

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=90.03  E-value=1.6  Score=37.71  Aligned_cols=121  Identities=11%  Similarity=0.077  Sum_probs=74.2

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCC-CCCCeeEEeccCCC----CCCccceeEehhhhccCC
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDS-DLANLKYVGGDMFE----AISPADAVLLKWILHDWN  203 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~----~~p~~D~v~~~~vlh~~~  203 (296)
                      ..+++|+-||.|.++..+.++  +.+ +..+|. +..++..+. ..+..   .+|+.+    ..+.+|+++..--...|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~---~~Di~~~~~~~~~~~D~l~~gpPCQ~fS   85 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP---EGDITQVNEKTIPDHDILCAGFPCQAFS   85 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC---BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred             CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC---cCCHHHcCHhhCCCCCEEEECCCCCCcc
Confidence            468999999999999999887  454 566888 766655443 11111   577765    245689998865555443


Q ss_pred             ---------chH--HHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHH
Q 022515          204 ---------DEE--CVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLF  272 (296)
Q Consensus       204 ---------d~~--~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll  272 (296)
                               |+.  ...-+-++.+.++|     +++++|.+..-..                    ..+..+.+.+.+.|
T Consensus        86 ~ag~~~g~~d~r~~L~~~~~r~i~~~~P-----~~~~~ENV~gl~~--------------------~~~~~~~~~i~~~l  140 (327)
T 2c7p_A           86 ISGKQKGFEDSRGTLFFDIARIVREKKP-----KVVFMENVKNFAS--------------------HDNGNTLEVVKNTM  140 (327)
T ss_dssp             TTSCCCGGGSTTSCHHHHHHHHHHHHCC-----SEEEEEEEGGGGT--------------------GGGGHHHHHHHHHH
T ss_pred             hhcccCCCcchhhHHHHHHHHHHHhccC-----cEEEEeCcHHHHh--------------------ccccHHHHHHHHHH
Confidence                     221  11122234445577     6788887643110                    01112457788889


Q ss_pred             HhcCCceeE
Q 022515          273 TYAGFSDYK  281 (296)
Q Consensus       273 ~~aGf~~~~  281 (296)
                      ++.||.+..
T Consensus       141 ~~~GY~v~~  149 (327)
T 2c7p_A          141 NELDYSFHA  149 (327)
T ss_dssp             HHTTBCCEE
T ss_pred             HhCCCEEEE
Confidence            999987643

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=89.95  E-value=0.16  Score=35.74  Aligned_cols=47  Identities=17%  Similarity=0.180  Sum_probs=37.6

Q ss_pred             HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .+|.--.++.|+..|.+  ++.|+.|||+.+|+++..+.++|......|
T Consensus        18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~G   64 (102)
T 3pqk_A           18 KTLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESG   64 (102)
T ss_dssp             HHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            34445566777778865  789999999999999999999998876654

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=89.80  E-value=0.068  Score=34.75  Aligned_cols=42  Identities=19%  Similarity=0.272  Sum_probs=33.0

Q ss_pred             HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +..|+++|.+.+.++|..|||+.+|++...+.+.+..+-..|
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G   53 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKED   53 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            455777886533689999999999999999888777766554

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=89.69  E-value=0.64  Score=40.30  Aligned_cols=127  Identities=13%  Similarity=0.049  Sum_probs=77.7

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCe-E-Eeccc-hhHhhccCC-CCCCeeEEeccCCC-C---CC--ccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLE-C-TCFDL-PHVVNGLDS-DLANLKYVGGDMFE-A---IS--PADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~---~p--~~D~v~~~~vl  199 (296)
                      ...+++|+-||.|.++..+.+..-..+ + ..+|+ +..++..+. ..+.  +..+|+.+ .   ++  .+|+++...-.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpPC   86 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPPC   86 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCCC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCCc
Confidence            346899999999999999988732234 4 58898 766655443 1121  55678776 2   23  48999876665


Q ss_pred             ccC-----------CchHHHHHHHHHHH-hcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHH
Q 022515          200 HDW-----------NDEECVKILKKCKE-AITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKE  267 (296)
Q Consensus       200 h~~-----------~d~~~~~iL~~~~~-aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e  267 (296)
                      ..|           .|+. -.++.++.+ .++.....-+++++|.+..-             ..        +  .+.+.
T Consensus        87 Q~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~~~~~~P~~~~lENV~gl-------------~~--------~--~~~~~  142 (327)
T 3qv2_A           87 QPYNNSIMSKHKDINDPR-AKSVLHLYRDILPYLINKPKHIFIENVPLF-------------KE--------S--LVFKE  142 (327)
T ss_dssp             TTCSHHHHTTTCTTTCGG-GHHHHHHHHTTGGGCSSCCSEEEEEECGGG-------------GG--------S--HHHHH
T ss_pred             cCcccccCCCCCCCcccc-chhHHHHHHHHHHHhccCCCEEEEEchhhh-------------cC--------h--HHHHH
Confidence            555           2332 245555555 44320001378888865421             00        1  14577


Q ss_pred             HHHHHHhcCCceeEE
Q 022515          268 WTKLFTYAGFSDYKI  282 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~  282 (296)
                      +.+.|++.||.+...
T Consensus       143 i~~~l~~~GY~v~~~  157 (327)
T 3qv2_A          143 IYNILIKNQYYIKDI  157 (327)
T ss_dssp             HHHHHHHTTCEEEEE
T ss_pred             HHHHHHhCCCEEEEE
Confidence            888899999986443

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=89.68  E-value=0.51  Score=45.11  Aligned_cols=119  Identities=20%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             CCEEEEecCCchHHHHHHHHHC-------CC-----CeEEeccc-h---hHhhccC-----------C------------
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAF-------PK-----LECTCFDL-P---HVVNGLD-----------S------------  171 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~-----------~------------  171 (296)
                      .-+|+|+|-|+|......++.+       |.     ++++.++. |   +.+..+-           +            
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            3589999999999888776653       22     45788875 2   3332110           0            


Q ss_pred             -----C--CCCeeEEeccCCC---CC-----CccceeEehhhhcc-CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          172 -----D--LANLKYVGGDMFE---AI-----SPADAVLLKWILHD-WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       172 -----~--~~ri~~~~~D~~~---~~-----p~~D~v~~~~vlh~-~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                           .  .-++++.-||..+   .+     ..+|++++--.--. -|+-=...+++.+++.++|   ||++.-..    
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~---g~~~~t~~----  219 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARP---GGTLATFT----  219 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEE---EEEEEESC----
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCC---CCEEEecc----
Confidence                 0  1234456677654   12     23899888432111 0110124689999999999   76643211    


Q ss_pred             CCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEE
Q 022515          236 NKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  284 (296)
                                                  ....+++.|.++||.+.+...
T Consensus       220 ----------------------------~~~~vr~~L~~aGf~v~~~~~  240 (676)
T 3ps9_A          220 ----------------------------SAGFVRRGLQDAGFTMQKRKG  240 (676)
T ss_dssp             ----------------------------CCHHHHHHHHHHTCEEEEEEC
T ss_pred             ----------------------------CcHHHHHHHHhCCeEEEeccc
Confidence                                        113567778889998776543

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=89.24  E-value=0.11  Score=35.03  Aligned_cols=41  Identities=10%  Similarity=0.034  Sum_probs=33.3

Q ss_pred             HcCcchhcccCCCCCCHHHHHHHcCCCCc-chhhhHHHhhhcC
Q 022515           37 QLGIPDIISKHGKPMTLNELVSALTINPS-KSRCQLRTWFQND   78 (296)
Q Consensus        37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~-~l~~~l~~~~~~~   78 (296)
                      +-.|.+.|... +|.|+.+||+.+|+.+. .++++|...-+.|
T Consensus        13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eG   54 (79)
T 1xmk_A           13 KEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDMERQG   54 (79)
T ss_dssp             HHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHc-CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCC
Confidence            44456667654 79999999999999998 9999888877665

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=89.09  E-value=0.16  Score=34.05  Aligned_cols=38  Identities=11%  Similarity=0.142  Sum_probs=32.2

Q ss_pred             cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      |.+.|.+. +.+++.|||+.+++++.-++|.|..+.+.|
T Consensus         7 Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G   44 (78)
T 1xn7_A            7 VRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMG   44 (78)
T ss_dssp             HHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            55677664 799999999999999999999888887655

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=88.66  E-value=0.12  Score=36.15  Aligned_cols=47  Identities=15%  Similarity=0.198  Sum_probs=39.1

Q ss_pred             HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .+|.--.++.|+..|.+  ++.|+.|||+.+|+++..+.++|......|
T Consensus        18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~G   64 (98)
T 3jth_A           18 KAMANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDG   64 (98)
T ss_dssp             HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            45555667888888986  799999999999999999999888876654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=88.58  E-value=2  Score=36.87  Aligned_cols=83  Identities=18%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CEEEEecCCc--hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEehhhhccCCchHH
Q 022515          132 NSLVDVGGGI--GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLKWILHDWNDEEC  207 (296)
Q Consensus       132 ~~vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~~~  207 (296)
                      .+|.=||+|.  +.++..|.+.....+++++|. ++.++.+.+. +-+.-...|..+ ...++|+|++.     .|....
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~-G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~  107 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-GIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF  107 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-TSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC-CCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence            6899999774  234444554432238999998 7777666531 111112234333 34468999884     355566


Q ss_pred             HHHHHHHHHhccc
Q 022515          208 VKILKKCKEAITS  220 (296)
Q Consensus       208 ~~iL~~~~~aL~p  220 (296)
                      ..+++++...++|
T Consensus       108 ~~vl~~l~~~l~~  120 (314)
T 3ggo_A          108 REIAKKLSYILSE  120 (314)
T ss_dssp             HHHHHHHHHHSCT
T ss_pred             HHHHHHHhhccCC
Confidence            7889999999998

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=87.64  E-value=0.19  Score=34.51  Aligned_cols=39  Identities=13%  Similarity=0.130  Sum_probs=32.9

Q ss_pred             cchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcCC
Q 022515           40 IPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQNDD   79 (296)
Q Consensus        40 lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~~   79 (296)
                      |.+.|.+. +.+++.|||+.+++++.-++|.|..+.+.|.
T Consensus         7 Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~   45 (87)
T 2k02_A            7 VRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAMGK   45 (87)
T ss_dssp             HHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence            45667664 7999999999999999999999988877663

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=87.44  E-value=0.14  Score=37.31  Aligned_cols=48  Identities=13%  Similarity=0.119  Sum_probs=40.1

Q ss_pred             HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .++|.--.++.|+..|.+  +|.++.|||+.+|+++..+.++|......|
T Consensus        12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~G   59 (118)
T 3f6o_A           12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSG   59 (118)
T ss_dssp             HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCC
Confidence            355666678888888885  799999999999999999999988876654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.87  E-value=0.73  Score=40.04  Aligned_cols=89  Identities=18%  Similarity=0.122  Sum_probs=59.9

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEeccCCCCCC-ccceeEehhhhccCC
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVGGDMFEAIS-PADAVLLKWILHDWN  203 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~  203 (296)
                      ..++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++. .+.+-   .|-. ... ++|+++-.-     .
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~v~---~~~~-~~~~~~D~vid~~-----g  243 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSMGVKHFY---TDPK-QCKEELDFIISTI-----P  243 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHTTCSEEE---SSGG-GCCSCEEEEEECC-----C
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhcCCCeec---CCHH-HHhcCCCEEEECC-----C
Confidence            66788999999875 88889999886 669999887 6666666542 33222   2211 121 688887532     2


Q ss_pred             chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          204 DEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      .+   ..++.+.+.|+|   +|+++++-.
T Consensus       244 ~~---~~~~~~~~~l~~---~G~iv~~G~  266 (348)
T 3two_A          244 TH---YDLKDYLKLLTY---NGDLALVGL  266 (348)
T ss_dssp             SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred             cH---HHHHHHHHHHhc---CCEEEEECC
Confidence            21   246778889999   899988754

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=86.86  E-value=0.24  Score=34.38  Aligned_cols=46  Identities=11%  Similarity=0.175  Sum_probs=37.8

Q ss_pred             HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .++..-.++.|+..| .  ++.++.|||+.+|+++..+.+++......|
T Consensus        26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~is~~tv~~~L~~L~~~G   71 (96)
T 1y0u_A           26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSLSKKQLDYHLKVLEAGF   71 (96)
T ss_dssp             HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            345555677888888 6  789999999999999999999888776655

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=86.06  E-value=0.19  Score=33.61  Aligned_cols=31  Identities=16%  Similarity=0.263  Sum_probs=26.6

Q ss_pred             CCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           48 GKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        48 ~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      ++|.|+.|||+.+|+++..+++.|...-+.|
T Consensus        22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG   52 (77)
T 2jt1_A           22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVG   52 (77)
T ss_dssp             TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            4799999999999999888888888776655

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=85.99  E-value=1.3  Score=39.21  Aligned_cols=37  Identities=22%  Similarity=0.380  Sum_probs=28.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHC-------CCCeEEeccc-hhHh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAF-------PKLECTCFDL-PHVV  166 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~-------p~~~~~~~D~-~~~~  166 (296)
                      ..-+|+|+|+|+|.++..+++..       ..++++++|. |...
T Consensus        80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr  124 (387)
T 1zkd_A           80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR  124 (387)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred             CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHH
Confidence            34589999999999999888642       3458999998 5433

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=85.86  E-value=0.21  Score=35.48  Aligned_cols=46  Identities=15%  Similarity=0.179  Sum_probs=36.4

Q ss_pred             HHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           31 TLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        31 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +|..-.++.|+..|.+  ++.|+.|||+.+|+++..+.+++......|
T Consensus        22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~is~stvs~~L~~L~~~G   67 (106)
T 1r1u_A           22 ALGDYNRIRIMELLSV--SEASVGHISHQLNLSQSNVSHQLKLLKSVH   67 (106)
T ss_dssp             HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            3444456677777775  789999999999999999999888776554

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=85.66  E-value=0.23  Score=33.59  Aligned_cols=42  Identities=14%  Similarity=0.078  Sum_probs=34.0

Q ss_pred             HHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           35 AIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        35 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .....|.+.|.+. + .|+.|||+++|++...++++|....++|
T Consensus        17 ~~~~~IL~lL~~~-g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG   58 (82)
T 1oyi_A           17 EIVCEAIKTIGIE-G-ATAAQLTRQLNMEKREVNKALYDLQRSA   58 (82)
T ss_dssp             HHHHHHHHHHSSS-T-EEHHHHHHHSSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc-C-CCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            3455677788763 4 9999999999999999999888877655

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=85.47  E-value=0.5  Score=40.93  Aligned_cols=93  Identities=19%  Similarity=0.114  Sum_probs=60.8

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEe--ccCCCC----CCccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVG--GDMFEA----ISPADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~--~D~~~~----~p~~D~v~~~~vl  199 (296)
                      ..++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++......+-.  .|+.+.    .+++|+++...  
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~--  240 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTA--  240 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESS--
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeC--
Confidence            56778999999764 99999999987 669999998 777776664222111111  111110    12578776532  


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                         ..   ...++.+.+.|+|   +|+++++-.
T Consensus       241 ---g~---~~~~~~~~~~l~~---~G~iv~~G~  264 (340)
T 3s2e_A          241 ---VS---PKAFSQAIGMVRR---GGTIALNGL  264 (340)
T ss_dssp             ---CC---HHHHHHHHHHEEE---EEEEEECSC
T ss_pred             ---CC---HHHHHHHHHHhcc---CCEEEEeCC
Confidence               11   2457888899999   899887653

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=85.47  E-value=0.28  Score=35.84  Aligned_cols=49  Identities=10%  Similarity=0.214  Sum_probs=39.8

Q ss_pred             HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .++|.--.++.|+..|... ++.|+.|||+.+|+++..+.++|......|
T Consensus        36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~~~G   84 (122)
T 1u2w_A           36 LKAIADENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLYKQG   84 (122)
T ss_dssp             HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            4455556678899999742 789999999999999999999888776554

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=85.32  E-value=0.41  Score=37.84  Aligned_cols=90  Identities=17%  Similarity=0.093  Sum_probs=57.7

Q ss_pred             cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C--------C--Ccccee
Q 022515          128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A--------I--SPADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~--------~--p~~D~v  193 (296)
                      ..++.+||.+|  ||.|..+..+++.. +.+++++|. ++..+.+++......+   |..+ +        .  .++|++
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~~~---d~~~~~~~~~~~~~~~~~~~D~v  111 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVG---DSRSVDFADEILELTDGYGVDVV  111 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEE---ETTCSTHHHHHHHHTTTCCEEEE
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEe---eCCcHHHHHHHHHHhCCCCCeEE
Confidence            56778999999  47788888777765 568888888 6666555432211111   2221 1        1  147888


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      +..-     ..    ..++.+.+.|+|   ||+++.+-..
T Consensus       112 i~~~-----g~----~~~~~~~~~l~~---~G~~v~~g~~  139 (198)
T 1pqw_A          112 LNSL-----AG----EAIQRGVQILAP---GGRFIELGKK  139 (198)
T ss_dssp             EECC-----CT----HHHHHHHHTEEE---EEEEEECSCG
T ss_pred             EECC-----ch----HHHHHHHHHhcc---CCEEEEEcCC
Confidence            7532     11    357788899999   8998887643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=85.14  E-value=9.9  Score=28.32  Aligned_cols=85  Identities=19%  Similarity=0.125  Sum_probs=49.2

Q ss_pred             CCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-C------CCccceeEehhhh
Q 022515          129 EGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A------ISPADAVLLKWIL  199 (296)
Q Consensus       129 ~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~------~p~~D~v~~~~vl  199 (296)
                      ....+|+=+|+|. |......+... +.+++++|. ++.++.++ ....+.++.+|..+ +      ..++|+++..-  
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~-~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~--   92 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLN-SEFSGFTVVGDAAEFETLKECGMEKADMVFAFT--   92 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSC-TTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS--
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHH-hcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe--
Confidence            3557899999865 44444444443 568999998 77666654 12335566677543 1      23588887742  


Q ss_pred             ccCCchHHHHHHHHHHHhccc
Q 022515          200 HDWNDEECVKILKKCKEAITS  220 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p  220 (296)
                         ++......+..+.+.+.|
T Consensus        93 ---~~~~~~~~~~~~~~~~~~  110 (155)
T 2g1u_A           93 ---NDDSTNFFISMNARYMFN  110 (155)
T ss_dssp             ---SCHHHHHHHHHHHHHTSC
T ss_pred             ---CCcHHHHHHHHHHHHHCC
Confidence               333333444445555554

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=85.07  E-value=2.9  Score=36.58  Aligned_cols=96  Identities=15%  Similarity=0.208  Sum_probs=61.0

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-eeEEeccCCC---C---C--CccceeEe
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-LKYVGGDMFE---A---I--SPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~D~~~---~---~--p~~D~v~~  195 (296)
                      ..++.+||-+|+|. |.++..+++....-+++++|. ++-.+.+++ ..+. +.+...|+.+   .   .  .++|+++-
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid  259 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIE  259 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEE
Confidence            56778999999866 888899998873338899987 666666654 2221 1111122211   0   1  15888875


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      .-     ...   ..++.+.+.|++   ||+++++....
T Consensus       260 ~~-----G~~---~~~~~~~~~l~~---~G~vv~~G~~~  287 (370)
T 4ej6_A          260 CA-----GVA---ETVKQSTRLAKA---GGTVVILGVLP  287 (370)
T ss_dssp             CS-----CCH---HHHHHHHHHEEE---EEEEEECSCCC
T ss_pred             CC-----CCH---HHHHHHHHHhcc---CCEEEEEeccC
Confidence            32     222   457888889999   99998876543

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=84.98  E-value=4  Score=34.13  Aligned_cols=83  Identities=12%  Similarity=0.147  Sum_probs=50.0

Q ss_pred             CEEEEecCCc--hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHH
Q 022515          132 NSLVDVGGGI--GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECV  208 (296)
Q Consensus       132 ~~vLDvGgG~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~  208 (296)
                      .+|.=||+|.  +.++..|.+..++.+++++|. ++.++.+.+. ..+.....|..+...++|+|++.     .+.....
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~   80 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALER-GIVDEATADFKVFAALADVIILA-----VPIKKTI   80 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-TSCSEEESCTTTTGGGCSEEEEC-----SCHHHHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHc-CCcccccCCHHHhhcCCCEEEEc-----CCHHHHH
Confidence            5788899886  334445555544678999998 6666554321 11111223333333468998884     3555556


Q ss_pred             HHHHHHHHh-ccc
Q 022515          209 KILKKCKEA-ITS  220 (296)
Q Consensus       209 ~iL~~~~~a-L~p  220 (296)
                      .+++.+... +++
T Consensus        81 ~v~~~l~~~~l~~   93 (290)
T 3b1f_A           81 DFIKILADLDLKE   93 (290)
T ss_dssp             HHHHHHHTSCCCT
T ss_pred             HHHHHHHhcCCCC
Confidence            788888777 877

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=84.97  E-value=0.25  Score=34.19  Aligned_cols=47  Identities=15%  Similarity=0.113  Sum_probs=37.4

Q ss_pred             HHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           31 TLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        31 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      ++..-.++.|+..|.+ +++.|..|||+.+|+++..+.+++......|
T Consensus        20 ~l~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~g   66 (99)
T 3cuo_A           20 AMSHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEG   66 (99)
T ss_dssp             HHCSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred             HhCChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            4444566778888876 3589999999999999999999888876655

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=84.96  E-value=0.39  Score=42.20  Aligned_cols=94  Identities=19%  Similarity=0.172  Sum_probs=60.5

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC----C-CccceeEehh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA----I-SPADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~----~-p~~D~v~~~~  197 (296)
                      ..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++ ..+.+ .....|+.+.    . .++|+++-.-
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~  266 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST  266 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECC
Confidence            56778999999886 88899999876 55 6888887 766666654 22211 1111121111    1 1488887532


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                           ..   ...++.+.+.|+|   ||+++++-..
T Consensus       267 -----g~---~~~~~~~~~~l~~---~G~iv~~G~~  291 (371)
T 1f8f_A          267 -----GS---PEILKQGVDALGI---LGKIAVVGAP  291 (371)
T ss_dssp             -----CC---HHHHHHHHHTEEE---EEEEEECCCC
T ss_pred             -----CC---HHHHHHHHHHHhc---CCEEEEeCCC
Confidence                 11   1457888899999   8998887654

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=84.94  E-value=0.32  Score=35.56  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=37.4

Q ss_pred             HHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           31 TLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        31 ~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +|.--.++.|+..|.+  ++.++.|||+.+|+++..+.+++......|
T Consensus        42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~G   87 (122)
T 1r1t_A           42 VLADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLR   87 (122)
T ss_dssp             HHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            3444467778888875  789999999999999999999888877655

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=84.72  E-value=0.56  Score=41.68  Aligned_cols=102  Identities=15%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCC-eeEEeccC-CCC-----CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLAN-LKYVGGDM-FEA-----IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~r-i~~~~~D~-~~~-----~p-~~D~v~~~  196 (296)
                      +.++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++.... +.+...|+ .+.     .. ++|+++-.
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~  261 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDA  261 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence            66788999999876 89999999876 55 8999997 7777777642221 11111222 110     11 48988754


Q ss_pred             hhhccCC--c----hHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          197 WILHDWN--D----EECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       197 ~vlh~~~--d----~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      ---....  .    ......++.+.++|++   ||+++++-..
T Consensus       262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~---gG~iv~~G~~  301 (398)
T 2dph_A          262 VGFEAHGLGDEANTETPNGALNSLFDVVRA---GGAIGIPGIY  301 (398)
T ss_dssp             SCTTCBCSGGGTTSBCTTHHHHHHHHHEEE---EEEEECCSCC
T ss_pred             CCCccccccccccccccHHHHHHHHHHHhc---CCEEEEeccc
Confidence            3211000  0    0001357888899999   8998876543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=84.08  E-value=2.7  Score=36.52  Aligned_cols=92  Identities=13%  Similarity=0.110  Sum_probs=59.7

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCC-eEEeccc-hhHhhccCCC-CCCeeEEec-----cCCCC-----CCcccee
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSD-LANLKYVGG-----DMFEA-----ISPADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~ri~~~~~-----D~~~~-----~p~~D~v  193 (296)
                      ..++.+||-+|+|. |.++..+++.. +. +++++|. ++-.+.+++. .+.+ +...     |+.+.     ..++|++
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~i~~~~~~g~D~v  246 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEIGADLV-LQISKESPQEIARKVEGQLGCKPEVT  246 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCSEE-EECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEE-EcCcccccchHHHHHHHHhCCCCCEE
Confidence            56778999999875 88999999987 55 8999987 6666666542 2211 1111     11111     1258888


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +-.-     ..+   ..++.+.++|+|   ||+++++-.
T Consensus       247 id~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~  274 (356)
T 1pl8_A          247 IECT-----GAE---ASIQAGIYATRS---GGTLVLVGL  274 (356)
T ss_dssp             EECS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred             EECC-----CCh---HHHHHHHHHhcC---CCEEEEEec
Confidence            7532     222   346778889999   999988754

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=83.24  E-value=0.38  Score=32.22  Aligned_cols=39  Identities=18%  Similarity=0.243  Sum_probs=30.9

Q ss_pred             CcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           39 GIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        39 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .|++.|.+. ++.|..|||+.+|+++..+++.|..+...|
T Consensus         4 ~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~G   42 (81)
T 2htj_A            4 EILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAG   42 (81)
T ss_dssp             HHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            456666653 689999999999999999998887766544

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=82.87  E-value=0.37  Score=36.74  Aligned_cols=49  Identities=12%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           28 NSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        28 ~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      ..++|.--.++.|+..|.+  ++.|+.|||+.+|+++..+.++|......|
T Consensus        51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgls~stvs~hL~~L~~aG   99 (151)
T 3f6v_A           51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPASRSAISQHLRVLTEAG   99 (151)
T ss_dssp             HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            4566777789999999985  799999999999999999999988876655

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=82.85  E-value=0.35  Score=34.47  Aligned_cols=43  Identities=9%  Similarity=0.065  Sum_probs=34.9

Q ss_pred             HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           34 CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        34 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .-.++.|+..|..  ++.|+.|||+.+|+++..+.+++......|
T Consensus        20 ~~~r~~IL~~L~~--~~~~~~ela~~l~is~~tv~~~l~~L~~~g   62 (114)
T 2oqg_A           20 DETRWEILTELGR--ADQSASSLATRLPVSRQAIAKHLNALQACG   62 (114)
T ss_dssp             CHHHHHHHHHHHH--SCBCHHHHHHHSSSCHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            3456667777754  789999999999999999999888876655

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=82.74  E-value=1.7  Score=37.67  Aligned_cols=125  Identities=10%  Similarity=0.129  Sum_probs=74.8

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCe-EEeccc-hhHhhccCCCCCCeeEEeccCCC-C---CC--ccceeEehhhhccCC
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLE-CTCFDL-PHVVNGLDSDLANLKYVGGDMFE-A---IS--PADAVLLKWILHDWN  203 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~---~p--~~D~v~~~~vlh~~~  203 (296)
                      .+++|+=||.|.++..+.+..-+.+ +..+|+ +..++.-+..-....+..+|+.+ .   ++  .+|+++...-...|+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS   83 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT   83 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence            4799999999999999988742223 567888 66665444322234466778776 2   23  479888765555443


Q ss_pred             ---------chHHHHHHHHHHHhcccCCCC-cEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHH
Q 022515          204 ---------DEECVKILKKCKEAITSDGKK-GKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFT  273 (296)
Q Consensus       204 ---------d~~~~~iL~~~~~aL~p~~~g-G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~  273 (296)
                               |+. -.++.++.+.++..  . -+++++|.+..-.             .        +  .+.+.+.+.|+
T Consensus        84 ~ag~~~~~~d~r-~~L~~~~~r~i~~~--~~P~~~vlENV~gl~-------------~--------~--~~~~~i~~~l~  137 (333)
T 4h0n_A           84 RNGKYLDDNDPR-TNSFLYLIGILDQL--DNVDYILMENVKGFE-------------N--------S--TVRNLFIDKLK  137 (333)
T ss_dssp             ETTEECCTTCTT-SCCHHHHHHHGGGC--TTCCEEEEEECTTGG-------------G--------S--HHHHHHHHHHH
T ss_pred             hhhhccCCcCcc-cccHHHHHHHHHHh--cCCCEEEEecchhhh-------------h--------h--hHHHHHHHHHH
Confidence                     221 12344444444321  1 2678888654210             0        0  13467888899


Q ss_pred             hcCCceeEE
Q 022515          274 YAGFSDYKI  282 (296)
Q Consensus       274 ~aGf~~~~~  282 (296)
                      +.||.+...
T Consensus       138 ~~GY~v~~~  146 (333)
T 4h0n_A          138 ECNFIYQEF  146 (333)
T ss_dssp             HTTEEEEEE
T ss_pred             hCCCeEEEE
Confidence            999986543

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=82.50  E-value=0.19  Score=35.94  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=34.2

Q ss_pred             HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           34 CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        34 ~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .-.++.|+..|.+  ++.|+.|||+.+|+++..+.+++......|
T Consensus        24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~G   66 (108)
T 2kko_A           24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGG   66 (108)
T ss_dssp             TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            3345566677765  789999999999999999999887776554

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=82.38  E-value=2.9  Score=30.70  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=42.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHH-----HHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           10 TELLEAQTHVWNHIFNFINSMTLK-----CAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~~~l~-----~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +++......+...+...+...+-.     +..++.++..|... +++|..+||+.+++++..+.+.+......|
T Consensus         7 ~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~~G   79 (142)
T 3ech_A            7 PDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEGRN   79 (142)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC---CHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence            344444444444444443333332     34666678888764 689999999999999999998777766544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=82.25  E-value=3.9  Score=35.83  Aligned_cols=94  Identities=15%  Similarity=0.072  Sum_probs=60.5

Q ss_pred             cCCCCEEEEecCC-chHHHHHHHHHCCCC-eEEeccc-hhHhhccCCCCCCeeEEec----cCCCC-----CCccceeEe
Q 022515          128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKL-ECTCFDL-PHVVNGLDSDLANLKYVGG----DMFEA-----ISPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~----D~~~~-----~p~~D~v~~  195 (296)
                      .+++.+||=+|+| .|.++..+++.. +. +++++|. ++-.+.+++......+...    |+.+.     ..++|+++-
T Consensus       191 ~~~g~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid  269 (378)
T 3uko_A          191 VEPGSNVAIFGLGTVGLAVAEGAKTA-GASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE  269 (378)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHH-TCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence            5677889999976 488888888876 55 8999997 7777777652211111111    11110     125888875


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEeee
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKK-GKVIIIDMI  233 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~~  233 (296)
                      .-     ..+   ..++.+.+.+++   | |+++++-..
T Consensus       270 ~~-----g~~---~~~~~~~~~l~~---g~G~iv~~G~~  297 (378)
T 3uko_A          270 CI-----GNV---SVMRAALECCHK---GWGTSVIVGVA  297 (378)
T ss_dssp             CS-----CCH---HHHHHHHHTBCT---TTCEEEECSCC
T ss_pred             CC-----CCH---HHHHHHHHHhhc---cCCEEEEEccc
Confidence            32     222   457888899998   8 998887653

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=82.08  E-value=0.34  Score=32.34  Aligned_cols=42  Identities=12%  Similarity=0.078  Sum_probs=32.6

Q ss_pred             HHcCcchhcccCCC---CCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           36 IQLGIPDIISKHGK---PMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        36 ~~l~lf~~L~~~~~---~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .+..|+++|.+. +   ++|+.|||+++|++...+.++|...-+.|
T Consensus        15 ~~~~IL~~L~~~-~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G   59 (77)
T 1qgp_A           15 QEQRILKFLEEL-GEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG   59 (77)
T ss_dssp             HHHHHHHHHHHH-CSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc-CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            345576777653 4   79999999999999998888887766554

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=82.00  E-value=2.5  Score=36.61  Aligned_cols=92  Identities=15%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEe---ccCCCC----C-----Cccce
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVG---GDMFEA----I-----SPADA  192 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~---~D~~~~----~-----p~~D~  192 (296)
                      ..++.+||-+|+|. |.++..+++.. +.++++.|. ++-.+.+++. .+. .+..   .|+.+.    .     .++|+
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~-~~~~~~~~~~~~~i~~~~~~~~g~g~D~  243 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADV-TLVVDPAKEEESSIIERIRSAIGDLPNV  243 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSE-EEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCE-EEcCcccccHHHHHHHHhccccCCCCCE
Confidence            56778999999765 88888898876 667888887 6666666542 221 1111   122111    1     24888


Q ss_pred             eEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          193 VLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       193 v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ++-.-     ..+   ..++.+.++|+|   +|+++++-.
T Consensus       244 vid~~-----g~~---~~~~~~~~~l~~---~G~iv~~G~  272 (352)
T 1e3j_A          244 TIDCS-----GNE---KCITIGINITRT---GGTLMLVGM  272 (352)
T ss_dssp             EEECS-----CCH---HHHHHHHHHSCT---TCEEEECSC
T ss_pred             EEECC-----CCH---HHHHHHHHHHhc---CCEEEEEec
Confidence            87532     222   347778889999   999988754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=81.47  E-value=5.2  Score=35.72  Aligned_cols=89  Identities=15%  Similarity=0.135  Sum_probs=55.1

Q ss_pred             CCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhcc
Q 022515          131 LNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHD  201 (296)
Q Consensus       131 ~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~  201 (296)
                      ..+|+=+|+|. |......+... +..++++|. ++.++.+++  ..+.++.||..++       ...+|++++.-    
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~-g~~vvvId~d~~~v~~~~~--~g~~vi~GDat~~~~L~~agi~~A~~viv~~----   76 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS-GVKMVVLDHDPDHIETLRK--FGMKVFYGDATRMDLLESAGAAKAEVLINAI----   76 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT-TCCEEEEECCHHHHHHHHH--TTCCCEESCTTCHHHHHHTTTTTCSEEEECC----
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHh--CCCeEEEcCCCCHHHHHhcCCCccCEEEECC----
Confidence            35688888865 34434444443 678999999 888887752  3467788998873       23588887742    


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                       +++..-..+....+.+.|   ..++++-
T Consensus        77 -~~~~~n~~i~~~ar~~~p---~~~Iiar  101 (413)
T 3l9w_A           77 -DDPQTNLQLTEMVKEHFP---HLQIIAR  101 (413)
T ss_dssp             -SSHHHHHHHHHHHHHHCT---TCEEEEE
T ss_pred             -CChHHHHHHHHHHHHhCC---CCeEEEE
Confidence             333333334445555666   4566554

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=81.23  E-value=7.8  Score=30.55  Aligned_cols=95  Identities=13%  Similarity=0.043  Sum_probs=58.4

Q ss_pred             EEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC----CCccceeEehhhhc--cCC
Q 022515          133 SLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA----ISPADAVLLKWILH--DWN  203 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~----~p~~D~v~~~~vlh--~~~  203 (296)
                      +||=.| |+|.+..++++.+  .+.++++++. +.-....  ...+++++.+|+.++    +.+.|+++..--..  ...
T Consensus         2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~   78 (224)
T 3h2s_A            2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--LGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGR   78 (224)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSC
T ss_pred             EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc--cCCCceEEecccccccHhhcccCCEEEECCccCCCcch
Confidence            455454 5565555555532  2568888887 5544433  346799999999873    23578887654332  011


Q ss_pred             chHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          204 DEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       204 d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ........+++.++++..  |++++.+..
T Consensus        79 ~~~n~~~~~~l~~a~~~~--~~~~v~~SS  105 (224)
T 3h2s_A           79 GYLHLDFATHLVSLLRNS--DTLAVFILG  105 (224)
T ss_dssp             THHHHHHHHHHHHTCTTC--CCEEEEECC
T ss_pred             hhHHHHHHHHHHHHHHHc--CCcEEEEec
Confidence            233456678888888773  677777753

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=81.13  E-value=0.68  Score=35.58  Aligned_cols=42  Identities=7%  Similarity=0.227  Sum_probs=35.6

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .+..|.+.|.+ ++++|..+||+++|+++..+.+++..+...|
T Consensus         4 ~d~~il~~L~~-~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g   45 (162)
T 3i4p_A            4 LDRKILRILQE-DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG   45 (162)
T ss_dssp             HHHHHHHHHTT-CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            35567888876 3799999999999999999999888887766

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=80.43  E-value=13  Score=29.39  Aligned_cols=136  Identities=10%  Similarity=0.113  Sum_probs=68.9

Q ss_pred             EEEEecCCchHHHHHHHHH---CCCCeEEeccc-hh-HhhccCCCCCCeeEEeccCCCC------CCccceeEehhhhcc
Q 022515          133 SLVDVGGGIGTAAKAIAKA---FPKLECTCFDL-PH-VVNGLDSDLANLKYVGGDMFEA------ISPADAVLLKWILHD  201 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~---~p~~~~~~~D~-~~-~~~~a~~~~~ri~~~~~D~~~~------~p~~D~v~~~~vlh~  201 (296)
                      +||=.| |+|....++++.   ..+.++++++. ++ .++.......++.++.+|+.++      +.+.|+++..--.. 
T Consensus         7 ~vlVtG-asg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~-   84 (221)
T 3r6d_A            7 YITILG-AAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES-   84 (221)
T ss_dssp             EEEEES-TTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC-
T ss_pred             EEEEEe-CCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC-
Confidence            466666 444444444332   24678888888 55 4433211356799999999872      23578887654321 


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcC-ccccCHHHHHHHHHhcCCcee
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLT-GTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~rt~~e~~~ll~~aGf~~~  280 (296)
                        +-+    .+++.++++.. ..++++.+.........+.   ....+...    ..+ ....+....+.++++.|+...
T Consensus        85 --n~~----~~~~~~~~~~~-~~~~iv~iSs~~~~~~~~~---~~~~~~~~----~~~~~y~~~K~~~e~~~~~~~i~~~  150 (221)
T 3r6d_A           85 --GSD----MASIVKALSRX-NIRRVIGVSMAGLSGEFPV---ALEKWTFD----NLPISYVQGERQARNVLRESNLNYT  150 (221)
T ss_dssp             --HHH----HHHHHHHHHHT-TCCEEEEEEETTTTSCSCH---HHHHHHHH----TSCHHHHHHHHHHHHHHHHSCSEEE
T ss_pred             --Chh----HHHHHHHHHhc-CCCeEEEEeeceecCCCCc---cccccccc----ccccHHHHHHHHHHHHHHhCCCCEE
Confidence              111    34444444331 0257776655433221110   11011100    001 111245667778888898876


Q ss_pred             EEEE
Q 022515          281 KIIP  284 (296)
Q Consensus       281 ~~~~  284 (296)
                      -+.|
T Consensus       151 ~vrp  154 (221)
T 3r6d_A          151 ILRL  154 (221)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            6665

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=80.31  E-value=23  Score=29.02  Aligned_cols=94  Identities=11%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             CEEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEehhhhccCCchHH
Q 022515          132 NSLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLKWILHDWNDEEC  207 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~~~  207 (296)
                      .+||=.| + |.+..++++..  .+.++++++. +.-....  ...+++++.+|+.+ ...++|+|+.........++..
T Consensus         6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~   81 (286)
T 3ius_A            6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAI--RASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVL   81 (286)
T ss_dssp             CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHH--HHTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHH
T ss_pred             CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhH--hhCCCeEEEecccccccCCCCEEEECCCccccccHHH
Confidence            5789898 4 88888877754  2567888887 4433222  23568999999877 4446888877554443333333


Q ss_pred             HHHHHHHHHhcccCCCCcEEEEEee
Q 022515          208 VKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       208 ~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ..+++.+.+.-..   -.+++.+..
T Consensus        82 ~~l~~a~~~~~~~---~~~~v~~Ss  103 (286)
T 3ius_A           82 AALGDQIAARAAQ---FRWVGYLST  103 (286)
T ss_dssp             HHHHHHHHHTGGG---CSEEEEEEE
T ss_pred             HHHHHHHHhhcCC---ceEEEEeec
Confidence            4455544443122   256665554

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=80.12  E-value=0.77  Score=40.37  Aligned_cols=93  Identities=14%  Similarity=0.112  Sum_probs=58.6

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEeccCCCCC-CccceeEehhhhccC
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEAI-SPADAVLLKWILHDW  202 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~~-p~~D~v~~~~vlh~~  202 (296)
                      .+++.+||-+|+|. |.++..+++.. +.+++++|. ++-.+.+++ ..+.+ .....|+.+.. .++|+++-.--    
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g----  266 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVA----  266 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCS----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCC----
Confidence            66788999999875 88888898876 678888886 666666554 22211 11111111111 35888875321    


Q ss_pred             CchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          203 NDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                       .+   ..++.+.+.|+|   +|+++.+-.
T Consensus       267 -~~---~~~~~~~~~l~~---~G~iv~~G~  289 (369)
T 1uuf_A          267 -AP---HNLDDFTTLLKR---DGTMTLVGA  289 (369)
T ss_dssp             -SC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred             -CH---HHHHHHHHHhcc---CCEEEEecc
Confidence             11   235677788999   899887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	1e-79
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	3e-73
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	2e-54
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	2e-38
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	8e-33
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	3e-22
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	6e-15
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	1e-11
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	6e-11
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	3e-08
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	5e-04

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  239 bits (611), Expect = 1e-79
 Identities = 116/227 (51%), Positives = 153/227 (67%), Gaps = 3/227 (1%)

Query: 70  QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFE 129
           +L+ W   +D T F    G   W++    P+ N  FN+AMASD+ L  ++ +  C  VF+
Sbjct: 21  ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKL-INLALRDCDFVFD 79

Query: 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISP 189
           GL S+VDVGGG GT AK I + FPKL+C  FD P VV  L     NL YVGGDMF +I  
Sbjct: 80  GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS-NNLTYVGGDMFTSIPN 138

Query: 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
           ADAVLLK+ILH+W D++C++ILKKCKEA+T+DGK+GKV IIDM+ + KK +++  + +L 
Sbjct: 139 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLL 198

Query: 250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP 296
            D+ M   L G ER+E+EW KLF  AGF  YKI P+ G  SLIE+YP
Sbjct: 199 MDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 244

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  223 bits (569), Expect = 3e-73
 Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 70  QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFE 129
             +    ++D   F   HG T +E+ G + K+N  FN++M          M+      FE
Sbjct: 22  NFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE-IYTGFE 80

Query: 130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISP 189
           G+++LVDVGGG G   + I   +P ++   FDLP V+      L+ +++VGGDMF ++  
Sbjct: 81  GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN-APPLSGIEHVGGDMFASVPQ 139

Query: 190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF 249
            DA++LK + H+W+DE+C++ L  C +A+      GKVII++ I   +    +  +    
Sbjct: 140 GDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVIIVEFILPEEPNTSEESKLVST 196

Query: 250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII-PILGLRSLIEVY 295
            D LM + + G ER EK++ KL   +GFS +++         ++E Y
Sbjct: 197 LDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 243

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  175 bits (443), Expect = 2e-54
 Identities = 82/217 (37%), Positives = 118/217 (54%), Gaps = 6/217 (2%)

Query: 78  DDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDV 137
           D   PF+ A+G T +EY G +P+ N  FN+ M+  + + T   I +    FEGL SLVDV
Sbjct: 30  DGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTI-TMKKILETYTGFEGLKSLVDV 88

Query: 138 GGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKW 197
           GGG G     I   +P ++   FDLPHV+    S    +++VGGDMF +I  ADAV +KW
Sbjct: 89  GGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSY-PGVEHVGGDMFVSIPKADAVFMKW 147

Query: 198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL 257
           I HDW+DE C+K LK C EA+      GKVI+ + I         + +  +  D++M+  
Sbjct: 148 ICHDWSDEHCLKFLKNCYEAL---PDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAH 204

Query: 258 LT-GTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIE 293
              G ER +KE+  L   AGF  +K+        ++E
Sbjct: 205 NPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIME 241

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score =  134 bits (337), Expect = 2e-38
 Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 19/228 (8%)

Query: 81  TPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGG 140
             +   +G+  WE    +  L + F+  M+ D  LA           +  +  ++DVGGG
Sbjct: 34  PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGG 91

Query: 141 IGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAI-------SPADAV 193
            G    AIA   P L  T  +L           A+                     AD V
Sbjct: 92  NGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVV 151

Query: 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML 253
           LL ++L +W+DE+ + IL+ C  A+      G+++++D       GD          D+ 
Sbjct: 152 LLSFVLLNWSDEDALTILRGCVRALE---PGGRLLVLDRADVE--GDGADRFFSTLLDLR 206

Query: 254 MMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLR-----SLIEVYP 296
           M+  + G  R   E   L   AG +                S++E   
Sbjct: 207 MLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 254

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score =  119 bits (298), Expect = 8e-33
 Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 20/228 (8%)

Query: 81  TPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGG 140
             +++ +GK  +E     P L   F+  +A D  +A           +  +  ++DVGGG
Sbjct: 33  PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGG 90

Query: 141 IGTAAKAIAKAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPAD-------AV 193
            G  A AIA+  P +  T  ++   V+   S L +               +       A+
Sbjct: 91  KGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAI 150

Query: 194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML 253
           +L ++L +W D + V+IL +C EA+      G+++I +    +   ++   E     D+ 
Sbjct: 151 ILSFVLLNWPDHDAVRILTRCAEALE---PGGRILIHERDDLH---ENSFNEQFTELDLR 204

Query: 254 MMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILG-----LRSLIEVYP 296
           M+V L G  R  ++W  L   AG    ++  +         SL+ + P
Sbjct: 205 MLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 86.9 bits (215), Expect = 3e-22
 Identities = 28/63 (44%), Positives = 44/63 (69%)

Query: 10 TELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRC 69
          +E+ +AQ  ++ HI+ FI+SM+LK A+++ IP+II  HGKP++L+ LVS L +  SK   
Sbjct: 4  SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 63

Query: 70 QLR 72
            R
Sbjct: 64 VRR 66

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 67.5 bits (165), Expect = 6e-15
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKP---MTLNELVSAL---TINPSKS 67
           A         N +    L  AI L + +II+K   P   M+ +E+ S L   T +    
Sbjct: 5  SACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLP 64

Query: 68 RCQLR 72
              R
Sbjct: 65 NRLDR 69

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 19 VWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR 72
          +  ++ N +  M L+ A  L + D +       TL  L      +P      +R
Sbjct: 11 LLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDTHPQALSRLVR 62

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 56.4 bits (136), Expect = 6e-11
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGK--PMTLNELVSAL-TINPSKSRC 69
          EA           +  M LK A++L + +II+K G    ++  E+ S L T NP     
Sbjct: 6  EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVM 64

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 2/51 (3%)

Query: 22 HIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLR 72
           + +    M ++ A  L + D I       T+  L +     P      +R
Sbjct: 8  RLGSLHTPMVVRTAATLRLVDHI--LAGARTVKALAARTDTRPEALLRLIR 56

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 23/163 (14%), Positives = 51/163 (31%), Gaps = 30/163 (18%)

Query: 134 LVDVGGGIGTAAKAIAKAFPKL-------ECTCFDLPHVVNGLDSDLANLKYVGGDMFEA 186
           ++D+G G G  A A +    +        E               ++   +     +   
Sbjct: 20  VLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP 79

Query: 187 ISPADAVLLKWILHDWND-----EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD 241
               D +  ++  H ++D      E  ++LK          + G+ +++D         D
Sbjct: 80  DDSFDIITCRYAAHHFSDVRKAVREVARVLK----------QDGRFLLVDHYAPEDPVLD 129

Query: 242 KSIETQLFFDMLMMVLLTGTERD--EKEWTKLFTYAGFSDYKI 282
           +      F + L  +      R+    EW  +F+    +   I
Sbjct: 130 E------FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	100.0
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.87
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.85
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.85
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.83
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.82
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.82
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.81
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.76
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.75
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.73
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.73
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.71
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.71
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.7
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.68
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.67
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.65
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.64
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.64
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.6
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.55
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.54
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.52
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.51
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.51
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.5
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.49
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.46
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.44
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.43
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.43
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.42
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.4
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.39
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.37
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.37
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.34
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.34
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.33
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.26
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.21
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.2
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.18
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.12
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.12
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.07
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.06
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.01
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.0
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.99
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.99
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.93
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.91
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.82
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.81
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.69
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	98.67
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.65
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.65
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.64
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.61
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.61
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.58
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.46
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.41
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.4
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.38
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.38
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.38
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.37
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.34
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.32
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.32
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.32
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.28
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.23
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.23
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.22
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.13
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.06
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.04
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.04
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.0
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.93
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.87
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.82
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.78
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.73
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.64
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.49
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.42
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.39
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.34
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	97.32
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.86
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	96.61
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.18
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.1
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.07
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.78
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.28
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	95.15
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.15
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.08
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.67
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.58
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.84
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.74
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.63
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.63
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.4
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.29
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	93.28
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	93.05
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.39
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	92.37
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.2
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.87
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.82
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.34
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	91.12
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.02
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	90.06
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	89.6
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	89.53
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.44
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	89.42
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	89.4
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.35
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.11
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	88.71
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	88.64
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	87.97
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	87.46
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	87.14
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	86.92
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	86.75
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	86.31
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	85.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	85.37
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.24
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.21
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	84.86
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	84.54
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.08
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	83.64
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.55
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	83.43
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	83.26
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	81.86
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	81.15
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	80.75

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=4.2e-45  Score=308.08  Aligned_cols=222  Identities=32%  Similarity=0.627  Sum_probs=188.5

Q ss_pred             hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHH
Q 022515           70 QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIA  149 (296)
Q Consensus        70 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~  149 (296)
                      +|.+.++++++++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.++ .+++..+|||||||+|.++++++
T Consensus        22 ~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~~~~~vlDiGGG~G~~~~~l~  100 (244)
T d1fp1d2          22 NFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELII  100 (244)
T ss_dssp             THHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccCCcEEEEecCCCcHHHHHHH
Confidence            56677888877899999999999999999999999999999998888889999988 36888999999999999999999


Q ss_pred             HHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          150 KAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       150 ~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      +++|+++++++|+|++++.+. ..+||+++.||+++++|++|+|++++|||+|+|++++++|++++++|+|   ||+|+|
T Consensus       101 ~~~P~l~~~v~Dlp~vi~~~~-~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~p---gg~llI  176 (244)
T d1fp1d2         101 SKYPLIKGINFDLPQVIENAP-PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVII  176 (244)
T ss_dssp             HHCTTCEEEEEECHHHHTTCC-CCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             HHCCCCeEEEecchhhhhccC-CCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHHHHHHHcCC---CcEEEE
Confidence            999999999999999998887 7899999999999999999999999999999999999999999999999   999999


Q ss_pred             EeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc-CCcceEEEEeC
Q 022515          230 IDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI-LGLRSLIEVYP  296 (296)
Q Consensus       230 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~  296 (296)
                      +|.+.++....++.......+++.|++.++|++||.+||+++|++|||+.+++.+. .+..+|||++|
T Consensus       177 ~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         177 VEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             EEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             EEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEEEeC
Confidence            99999887665433334467788898888999999999999999999999999765 47789999997

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=4.6e-45  Score=308.00  Aligned_cols=221  Identities=51%  Similarity=0.947  Sum_probs=197.4

Q ss_pred             hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHH
Q 022515           70 QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIA  149 (296)
Q Consensus        70 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~  149 (296)
                      .|.+|++++.+++|+.++|+++|+|+.++|+..+.|.++|...+......+.+ +.+.+++..+|||||||+|.++++++
T Consensus        21 ~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~-~~~~~~~~~~vvDvGGG~G~~~~~l~   99 (244)
T d1fp2a2          21 ELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRD-CDFVFDGLESIVDVGGGTGTTAKIIC   99 (244)
T ss_dssp             GHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHT-CHHHHTTCSEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhh-hcccccCceEEEEecCCccHHHHHHH
Confidence            68899998887999999999999999999999999999999887766555543 33347788999999999999999999


Q ss_pred             HHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCC---cE
Q 022515          150 KAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKK---GK  226 (296)
Q Consensus       150 ~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g---G~  226 (296)
                      ++||+++++++|+|++++.+. ..+||+++.|||++++|++|+|+++++||+|+|++++++|++++++|+|   |   |+
T Consensus       100 ~~~P~l~~~v~Dlp~vi~~~~-~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~p---gg~~~~  175 (244)
T d1fp2a2         100 ETFPKLKCIVFDRPQVVENLS-GSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTN---DGKRGK  175 (244)
T ss_dssp             HHCTTCEEEEEECHHHHTTCC-CBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSG---GGCCCE
T ss_pred             HhCCCCeEEEecCHHHHHhCc-ccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHHHHHHHcCc---ccCCcE
Confidence            999999999999999999988 8899999999999988899999999999999999999999999999999   7   89


Q ss_pred             EEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          227 VIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       227 lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      ++|+|.+.++....++.......++++|+. .+|++||.+||+++|++|||+++++++.++..+|||++|
T Consensus       176 lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~svIE~~p  244 (244)
T d1fp2a2         176 VTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP  244 (244)
T ss_dssp             EEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             EEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEECCCCeEEEEEeC
Confidence            999999998876553322334567777764 689999999999999999999999999999999999998

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.8e-42  Score=292.59  Aligned_cols=220  Identities=36%  Similarity=0.663  Sum_probs=199.9

Q ss_pred             hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHH
Q 022515           70 QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIA  149 (296)
Q Consensus        70 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~  149 (296)
                      +|.+.+++|+ ++|+.++|.++|+|+.++|+..+.|.++|...+......+++.+++ +++..+|||||||+|.++++++
T Consensus        23 ~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~~~~~~vvDvGGG~G~~~~~l~  100 (243)
T d1kyza2          23 HLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEGLKSLVDVGGGTGAVINTIV  100 (243)
T ss_dssp             GHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSSCSEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-ccCCcEEEEecCCCcHHHHHHH
Confidence            6888899998 8999999999999999999999999999999888888889998883 4667899999999999999999


Q ss_pred             HHCCCCeEEeccchhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          150 KAFPKLECTCFDLPHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       150 ~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ++||+++++++|+|++++.++ ..+|++++.+|+++++|.+|+|++++++|+|++++++++|++++++|+|   ||+++|
T Consensus       101 ~~~P~l~~~v~Dlp~vi~~~~-~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~p---gg~~li  176 (243)
T d1kyza2         101 SKYPTIKGINFDLPHVIEDAP-SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPD---NGKVIV  176 (243)
T ss_dssp             HHCTTSEEEEEECTTTTTTCC-CCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCS---SSCEEE
T ss_pred             HHCCCCeEEEcccHHhhhhcc-cCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHHHHHHhcCC---CceEEE
Confidence            999999999999999998888 7899999999999999999999999999999999999999999999999   999999


Q ss_pred             EeeeeCCCCCCCchhhhhhhhhhhhhhhc-CccccCHHHHHHHHHhcCCceeEEEEcCCcceEEEEe
Q 022515          230 IDMIRENKKGDDKSIETQLFFDMLMMVLL-TGTERDEKEWTKLFTYAGFSDYKIIPILGLRSLIEVY  295 (296)
Q Consensus       230 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  295 (296)
                      +|.+.++....+........+++.|++.+ +|++||.+||++++++|||+.+++++.+...+|||.+
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~~  243 (243)
T d1kyza2         177 AECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFL  243 (243)
T ss_dssp             EECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEEC
T ss_pred             EEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEeC
Confidence            99998876654333333457889988775 8999999999999999999999999998888999963

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=1.4e-40  Score=283.32  Aligned_cols=219  Identities=24%  Similarity=0.385  Sum_probs=193.4

Q ss_pred             hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHH
Q 022515           70 QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIA  149 (296)
Q Consensus        70 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~  149 (296)
                      +|.+.+++|. ++|...+|.++|+++.++|+..+.|.++|...+......+++.++  +++..+|||||||+|.++..++
T Consensus        24 ~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~vlDvG~G~G~~~~~l~  100 (256)
T d1qzza2          24 GLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIA  100 (256)
T ss_dssp             GHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC--CccCCEEEEECCCCCHHHHHHH
Confidence            6788889997 789999999999999999999999999999998888999999999  8899999999999999999999


Q ss_pred             HHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCC
Q 022515          150 KAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAIS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDG  222 (296)
Q Consensus       150 ~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~  222 (296)
                      ++||+++++++|+|++++.+++      ..+|++++.+|+++++| +||+|+++++||+|+++++.++|++++++|+|  
T Consensus       101 ~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkp--  178 (256)
T d1qzza2         101 LRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEP--  178 (256)
T ss_dssp             HHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE--
T ss_pred             HhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccCcHHHHHHHHHHHhhcCC--
Confidence            9999999999999999887765      57999999999999776 59999999999999999999999999999999  


Q ss_pred             CCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCC-----cceEEEEeC
Q 022515          223 KKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILG-----LRSLIEVYP  296 (296)
Q Consensus       223 ~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-----~~~vi~~~~  296 (296)
                       ||+++|+|.+.++.....  ......+++.|+...+|++||.+||++++++|||+++++++.+.     ..+|||+.+
T Consensus       179 -gG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~~~~v~E~~~  254 (256)
T d1qzza2         179 -GGRLLVLDRADVEGDGAD--RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA  254 (256)
T ss_dssp             -EEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             -cceeEEEEeccCCCCccc--HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEEEeCCcCccCceEEEEEEe
Confidence             999999998766544332  13456789999988899999999999999999999999988753     358999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=100.00  E-value=4.2e-39  Score=274.00  Aligned_cols=218  Identities=27%  Similarity=0.469  Sum_probs=193.3

Q ss_pred             hHHHhhhcCCCChhhhhcCCCchhhcccCchHHHHHHHHHHccchhchHHHHHhcccccCCCCEEEEecCCchHHHHHHH
Q 022515           70 QLRTWFQNDDPTPFDTAHGKTLWEYAGDEPKLNNFFNEAMASDAWLATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIA  149 (296)
Q Consensus        70 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~  149 (296)
                      +|.+.+++|+ ++|..++|+++|+++.++|+....|...|...+....+.+++.++  +++..+|||||||+|.++..++
T Consensus        23 ~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~~~~~la   99 (253)
T d1tw3a2          23 RLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIA   99 (253)
T ss_dssp             GHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHH
T ss_pred             HHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCHHHHHHH
Confidence            6788899997 789999999999999999999999999999998888899999999  8899999999999999999999


Q ss_pred             HHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCCCCC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCC
Q 022515          150 KAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFEAIS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDG  222 (296)
Q Consensus       150 ~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~  222 (296)
                      +++|+++++++|+|++++.+++      ..+|++++.+|++++.| +||+|+++++||+|+++++.++|++++++|||  
T Consensus       100 ~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkP--  177 (253)
T d1tw3a2         100 RRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEP--  177 (253)
T ss_dssp             HHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEE--
T ss_pred             HhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcCC--
Confidence            9999999999999888887765      57899999999998655 69999999999999999999999999999999  


Q ss_pred             CCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEcCCc-----ceEEEEeC
Q 022515          223 KKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPILGL-----RSLIEVYP  296 (296)
Q Consensus       223 ~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~  296 (296)
                       ||+++|.|....+.....   .....+++.|+..++|++||.+||++++++|||++++++.+++.     ..+|+..|
T Consensus       178 -GG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~P  252 (253)
T d1tw3a2         178 -GGRILIHERDDLHENSFN---EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  252 (253)
T ss_dssp             -EEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             -CcEEEEEeccCCCCCcch---hHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEec
Confidence             999999998766544332   34457788888888999999999999999999999998876432     45776654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=1.2e-21  Score=162.54  Aligned_cols=165  Identities=14%  Similarity=0.127  Sum_probs=121.7

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHH--CCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CCCccceeEehh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKA--FPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AISPADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~p~~D~v~~~~  197 (296)
                      .++..+|||||||+|..+..+++.  .|+.+++++|+ +.|++.|++      ...++++..+|+.+ +.+.+|++++..
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            356789999999999999999986  48999999999 999999875      46778888899887 666799999999


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhc--------------Ccccc
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLL--------------TGTER  263 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~g~~r  263 (296)
                      ++|+++.++..++|++++++|+|   ||.+++.|...+........ ....+..+......              .-...
T Consensus       117 ~l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (225)
T d1im8a_         117 TLQFLPPEDRIALLTKIYEGLNP---NGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTD  192 (225)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHEEE---EEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred             eccccChhhHHHHHHHHHHhCCC---CceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence            99999988888999999999999   99999998776554221000 00011111000000              01235


Q ss_pred             CHHHHHHHHHhcCCceeEEEEcCCcceEEEEeC
Q 022515          264 DEKEWTKLFTYAGFSDYKIIPILGLRSLIEVYP  296 (296)
Q Consensus       264 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  296 (296)
                      +.+++.++|+++||+.+++.-.......+.|+|
T Consensus       193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            889999999999999988764332333455554

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.85  E-value=3.7e-21  Score=164.96  Aligned_cols=156  Identities=16%  Similarity=0.252  Sum_probs=122.6

Q ss_pred             hchHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C
Q 022515          115 LATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A  186 (296)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~  186 (296)
                      .+...+....+  ++++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++      ..++++|+.+|+.+ +
T Consensus        54 ~~~~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~  130 (282)
T d2o57a1          54 WLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  130 (282)
T ss_dssp             HHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence            34455555555  7888999999999999999999876 679999999 999988876      56899999999998 6


Q ss_pred             CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccC
Q 022515          187 IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERD  264 (296)
Q Consensus       187 ~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt  264 (296)
                      ++  .||+|++..++||+++..  ++|++++++|+|   ||++++.+....+.....   ....+.+...    .....+
T Consensus       131 ~~~~sfD~V~~~~~l~h~~d~~--~~l~~~~~~Lkp---gG~l~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~s  198 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHSPDKL--KVFQECARVLKP---RGVMAITDPMKEDGIDKS---SIQPILDRIK----LHDMGS  198 (282)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEECTTCCGG---GGHHHHHHHT----CSSCCC
T ss_pred             ccccccchhhccchhhhccCHH--HHHHHHHHhcCC---CcEEEEEEeecCCCCchh---HHHHHHHHhc----cCCCCC
Confidence            65  499999999999999765  789999999999   999999998876543321   1111222111    122348


Q ss_pred             HHHHHHHHHhcCCceeEEEEc
Q 022515          265 EKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       265 ~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      .+++.++++++||+++.+...
T Consensus       199 ~~~~~~~l~~~Gf~~i~~~d~  219 (282)
T d2o57a1         199 LGLYRSLAKECGLVTLRTFSR  219 (282)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCceEEEEEC
Confidence            899999999999998887754

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.85  E-value=4.1e-21  Score=159.62  Aligned_cols=151  Identities=17%  Similarity=0.321  Sum_probs=116.9

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--c
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--P  189 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~  189 (296)
                      .+++..+  +++..+|||||||+|.++..+++..  .+++++|+ +.+++.|++     ..++++|+.+|+.+ +++  .
T Consensus         6 ~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           6 KLMQIAA--LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHhcC--CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence            4555555  7888999999999999999999885  48999999 999998865     46889999999998 665  4


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhh--hhcCccccCHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM--VLLTGTERDEKE  267 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~rt~~e  267 (296)
                      ||+|++.+++||++|.+  ++|++++++|+|   ||++++.+...+....      ....++....  .......++.++
T Consensus        82 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  150 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLVDNSAPENDA------FDVFYNYVEKERDYSHHRAWKKSD  150 (231)
T ss_dssp             EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred             cccccccccccccCCHH--HHHHHHHHhcCC---CcEEEEEeCCCCCCHH------HHHHHHHHHhhcccCcccCCCHHH
Confidence            99999999999999876  789999999999   9999999876654311      1112211111  112335568899


Q ss_pred             HHHHHHhcCCceeEEEE
Q 022515          268 WTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~  284 (296)
                      |.++|+++||+++++..
T Consensus       151 ~~~~l~~aGf~~~~~~~  167 (231)
T d1vl5a_         151 WLKMLEEAGFELEELHC  167 (231)
T ss_dssp             HHHHHHHHTCEEEEEEE
T ss_pred             HHHHHHHCCCEEEEEEE
Confidence            99999999999887654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.83  E-value=1.2e-20  Score=159.20  Aligned_cols=151  Identities=18%  Similarity=0.280  Sum_probs=120.3

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCC--cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AIS--PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p--~~  190 (296)
                      ..+++.++  ..+..+|||||||+|.++..|+..+.+ +++++|+ +.+++.|++   ...+++|.++|+.+ +.+  .|
T Consensus        83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence            35556666  567789999999999999999887644 8999999 999999986   34668999999987 443  49


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHH
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTK  270 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~  270 (296)
                      |+|++.+++||+++++..++|++++++|+|   ||.++|.|.+.......         ++.    ..+...|+.++|++
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~e~~~~~~~~~---------~d~----~d~~~~rs~~~~~~  223 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFKENCSTGDRFL---------VDK----EDSSLTRSDIHYKR  223 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEBC--CCEE---------EET----TTTEEEBCHHHHHH
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEEecCCCCCcce---------ecc----cCCceeCCHHHHHH
Confidence            999999999999999989999999999999   99999988765543211         110    12344679999999


Q ss_pred             HHHhcCCceeEEEEcCC
Q 022515          271 LFTYAGFSDYKIIPILG  287 (296)
Q Consensus       271 ll~~aGf~~~~~~~~~~  287 (296)
                      +++++||++++.....+
T Consensus       224 l~~~aGf~ii~~~~q~~  240 (254)
T d1xtpa_         224 LFNESGVRVVKEAFQEE  240 (254)
T ss_dssp             HHHHHTCCEEEEEECTT
T ss_pred             HHHHcCCEEEEEEeeCC
Confidence            99999999988776543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=9e-20  Score=152.99  Aligned_cols=153  Identities=10%  Similarity=0.062  Sum_probs=119.4

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC--
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS--  188 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p--  188 (296)
                      ..+.+.+.  +.++.+|||||||+|.++..++++++ .+++++|+ +.+++.|++      ..+|++|+.+|+.+..+  
T Consensus        23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~   99 (245)
T d1nkva_          23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE   99 (245)
T ss_dssp             HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence            44556666  78889999999999999999998875 79999999 999988765      56899999999988433  


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHH
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEW  268 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~  268 (296)
                      .||+|++..++||+++.+  ++|++++++|||   ||++++.+..........   .......    ........+..++
T Consensus       100 ~fD~v~~~~~~~~~~d~~--~~l~~~~r~LkP---GG~l~i~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~  167 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFA--GAEELLAQSLKP---GGIMLIGEPYWRQLPATE---EIAQACG----VSSTSDFLTLPGL  167 (245)
T ss_dssp             CEEEEEEESCGGGTSSSH--HHHHHHTTSEEE---EEEEEEEEEEETTCCSSH---HHHHTTT----CSCGGGSCCHHHH
T ss_pred             ceeEEEEEehhhccCCHH--HHHHHHHHHcCc---CcEEEEEeccccCCCChH---HHHHHhc----cCCCcccCCHHHH
Confidence            599999999999999865  789999999999   999999988766543221   1111110    0112335588999


Q ss_pred             HHHHHhcCCceeEEEEc
Q 022515          269 TKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       269 ~~ll~~aGf~~~~~~~~  285 (296)
                      ...++++||+++.....
T Consensus       168 ~~~~~~aG~~~v~~~~~  184 (245)
T d1nkva_         168 VGAFDDLGYDVVEMVLA  184 (245)
T ss_dssp             HHHHHTTTBCCCEEEEC
T ss_pred             HHHHHHcCCEEEEEEeC
Confidence            99999999998876543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-20  Score=154.54  Aligned_cols=142  Identities=18%  Similarity=0.272  Sum_probs=115.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~v  198 (296)
                      ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.|++     ...+++|+++|+.+ +.+  .||+|++..+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            34668999999999999999887765 48999999 999998876     24578999999988 543  4999999999


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                      +||+++++..++|++++++|+|   ||.+++.+....+....          +    .......|+.++|.++++++||+
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~~~~~~~~~~~----------~----~~~~~~~~~~~~~~~l~~~aGf~  199 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIKDNMAQEGVIL----------D----DVDSSVCRDLDVVRRIICSAGLS  199 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEE---EEEEEEEEEEBSSSEEE----------E----TTTTEEEEBHHHHHHHHHHTTCC
T ss_pred             cccchhhhhhhHHHHHHHhcCC---cceEEEEEccccccccc----------c----cCCceeeCCHHHHHHHHHHcCCE
Confidence            9999999888999999999999   99999998776542110          0    01123456899999999999999


Q ss_pred             eeEEEEcCC
Q 022515          279 DYKIIPILG  287 (296)
Q Consensus       279 ~~~~~~~~~  287 (296)
                      +++.....+
T Consensus       200 ii~~~~q~~  208 (222)
T d2ex4a1         200 LLAEERQEN  208 (222)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEEeCC
Confidence            998877543

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=5.8e-20  Score=153.07  Aligned_cols=151  Identities=19%  Similarity=0.346  Sum_probs=118.2

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--c
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--P  189 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~  189 (296)
                      .+++..+  ++++.+|||||||+|.++..++++.  .+++++|+ +.+++.|++     ..+++.++++|..+ +++  .
T Consensus         7 ~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~   82 (234)
T d1xxla_           7 LMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS   82 (234)
T ss_dssp             HHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred             HHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence            4556666  8899999999999999999999885  48999999 899998876     45789999999988 665  4


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhh-h-hhcCccccCHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLM-M-VLLTGTERDEKE  267 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~rt~~e  267 (296)
                      ||+|++..++|++++.+  .+|++++++|+|   ||++++.+...++..      ....+++... . .....+..+..+
T Consensus        83 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  151 (234)
T d1xxla_          83 FDIITCRYAAHHFSDVR--KAVREVARVLKQ---DGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSLSE  151 (234)
T ss_dssp             EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred             cceeeeeceeecccCHH--HHHHHHHHeeCC---CcEEEEEEcCCCCCH------HHHHHHHHHHhhCCCcccccCCHHH
Confidence            99999999999998865  889999999999   999999887654321      1112222111 1 112455668999


Q ss_pred             HHHHHHhcCCceeEEEE
Q 022515          268 WTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       268 ~~~ll~~aGf~~~~~~~  284 (296)
                      |..+++++||.+..+..
T Consensus       152 ~~~~~~~~gf~~~~~~~  168 (234)
T d1xxla_         152 WQAMFSANQLAYQDIQK  168 (234)
T ss_dssp             HHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHCCCceeEEEE
Confidence            99999999998766544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=2.1e-18  Score=140.75  Aligned_cols=137  Identities=16%  Similarity=0.124  Sum_probs=102.0

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      .+..+|||||||+|.++..+.      +.+++|+ +.+++.+++  .++++..+|+.+ +.+  .||+|++.++|||+++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~--~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d  106 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK--RGVFVLKGTAENLPLKDESFDFALMVTTICFVDD  106 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH--TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC
T ss_pred             CCCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc--cccccccccccccccccccccccccccccccccc
Confidence            345689999999999887763      4689999 999999873  468999999988 655  4999999999999987


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMVLLTGTERDEKEWTKLFTYAGFSDYKII  283 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  283 (296)
                      ..  ++|++++++|+|   ||++++.+......     .... ...... .....+...+|.+++.++|+++||+++++.
T Consensus       107 ~~--~~l~~~~~~L~p---gG~l~i~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~  175 (208)
T d1vlma_         107 PE--RALKEAYRILKK---GGYLIVGIVDRESF-----LGRE-YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV  175 (208)
T ss_dssp             HH--HHHHHHHHHEEE---EEEEEEEEECSSSH-----HHHH-HHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             cc--cchhhhhhcCCC---CceEEEEecCCcch-----hHHh-hhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence            64  789999999999   99998887533210     0000 000000 001123445699999999999999988876


Q ss_pred             E
Q 022515          284 P  284 (296)
Q Consensus       284 ~  284 (296)
                      .
T Consensus       176 ~  176 (208)
T d1vlma_         176 Q  176 (208)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.75  E-value=5.4e-18  Score=144.88  Aligned_cols=153  Identities=14%  Similarity=0.157  Sum_probs=109.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~~vl  199 (296)
                      ..++.+|||||||+|.++..+++.+| +.+++++|+ +.+++.|++    ...+++|+.+|+.+ +++ .||+|++.+++
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l  104 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL  104 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence            56788999999999999999999887 478999999 999998876    34579999999988 555 49999999999


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC-------CCC-Cchhhhhhhhhhhhhh-hcCcc-ccCHHHHH
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK-------KGD-DKSIETQLFFDMLMMV-LLTGT-ERDEKEWT  269 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~-------~~~-~~~~~~~~~~~~~~~~-~~~g~-~rt~~e~~  269 (296)
                      ||+++..  .+|++++++|||   ||++++.|......       ... ........+..+.... ...+. ..-..++.
T Consensus       105 ~~~~d~~--~~l~~~~~~Lkp---gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  179 (281)
T d2gh1a1         105 LHMTTPE--TMLQKMIHSVKK---GGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIP  179 (281)
T ss_dssp             GGCSSHH--HHHHHHHHTEEE---EEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHH
T ss_pred             hcCCCHH--HHHHHHHHHcCc---CcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            9999876  789999999999   99999998542110       000 0000001111111111 11222 22234677


Q ss_pred             HHHHhcCCceeEEEEc
Q 022515          270 KLFTYAGFSDYKIIPI  285 (296)
Q Consensus       270 ~ll~~aGf~~~~~~~~  285 (296)
                      .+++++||+.+++...
T Consensus       180 ~~l~eaGf~~i~~~~~  195 (281)
T d2gh1a1         180 IYLSELGVKNIECRVS  195 (281)
T ss_dssp             HHHHHTTCEEEEEEEC
T ss_pred             HHHHHcCCeEEEEEEe
Confidence            8999999999887654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=4.2e-17  Score=138.86  Aligned_cols=164  Identities=12%  Similarity=0.174  Sum_probs=126.0

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISP  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~  189 (296)
                      .+.+++.+.  ++++.+|||||||.|.+++.+++++ +++++++++ ++.++.|++      ..+++++..+|+.+....
T Consensus        51 ~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~  127 (285)
T d1kpga_          51 IDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP  127 (285)
T ss_dssp             HHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCC
T ss_pred             HHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Confidence            356677777  8899999999999999999999998 589999999 888877654      678999999998763346


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCC-----CCchhhhhhhhh-hhhhhhcCcccc
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKG-----DDKSIETQLFFD-MLMMVLLTGTER  263 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~g~~r  263 (296)
                      ||.|++..++.|+....-..++++++++|+|   ||++++.+.....+..     .+.........+ +......+|...
T Consensus       128 fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lP  204 (285)
T d1kpga_         128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLP  204 (285)
T ss_dssp             CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCC
T ss_pred             ccceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCC
Confidence            9999999999999877666899999999999   9999998876543210     000001111112 122223577788


Q ss_pred             CHHHHHHHHHhcCCceeEEEEcC
Q 022515          264 DEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       264 t~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      +.+++..+++++||++..+..++
T Consensus       205 sl~~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         205 SIPMVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             CHHHHHHHHHTTTCEEEEEEECH
T ss_pred             ChhhHHHHHHHhchhhcccccch
Confidence            99999999999999999887653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=1.9e-17  Score=141.03  Aligned_cols=163  Identities=14%  Similarity=0.208  Sum_probs=124.3

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISP  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~  189 (296)
                      ...+++.+.  ++++.+|||||||.|.++..+++++ +.+++++|+ +++++.|++      ...++.+...|+.+....
T Consensus        41 ~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~  117 (280)
T d2fk8a1          41 VDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP  117 (280)
T ss_dssp             HHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred             HHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccc
Confidence            356777777  8899999999999999999988887 469999999 888887765      567888888887764446


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCC----chh-hhhhhhhhh-hhhhcCcccc
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDD----KSI-ETQLFFDML-MMVLLTGTER  263 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~----~~~-~~~~~~~~~-~~~~~~g~~r  263 (296)
                      ||.|++..+++|++++.-..+|++++++|||   ||+++|.+.+..+.....    ... ......++. .....+|...
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lP  194 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLP  194 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCC
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCccc
Confidence            9999999999999988777999999999999   999999886654321100    000 001111221 1223577788


Q ss_pred             CHHHHHHHHHhcCCceeEEEEc
Q 022515          264 DEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       264 t~~e~~~ll~~aGf~~~~~~~~  285 (296)
                      +.+++.+.++++||++..+...
T Consensus       195 S~~~l~~~~e~aGf~v~~~~~~  216 (280)
T d2fk8a1         195 STEMMVEHGEKAGFTVPEPLSL  216 (280)
T ss_dssp             CHHHHHHHHHHTTCBCCCCEEC
T ss_pred             chHhhhhhHHhhccccceeeec
Confidence            9999999999999999887664

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.71  E-value=3.2e-17  Score=135.43  Aligned_cols=139  Identities=12%  Similarity=0.161  Sum_probs=104.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC-ccceeEehhhhccCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS-PADAVLLKWILHDWND  204 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p-~~D~v~~~~vlh~~~d  204 (296)
                      .++.+|||||||+|.++..++++.  .+++++|+ +.+++.|++ ..++++++.+|+.+ +.+ .||+|++.++|||+++
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d   96 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD   96 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence            456689999999999999998874  57999999 899999987 66789999999887 444 4999999999999988


Q ss_pred             hHHHHHHHHHH-HhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhh-------------hhcCccccCHHHHHH
Q 022515          205 EECVKILKKCK-EAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMM-------------VLLTGTERDEKEWTK  270 (296)
Q Consensus       205 ~~~~~iL~~~~-~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~rt~~e~~~  270 (296)
                      +.  .+|++++ ++|+|   ||.+++.-+.....         .......+.             .....+.++.+++++
T Consensus        97 ~~--~~l~~i~~~~Lk~---gG~l~i~~pn~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~  162 (225)
T d2p7ia1          97 PV--ALLKRINDDWLAE---GGRLFLVCPNANAV---------SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLER  162 (225)
T ss_dssp             HH--HHHHHHHHTTEEE---EEEEEEEEECTTCH---------HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHH
T ss_pred             HH--HHHHHHHHHhcCC---CceEEEEeCCcccH---------HHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHH
Confidence            75  7799998 78999   88888865321110         000000000             011234568999999


Q ss_pred             HHHhcCCceeEEE
Q 022515          271 LFTYAGFSDYKII  283 (296)
Q Consensus       271 ll~~aGf~~~~~~  283 (296)
                      +++++||++++..
T Consensus       163 ~l~~~Gf~i~~~~  175 (225)
T d2p7ia1         163 DASRAGLQVTYRS  175 (225)
T ss_dssp             HHHHTTCEEEEEE
T ss_pred             HHHHCCCEEEEEE
Confidence            9999999987754

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=1.3e-16  Score=136.26  Aligned_cols=163  Identities=13%  Similarity=0.143  Sum_probs=124.9

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCCc
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAISP  189 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p~  189 (296)
                      .+.+++.+.  ++++.+|||||||.|.++..++++++ ++++++++ ++.++.+++      ..+++++...|+......
T Consensus        50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  126 (291)
T d1kpia_          50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP  126 (291)
T ss_dssp             HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred             HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence            456777777  88999999999999999999999985 69999999 888776654      678999999997654446


Q ss_pred             cceeEehhhhccCCch-------HHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCC------Cchhhhhhhhhhh-hh
Q 022515          190 ADAVLLKWILHDWNDE-------ECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD------DKSIETQLFFDML-MM  255 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~-------~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~------~~~~~~~~~~~~~-~~  255 (296)
                      ||.|++..++.|+++.       .-..++++++++|||   ||++++...+.++....      .|. ......++. ..
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~~i~~~~~~~~~~~~~~~p~-~~~~~~~fi~ky  202 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLHTITIPDKEEAQELGLTSPM-SLLRFIKFILTE  202 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEEEEECCCHHHHHHHTCCCCH-HHHHHHHHHHHH
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEEEEeccCcchhhhccCCCch-hhcccchHHHHH
Confidence            9999999999888863       346899999999999   99999988876543110      010 011111221 11


Q ss_pred             hhcCccccCHHHHHHHHHhcCCceeEEEEcC
Q 022515          256 VLLTGTERDEKEWTKLFTYAGFSDYKIIPIL  286 (296)
Q Consensus       256 ~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~  286 (296)
                      ...+|...+..++...++++||++..+...+
T Consensus       203 iFpgg~lps~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         203 IFPGGRLPRISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             TCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             hcCCCCCCCHHHHHhhhcccccccceeeecc
Confidence            2357888899999999999999998887764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=6.8e-17  Score=130.79  Aligned_cols=109  Identities=17%  Similarity=0.230  Sum_probs=90.7

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC-cc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS-PA  190 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p-~~  190 (296)
                      .++....  ...+++|||||||+|..+..|+++  +.+++++|+ +.+++.+++     ..+++++...|+.+ ..+ .|
T Consensus        21 ~~~~~~~--~~~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f   96 (198)
T d2i6ga1          21 DVLAAAK--VVAPGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY   96 (198)
T ss_dssp             HHHHHHT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCE
T ss_pred             HHHHHcc--cCCCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccc
Confidence            3444444  334569999999999999999998  568999999 889987765     45789999999988 443 59


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      |+|++..++|++++++..++|++++++|+|   ||++++.....
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~~~~~  137 (198)
T d2i6ga1          97 DFILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIVAAMD  137 (198)
T ss_dssp             EEEEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEEEEBC
T ss_pred             cEEEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEEEecC
Confidence            999999999999998888999999999999   89888876543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=1.7e-16  Score=131.10  Aligned_cols=137  Identities=16%  Similarity=0.135  Sum_probs=109.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCCC--C--ccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEAI--S--PADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~~--p--~~D~v~~~~vl  199 (296)
                      ++++.+|||||||+|..+.++++..|+.+++++|+ |.+++.+++   ...++.++.+|...+.  .  .+|++++.+.+
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~  151 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV  151 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence            67889999999999999999999999999999999 999987765   5677888888887732  2  36777777778


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCce
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSD  279 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~  279 (296)
                      |++++.  ..+++++++.|||   ||++++.+.....+...++                   ....+++.+.|+++||++
T Consensus       152 ~~~~~~--~~~l~~~~r~LKp---gG~~~i~~k~~~~d~~~~~-------------------~~~~~e~~~~L~~aGF~i  207 (230)
T d1g8sa_         152 AQPNQA--EILIKNAKWFLKK---GGYGMIAIKARSIDVTKDP-------------------KEIFKEQKEILEAGGFKI  207 (230)
T ss_dssp             CSTTHH--HHHHHHHHHHEEE---EEEEEEEEEGGGTCSSSCH-------------------HHHHHHHHHHHHHHTEEE
T ss_pred             cchHHH--HHHHHHHHHhccc---CceEEEEeeccccCCCCCH-------------------HHHHHHHHHHHHHcCCEE
Confidence            766554  4789999999999   9999998876655433221                   113467889999999999


Q ss_pred             eEEEEcCCc
Q 022515          280 YKIIPILGL  288 (296)
Q Consensus       280 ~~~~~~~~~  288 (296)
                      ++...+..+
T Consensus       208 ve~idL~py  216 (230)
T d1g8sa_         208 VDEVDIEPF  216 (230)
T ss_dssp             EEEEECTTT
T ss_pred             EEEecCCCC
Confidence            998887543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=8.4e-17  Score=132.39  Aligned_cols=100  Identities=15%  Similarity=0.257  Sum_probs=87.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC--ccceeEehhhhc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS--PADAVLLKWILH  200 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh  200 (296)
                      ++..+|||||||+|.++..+++.  +.+++++|+ +.+++.|++    ...++.++.+|+.+ +.+  .||+|++.+++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence            45679999999999999999985  678999999 999998876    45678899999988 655  499999999999


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      |+++++..++|+++.++|+|   ||++++....
T Consensus       114 ~~~~~d~~~~l~~i~~~Lkp---gG~lii~~~~  143 (226)
T d1ve3a1         114 HFEPLELNQVFKEVRRVLKP---SGKFIMYFTD  143 (226)
T ss_dssp             GCCHHHHHHHHHHHHHHEEE---EEEEEEEEEC
T ss_pred             hCChhHHHHHHHHHHHHcCc---CcEEEEEEcC
Confidence            99988888999999999999   9998887654

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=4.8e-16  Score=130.06  Aligned_cols=106  Identities=20%  Similarity=0.307  Sum_probs=88.2

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-cc
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PA  190 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~  190 (296)
                      ..++..+.  ..+..+|||||||+|.++..|+++  +.+++++|+ +.|++.|++    ...++++..+|+.+ +.+ .|
T Consensus        31 ~~~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          31 EEIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHhc--CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence            34455555  566789999999999999999987  458999999 999999886    45589999999988 665 49


Q ss_pred             ceeEeh-hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          191 DAVLLK-WILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       191 D~v~~~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      |+|++. .++|+++.++..++|+++++.|+|   ||++++.
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~  144 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD  144 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEE
Confidence            999985 688888877888999999999999   8877664

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.64  E-value=4.2e-16  Score=130.26  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=79.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-CCC-ccceeEeh-hhhc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-AIS-PADAVLLK-WILH  200 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~~p-~~D~v~~~-~vlh  200 (296)
                      .++.+|||||||+|.++..++++.  .+++++|+ +.|++.|++    ...+++++++|+.+ +.+ .||+|++. ++++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence            345799999999999999999984  58999999 999998876    45689999999988 545 59999874 6777


Q ss_pred             cCC-chHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          201 DWN-DEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       201 ~~~-d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ++. .++..++|+++++.|+|   ||.+++
T Consensus       114 ~~~~~~~~~~~l~~~~~~Lkp---gG~~i~  140 (246)
T d1y8ca_         114 YIIDSDDLKKYFKAVSNHLKE---GGVFIF  140 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence            764 55677899999999999   777664

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.64  E-value=5.7e-16  Score=124.59  Aligned_cols=104  Identities=8%  Similarity=0.029  Sum_probs=89.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----------------CCCCeeEEeccCCCCC--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----------------DLANLKYVGGDMFEAI--  187 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~D~~~~~--  187 (296)
                      +.++.+|||||||+|..+..|+++  +.+++++|+ +.+++.|++                 ....+++..+|+++..  
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            678899999999999999999998  789999999 999988875                 1455788899998832  


Q ss_pred             C--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          188 S--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       188 p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      +  .+|+|+.+.++|+.+++....++++++++|||   ||++++.......
T Consensus        96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~~~~~~~  143 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLITLEYDQ  143 (201)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEEEESSCS
T ss_pred             cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEEEccccc
Confidence            2  48999999999999998888999999999999   8988877655443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.8e-15  Score=123.08  Aligned_cols=131  Identities=10%  Similarity=-0.042  Sum_probs=103.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------------------CCCCeeEEeccCC
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------------------DLANLKYVGGDMF  184 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~ri~~~~~D~~  184 (296)
                      ..++.+|||+|||+|..+..|++.  +.++|++|+ +.+++.|++                      ...++++.++|++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            457789999999999999999987  789999999 888876532                      3568999999998


Q ss_pred             C-C-CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCC-CchhhhhhhhhhhhhhhcC
Q 022515          185 E-A-IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD-DKSIETQLFFDMLMMVLLT  259 (296)
Q Consensus       185 ~-~-~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  259 (296)
                      + + .+  .||+|+...++|+++.++...+++++.++|+|   ||++++.....+..... +|                 
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~~~~~~~~~~~gpp-----------------  180 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLCVLSYDPTKHPGPP-----------------  180 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEEEEECCTTTCCCSS-----------------
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEEEcccCCCCCCCCC-----------------
Confidence            7 2 22  49999999999999998888999999999999   89888777655432211 11                 


Q ss_pred             ccccCHHHHHHHHHhcCCceeEE
Q 022515          260 GTERDEKEWTKLFTYAGFSDYKI  282 (296)
Q Consensus       260 g~~rt~~e~~~ll~~aGf~~~~~  282 (296)
                       ...+.+|+.+++.. +|.+..+
T Consensus       181 -~~~~~~el~~lf~~-~~~i~~l  201 (229)
T d2bzga1         181 -FYVPHAEIERLFGK-ICNIRCL  201 (229)
T ss_dssp             -CCCCHHHHHHHHTT-TEEEEEE
T ss_pred             -CCCCHHHHHHHhcC-CCEEEEE
Confidence             12288999999965 6765444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.8e-14  Score=120.34  Aligned_cols=126  Identities=17%  Similarity=0.261  Sum_probs=97.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC--CccceeEehhhhc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI--SPADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~--p~~D~v~~~~vlh  200 (296)
                      ..++.+|||+|||+|.+++.+++.  +.+++++|+ |.+++.|++    ..-++++..+|..+..  ..||+|+++...|
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence            457789999999999999988775  568999999 999998876    3446778889887643  3599999864433


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCcee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDY  280 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~  280 (296)
                           ....+++.++++|||   ||++++.+....                            ..+++.+.++++||+++
T Consensus       196 -----~l~~l~~~~~~~Lkp---GG~lilSgil~~----------------------------~~~~v~~~~~~~Gf~~~  239 (254)
T d2nxca1         196 -----LHAALAPRYREALVP---GGRALLTGILKD----------------------------RAPLVREAMAGAGFRPL  239 (254)
T ss_dssp             -----HHHHHHHHHHHHEEE---EEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEE
T ss_pred             -----cHHHHHHHHHHhcCC---CcEEEEEecchh----------------------------hHHHHHHHHHHCCCEEE
Confidence                 345788999999999   899887654211                            34678889999999999


Q ss_pred             EEEEcCCcceE
Q 022515          281 KIIPILGLRSL  291 (296)
Q Consensus       281 ~~~~~~~~~~v  291 (296)
                      +........++
T Consensus       240 ~~~~~~~Wv~l  250 (254)
T d2nxca1         240 EEAAEGEWVLL  250 (254)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCEEEE
Confidence            88877665443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.1e-14  Score=122.10  Aligned_cols=140  Identities=15%  Similarity=0.137  Sum_probs=93.7

Q ss_pred             CCCEEEEecCCchHHHHHHHH----HCCCC--eEEeccc-hhHhhccCC------CCCCeeE--EeccCC-------CCC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAK----AFPKL--ECTCFDL-PHVVNGLDS------DLANLKY--VGGDMF-------EAI  187 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~------~~~ri~~--~~~D~~-------~~~  187 (296)
                      +..+|||||||+|.++..+++    .+|+.  +++++|+ +.+++.+++      ....+.+  ...++.       .+.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            445899999999998877655    45554  6799999 889988765      1233333  333332       112


Q ss_pred             --CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhh-hhh-hcCcccc
Q 022515          188 --SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDML-MMV-LLTGTER  263 (296)
Q Consensus       188 --p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~g~~r  263 (296)
                        ..||+|++.+++|+++|..  .+|+++++.|+|   ||.++|......   .  .+..  .+..+. .+. .......
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~--~~l~~l~~~Lkp---gG~l~i~~~~~~---~--~~~~--l~~~~~~~~~~~~~~~~~  187 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLIIVVSGS---S--GWDK--LWKKYGSRFPQDDLCQYI  187 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEEEECTT---S--HHHH--HHHHHGGGSCCCTTSCCC
T ss_pred             CCCceeEEEEccceecCCCHH--HHHHHHHhhCCC---CCEEEEEEecCc---c--hHHH--HHHHHHHhcCCCcccccC
Confidence              2499999999999998865  789999999999   898888754211   1  1111  111111 110 1124456


Q ss_pred             CHHHHHHHHHhcCCceeE
Q 022515          264 DEKEWTKLFTYAGFSDYK  281 (296)
Q Consensus       264 t~~e~~~ll~~aGf~~~~  281 (296)
                      +.++|.++|++.||+...
T Consensus       188 ~~~~~~~~L~~~G~~~~~  205 (280)
T d1jqea_         188 TSDDLTQMLDNLGLKYEC  205 (280)
T ss_dssp             CHHHHHHHHHHHTCCEEE
T ss_pred             CHHHHHHHHHHCCCceEE
Confidence            889999999999998554

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=7.6e-15  Score=121.98  Aligned_cols=95  Identities=16%  Similarity=0.248  Sum_probs=78.6

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-CCC--ccceeEe-hhhhcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-AIS--PADAVLL-KWILHD  201 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~~p--~~D~v~~-~~vlh~  201 (296)
                      .+++.+|||||||+|.++..+++.  +.+++++|+ +.+++.|++ ...  .++.+|+.+ +++  .||+|++ ..++||
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~--~~~~~~~~~l~~~~~~fD~ii~~~~~~~~  115 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--NVVEAKAEDLPFPSGAFEAVLALGDVLSY  115 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--CEEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccc--ccccccccccccccccccceeeecchhhh
Confidence            456789999999999999999876  679999999 999999985 222  356788887 665  4999997 579999


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++|.+  ++|+++++.|+|   ||.+++..
T Consensus       116 ~~d~~--~~l~~i~r~Lk~---gG~~ii~~  140 (246)
T d2avna1         116 VENKD--KAFSEIRRVLVP---DGLLIATV  140 (246)
T ss_dssp             CSCHH--HHHHHHHHHEEE---EEEEEEEE
T ss_pred             hhhHH--HHHHHHHhhcCc---CcEEEEEE
Confidence            98876  689999999999   88877765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.52  E-value=1.6e-14  Score=120.96  Aligned_cols=99  Identities=15%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC--C-ccceeEehh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI--S-PADAVLLKW  197 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~--p-~~D~v~~~~  197 (296)
                      +++.+|||||||+|..+..+++.. ..+++++|+ +.+++.|++      ...++.|..+|+.. +.  . .||+|++..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            567899999999999999998874 347999999 999998865      34579999999976 33  2 499999999


Q ss_pred             hhccCC--chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          198 ILHDWN--DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       198 vlh~~~--d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++|++.  .++...+|+++.+.|+|   ||++++..
T Consensus       102 ~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~~  134 (252)
T d1ri5a_         102 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMTV  134 (252)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             eeeecCCCHHHHHHHHHHHhceeCC---CCEEEEEe
Confidence            999863  45667899999999999   88877653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.51  E-value=5.7e-14  Score=114.04  Aligned_cols=136  Identities=15%  Similarity=0.074  Sum_probs=96.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC-CC--cccee-Eehhhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA-IS--PADAV-LLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~-~p--~~D~v-~~~~vl  199 (296)
                      ++++.+|||||||+|..+.++++..|+.+++++|+ |.+++.+++   ..+++.++.+|...+ .+  .+|.+ ++.+.+
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~  133 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI  133 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence            78899999999999999999999999889999999 999998865   457899999998873 22  23322 222344


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCce
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSD  279 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~  279 (296)
                      +++.+  ...+++++++.|||   ||++++.+.....+...++.    .               ..++..+.+ ++||++
T Consensus       134 ~~~~~--~~~~l~~~~~~Lkp---gG~l~i~~~~~~~d~~~~~~----~---------------~~~~~~~~l-~~gf~i  188 (209)
T d1nt2a_         134 AQKNQ--IEILKANAEFFLKE---KGEVVIMVKARSIDSTAEPE----E---------------VFKSVLKEM-EGDFKI  188 (209)
T ss_dssp             CSTTH--HHHHHHHHHHHEEE---EEEEEEEEEHHHHCTTSCHH----H---------------HHHHHHHHH-HTTSEE
T ss_pred             cChhh--HHHHHHHHHHHhcc---CCeEEEEEEccccCCCCCHH----H---------------HHHHHHHHH-HcCCEE
Confidence            44444  34789999999999   99999887544333222110    0               112222333 479999


Q ss_pred             eEEEEcCCc
Q 022515          280 YKIIPILGL  288 (296)
Q Consensus       280 ~~~~~~~~~  288 (296)
                      ++...+..+
T Consensus       189 ~E~i~L~P~  197 (209)
T d1nt2a_         189 VKHGSLMPY  197 (209)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEccCCC
Confidence            998877543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.7e-15  Score=127.04  Aligned_cols=141  Identities=14%  Similarity=0.059  Sum_probs=95.1

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCe--------------------------
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANL--------------------------  176 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri--------------------------  176 (296)
                      ..++.+|||||||+|.++..++... ..+++++|+ +.+++.|++    ....+                          
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            3456799999999998886665543 337999999 999988865    11111                          


Q ss_pred             -----eEEeccCC----C-CCC--ccceeEehhhhccCCc--hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCc
Q 022515          177 -----KYVGGDMF----E-AIS--PADAVLLKWILHDWND--EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDK  242 (296)
Q Consensus       177 -----~~~~~D~~----~-~~p--~~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~  242 (296)
                           .....+..    . +.+  .||+|++..++|+.+.  ++...+++++++.|||   ||++++.+........   
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~~~~~~~~~~---  201 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTTVTLRLPSYM---  201 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEESSCCEEE---
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEEEecccccce---
Confidence                 11111111    1 222  4999999999999763  4567899999999999   8998887764322100   


Q ss_pred             hhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEEc
Q 022515          243 SIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIPI  285 (296)
Q Consensus       243 ~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~  285 (296)
                        ....        .......+.++++++|++|||+++++...
T Consensus       202 --~~~~--------~~~~~~~~~~~~~~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         202 --VGKR--------EFSCVALEKGEVEQAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             --ETTE--------EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --eccc--------cccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence              0000        01122458999999999999998887543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.50  E-value=7.5e-14  Score=112.20  Aligned_cols=105  Identities=16%  Similarity=0.322  Sum_probs=84.3

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCCCCC--
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEAIS--  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~~p--  188 (296)
                      .+++.++  ..+..+|||||||+|.++..+++..+  +++++|+ +.+++.+++       ...++++..+|+++..+  
T Consensus        43 lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~  118 (194)
T d1dusa_          43 ILVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence            4555565  56788999999999999999998866  7888899 889888865       34579999999988544  


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .||+|++.-++|+. .+...++++++.+.|+|   ||++++..
T Consensus       119 ~fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~~  157 (194)
T d1dusa_         119 KYNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVVI  157 (194)
T ss_dssp             CEEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             CceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEEE
Confidence            49999998887654 44456899999999999   88887643

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.3e-14  Score=121.08  Aligned_cols=92  Identities=16%  Similarity=0.282  Sum_probs=80.8

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCC--ccceeEehhhhccCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AIS--PADAVLLKWILHDWND  204 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d  204 (296)
                      .++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.|++...+++|..+|..+ +++  .||+|++.+++|+   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            4668999999999999999999999999999999 99999887656789999999988 665  4999999888775   


Q ss_pred             hHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          205 EECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       205 ~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                            +++++|+|||   ||++++...
T Consensus       160 ------~~e~~rvLkp---gG~l~~~~p  178 (268)
T d1p91a_         160 ------AEELARVVKP---GGWVITATP  178 (268)
T ss_dssp             ------HHHHHHHEEE---EEEEEEEEE
T ss_pred             ------HHHHHHHhCC---CcEEEEEee
Confidence                  4678899999   999988875

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.2e-14  Score=120.97  Aligned_cols=139  Identities=17%  Similarity=0.148  Sum_probs=94.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCC---------------------------
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLAN---------------------------  175 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~r---------------------------  175 (296)
                      ..++.+|||||||+|.++...+.... .+++++|. +.+++.+++    ....                           
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            34578999999999987654444432 37999999 999988764    1111                           


Q ss_pred             ----eeEEeccCCCC-------C-C-ccceeEehhhhccCCc--hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCC
Q 022515          176 ----LKYVGGDMFEA-------I-S-PADAVLLKWILHDWND--EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGD  240 (296)
Q Consensus       176 ----i~~~~~D~~~~-------~-p-~~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~  240 (296)
                          ......|+.++       . + .||+|++.++||+.+.  ++..++|+++++.|||   ||.+++.+........ 
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~~~~~~~~~~-  206 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLIGALEESWYL-  206 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEEEEESCCEEE-
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEecccCCcccc-
Confidence                12234465541       1 1 4999999999998763  3567899999999999   8988888765322100 


Q ss_pred             CchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCceeEEE
Q 022515          241 DKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKII  283 (296)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~  283 (296)
                               ..-.   .+.....+.++++++|+++||+++++.
T Consensus       207 ---------~~~~---~~~~~~~t~e~v~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         207 ---------AGEA---RLTVVPVSEEEVREALVRSGYKVRDLR  237 (263)
T ss_dssp             ---------ETTE---EEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ---------cCCc---ccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence                     0000   011223599999999999999987654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=2e-13  Score=114.09  Aligned_cols=118  Identities=13%  Similarity=0.208  Sum_probs=95.8

Q ss_pred             HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC------
Q 022515          104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS------  171 (296)
Q Consensus       104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------  171 (296)
                      .|...|....+.+    +..++..++  ..++.+|||+|||+|.++..|++. .|+.+++.+|. +++++.|++      
T Consensus        68 ~~~~~~~r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~  145 (264)
T d1i9ga_          68 DYVMSMPRGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY  145 (264)
T ss_dssp             HHHTTSCSCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc
Confidence            4555566655543    345666666  889999999999999999999997 68999999999 999998876      


Q ss_pred             --CCCCeeEEeccCCC-CCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          172 --DLANLKYVGGDMFE-AIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       172 --~~~ri~~~~~D~~~-~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                        ..+++.++.+|+.+ +++  .||.|++     |.+++.  .++.+++++|||   ||++++..+.
T Consensus       146 ~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp---GG~lv~~~P~  202 (264)
T d1i9ga_         146 GQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVYVAT  202 (264)
T ss_dssp             TSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEEESS
T ss_pred             cCCCceEEEEecccccccccCCCcceEEE-----ecCCHH--HHHHHHHhccCC---CCEEEEEeCc
Confidence              36899999999987 555  4999986     567765  679999999999   9999887643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.43  E-value=1.6e-13  Score=109.53  Aligned_cols=101  Identities=20%  Similarity=0.256  Sum_probs=81.8

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-C--CC
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-A--IS  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~--~p  188 (296)
                      .++..+.  ..++.+|||||||+|.+++.+++..  .+++++|+ |.+++.|++      ..++++++.+|+.+ .  .+
T Consensus        24 ~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~   99 (186)
T d1l3ia_          24 LIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP   99 (186)
T ss_dssp             HHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred             HHHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccC
Confidence            3445555  6788999999999999999998764  48999999 999998876      45899999999877 2  34


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .||+|++....++     ...+++.+.+.|+|   ||++++..
T Consensus       100 ~~D~v~~~~~~~~-----~~~~~~~~~~~Lkp---gG~lvi~~  134 (186)
T d1l3ia_         100 DIDIAVVGGSGGE-----LQEILRIIKDKLKP---GGRIIVTA  134 (186)
T ss_dssp             CEEEEEESCCTTC-----HHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             CcCEEEEeCcccc-----chHHHHHHHHHhCc---CCEEEEEe
Confidence            6999999765543     24689999999999   89887754

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.43  E-value=2.2e-13  Score=113.16  Aligned_cols=116  Identities=20%  Similarity=0.241  Sum_probs=84.2

Q ss_pred             HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC------
Q 022515          104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS------  171 (296)
Q Consensus       104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------  171 (296)
                      .|...|....+.+    +..++..++  ..++.+|||+|||+|.++..+++. .|..+++++|. +++++.|++      
T Consensus        57 ~~~~~~~r~~qiiypkD~~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~  134 (250)
T d1yb2a1          57 YFGRVIRRNTQIISEIDASYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY  134 (250)
T ss_dssp             GHHHHC------------------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred             HHHhhCCCCCcccCHHHHHHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc
Confidence            3445555544433    234555556  788999999999999999999986 68889999999 889988876      


Q ss_pred             CCCCeeEEeccCCCCCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          172 DLANLKYVGGDMFEAIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       172 ~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ..+++++..+|+.+..+  .||.|++     +.+++.  .+|.++.++|||   ||++++..
T Consensus       135 ~~~nv~~~~~Di~~~~~~~~fD~V~l-----d~p~p~--~~l~~~~~~LKp---GG~lv~~~  186 (250)
T d1yb2a1         135 DIGNVRTSRSDIADFISDQMYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFYL  186 (250)
T ss_dssp             CCTTEEEECSCTTTCCCSCCEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEEE
T ss_pred             CCCceEEEEeeeecccccceeeeeee-----cCCchH--HHHHHHHHhcCC---CceEEEEe
Confidence            46889999999988544  4999986     456554  679999999999   89888754

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.5e-14  Score=117.21  Aligned_cols=97  Identities=15%  Similarity=0.095  Sum_probs=75.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC---CCC--ccceeE----
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE---AIS--PADAVL----  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~---~~p--~~D~v~----  194 (296)
                      ..+.+|||||||+|..+..+++..| .+++++|+ |.+++.|++    ...++.++.+|...   +.+  .||.|+    
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            4567999999999999999988654 48999999 999998876    45667777776543   333  366665    


Q ss_pred             -ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          195 -LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       195 -~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       ....++|+++..  .++++++++|||   ||++++.+
T Consensus       131 ~~~~~~~~~~~~~--~~~~~~~r~Lkp---GG~~~~~~  163 (229)
T d1zx0a1         131 PLSEETWHTHQFN--FIKNHAFRLLKP---GGVLTYCN  163 (229)
T ss_dssp             CCBGGGTTTHHHH--HHHHTHHHHEEE---EEEEEECC
T ss_pred             ccccccccccCHH--HHHHHHHHHcCC---CcEEEEEe
Confidence             567777776654  789999999999   88877644

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=4.4e-13  Score=112.57  Aligned_cols=141  Identities=16%  Similarity=0.175  Sum_probs=106.4

Q ss_pred             HHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC------
Q 022515          104 FFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS------  171 (296)
Q Consensus       104 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------  171 (296)
                      .|...|...++.+    +..++..++  ..++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|++      
T Consensus        75 d~~~~~~r~~qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g  152 (266)
T d1o54a_          75 DEIMNMKRRTQIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG  152 (266)
T ss_dssp             HHHHTCCC-CCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhccCCccccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc
Confidence            4555665555543    335666777  8899999999999999999999875 7899999999 999999877      


Q ss_pred             CCCCeeEEeccCCCCCC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhh
Q 022515          172 DLANLKYVGGDMFEAIS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLF  249 (296)
Q Consensus       172 ~~~ri~~~~~D~~~~~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~  249 (296)
                      ..+++.+..+|+...++  .+|.|+     ++.+++.  ++|+++.++|||   ||++++..+...              
T Consensus       153 ~~~~v~~~~~d~~~~~~~~~~D~V~-----~d~p~p~--~~l~~~~~~LKp---GG~lv~~~P~~~--------------  208 (266)
T d1o54a_         153 LIERVTIKVRDISEGFDEKDVDALF-----LDVPDPW--NYIDKCWEALKG---GGRFATVCPTTN--------------  208 (266)
T ss_dssp             CGGGEEEECCCGGGCCSCCSEEEEE-----ECCSCGG--GTHHHHHHHEEE---EEEEEEEESSHH--------------
T ss_pred             cccCcEEEeccccccccccceeeeE-----ecCCCHH--HHHHHHHhhcCC---CCEEEEEeCccc--------------
Confidence            46889999999876443  477765     4677765  679999999999   999988653210              


Q ss_pred             hhhhhhhhcCccccCHHHHHHHHHhcCCceeEEEE
Q 022515          250 FDMLMMVLLTGTERDEKEWTKLFTYAGFSDYKIIP  284 (296)
Q Consensus       250 ~~~~~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~  284 (296)
                                    ..++..+.+++.||..+++..
T Consensus       209 --------------Qv~~~~~~l~~~gF~~i~~~E  229 (266)
T d1o54a_         209 --------------QVQETLKKLQELPFIRIEVWE  229 (266)
T ss_dssp             --------------HHHHHHHHHHHSSEEEEEEEC
T ss_pred             --------------HHHHHHHHHHHCCceeEEEEE
Confidence                          234556777888998766553

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=4.6e-12  Score=106.35  Aligned_cols=135  Identities=19%  Similarity=0.244  Sum_probs=102.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC--ccceeEeh----
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS--PADAVLLK----  196 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p--~~D~v~~~----  196 (296)
                      ....+|||+|||+|..++.++..+|+.+++++|+ +..++.|++     ...+++++.+|++++.+  .||+|+++    
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence            4567899999999999999999999999999999 999988876     44689999999999655  49999884    


Q ss_pred             ---------hhhccCCc----------hHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhh
Q 022515          197 ---------WILHDWND----------EECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVL  257 (296)
Q Consensus       197 ---------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (296)
                               .++.+-|.          ....++++++.+.|+|   ||.+++ |.-.     .                 
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~l-Eig~-----~-----------------  240 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLL-EHGW-----Q-----------------  240 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEE-ECCS-----S-----------------
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEE-EECc-----h-----------------
Confidence                     12221111          1235788999999999   666554 4211     0                 


Q ss_pred             cCccccCHHHHHHHHHhcCCceeEEEE-cCCcceEEEEe
Q 022515          258 LTGTERDEKEWTKLFTYAGFSDYKIIP-ILGLRSLIEVY  295 (296)
Q Consensus       258 ~~g~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~  295 (296)
                            ..+.+.+++++.||+.+++.. +.+...++.+|
T Consensus       241 ------q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r  273 (274)
T d2b3ta1         241 ------QGEAVRQAFILAGYHDVETCRDYGDNERVTLGR  273 (274)
T ss_dssp             ------CHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             ------HHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence                  345778899999999777654 56677777765

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.8e-13  Score=115.04  Aligned_cols=112  Identities=15%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------CCCCeeEEec
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------DLANLKYVGG  181 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~  181 (296)
                      ...+++.+.  +.+..+|||||||+|..+..+++.++..+++|+|+ +.+++.|++              ...+++|+.+
T Consensus       140 ~~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         140 VAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            356677776  78889999999999999999999999889999999 888887754              2467999999


Q ss_pred             cCCC-CCC----ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          182 DMFE-AIS----PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       182 D~~~-~~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      |+.+ ++.    .+|+|++.+.+| ++  +....|+++.+.|||   ||++++.+...+.
T Consensus       218 d~~~~~~~~~~~~advi~~~~~~f-~~--~~~~~l~e~~r~LKp---Gg~iv~~~~~~~~  271 (328)
T d1nw3a_         218 DFLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKE---GGRIVSSKPFAPL  271 (328)
T ss_dssp             CTTSHHHHHHHHHCSEEEECCTTT-CH--HHHHHHHHHHTTCCT---TCEEEESSCSSCT
T ss_pred             cccccccccccCcceEEEEcceec-ch--HHHHHHHHHHHhCCC---CcEEEEecccCCC
Confidence            9998 433    368888876654 33  345789999999999   9999988766543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=3.2e-12  Score=104.60  Aligned_cols=142  Identities=13%  Similarity=0.097  Sum_probs=100.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCC--C----CccceeEeh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEA--I----SPADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~--~----p~~D~v~~~  196 (296)
                      ++++.+|||+|||+|..+.++++.. |.-+++++|+ |.+++.+++   ....+..+.+|...+  .    +.+|++++ 
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~-  149 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE-  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence            7789999999999999999999975 7889999999 999887765   456678888887652  1    23666654 


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcC
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAG  276 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aG  276 (296)
                       .+++.+  +...+++++++.|||   ||+++|.......+...++.    .               -..+..++ .+.|
T Consensus       150 -d~~~~~--~~~~~l~~~~~~Lkp---gG~lvi~~ka~~~~~~~~~~----~---------------v~~~v~~l-~~~g  203 (227)
T d1g8aa_         150 -DVAQPT--QAKILIDNAEVYLKR---GGYGMIAVKSRSIDVTKEPE----Q---------------VFREVERE-LSEY  203 (227)
T ss_dssp             -CCCSTT--HHHHHHHHHHHHEEE---EEEEEEEEEGGGTCTTSCHH----H---------------HHHHHHHH-HHTT
T ss_pred             -Eccccc--hHHHHHHHHHHhccc---CCeEEEEEECCccCCCCCHH----H---------------HHHHHHHH-HHcC
Confidence             233333  345789999999999   99988876544333222110    0               11234444 4569


Q ss_pred             CceeEEEEcCCc---ceEEEEeC
Q 022515          277 FSDYKIIPILGL---RSLIEVYP  296 (296)
Q Consensus       277 f~~~~~~~~~~~---~~vi~~~~  296 (296)
                      |++++...+..+   ..++.+||
T Consensus       204 f~iie~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         204 FEVIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             SEEEEEEECTTTSSSEEEEEEEC
T ss_pred             CEEEEEEcCCCCCCceEEEEEEe
Confidence            999998877543   57787775

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.34  E-value=1.7e-12  Score=104.64  Aligned_cols=97  Identities=20%  Similarity=0.227  Sum_probs=78.8

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC--ccceeEehhhhc
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS--PADAVLLKWILH  200 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p--~~D~v~~~~vlh  200 (296)
                      ..|||||||+|.++..+++.+|+..++++|+ +.++..+.+     ..+++.++.+|+.. .  ++  .+|.|++.+...
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            4799999999999999999999999999999 888877654     56789999999876 2  44  489988877765


Q ss_pred             cCCchH------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          201 DWNDEE------CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       201 ~~~d~~------~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++....      ...+|+.++++|||   ||.|+|..
T Consensus       111 ~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~T  144 (204)
T d2fcaa1         111 WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFKT  144 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEEE
T ss_pred             cchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence            433322      13789999999999   99988864

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=6e-13  Score=113.61  Aligned_cols=97  Identities=16%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----C-----CCCeeEEeccCCC---CC---Cccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----D-----LANLKYVGGDMFE---AI---SPAD  191 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----~~ri~~~~~D~~~---~~---p~~D  191 (296)
                      ..+..+|||||||+|.++..|+++  +.+++++|+ +.|++.|++    .     ..+..+...|+..   +.   ..||
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence            456789999999999999999987  679999999 999998865    1     1344556666654   12   2499


Q ss_pred             eeEeh-hhhccCCc-----hHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          192 AVLLK-WILHDWND-----EECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       192 ~v~~~-~vlh~~~d-----~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      +|++. .+++|+++     ++...+|++++++|+|   ||.+++
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~  172 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVI  172 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEE
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEE
Confidence            88864 58888765     3567899999999999   777655

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=1.5e-12  Score=105.98  Aligned_cols=99  Identities=15%  Similarity=0.314  Sum_probs=82.2

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC---
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS---  188 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p---  188 (296)
                      .+++.+.  ++++.+|||||||+|..+..+++.. |..+++++|. +++++.|++     ..+++.++.+|..+..+   
T Consensus        66 ~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence            4556666  7889999999999999999999875 6789999999 999998876     57889999999887322   


Q ss_pred             ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          189 PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       189 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      .||+|++...+++.++        ++.+.|+|   ||+|++.
T Consensus       144 ~fD~I~~~~~~~~~p~--------~l~~~Lkp---GG~lv~p  174 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVPE--------TWFTQLKE---GGRVIVP  174 (213)
T ss_dssp             CEEEEEECSBBSCCCH--------HHHHHEEE---EEEEEEE
T ss_pred             chhhhhhhccHHHhHH--------HHHHhcCC---CcEEEEE
Confidence            4999999999998775        34567999   9998874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=7.8e-12  Score=110.30  Aligned_cols=112  Identities=18%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------CCCCeeE-Ee
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------DLANLKY-VG  180 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~-~~  180 (296)
                      ...+++.+.  +.++.+|||||||+|..+..+++.++..+++|+|+ +.+++.|++              ....+.+ ..
T Consensus       205 i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         205 LSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            456677777  88899999999999999999999998889999999 999988864              1233444 45


Q ss_pred             ccCCC-C-----CCccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          181 GDMFE-A-----ISPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       181 ~D~~~-~-----~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      +++.. +     ++.+|++++.+.+|   +++....|+++.+.|||   ||+|++.+...+.
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LKP---GGrIVs~~~~~~~  338 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAKV---GCKIISLKSLRSL  338 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCCT---TCEEEESSCSSCT
T ss_pred             echhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcCC---CcEEEEecccCCC
Confidence            66665 2     23578998876543   23456889999999999   9999988866544

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.21  E-value=4e-11  Score=96.46  Aligned_cols=97  Identities=20%  Similarity=0.297  Sum_probs=76.3

Q ss_pred             CCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC--ccceeEehhhh
Q 022515          131 LNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS--PADAVLLKWIL  199 (296)
Q Consensus       131 ~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p--~~D~v~~~~vl  199 (296)
                      ...|||||||+|.++..+++.+|+..++++|+ +.++..|.+     ...++.+..+|... .  ++  .+|.|++.+.-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            35799999999999999999999999999999 888877654     56789999999876 2  34  37888765432


Q ss_pred             ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          200 HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       200 h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                       -|+...       ...+|+.+++.|+|   ||.+.+..
T Consensus       112 -Pw~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~T  146 (204)
T d1yzha1         112 -PWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFKT  146 (204)
T ss_dssp             -CCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEEE
T ss_pred             -cccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEEE
Confidence             244322       14789999999999   99987754

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.6e-11  Score=100.37  Aligned_cols=102  Identities=17%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCCC
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFEA  186 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~~  186 (296)
                      .+++.+....+++.+|||||||+|..+..+++. .|..+++++|. +++++.|++          ..+++.+..+|....
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            445555322678899999999999999888885 57889999999 999988865          247899999998873


Q ss_pred             CC---ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          187 IS---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       187 ~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .+   .||+|++...+++.++        .+.+.|||   ||++++.-
T Consensus       145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~Lkp---GG~LV~pv  181 (224)
T d1i1na_         145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKP---GGRLILPV  181 (224)
T ss_dssp             CGGGCCEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEEE
T ss_pred             cchhhhhhhhhhhcchhhcCH--------HHHhhcCC---CcEEEEEE
Confidence            22   4999999999987764        35677999   99998843

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=2.9e-11  Score=103.87  Aligned_cols=119  Identities=15%  Similarity=0.165  Sum_probs=92.4

Q ss_pred             HHHHHHHHccchhc----hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC-----
Q 022515          103 NFFNEAMASDAWLA----TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS-----  171 (296)
Q Consensus       103 ~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----  171 (296)
                      ..|...|....+.+    +..++..++  ..++.+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|++     
T Consensus        69 ~d~~~~~~r~tqiiypkD~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~  146 (324)
T d2b25a1          69 EDYVVLMKRGTAITFPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW  146 (324)
T ss_dssp             HHHHHHSCCSSCCCCHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCCcccccccHHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHh
Confidence            44666676665543    335666666  889999999999999999999986 58899999999 999888764     


Q ss_pred             -----------CCCCeeEEeccCCCC---CC--ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          172 -----------DLANLKYVGGDMFEA---IS--PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       172 -----------~~~ri~~~~~D~~~~---~p--~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                                 ..+++++..+|+.+.   .+  .||.|++     |.+++.  .+|.++.++|||   ||++++.-++
T Consensus       147 ~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp---GG~lv~~~P~  214 (324)
T d2b25a1         147 RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH---GGVCAVYVVN  214 (324)
T ss_dssp             HHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE---EEEEEEEESS
T ss_pred             hhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC---CCEEEEEeCC
Confidence                       357899999998762   22  4899986     556554  579999999999   9999887643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.12  E-value=7.3e-11  Score=96.09  Aligned_cols=97  Identities=20%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCCCCC---ccc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFEAIS---PAD  191 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~~~p---~~D  191 (296)
                      .++..++  ++++.+|||||||+|.++..+++.  ..+++.+|. +..++.|++   ...+++++.+|.....+   +||
T Consensus        61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHhh--hcccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence            4566666  788999999999999999888887  458999999 899988876   56899999999887333   499


Q ss_pred             eeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          192 AVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       192 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +|++...+++.++        .+.+.|+|   ||+|++.
T Consensus       137 ~Iiv~~a~~~ip~--------~l~~qLk~---GGrLV~p  164 (224)
T d1vbfa_         137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILP  164 (224)
T ss_dssp             EEEESSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred             HHHhhcchhhhhH--------HHHHhcCC---CCEEEEE
Confidence            9999888887664        34466999   9998874

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.12  E-value=3e-11  Score=85.45  Aligned_cols=67  Identities=43%  Similarity=0.760  Sum_probs=57.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcc---hhhhHHHhh
Q 022515            9 DTELLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSK---SRCQLRTWF   75 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~---l~~~l~~~~   75 (296)
                      +.+.++++..+|++++||+.+++|++|++|||||.|.++++|+|++|||+++++++..   +.|.|+...
T Consensus         3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~   72 (101)
T d1fp2a1           3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLA   72 (101)
T ss_dssp             STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHH
Confidence            4578899999999999999999999999999999998656899999999999998754   656555443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=9.7e-11  Score=100.77  Aligned_cols=96  Identities=16%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWIL  199 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl  199 (296)
                      .++.+|||||||+|.++..+++..+ .+++++|..++...+++      ..++|+++.+|..+ +.+  .+|+|++..+.
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            3568999999999999998887643 47999999434443332      68899999999988 554  59999988777


Q ss_pred             ccCCch-HHHHHHHHHHHhcccCCCCcEEE
Q 022515          200 HDWNDE-ECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       200 h~~~d~-~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                      |....+ ....++..+.+.|+|   ||+++
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp---~G~ii  137 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAP---DGLIF  137 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence            766554 456789999999999   88776

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=1.3e-10  Score=100.44  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=74.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC------CCCCeeEEeccCCC-CCC--ccceeEehhhh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS------DLANLKYVGGDMFE-AIS--PADAVLLKWIL  199 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~D~~~-~~p--~~D~v~~~~vl  199 (296)
                      .++.+|||||||+|.++..++++. ..+++++|..+++..|++      ..++++++.+|+.+ +.|  .+|+|++..+.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            356899999999999998777763 348999999556655544      67899999999988 655  49999997777


Q ss_pred             ccCCch-HHHHHHHHHHHhcccCCCCcEEE
Q 022515          200 HDWNDE-ECVKILKKCKEAITSDGKKGKVI  228 (296)
Q Consensus       200 h~~~d~-~~~~iL~~~~~aL~p~~~gG~ll  228 (296)
                      |....+ ....++..+.+.|||   ||+++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~Lkp---gG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVE---GGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCC---CeEEE
Confidence            665543 345678888899999   77765

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=2.6e-10  Score=90.91  Aligned_cols=99  Identities=14%  Similarity=0.237  Sum_probs=73.9

Q ss_pred             CCCCEEEEecCCchHHH----HHHHHHC----CCCeEEeccc-hhHhhccCC----------------------------
Q 022515          129 EGLNSLVDVGGGIGTAA----KAIAKAF----PKLECTCFDL-PHVVNGLDS----------------------------  171 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~----~~l~~~~----p~~~~~~~D~-~~~~~~a~~----------------------------  171 (296)
                      .+..+|+++|||+|.-.    +.+.+..    +..++++.|+ +.+++.|++                            
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34579999999999843    3334332    2457899999 888887753                            


Q ss_pred             --------CCCCeeEEeccCCCC-C---CccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          172 --------DLANLKYVGGDMFEA-I---SPADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       172 --------~~~ri~~~~~D~~~~-~---p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                              ...++.+...+...+ .   +++|+|+|.+||++++++...+++++++++|+|   ||.|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence                    013355666666652 2   259999999999999999989999999999999   8876664

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=8.2e-10  Score=91.95  Aligned_cols=121  Identities=14%  Similarity=0.102  Sum_probs=90.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC--CccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI--SPADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~--p~~D~v~~~~v  198 (296)
                      ..++.+|||+|||+|.+++.+++. +..+++++|+ |..++.+++      ..++|++..+|.++-.  ..||.|++...
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence            457889999999999999999987 4579999999 999888765      5789999999998832  24999987421


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhcCCc
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYAGFS  278 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~aGf~  278 (296)
                            .....+|..+.+.|+|   ||.|.+.+....+...                      ....+.+.++.+..||+
T Consensus       184 ------~~~~~~l~~a~~~l~~---gG~lh~~~~~~~~~~~----------------------~~~~e~~~~~~~~~g~~  232 (260)
T d2frna1         184 ------VRTHEFIPKALSIAKD---GAIIHYHNTVPEKLMP----------------------REPFETFKRITKEYGYD  232 (260)
T ss_dssp             ------SSGGGGHHHHHHHEEE---EEEEEEEEEEEGGGTT----------------------TTTHHHHHHHHHHTTCE
T ss_pred             ------CchHHHHHHHHhhcCC---CCEEEEEeccccccch----------------------hhHHHHHHHHHHHcCCc
Confidence                  1233678888999999   8887766654332111                      11456677888899997


Q ss_pred             ee
Q 022515          279 DY  280 (296)
Q Consensus       279 ~~  280 (296)
                      +.
T Consensus       233 v~  234 (260)
T d2frna1         233 VE  234 (260)
T ss_dssp             EE
T ss_pred             eE
Confidence            64

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.5e-10  Score=95.28  Aligned_cols=98  Identities=18%  Similarity=0.172  Sum_probs=75.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-CCC--ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-AIS--PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~~p--~~D~v~~~~v  198 (296)
                      ..++.+|||||||+|.++..++++.+ .+++++|. +.+....+.     ..++|+++.+|..+ +.+  .+|+|++..+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            44678999999999999998888754 48999999 655432211     67899999999988 554  5999999888


Q ss_pred             hccCCchHH-HHHHHHHHHhcccCCCCcEEEE
Q 022515          199 LHDWNDEEC-VKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       199 lh~~~d~~~-~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      .|....+.. ..++....+.|+|   ||+++-
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~iip  140 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAK---GGSVYP  140 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEE---EEEEES
T ss_pred             eeecccccccHHHHHHHHhcCCC---CcEEec
Confidence            877666543 4667767789999   887763

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=2.9e-10  Score=90.26  Aligned_cols=115  Identities=20%  Similarity=0.248  Sum_probs=88.6

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCC-C---
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFE-A---  186 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~-~---  186 (296)
                      +..++++.+.  ..++..+||++||+|.++..+++++|+.+++++|. +++++.|++    ..+|+.++.++|.+ .   
T Consensus        11 ll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~   88 (192)
T d1m6ya2          11 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL   88 (192)
T ss_dssp             THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred             HHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence            4566777776  67788999999999999999999999999999999 999999876    47899999999875 2   


Q ss_pred             ----CCccceeEeh-----hhhccCC--chHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          187 ----ISPADAVLLK-----WILHDWN--DEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       187 ----~p~~D~v~~~-----~vlh~~~--d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                          ...+|.|++.     +-+-.-.  -....+.|..+.+.|+|   ||+++++.....
T Consensus        89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii~f~s~  145 (192)
T d1m6ya2          89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVISFHSL  145 (192)
T ss_dssp             HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEEESSHH
T ss_pred             HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeeeccccH
Confidence                2346777653     2221110  11234779999999999   999999886543

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.93  E-value=7.9e-10  Score=89.26  Aligned_cols=98  Identities=20%  Similarity=0.292  Sum_probs=78.9

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCCC---c
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAIS---P  189 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~p---~  189 (296)
                      .+++.++  ++++.+|||||||+|..+..+++.. +.+++.+|. +++++.+++     ..+++.++.+|.....+   +
T Consensus        69 ~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p  145 (215)
T d1jg1a_          69 IMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  145 (215)
T ss_dssp             HHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence            4555666  7888999999999999999888764 467889998 899988876     56999999999988433   5


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ||.|++...+...|+.        +.+.|+|   ||++++.
T Consensus       146 fD~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p  175 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP  175 (215)
T ss_dssp             EEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred             ceeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence            9999999888866652        4456899   9998874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=1.2e-09  Score=88.87  Aligned_cols=102  Identities=18%  Similarity=0.206  Sum_probs=78.4

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHH------CCCCeEEeccc-hhHhhccCC----------CCCCeeEEec
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKA------FPKLECTCFDL-PHVVNGLDS----------DLANLKYVGG  181 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~  181 (296)
                      .++..+...+.++.+|||||||+|.++..+++.      ++..+++.+|. ++.++.|++          ...++.+..+
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~  148 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  148 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence            445555222678899999999999999888775      34568999999 888888765          2468999999


Q ss_pred             cCCCCCC---ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          182 DMFEAIS---PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       182 D~~~~~p---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      |..+..+   .||.|++...+++.|+        .+.+.|+|   ||++++.-
T Consensus       149 d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~---gG~lV~pv  190 (223)
T d1r18a_         149 DGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLAS---GGRLIVPV  190 (223)
T ss_dssp             CGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEE---EEEEEEEE
T ss_pred             ccccccccccceeeEEEEeechhchH--------HHHHhcCC---CcEEEEEE
Confidence            9988332   5999999999887664        24567999   99998743

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.1e-08  Score=80.97  Aligned_cols=72  Identities=11%  Similarity=-0.009  Sum_probs=59.2

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC----C-----Cccce
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA----I-----SPADA  192 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~----~-----p~~D~  192 (296)
                      ....++||||||+|..+..++.++|+++++++|+ +.+++.|++      ..+|+.++..+....    .     ..||+
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            4557999999999999999999999999999999 999998887      689999987654331    1     14999


Q ss_pred             eEehhhhc
Q 022515          193 VLLKWILH  200 (296)
Q Consensus       193 v~~~~vlh  200 (296)
                      |+++=-.+
T Consensus       140 ivsNPPY~  147 (250)
T d2h00a1         140 CMCNPPFF  147 (250)
T ss_dssp             EEECCCCC
T ss_pred             EEecCccc
Confidence            99876554

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.81  E-value=1.2e-09  Score=75.78  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515           14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ   76 (296)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~   76 (296)
                      .....+++++.||+.+.+|++|+++||||+|.+  ||.|++|||+++|++++.+.|-|+....
T Consensus         6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~~~~~l~rLlr~L~a   66 (92)
T d1qzza1           6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDTHPQALSRLVRHLTV   66 (92)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCcCchHHHHHHHHHHH
Confidence            456789999999999999999999999999986  8999999999999999999987766543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.69  E-value=2.2e-08  Score=76.27  Aligned_cols=96  Identities=9%  Similarity=0.035  Sum_probs=69.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC--C--CCccceeEehhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE--A--ISPADAVLLKWI  198 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~--~--~p~~D~v~~~~v  198 (296)
                      .+.+|||+|||+|.++++.+.+.. .+++.+|. +.+++.+++      ..++++++.+|..+  +  ...||+|++.=-
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            467999999999999999888754 38999999 888887665      56889999999876  2  235999988311


Q ss_pred             hccCCchHHHHHHHHHH--HhcccCCCCcEEEEEeee
Q 022515          199 LHDWNDEECVKILKKCK--EAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~e~~  233 (296)
                         +........|..+.  +.|+|   ||. +++|..
T Consensus        93 ---y~~~~~~~~l~~i~~~~~L~~---~g~-iiiE~~  122 (152)
T d2esra1          93 ---YAKETIVATIEALAAKNLLSE---QVM-VVCETD  122 (152)
T ss_dssp             ---SHHHHHHHHHHHHHHTTCEEE---EEE-EEEEEE
T ss_pred             ---hccchHHHHHHHHHHCCCcCC---CeE-EEEEeC
Confidence               11223345666665  35898   555 556643

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.67  E-value=9.8e-09  Score=70.05  Aligned_cols=56  Identities=16%  Similarity=0.154  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhh
Q 022515           19 VWNHIFNFINSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQ   76 (296)
Q Consensus        19 ~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~   76 (296)
                      .+..+.+++.+.+|++|+++||||+|.+  ||+|++|||+++|+++..+.|-|+....
T Consensus         5 ~l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~~~~~l~rlLr~l~a   60 (85)
T d1tw3a1           5 TLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDTRPEALLRLIRHLVA   60 (85)
T ss_dssp             HHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCcChhHHHHHHHHHHH
Confidence            3556688999999999999999999986  8999999999999999999886665543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.65  E-value=2.5e-08  Score=83.02  Aligned_cols=67  Identities=18%  Similarity=0.307  Sum_probs=56.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCCC----ccceeEeh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAIS----PADAVLLK  196 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~p----~~D~v~~~  196 (296)
                      .+..+++|+|||+|..+..++ .+|+.+++++|+ +..++.|++      ..+++.+..+|++++.+    .||+|+++
T Consensus       109 ~~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         109 YGIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             HTCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             ccccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            345689999999999999987 479999999999 999988876      56889999999988532    58999885

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=2.3e-08  Score=85.77  Aligned_cols=100  Identities=18%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---C----Ccccee
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---I----SPADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---~----p~~D~v  193 (296)
                      .+++.+|||++||+|.+++.++.... .+++.+|+ +.+++.+++      ..++++++.+|.++.   .    ..||+|
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            35678999999999999999888743 48999999 999988876      457899999998762   1    249999


Q ss_pred             Eehh---hhccCCch----HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          194 LLKW---ILHDWNDE----ECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       194 ~~~~---vlh~~~d~----~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ++.-   ..+.-...    .-.++++.+.+.|+|   ||.|+...
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~s  263 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTCS  263 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEEE
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEEe
Confidence            9832   11111111    124588889999999   88777665

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.64  E-value=1.1e-08  Score=81.06  Aligned_cols=66  Identities=21%  Similarity=0.308  Sum_probs=54.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEeh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLK  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~  196 (296)
                      .+.+|||+|||+|.+++.++...+ .+++++|+ +.+++.|++...+++++.+|+.+....||+|+++
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N  114 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN  114 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence            367999999999999988777643 47999999 8999988875678999999987744469999985

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=9.6e-08  Score=81.17  Aligned_cols=98  Identities=16%  Similarity=0.162  Sum_probs=75.6

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----------CCCCeeEEeccCCC---CCC-cccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----------DLANLKYVGGDMFE---AIS-PADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~D~~~---~~p-~~D~v  193 (296)
                      +.+++||.||+|.|..+.++++..|..+++++|+ |.+++.+++          ..+|++++.+|..+   ..+ .||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4678999999999999999998888889999999 999988876          36799999999887   223 59999


Q ss_pred             EehhhhccCC----ch--HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          194 LLKWILHDWN----DE--ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       194 ~~~~vlh~~~----d~--~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ++... ..+.    ..  -..++++.+++.|+|   ||.+++.
T Consensus       156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~  194 (312)
T d1uira_         156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ  194 (312)
T ss_dssp             EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred             EEeCC-CcccccchhhhhhhHHHHHHHHHhcCC---CceEEEe
Confidence            96431 1111    11  125789999999999   6755543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=1.3e-08  Score=82.17  Aligned_cols=100  Identities=13%  Similarity=0.099  Sum_probs=74.3

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCCC---------Ccc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEAI---------SPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~~---------p~~  190 (296)
                      ..++.+|||||||+|..++.+++..+ +.+++.+|. ++..+.|++      ..++|+++.||..+-.         ..|
T Consensus        54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            34568999999999999999999875 689999999 888888875      6789999999987521         248


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      |++++.+   +.........+.++.+.|+|   || ++|+|.+.
T Consensus       134 D~ifiD~---~~~~~~~~~~l~~~~~lLkp---GG-vIv~Ddvl  170 (214)
T d2cl5a1         134 DMVFLDH---WKDRYLPDTLLLEKCGLLRK---GT-VLLADNVI  170 (214)
T ss_dssp             EEEEECS---CGGGHHHHHHHHHHTTCEEE---EE-EEEESCCC
T ss_pred             ceeeecc---cccccccHHHHHHHhCccCC---Cc-EEEEeCcC
Confidence            9998852   22222222346677788999   55 56666544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.1e-08  Score=79.26  Aligned_cols=98  Identities=14%  Similarity=0.227  Sum_probs=76.8

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC---------CCcc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA---------ISPA  190 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~---------~p~~  190 (296)
                      ..+.++||+||+|+|..+..+++..| +.+++.+|. |+..+.|++      ..+++++..||..+.         ...|
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            45678999999999999999999876 689999999 888888876      679999999997651         1249


Q ss_pred             ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          191 DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       191 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      |+|++..     ..+.-...+..+.+.|+|   ||.|++-+..
T Consensus       137 D~ifiD~-----dk~~y~~~~~~~~~lL~~---GGvii~Dn~l  171 (219)
T d2avda1         137 DVAVVDA-----DKENCSAYYERCLQLLRP---GGILAVLRVL  171 (219)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEE---EEEEEEECCS
T ss_pred             cEEEEeC-----CHHHHHHHHHHHHHHhcC---CcEEEEeCCc
Confidence            9999942     333446778899999999   5555444433

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=9.8e-08  Score=76.05  Aligned_cols=67  Identities=22%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCCCccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAISPADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~p~~D~v~~~~  197 (296)
                      .+.+|||+|||+|.++++++.+. ..+++++|+ +.+++.+++    ...+.++..+|..+....||+|++.=
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nP  117 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNP  117 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECC
T ss_pred             CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcC
Confidence            45799999999999999887653 358999999 888887765    56788999999877444699998853

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=9.6e-08  Score=80.30  Aligned_cols=99  Identities=13%  Similarity=0.140  Sum_probs=74.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CCC-ccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AIS-PADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~p-~~D~v~  194 (296)
                      +.+.+||-||||.|..+.++++..|..+++++|+ |.|++.+++         ..+|++++.+|..+   ..+ .||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            4578999999999999999998777789999999 999998877         36899999999876   222 599999


Q ss_pred             ehhhhccC-Cch--HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          195 LKWILHDW-NDE--ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       195 ~~~vlh~~-~d~--~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +...-..- +..  -..++++.+++.|+|   ||.+++.
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~q  203 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE  203 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEEe
Confidence            74322110 110  125789999999999   6765543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.5e-07  Score=75.84  Aligned_cols=98  Identities=15%  Similarity=0.149  Sum_probs=74.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CCC-ccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AIS-PADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~p-~~D~v~  194 (296)
                      +.+++||-||+|.|..+.++++..+..+++++|+ |.|++.+++         ..+|++++.+|..+   ..+ .||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            4678999999999999999998777889999999 999999976         36899999999776   223 599999


Q ss_pred             ehhhhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          195 LKWILHDWNDE---ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       195 ~~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +-. .+.....   -..++++.+++.|+|   ||.+++.
T Consensus       157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q  191 (285)
T d2o07a1         157 TDS-SDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ  191 (285)
T ss_dssp             EEC-C-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred             EcC-CCCCCcccccccHHHHHHHHHhcCC---CCeEEEe
Confidence            853 2211111   123679999999999   6665443

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.38  E-value=1.6e-07  Score=76.08  Aligned_cols=98  Identities=11%  Similarity=0.112  Sum_probs=77.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC----------CCc
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA----------ISP  189 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~----------~p~  189 (296)
                      ..+..+||+||+++|..+..+++..| +.+++.+|. |+.++.|++      ..++|+++.||..+.          ...
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            45678999999999999999999887 679999999 888888776      578999999998652          124


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      ||+|++-.     ....-...+..+.+.|+|   ||.|++-+..
T Consensus       137 fD~iFiDa-----~k~~y~~~~e~~~~ll~~---gGiii~DNvl  172 (227)
T d1susa1         137 YDFIFVDA-----DKDNYLNYHKRLIDLVKV---GGVIGYDNTL  172 (227)
T ss_dssp             BSEEEECS-----CSTTHHHHHHHHHHHBCT---TCCEEEETTT
T ss_pred             eeEEEecc-----chhhhHHHHHHHHhhcCC---CcEEEEccCC
Confidence            99999942     334456789999999999   6655554443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.38  E-value=2.3e-07  Score=79.19  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=71.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC---C----CccceeEeh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA---I----SPADAVLLK  196 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~---~----p~~D~v~~~  196 (296)
                      .+.+|||++||+|.++++++..  ..+++.+|. +.+++.+++     ..++++++.+|.++-   .    ..||+|++.
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            4679999999999999998865  568999999 999998876     346899999998761   1    259999983


Q ss_pred             hhhccCC-------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          197 WILHDWN-------DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       197 ~vlh~~~-------d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ---....       ...-.++++.+.+.|+|   ||.|+...
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~s  261 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATAS  261 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence            2110000       11124688999999999   78776654

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.38  E-value=1.5e-07  Score=78.62  Aligned_cols=96  Identities=15%  Similarity=0.195  Sum_probs=72.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------------CCCCeeEEeccCCC---CCCc
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------------DLANLKYVGGDMFE---AISP  189 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~~D~~~---~~p~  189 (296)
                      .++.+||.||||.|..+.++++ +|..+++++|+ |.+++.|++               ..+|++++.+|..+   .-..
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            5678999999999999999886 56678999999 999998865               25799999999875   2346


Q ss_pred             cceeEehhhhccCCchH---HHHHHHHHHHhcccCCCCcEEEE
Q 022515          190 ADAVLLKWILHDWNDEE---CVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ||+|++-.. .......   ..++++.+++.|+|   ||.+++
T Consensus       150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~  188 (276)
T d1mjfa_         150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNN---PGIYVT  188 (276)
T ss_dssp             EEEEEEECC-CCC-----TTSHHHHHHHHHHEEE---EEEEEE
T ss_pred             CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCC---CceEEE
Confidence            999987432 2121111   25789999999999   665544

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.37  E-value=1.7e-07  Score=78.07  Aligned_cols=98  Identities=17%  Similarity=0.132  Sum_probs=75.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC--C-C-CccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE--A-I-SPADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~--~-~-p~~D~v~  194 (296)
                      ..+.+||-||+|.|..+.++++..|..+++++|+ |.|++.|++         ...|++++.+|...  . . ..||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4668999999999999999998777789999999 999998876         46899999999876  2 2 2599999


Q ss_pred             ehhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEE
Q 022515          195 LKWILHDWNDE--ECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       195 ~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      +-..-..-+..  -..++++.+++.|+|   ||.++.
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~  187 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVA  187 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEE
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCC---CceEEE
Confidence            85321110110  134789999999999   666554

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.34  E-value=2.9e-07  Score=71.26  Aligned_cols=95  Identities=12%  Similarity=0.094  Sum_probs=63.1

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-----CCCccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-----AISPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-----~~p~~D~v~~  195 (296)
                      ...+.+|||+|||+|.++++.+.+  +.+++.+|. +.+++.+++      ..+++....+|.+.     ....||+|++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            456789999999999999988887  568999999 999988765      45666666666542     1235999988


Q ss_pred             hhhhccCCchHHHHHHHHHH--HhcccCCCCcEEEEEee
Q 022515          196 KWILHDWNDEECVKILKKCK--EAITSDGKKGKVIIIDM  232 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~e~  232 (296)
                      .=- ++....   +++..+.  ..|+|   || ++++|.
T Consensus       117 DPP-Y~~~~~---~~l~~l~~~~ll~~---~g-~ivie~  147 (171)
T d1ws6a1         117 APP-YAMDLA---ALFGELLASGLVEA---GG-LYVLQH  147 (171)
T ss_dssp             CCC-TTSCTT---HHHHHHHHHTCEEE---EE-EEEEEE
T ss_pred             ccc-cccCHH---HHHHHHHHcCCcCC---Ce-EEEEEe
Confidence            311 112222   2333332  46888   55 555554

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.32  E-value=6.7e-07  Score=75.34  Aligned_cols=101  Identities=18%  Similarity=0.237  Sum_probs=73.4

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCCC-------CCccce
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEA-------ISPADA  192 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~-------~p~~D~  192 (296)
                      ..++.+|||+.||+|.++..++..  +.++|.+|. +.+++.|++       ...+++|+++|.++-       ...||+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            446789999999999999988876  568999999 899988876       235799999999862       124999


Q ss_pred             eEeh---hhhc----cCC-chHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          193 VLLK---WILH----DWN-DEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       193 v~~~---~vlh----~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      |++.   +.-.    .|. ......+++.+.+.|+|   ||.++++...
T Consensus       208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~t~~  253 (309)
T d2igta1         208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVLTAY  253 (309)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEEEEC
T ss_pred             EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEEecC
Confidence            9982   1110    112 12234567788889998   7876666543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.32  E-value=2.5e-07  Score=78.11  Aligned_cols=99  Identities=15%  Similarity=0.126  Sum_probs=72.4

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---C-CCccceeE
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---A-ISPADAVL  194 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~-~p~~D~v~  194 (296)
                      +.+.+||-||+|.|..+.++++..|-.+++++|+ |.|++.+++         ..+|++++.+|..+   . ...||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            4678999999999999999998777679999999 999998876         35899999999876   2 23599999


Q ss_pred             ehhhhccCCc--hHHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          195 LKWILHDWND--EECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       195 ~~~vlh~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      +-..--.-+.  --..++++.+++.|+|   ||.++..
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~q  219 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKE---DGILSSQ  219 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEE---EEEEEEE
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCC---CcEEEEe
Confidence            8432111011  1235789999999999   6665543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.32  E-value=2.7e-07  Score=77.45  Aligned_cols=98  Identities=16%  Similarity=0.179  Sum_probs=75.5

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---------CCCCeeEEeccCCC---CCC--cccee
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---------DLANLKYVGGDMFE---AIS--PADAV  193 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~D~~~---~~p--~~D~v  193 (296)
                      +++.+||=||+|.|..+.++++..|..+++++|+ |.|++.+++         ..+|++++.+|.++   ..+  .||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            4678999999999999999999777778999999 999999877         37999999999765   222  59999


Q ss_pred             EehhhhccCCch---HHHHHHHHHHHhcccCCCCcEEEEE
Q 022515          194 LLKWILHDWNDE---ECVKILKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       194 ~~~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~  230 (296)
                      ++-.. ......   -..++++.+++.|+|   ||.+++.
T Consensus       159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q  194 (290)
T d1xj5a_         159 IVDSS-DPIGPAKELFEKPFFQSVARALRP---GGVVCTQ  194 (290)
T ss_dssp             EECCC-CTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred             EEcCC-CCCCcchhhCCHHHHHHHHHhcCC---CcEEEEe
Confidence            97432 111111   125789999999999   6665553

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.28  E-value=4.8e-07  Score=74.02  Aligned_cols=87  Identities=14%  Similarity=0.228  Sum_probs=68.7

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc-
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP-  189 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~-  189 (296)
                      +...+++...  ..+..+|||||||+|.++..|++.  ..+++++|+ +.+++.+++   ..++++++.+|+.+ +++. 
T Consensus        17 ii~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~   92 (245)
T d1yuba_          17 VLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             THHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccc
Confidence            3466777766  678889999999999999999998  458999999 888888776   45789999999999 7664 


Q ss_pred             cceeEehhhhccCCchH
Q 022515          190 ADAVLLKWILHDWNDEE  206 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~  206 (296)
                      .+..++++.=++++.+-
T Consensus        93 ~~~~vv~NLPY~Ist~i  109 (245)
T d1yuba_          93 QRYKIVGNIPYHLSTQI  109 (245)
T ss_dssp             SEEEEEEECCSSSCHHH
T ss_pred             eeeeEeeeeehhhhHHH
Confidence            44556667667777653

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.23  E-value=1.1e-06  Score=71.31  Aligned_cols=92  Identities=11%  Similarity=0.243  Sum_probs=66.8

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CCCc-
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AISP-  189 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~p~-  189 (296)
                      +...+++...  ..+..+|||||||+|.++..|++..  .+++++|+ +..++..++   ..++++++.+|+.+ +++. 
T Consensus         9 i~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~   84 (235)
T d1qama_           9 NIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN   84 (235)
T ss_dssp             HHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccc
Confidence            3455666666  6788999999999999999999984  57999998 888877665   56899999999998 6653 


Q ss_pred             cceeEehhhhccCCchHHHHHHHHHH
Q 022515          190 ADAVLLKWILHDWNDEECVKILKKCK  215 (296)
Q Consensus       190 ~D~v~~~~vlh~~~d~~~~~iL~~~~  215 (296)
                      ....+.++.    |..-...++.++.
T Consensus        85 ~~~~vv~NL----PYnIss~il~~ll  106 (235)
T d1qama_          85 QSYKIFGNI----PYNISTDIIRKIV  106 (235)
T ss_dssp             CCCEEEEEC----CGGGHHHHHHHHH
T ss_pred             ccceeeeee----hhhhhHHHHHHHH
Confidence            233444444    3333345555554

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.23  E-value=6.2e-07  Score=63.25  Aligned_cols=51  Identities=27%  Similarity=0.285  Sum_probs=44.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCCCC---CCHHHHHHHcCC
Q 022515           12 LLEAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHGKP---MTLNELVSALTI   62 (296)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~~~---~t~~eLA~~~~~   62 (296)
                      ..+.....++++.++..+.+|++|+||||||+|..+++|   +|+.|||.++.+
T Consensus         3 ~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~   56 (110)
T d1fp1d1           3 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPA   56 (110)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCG
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCC
Confidence            445677889999999999999999999999999876544   899999999876

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=1.1e-06  Score=68.79  Aligned_cols=96  Identities=13%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC--CC--CccceeEehhhh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE--AI--SPADAVLLKWIL  199 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~--~~--p~~D~v~~~~vl  199 (296)
                      .+.+|||++||+|.++++.+.+.. .+++.+|. +.+++.+++     ...+++++.+|.++  ..  ..||+|++.=-.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence            346899999999999999888854 38999999 888887765     46778999999876  22  259999994221


Q ss_pred             ccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeee
Q 022515          200 HDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMI  233 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~  233 (296)
                         ......+++..+.+  .|++    +.++++|..
T Consensus       122 ---~~~~~~~~l~~l~~~~~L~~----~~iIiiE~~  150 (183)
T d2fpoa1         122 ---RRGLLEETINLLEDNGWLAD----EALIYVESE  150 (183)
T ss_dssp             ---STTTHHHHHHHHHHTTCEEE----EEEEEEEEE
T ss_pred             ---ccchHHHHHHHHHHCCCCCC----CeEEEEEec
Confidence               12223455666654  4888    456666654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.13  E-value=1.1e-06  Score=74.64  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=71.0

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCCC------CC-ccce
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFEA------IS-PADA  192 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~~------~p-~~D~  192 (296)
                      ..++.+|||+.||+|.++++.+... ..+++.+|+ +..++.+++       ...+++++.+|.++-      .+ .||+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            3467899999999999998877642 347999999 888887765       246899999999762      12 4999


Q ss_pred             eEeh---hhh---ccCC-chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          193 VLLK---WIL---HDWN-DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       193 v~~~---~vl---h~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      |++.   +.-   .-+. ..+-.++++.+.+.|+|   ||.|++..
T Consensus       221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~p---gG~l~~~s  263 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAST  263 (317)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCC---CCEEEEEe
Confidence            9983   100   0011 11234789999999999   77766644

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.06  E-value=3.8e-06  Score=65.48  Aligned_cols=97  Identities=20%  Similarity=0.141  Sum_probs=70.1

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCCC-------CCccceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFEA-------ISPADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~~-------~p~~D~v~~  195 (296)
                      .+.+|||+.||+|.++.+.+.+.. .+++.+|. +.+++.+++      ..+++++..+|.++-       ...||+|++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence            468999999999999999999853 37999999 888887765      466899999998751       124999998


Q ss_pred             hhhhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeee
Q 022515          196 KWILHDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~~  234 (296)
                      .=-.   .......+|..+.+  .|+|   +| ++|+|...
T Consensus       120 DPPY---~~~~~~~~l~~i~~~~~L~~---~g-iIi~E~~~  153 (182)
T d2fhpa1         120 DPPY---AKQEIVSQLEKMLERQLLTN---EA-VIVCETDK  153 (182)
T ss_dssp             CCCG---GGCCHHHHHHHHHHTTCEEE---EE-EEEEEEET
T ss_pred             chhh---hhhHHHHHHHHHHHCCCCCC---CE-EEEEEcCC
Confidence            3111   12234567777764  5898   44 66677643

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.04  E-value=4.2e-06  Score=58.67  Aligned_cols=61  Identities=26%  Similarity=0.277  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcchhcccCC--CCCCHHHHHHHcCCCC-c---chhhhHHHh
Q 022515           14 EAQTHVWNHIFNFINSMTLKCAIQLGIPDIISKHG--KPMTLNELVSALTINP-S---KSRCQLRTW   74 (296)
Q Consensus        14 ~~~~~~~~~~~g~~~~~~l~~a~~l~lf~~L~~~~--~~~t~~eLA~~~~~~~-~---~l~~~l~~~   74 (296)
                      +..-..++++++++.+.+|++|++|||||+|..+|  .++|..|||.++..+. .   .+.|.|+-.
T Consensus         6 e~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~L   72 (107)
T d1kyza1           6 EANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLL   72 (107)
T ss_dssp             HHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence            34446678999999999999999999999998754  4689999999998853 2   355544433

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.04  E-value=6.6e-06  Score=63.92  Aligned_cols=111  Identities=20%  Similarity=0.260  Sum_probs=82.8

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC-C------
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE-A------  186 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~-~------  186 (296)
                      +..++++.+.  ..++..++|..+|.|.++..++++  +.+++++|. |.++..+++ ...|+.++.++|.+ .      
T Consensus         6 ll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~   81 (182)
T d1wg8a2           6 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL   81 (182)
T ss_dssp             THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence            3456666666  678889999999999999999997  569999999 999988876 67899999998876 2      


Q ss_pred             -CCccceeEe-----hhhhccCCch--HHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          187 -ISPADAVLL-----KWILHDWNDE--ECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       187 -~p~~D~v~~-----~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                       ...+|.|++     +.-+.+-..+  .....|......|+|   ||+++++...
T Consensus        82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii~fh  133 (182)
T d1wg8a2          82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVIAFH  133 (182)
T ss_dssp             TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEEECS
T ss_pred             CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEEecc
Confidence             123666655     3333322211  223578888999999   9999888753

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=6.1e-06  Score=65.43  Aligned_cols=93  Identities=20%  Similarity=0.266  Sum_probs=71.6

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCC--CCccceeEehhhhcc
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEA--ISPADAVLLKWILHD  201 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~--~p~~D~v~~~~vlh~  201 (296)
                      ...+++|||+|.|.-++-++-.+|+.+++.+|. ..=+...+.     ..++++++.....+.  ...||+|+++.+-  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~--  142 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence            346899999999999999999999999999997 544433322     457899999888873  3369999987653  


Q ss_pred             CCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          202 WNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       202 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                        +  ...++.-+...+++   +|++++.-
T Consensus       143 --~--~~~ll~~~~~~l~~---~g~~~~~K  165 (207)
T d1jsxa_         143 --S--LNDMVSWCHHLPGE---QGRFYALK  165 (207)
T ss_dssp             --S--HHHHHHHHTTSEEE---EEEEEEEE
T ss_pred             --C--HHHHHHHHHHhcCC---CcEEEEEC
Confidence              2  23677778888998   88887765

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.93  E-value=2.4e-05  Score=62.35  Aligned_cols=105  Identities=10%  Similarity=0.067  Sum_probs=71.0

Q ss_pred             HHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCC-CeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CC-Ccccee
Q 022515          118 SVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPK-LECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AI-SPADAV  193 (296)
Q Consensus       118 ~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~-p~~D~v  193 (296)
                      ..+++.+.  ...+.+|||.|||+|.++..+.++.+. .+++++|+ +..+..+    .+..+..+|++. +. ..||++
T Consensus         9 ~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----~~~~~~~~~~~~~~~~~~fd~i   82 (223)
T d2ih2a1           9 DFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWEPGEAFDLI   82 (223)
T ss_dssp             HHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCCCSSCEEEE
T ss_pred             HHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----ccceeeeeehhcccccccccee
Confidence            34444444  456789999999999999999887665 57999999 6554433    345677788877 32 358888


Q ss_pred             EehhhhccCC--ch-------------------------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          194 LLKWILHDWN--DE-------------------------ECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       194 ~~~~vlh~~~--d~-------------------------~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +..-......  ..                         -...++.++.+.|+|   ||++.++-
T Consensus        83 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I~  144 (223)
T d2ih2a1          83 LGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFVV  144 (223)
T ss_dssp             EECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEEE
Confidence            8754321100  00                         123567888899999   89887764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.87  E-value=7e-06  Score=69.94  Aligned_cols=100  Identities=11%  Similarity=0.146  Sum_probs=71.9

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHC-----CCCeEEeccc-hhHhhccCC----CCCCeeEEeccCCCCC--CccceeEeh
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAF-----PKLECTCFDL-PHVVNGLDS----DLANLKYVGGDMFEAI--SPADAVLLK  196 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~D~~~~~--p~~D~v~~~  196 (296)
                      ....+|+|.+||+|.++.++.++.     +..+++++|+ +.++..|+.    ......+..+|.....  ..||+|++.
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N  195 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  195 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence            455789999999999999987642     4557999999 888877764    4667778888887733  359999886


Q ss_pred             hhhcc-CCch---------------HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          197 WILHD-WNDE---------------ECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       197 ~vlh~-~~d~---------------~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      =-... +.++               .-..++.++.+.|+|   ||++.++-
T Consensus       196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I~  243 (328)
T d2f8la1         196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFLV  243 (328)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEEE
T ss_pred             CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEEe
Confidence            32211 1111               112469999999999   89877755

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=5.5e-05  Score=62.49  Aligned_cols=93  Identities=16%  Similarity=0.244  Sum_probs=67.2

Q ss_pred             chHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEeccCCC-CC
Q 022515          116 ATSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVGGDMFE-AI  187 (296)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~D~~~-~~  187 (296)
                      +...+++...  ..+..+||+||+|.|.++..|+++.  .+++++++ +..++..++      ..++++++.+|+.+ +.
T Consensus         9 i~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~   84 (278)
T d1zq9a1           9 IINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL   84 (278)
T ss_dssp             HHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred             HHHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence            3455666665  6677899999999999999999985  47888888 777766543      34789999999999 66


Q ss_pred             CccceeEehhhhccCCchHHHHHHHHHHHh
Q 022515          188 SPADAVLLKWILHDWNDEECVKILKKCKEA  217 (296)
Q Consensus       188 p~~D~v~~~~vlh~~~d~~~~~iL~~~~~a  217 (296)
                      |..+.++.     +.|..-...++.++...
T Consensus        85 ~~~~~vV~-----NLPY~Iss~il~~~~~~  109 (278)
T d1zq9a1          85 PFFDTCVA-----NLPYQISSPFVFKLLLH  109 (278)
T ss_dssp             CCCSEEEE-----ECCGGGHHHHHHHHHHC
T ss_pred             hhhhhhhc-----chHHHHHHHHHHHHHhh
Confidence            66555544     34444445666665544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.78  E-value=4e-05  Score=61.83  Aligned_cols=123  Identities=20%  Similarity=0.276  Sum_probs=85.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccC---C--CCCCeeEEeccCCC-----CC-CccceeEe
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLD---S--DLANLKYVGGDMFE-----AI-SPADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~--~~~ri~~~~~D~~~-----~~-p~~D~v~~  195 (296)
                      +....+++|||+|.|.-++-++=.+|+.+++.+|. ..=+...+   +  ...++.++.+...+     +. ..||+|++
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence            34567999999999999999999999999999997 44333322   2  45778887776543     12 25999999


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHhc
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTYA  275 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~a  275 (296)
                      +.+-    .  ...++.-+...+++   ||++++.-.-.    ..                      ...++.+..+...
T Consensus       148 RAva----~--l~~ll~~~~~~l~~---~g~~i~~KG~~----~~----------------------~El~~a~~~~~~~  192 (239)
T d1xdza_         148 RAVA----R--LSVLSELCLPLVKK---NGLFVALKAAS----AE----------------------EELNAGKKAITTL  192 (239)
T ss_dssp             ECCS----C--HHHHHHHHGGGEEE---EEEEEEEECC-----CH----------------------HHHHHHHHHHHHT
T ss_pred             hhhh----C--HHHHHHHHhhhccc---CCEEEEECCCC----hH----------------------HHHHHHHHHHHHc
Confidence            8653    2  34678888889999   89888766311    00                      0234455667788


Q ss_pred             CCceeEEEEc
Q 022515          276 GFSDYKIIPI  285 (296)
Q Consensus       276 Gf~~~~~~~~  285 (296)
                      |++...+...
T Consensus       193 ~~~~~~v~~~  202 (239)
T d1xdza_         193 GGELENIHSF  202 (239)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            8887666543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=0.00017  Score=61.87  Aligned_cols=120  Identities=16%  Similarity=0.189  Sum_probs=83.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCCCC-------CccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFEAI-------SPADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~~~-------p~~D~v~  194 (296)
                      ..+..+|||+-||+|.++..|++.  ..+++++|. ++.++.|++     ...+++|+.+|..+..       ..+|+++
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi  287 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL  287 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred             cCCCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence            456789999999999999999886  458999999 888888876     5788999999887632       2379988


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY  274 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~  274 (296)
                      +     |-|...+.++++.+.+. +|   .-.++|.-    +     |.   ...                .++. .|.+
T Consensus       288 l-----DPPR~G~~~~~~~l~~~-~~---~~ivYVSC----n-----p~---Tla----------------RDl~-~l~~  329 (358)
T d1uwva2         288 L-----DPARAGAAGVMQQIIKL-EP---IRIVYVSC----N-----PA---TLA----------------RDSE-ALLK  329 (358)
T ss_dssp             E-----CCCTTCCHHHHHHHHHH-CC---SEEEEEES----C-----HH---HHH----------------HHHH-HHHH
T ss_pred             e-----CCCCccHHHHHHHHHHc-CC---CEEEEEeC----C-----HH---HHH----------------HHHH-HHHH
Confidence            8     44544445667777654 55   34444432    1     11   011                1222 3456


Q ss_pred             cCCceeEEEEcCC
Q 022515          275 AGFSDYKIIPILG  287 (296)
Q Consensus       275 aGf~~~~~~~~~~  287 (296)
                      .||++.++.++.-
T Consensus       330 ~gy~l~~i~~~D~  342 (358)
T d1uwva2         330 AGYTIARLAMLDM  342 (358)
T ss_dssp             TTCEEEEEEEECC
T ss_pred             CCCeEeEEEEEec
Confidence            7999999998753

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.64  E-value=8.9e-05  Score=59.59  Aligned_cols=96  Identities=15%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             CCCEEEEecCCchHHHHHHHH----HCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-----CC--ccceeEehh
Q 022515          130 GLNSLVDVGGGIGTAAKAIAK----AFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-----IS--PADAVLLKW  197 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~----~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-----~p--~~D~v~~~~  197 (296)
                      ++.+||+||++.|..+..++.    ..++.+++++|+ +...........||++..+|..+.     ..  .+|+|++-.
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~  159 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  159 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence            367999999999987765543    236789999998 655544433678999999997652     12  378887754


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      . |..  +....-+ .....|+|   ||.++|-|.
T Consensus       160 ~-H~~--~~v~~~~-~~~~lLk~---GG~iIveD~  187 (232)
T d2bm8a1         160 A-HAN--TFNIMKW-AVDHLLEE---GDYFIIEDM  187 (232)
T ss_dssp             S-CSS--HHHHHHH-HHHHTCCT---TCEEEECSC
T ss_pred             C-cch--HHHHHHH-HHhcccCc---CCEEEEEcC
Confidence            3 543  2223334 35678998   777766664

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00028  Score=54.31  Aligned_cols=102  Identities=17%  Similarity=0.265  Sum_probs=69.5

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHC-CCCeEEeccchhHhhccCCCCCCeeEEeccCCC-CC---------
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF-PKLECTCFDLPHVVNGLDSDLANLKYVGGDMFE-AI---------  187 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~D~~~-~~---------  187 (296)
                      ++.+.|. .+++..+|||+||+.|.++..+.+.. +..+++++|+..+-     ..+.+.+..+|+.+ ..         
T Consensus        12 EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          12 EIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----PIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             HHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             HHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----ccCCceEeecccccchhhhhhhhhcc
Confidence            4555555 35788899999999999999888754 55789999983321     45668899999876 21         


Q ss_pred             -CccceeEehhhhccCC----ch-----HHHHHHHHHHHhcccCCCCcEEEE
Q 022515          188 -SPADAVLLKWILHDWN----DE-----ECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       188 -p~~D~v~~~~vlh~~~----d~-----~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                       ..+|+|++-....--.    |+     -+...|.-+.+.|++   ||.+++
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~  134 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVV  134 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEE
Confidence             2489998854432211    11     123556677788999   666554

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.42  E-value=0.00044  Score=55.34  Aligned_cols=106  Identities=11%  Similarity=0.003  Sum_probs=64.1

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccch-hH--hhccCC--CCCCeeEEeccCCC-CCC-ccc
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLP-HV--VNGLDS--DLANLKYVGGDMFE-AIS-PAD  191 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~-~~--~~~a~~--~~~ri~~~~~D~~~-~~p-~~D  191 (296)
                      .+.+.+-  +.+..+|+|+|||.|.++..++...+...+.++++- .-  .....+  ..+-+++..++-.. -.+ .+|
T Consensus        57 ~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D  134 (257)
T d2p41a1          57 WFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD  134 (257)
T ss_dssp             HHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence            4445554  677889999999999999999887665566655551 11  111111  22345666554333 223 489


Q ss_pred             eeEehhhhccCC----chHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          192 AVLLKWILHDWN----DEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       192 ~v~~~~vlh~~~----d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      ++++.-.-+.-+    .+...++|.-+.+.|+|   ||.+++
T Consensus       135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~---gg~Fvv  173 (257)
T d2p41a1         135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCV  173 (257)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEE
T ss_pred             EEEeeCCCCCCCchhhhhhHHHHHHHHHHHccc---CCEEEE
Confidence            999864322111    12345778888899999   886544

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=4.4e-05  Score=62.22  Aligned_cols=67  Identities=12%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC---CCCCeeEEeccCCC-CC
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS---DLANLKYVGGDMFE-AI  187 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~D~~~-~~  187 (296)
                      ...+++...  ..++..||+||||+|.++..|++..  .+++++|+ +..++..++   ..++++++.+|+.+ +.
T Consensus        10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred             HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence            445566555  6678899999999999999999874  57888888 888776654   45789999999998 44

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.34  E-value=0.00037  Score=53.78  Aligned_cols=98  Identities=13%  Similarity=0.119  Sum_probs=66.0

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-------CCCCeeEEeccCCC----C--CCccceeEe
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-------DLANLKYVGGDMFE----A--ISPADAVLL  195 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~D~~~----~--~p~~D~v~~  195 (296)
                      .+.+|||+-||||.++.+.+.+-. .+++.+|. +..+...++       ......+...|..+    .  .+.||+|++
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            346899999999999999998853 38999999 777766554       23456777776543    1  224999988


Q ss_pred             hhhhccCCchHHHHHHHHHHH--hcccCCCCcEEEEEeeeeC
Q 022515          196 KWILHDWNDEECVKILKKCKE--AITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~e~~~~  235 (296)
                      .=-.   .......+|..+..  .|++    +.++++|.-..
T Consensus       122 DPPY---~~~~~~~~l~~l~~~~~L~~----~~liiiE~~~~  156 (183)
T d2ifta1         122 DPPF---HFNLAEQAISLLCENNWLKP----NALIYVETEKD  156 (183)
T ss_dssp             CCCS---SSCHHHHHHHHHHHTTCEEE----EEEEEEEEESS
T ss_pred             chhH---hhhhHHHHHHHHHHhCCcCC----CcEEEEEecCC
Confidence            3111   12234466777654  5888    56777776443

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=97.32  E-value=0.00047  Score=57.38  Aligned_cols=100  Identities=14%  Similarity=0.100  Sum_probs=75.1

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC--------CCCCeeEEeccCCCCCC------cc----
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS--------DLANLKYVGGDMFEAIS------PA----  190 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~D~~~~~p------~~----  190 (296)
                      .+...||.+|||-=.....+ ...++++++-+|.|++++.-++        ...+..++..|+.++++      +|    
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence            45678999999998887665 3356889999999999875433        35667888888876421      23    


Q ss_pred             -ceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          191 -DAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       191 -D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                       -++++-.++++++.+++.++|+.+.+...|   |+. +++|..
T Consensus       167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~-l~~d~~  206 (297)
T d2uyoa1         167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSR-IAVETS  206 (297)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCE-EEEECC
T ss_pred             CEEEEEccccccCCHHHHHHHHHHHHHhCCC---CCE-EEEEec
Confidence             366777789999999999999999999988   666 455544

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.86  E-value=0.00081  Score=58.86  Aligned_cols=110  Identities=14%  Similarity=0.078  Sum_probs=74.3

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHCC-------------CCeEEeccc-hhHhhccCC-------CCCC
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFP-------------KLECTCFDL-PHVVNGLDS-------DLAN  175 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~-------~~~r  175 (296)
                      +..+++.+.  .....+|+|-.||+|.++.+..+...             .....++|. +.+...|+.       ....
T Consensus       151 v~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~  228 (425)
T d2okca1         151 IQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR  228 (425)
T ss_dssp             HHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             hHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence            444455444  34568999999999999988877532             234788998 777766643       2345


Q ss_pred             eeEEeccCCCCCC--ccceeEehhhhcc--CC-------------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          176 LKYVGGDMFEAIS--PADAVLLKWILHD--WN-------------DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       176 i~~~~~D~~~~~p--~~D~v~~~~vlh~--~~-------------d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      ..+..+|.+...+  .||+|+..=-...  +.             ...-..++.++.+.|++   ||++.++-
T Consensus       229 ~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI~  298 (425)
T d2okca1         229 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVVL  298 (425)
T ss_dssp             CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEEe
Confidence            6778889887333  5999988433211  10             01124589999999999   89887764

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.024  Score=47.26  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=83.5

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccchhHhhccCC--------------------------CCCCeeEEeccC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDLPHVVNGLDS--------------------------DLANLKYVGGDM  183 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------------------------~~~ri~~~~~D~  183 (296)
                      +...|+-+|||.=.....+...+|+++++-+|.|++++.-++                          ..++..++..|+
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL  175 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  175 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence            446899999999999989988999999999999988763211                          257889999999


Q ss_pred             CC-CC----------Cc-cceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCC
Q 022515          184 FE-AI----------SP-ADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENK  237 (296)
Q Consensus       184 ~~-~~----------p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~  237 (296)
                      .+ ..          ++ .-++++--+|.+++.+++.++++.+.+..+.    +.+++.|.+.+..
T Consensus       176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~YE~i~~~~  237 (328)
T d1rjda_         176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISYDPIGGSQ  237 (328)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEEEECCCCS
T ss_pred             CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEeccCCCCC
Confidence            87 21          11 3478888899999999999999999998874    8899999886543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.18  E-value=0.0031  Score=53.97  Aligned_cols=94  Identities=11%  Similarity=0.034  Sum_probs=69.4

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------------CCCCeeEEeccCCC---
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------------DLANLKYVGGDMFE---  185 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------------~~~ri~~~~~D~~~---  185 (296)
                      ++.+|||..||+|..++..+...+..+++..|+ +..++.+++                    ....+.+...|...   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            457999999999999999888877778999999 888877765                    12335666666543   


Q ss_pred             CCC-ccceeEehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          186 AIS-PADAVLLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       186 ~~p-~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ... .||+|.+-=    +..  ...+|..+.++++.   ||.|.|+-+
T Consensus       125 ~~~~~fDvIDiDP----fGs--~~pfldsAi~a~~~---~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAKR---RGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC----SSC--CHHHHHHHHHHEEE---EEEEEEEEC
T ss_pred             hhcCcCCcccCCC----CCC--cHHHHHHHHHHhcc---CCEEEEEec
Confidence            123 499988842    222  34789999999998   777777754

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.004  Score=52.18  Aligned_cols=56  Identities=11%  Similarity=0.195  Sum_probs=44.9

Q ss_pred             CCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--CCCCeeEEeccCCC
Q 022515          130 GLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--DLANLKYVGGDMFE  185 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~D~~~  185 (296)
                      ...+|||||.|.|.++..|+++..--++++++. +..++..++  ..++++++.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            456899999999999999998742248999998 776665544  56889999999875

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.07  E-value=0.022  Score=47.25  Aligned_cols=103  Identities=13%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCC-CCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C-C-CccceeEe--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFP-KLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A-I-SPADAVLL--  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~-~-p~~D~v~~--  195 (296)
                      ..++.+|||+.+|.|.=+.+++.... ...++..|. +.-+...++     ...++.+...|... + . ..||.|++  
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence            46778999999999999988888654 557888998 655544433     45667777777765 2 2 25898887  


Q ss_pred             ----hhhh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          196 ----KWIL-------HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       196 ----~~vl-------h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                          ..++       ..+..++       -.++|+++.+.+||   ||+|+-....
T Consensus       194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYsTCS  246 (313)
T d1ixka_         194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYSTCS  246 (313)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEESC
T ss_pred             ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEeecc
Confidence                1112       1222221       25789999999999   8876554433

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.78  E-value=0.13  Score=43.08  Aligned_cols=148  Identities=16%  Similarity=0.167  Sum_probs=88.4

Q ss_pred             CCCEEEEecCCchHHHH-------HHHH-H--------CCCCeEEeccchhH-----hhccCC---CCC--CeeEEeccC
Q 022515          130 GLNSLVDVGGGIGTAAK-------AIAK-A--------FPKLECTCFDLPHV-----VNGLDS---DLA--NLKYVGGDM  183 (296)
Q Consensus       130 ~~~~vLDvGgG~G~~~~-------~l~~-~--------~p~~~~~~~D~~~~-----~~~a~~---~~~--ri~~~~~D~  183 (296)
                      +.-+|.|+||.+|..+.       ...+ +        -|..++..-|+|.-     ......   ...  -+.-++|.|
T Consensus        51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF  130 (359)
T d1m6ex_          51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence            44689999999998773       2222 1        25667888888531     111111   111  144478999


Q ss_pred             CC-CCC--ccceeEehhhhccCCc-------------------h------------HHHHHHHHHHHhcccCCCCcEEEE
Q 022515          184 FE-AIS--PADAVLLKWILHDWND-------------------E------------ECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       184 ~~-~~p--~~D~v~~~~vlh~~~d-------------------~------------~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      +. -+|  ..+++++++.||..+.                   +            +-..+|+.=++=|.|   ||++++
T Consensus       131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mvl  207 (359)
T d1m6ex_         131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL  207 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred             hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEEE
Confidence            99 466  3899999999997642                   1            223467766677898   999999


Q ss_pred             EeeeeCCCCCCCchhhhhhhhhhh-----hhhhcC-------------ccccCHHHHHHHHHhcC-CceeEE
Q 022515          230 IDMIRENKKGDDKSIETQLFFDML-----MMVLLT-------------GTERDEKEWTKLFTYAG-FSDYKI  282 (296)
Q Consensus       230 ~e~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------------g~~rt~~e~~~ll~~aG-f~~~~~  282 (296)
                      +-...++.....  ......+++.     -|+.-|             --.++.+|+++.+++.| |++.++
T Consensus       208 ~~~gr~~~~~~~--~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~  277 (359)
T d1m6ex_         208 TILGRRSEDRAS--TECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             EEEECSSSSSSS--TTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             EEeccCCCCCCC--CccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence            887766543221  0111111111     111111             12358999999999876 555444

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.28  E-value=0.2  Score=36.89  Aligned_cols=94  Identities=18%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-----------CC-cccee
Q 022515          128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-----------IS-PADAV  193 (296)
Q Consensus       128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-----------~p-~~D~v  193 (296)
                      .+++.+||-+||| .|.++..+++.. +.+++++|. ++-++.+++......+..-+...+           .+ ++|++
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence            5677899999977 677778788776 679999998 777777775333333322111111           12 37877


Q ss_pred             EehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          194 LLKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       194 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      +-.-     ..+   ..+..+.+.++|   +|+++++-..
T Consensus       103 id~~-----g~~---~~~~~a~~~~~~---~G~iv~~G~~  131 (170)
T d1e3ja2         103 IDCS-----GNE---KCITIGINITRT---GGTLMLVGMG  131 (170)
T ss_dssp             EECS-----CCH---HHHHHHHHHSCT---TCEEEECSCC
T ss_pred             eecC-----CCh---HHHHHHHHHHhc---CCceEEEecC
Confidence            6532     222   457788889999   9999988743

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.032  Score=45.55  Aligned_cols=103  Identities=13%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--CC-ccceeEe--
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--IS-PADAVLL--  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~p-~~D~v~~--  195 (296)
                      ..++.+|||+.+|.|.=+.+++....+.+++..|. +.=+...++     ....+..+..|... .  .+ .||.|++  
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence            46778999999999999999999888888999997 544433322     23344445444443 1  22 4899887  


Q ss_pred             ----hhhh-------ccCCchH-------HHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          196 ----KWIL-------HDWNDEE-------CVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       196 ----~~vl-------h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                          ..++       ..|...+       -.++|+++.+.|+|   ||+|+-....
T Consensus       180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYsTCS  232 (284)
T d1sqga2         180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYATCS  232 (284)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEEESC
T ss_pred             cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEeeec
Confidence                2222       2333222       25789999999999   7766655443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.15  E-value=0.046  Score=40.57  Aligned_cols=82  Identities=20%  Similarity=0.182  Sum_probs=56.7

Q ss_pred             EEEEecCCc-h-HHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCC-CCCccceeEehhhhccCCchHHH
Q 022515          133 SLVDVGGGI-G-TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFE-AISPADAVLLKWILHDWNDEECV  208 (296)
Q Consensus       133 ~vLDvGgG~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~-~~p~~D~v~~~~vlh~~~d~~~~  208 (296)
                      +|+=||||. | .++..|.+..+..+++++|. ++.++.+++ ...+....-+... ....+|+|++.     .|.....
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~   76 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-LGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR   76 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-TTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-hhcchhhhhhhhhhhcccccccccc-----CCchhhh
Confidence            577899985 3 45566777777789999999 888888873 2223333333332 22357998884     3666778


Q ss_pred             HHHHHHHHhccc
Q 022515          209 KILKKCKEAITS  220 (296)
Q Consensus       209 ~iL~~~~~aL~p  220 (296)
                      +++.++.+.+++
T Consensus        77 ~vl~~l~~~~~~   88 (171)
T d2g5ca2          77 EIAKKLSYILSE   88 (171)
T ss_dssp             HHHHHHHHHSCT
T ss_pred             hhhhhhhccccc
Confidence            899999999987

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.017  Score=43.22  Aligned_cols=93  Identities=17%  Similarity=0.118  Sum_probs=59.2

Q ss_pred             cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccC---CCCC-CccceeEehh-hh
Q 022515          128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDM---FEAI-SPADAVLLKW-IL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~---~~~~-p~~D~v~~~~-vl  199 (296)
                      .+++.+||-+|+| .|.++..+++.. +.+++++|. ++-++.+++ ..+. .+...+-   .+.. ..+|+++-.- ..
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~-~i~~~~~~~~~~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADH-YIATLEEGDWGEKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSE-EEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcE-EeeccchHHHHHhhhcccceEEEEecCC
Confidence            6778899999987 778888887765 789999998 777777765 2232 1211111   1112 2488776531 11


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      +..       .+....+.++|   +|+++++-.
T Consensus       103 ~~~-------~~~~~~~~l~~---~G~iv~~G~  125 (168)
T d1piwa2         103 TDI-------DFNIMPKAMKV---GGRIVSISI  125 (168)
T ss_dssp             TTC-------CTTTGGGGEEE---EEEEEECCC
T ss_pred             ccc-------hHHHHHHHhhc---cceEEEecc
Confidence            111       14457788999   899988763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.67  E-value=0.0074  Score=46.57  Aligned_cols=106  Identities=17%  Similarity=0.101  Sum_probs=67.1

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeE--EeccCCCC-----CC-ccceeEehh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKY--VGGDMFEA-----IS-PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~--~~~D~~~~-----~p-~~D~v~~~~  197 (296)
                      .+++.+||-+|||. |.++..+++.....+++++|. ++-++.|++......+  ...|+.+.     .+ ++|+++-.-
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v  102 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV  102 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence            67889999999998 667788888877778999998 8888887752221111  11122111     12 478877421


Q ss_pred             h------hc-cCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCC
Q 022515          198 I------LH-DWNDEECVKILKKCKEAITSDGKKGKVIIIDMIREN  236 (296)
Q Consensus       198 v------lh-~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~  236 (296)
                      -      .| ..........|+.+.++++|   ||++.++-...++
T Consensus       103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~G~~~~~  145 (195)
T d1kola2         103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIPGLYVTE  145 (195)
T ss_dssp             CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEECSCCCSC
T ss_pred             cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEeeecCCC
Confidence            1      00 01111123679999999999   9999988754433

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.026  Score=50.29  Aligned_cols=110  Identities=11%  Similarity=0.034  Sum_probs=67.2

Q ss_pred             hHHHHHhcccccCCCCEEEEecCCchHHHHHHHHHC----C--------------CCeEEeccc-hhHhhccCC------
Q 022515          117 TSVMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAF----P--------------KLECTCFDL-PHVVNGLDS------  171 (296)
Q Consensus       117 ~~~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~----p--------------~~~~~~~D~-~~~~~~a~~------  171 (296)
                      +..+++.+.  .....+|+|-.||+|.++....+..    .              .....++|+ +.+...|+-      
T Consensus       153 v~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~  230 (524)
T d2ar0a1         153 IKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD  230 (524)
T ss_dssp             HHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred             hHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence            344444444  3456799999999999998766532    1              125788898 777665542      


Q ss_pred             C----CCCeeEEeccCCC-C---CCccceeEehhhh--ccCC----------chHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          172 D----LANLKYVGGDMFE-A---ISPADAVLLKWIL--HDWN----------DEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       172 ~----~~ri~~~~~D~~~-~---~p~~D~v~~~~vl--h~~~----------d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .    ...-.+..++.+. +   .+.||+|+.+=-.  ..+.          ...-..++.++.+.|+|   ||++.++-
T Consensus       231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---gGr~aiIl  307 (524)
T d2ar0a1         231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVVV  307 (524)
T ss_dssp             CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEEE
T ss_pred             ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc---cCcEEEEE
Confidence            0    1122345566655 2   2358988873211  0000          11123589999999999   99988765

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.84  E-value=0.071  Score=39.30  Aligned_cols=84  Identities=11%  Similarity=0.037  Sum_probs=54.6

Q ss_pred             EEEEecCC--chHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCCCCccceeEehhhhccCCchHHHH
Q 022515          133 SLVDVGGG--IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEAISPADAVLLKWILHDWNDEECVK  209 (296)
Q Consensus       133 ~vLDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~  209 (296)
                      +|.=||+|  -+.++..|.++  +.+++++|. ++.++.+++ ...+.. ..+..+...++|+|++.     .|.....+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~-~~~~~~-~~~~~~~~~~~DiIila-----vp~~~~~~   72 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE-RQLVDE-AGQDLSLLQTAKIIFLC-----TPIQLILP   72 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH-TTSCSE-EESCGGGGTTCSEEEEC-----SCHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHH-hhccce-eeeeccccccccccccc-----CcHhhhhh
Confidence            56678877  34455555554  678999999 887777663 111211 12222334568999873     36777789


Q ss_pred             HHHHHHHhcccCCCCcEEEE
Q 022515          210 ILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       210 iL~~~~~aL~p~~~gG~lli  229 (296)
                      +++++...+++    +.+++
T Consensus        73 vl~~l~~~l~~----~~iv~   88 (165)
T d2f1ka2          73 TLEKLIPHLSP----TAIVT   88 (165)
T ss_dssp             HHHHHGGGSCT----TCEEE
T ss_pred             hhhhhhhhccc----cccee
Confidence            99999999987    55554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.74  E-value=0.12  Score=38.77  Aligned_cols=95  Identities=18%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec--cCCC--------CCC-ccceeE
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG--DMFE--------AIS-PADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--D~~~--------~~p-~~D~v~  194 (296)
                      .+++.+||-+|+|. |.++..+++.+-..+++++|. ++-.+.+++......+-..  |..+        ..+ ++|+|+
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence            56778999999874 888888998874347999998 8777777653222222111  1111        012 488877


Q ss_pred             ehhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeee
Q 022515          195 LKWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMI  233 (296)
Q Consensus       195 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~  233 (296)
                      -.-     ..+   ..++.+.+.++|   ||+++++-..
T Consensus       106 d~v-----G~~---~~~~~a~~~l~~---~G~iv~~G~~  133 (182)
T d1vj0a2         106 EAT-----GDS---RALLEGSELLRR---GGFYSVAGVA  133 (182)
T ss_dssp             ECS-----SCT---THHHHHHHHEEE---EEEEEECCCC
T ss_pred             ecC-----Cch---hHHHHHHHHhcC---CCEEEEEeec
Confidence            431     111   347788899999   9999887743

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.63  E-value=0.041  Score=41.22  Aligned_cols=94  Identities=19%  Similarity=0.175  Sum_probs=59.1

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC----CC-ccceeEehhh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA----IS-PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~----~p-~~D~v~~~~v  198 (296)
                      .+++.+||=+|||. |.++..+++.....++++.|. +.-++.+++ ..+.+ .....|..+.    .+ ++|+++-.- 
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~-  104 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST-  104 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS-
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC-
Confidence            67788999999765 456677777776667788887 777777765 22221 1111122111    12 488877532 


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                          ..   ...++.+.+.++|   +|+++++-.
T Consensus       105 ----G~---~~~~~~~~~~~~~---~G~i~~~G~  128 (174)
T d1f8fa2         105 ----GS---PEILKQGVDALGI---LGKIAVVGA  128 (174)
T ss_dssp             ----CC---HHHHHHHHHTEEE---EEEEEECCC
T ss_pred             ----Cc---HHHHHHHHhcccC---ceEEEEEee
Confidence                22   2467888899999   899988754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.63  E-value=0.14  Score=38.14  Aligned_cols=94  Identities=14%  Similarity=0.021  Sum_probs=62.3

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCC-eeEEeccCC-CC------CCccceeEeh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LAN-LKYVGGDMF-EA------ISPADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~r-i~~~~~D~~-~~------~p~~D~v~~~  196 (296)
                      .+++.+||=+|||. |.++..+++..-..++++.|. ++=.+.+++. .+. ++....|-. ..      ..++|+++-.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            67788999999987 888899999886567888998 7667777652 222 111111211 00      1247888653


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCC-cEEEEEee
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKK-GKVIIIDM  232 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~e~  232 (296)
                      -     ..+   ..+....+.++|   | |+++++-.
T Consensus       106 ~-----G~~---~~~~~a~~~~~~---g~G~~v~vG~  131 (174)
T d1e3ia2         106 A-----GTA---QTLKAAVDCTVL---GWGSCTVVGA  131 (174)
T ss_dssp             S-----CCH---HHHHHHHHTBCT---TTCEEEECCC
T ss_pred             c-----ccc---hHHHHHHHHhhc---CCeEEEecCC
Confidence            2     222   468889999998   6 89888764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.40  E-value=0.038  Score=41.09  Aligned_cols=93  Identities=28%  Similarity=0.360  Sum_probs=60.5

Q ss_pred             cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec---cCCCC-----CC-ccceeEe
Q 022515          128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG---DMFEA-----IS-PADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~---D~~~~-----~p-~~D~v~~  195 (296)
                      ..++.+||=+||  |.|.++..+++.....++++.|. ++-.+.+++.... .++..   |+.+.     .+ .+|+++-
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~vid  103 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITESKGVDAVID  103 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence            677889999995  46777787888776678999998 7666666642111 12222   22111     12 3888776


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      ..     ..+   ..++.+.++++|   ||+++++-.
T Consensus       104 ~~-----g~~---~~~~~a~~~l~~---~G~iv~~G~  129 (170)
T d1jvba2         104 LN-----NSE---KTLSVYPKALAK---QGKYVMVGL  129 (170)
T ss_dssp             SC-----CCH---HHHTTGGGGEEE---EEEEEECCS
T ss_pred             cc-----ccc---hHHHhhhhhccc---CCEEEEecc
Confidence            32     222   457778889999   899988864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.29  E-value=0.034  Score=41.39  Aligned_cols=89  Identities=13%  Similarity=0.141  Sum_probs=58.0

Q ss_pred             cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeEEeccCCC------CCCccceeEehhh
Q 022515          128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKYVGGDMFE------AISPADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~D~~~------~~p~~D~v~~~~v  198 (296)
                      .+++.+||=+|+| .|.++..+++.. +.+.+++|. ++-.+.+++ ..+.  ++  |..+      ...++|+++-.- 
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~--~i--~~~~~~~~~~~~~~~D~vid~~-  101 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADE--VV--NSRNADEMAAHLKSFDFILNTV-  101 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSE--EE--ETTCHHHHHTTTTCEEEEEECC-
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcE--EE--ECchhhHHHHhcCCCceeeeee-
Confidence            6778888889975 478888888886 677788887 665666654 2221  12  2222      122488876532 


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                          ..+   ..++...+.++|   +|+++++-.
T Consensus       102 ----g~~---~~~~~~~~~l~~---~G~iv~~G~  125 (168)
T d1uufa2         102 ----AAP---HNLDDFTTLLKR---DGTMTLVGA  125 (168)
T ss_dssp             ----SSC---CCHHHHHTTEEE---EEEEEECCC
T ss_pred             ----ecc---hhHHHHHHHHhc---CCEEEEecc
Confidence                111   236677788999   899998754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.1  Score=42.59  Aligned_cols=68  Identities=13%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             cCCCCEEEEecCCchHHHHHHHHH-CCCCeEEeccc-hhHhhccCC-----CCCCeeEEeccCCC-C--C---CccceeE
Q 022515          128 FEGLNSLVDVGGGIGTAAKAIAKA-FPKLECTCFDL-PHVVNGLDS-----DLANLKYVGGDMFE-A--I---SPADAVL  194 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~D~~~-~--~---p~~D~v~  194 (296)
                      ..++.+|||+.+|.|.=+.+++.. .+..+++.+|. +.=+...++     ...++.+...|+.. .  .   ..||.|+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence            456789999999999999888875 45678899998 655554433     46778999888875 2  1   2489887


Q ss_pred             e
Q 022515          195 L  195 (296)
Q Consensus       195 ~  195 (296)
                      +
T Consensus       172 ~  172 (293)
T d2b9ea1         172 L  172 (293)
T ss_dssp             E
T ss_pred             e
Confidence            7

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.05  E-value=0.016  Score=37.12  Aligned_cols=41  Identities=15%  Similarity=0.208  Sum_probs=33.6

Q ss_pred             cCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           38 LGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        38 l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +.|.+.+++.++|+|+.|||+.+|+++..+.|.+......|
T Consensus         8 l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g   48 (75)
T d1mkma1           8 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG   48 (75)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            45677787656799999999999999999999887766544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.39  E-value=0.48  Score=34.89  Aligned_cols=97  Identities=11%  Similarity=-0.085  Sum_probs=58.0

Q ss_pred             cCCCCEEEEecCC-chHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC--------C-CccceeEeh
Q 022515          128 FEGLNSLVDVGGG-IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA--------I-SPADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~--------~-p~~D~v~~~  196 (296)
                      .+++.+||=+|+| .|..+..+++..-..++++.|. ++-.+.+++....-.+...+-.+.        . .++|+++-.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            6788899999875 4556677788877779999998 776776664222111211121111        1 248988764


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      .-.     +   ..++.+...+++   ||+++++-...+
T Consensus       106 ~G~-----~---~~~~~a~~~~~~---~~g~~~~~~~~~  133 (176)
T d2jhfa2         106 IGR-----L---DTMVTALSCCQE---AYGVSVIVGVPP  133 (176)
T ss_dssp             SCC-----H---HHHHHHHHHBCT---TTCEEEECSCCC
T ss_pred             CCc-----h---hHHHHHHHHHhc---CCcceEEecCCC
Confidence            322     2   346667777887   655555544433

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=92.37  E-value=0.034  Score=44.33  Aligned_cols=77  Identities=19%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             HHHHhcccccCCCCEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC--------------CCCCeeEEeccC
Q 022515          119 VMIHKCKDVFEGLNSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS--------------DLANLKYVGGDM  183 (296)
Q Consensus       119 ~~~~~~~~~~~~~~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~D~  183 (296)
                      .+.++.........+|||.=||.|..+..++..  +.+++.++. |.+....+.              ...|++++.+|.
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            455555411222348999999999999999988  679999998 654432221              135899999986


Q ss_pred             CC---CC-CccceeEehh
Q 022515          184 FE---AI-SPADAVLLKW  197 (296)
Q Consensus       184 ~~---~~-p~~D~v~~~~  197 (296)
                      .+   .. +.+|+|++-=
T Consensus       155 ~~~L~~~~~~~DvIYlDP  172 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDP  172 (250)
T ss_dssp             HHHSTTCSSCCSEEEECC
T ss_pred             HHHHhccCCCCCEEEECC
Confidence            54   22 3488888743

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.07  Score=39.77  Aligned_cols=91  Identities=18%  Similarity=0.144  Sum_probs=60.3

Q ss_pred             cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC-----CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA-----IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~-----~p-~~D~v~~~  196 (296)
                      ++++.+||-.|+  |.|..++.+++.. ++++++.+. ++-.+.+++ ..+.+ +....|+.+.     -+ ++|+++-.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~  104 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM  104 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence            667889999984  7888899999887 678888776 666666654 22322 1112222221     12 48888763


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      .      .   ...+.+..++++|   +|+++.+-
T Consensus       105 ~------g---~~~~~~~~~~l~~---~G~iv~~G  127 (174)
T d1yb5a2         105 L------A---NVNLSKDLSLLSH---GGRVIVVG  127 (174)
T ss_dssp             C------H---HHHHHHHHHHEEE---EEEEEECC
T ss_pred             c------c---HHHHHHHHhccCC---CCEEEEEe
Confidence            2      1   1357888899999   99998874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.87  E-value=0.038  Score=41.48  Aligned_cols=94  Identities=20%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-eeEEeccCCCC-----CC-ccceeEehh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-LKYVGGDMFEA-----IS-PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~D~~~~-----~p-~~D~v~~~~  197 (296)
                      .+++.+||=+|||. |.++..+++..--.+++++|. ++-.+.+++ ..+. +.+...+..+.     .+ ++|+++-.-
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            66778888899887 888888888764447999998 776777765 2221 11111122111     11 388876532


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                           ..+   ..+.++.+.++|   +|+++++-.
T Consensus       105 -----g~~---~~~~~a~~~~~~---~G~iv~~G~  128 (174)
T d1jqba2         105 -----GGS---ETLSQAVKMVKP---GGIISNINY  128 (174)
T ss_dssp             -----SCT---THHHHHHHHEEE---EEEEEECCC
T ss_pred             -----CCH---HHHHHHHHHHhc---CCEEEEEee
Confidence                 111   357788889999   899988764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.82  E-value=0.3  Score=36.30  Aligned_cols=135  Identities=11%  Similarity=-0.028  Sum_probs=72.0

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CC-CeeEEeccCCC-C-----CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LA-NLKYVGGDMFE-A-----IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~-ri~~~~~D~~~-~-----~p-~~D~v~~~  196 (296)
                      .+++.+||=+|+|. |.++..+++.+-..+++++|. ++-++.|++. .+ -|+....|... .     .+ ++|+++-.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            67788999999765 566677777775578999999 8888888862 22 22222222211 0     12 47877663


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCCCCCchhhhhhhhhhhhhhhcCccccCHHHHHHHHHh
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKKGDDKSIETQLFFDMLMMVLLTGTERDEKEWTKLFTY  274 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rt~~e~~~ll~~  274 (296)
                      .     ...   ..+......+.+  .+|+++++-.........  .................|..++..++.++++.
T Consensus       107 ~-----g~~---~~~~~a~~~~~~--~~G~~v~vG~~~~~~~~~--~~~~~~~~~~~i~Gs~~G~~~~~~dip~li~~  172 (176)
T d1d1ta2         107 I-----GHL---ETMIDALASCHM--NYGTSVVVGVPPSAKMLT--YDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTE  172 (176)
T ss_dssp             S-----CCH---HHHHHHHTTSCT--TTCEEEECSCCCTTCCEE--ECTHHHHTTCEEEECSGGGCCHHHHHHHHHHH
T ss_pred             C-----Cch---HHHHHHHHHhhc--CCeEEEEEEccccccccC--CCHHHHhCCCEEEEEEEeCCCcHHHHHHHHHH
Confidence            2     221   334455555544  158888776443322211  10111111122211223455567777766654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.34  E-value=0.054  Score=40.04  Aligned_cols=92  Identities=20%  Similarity=0.150  Sum_probs=56.3

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec--cCCCC----CCccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG--DMFEA----ISPADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--D~~~~----~p~~D~v~~~~vl  199 (296)
                      .+++.+||=+|+|. |.++..+++.. +.+++++|. ++-++.+++......+...  |..+.    ..++|.++.... 
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~-  102 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV-  102 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence            56778888899764 66667777776 689999999 7777777652221111111  11111    123444433211 


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                          .   ...+..+.+.|+|   ||+++++-
T Consensus       103 ----~---~~~~~~~~~~l~~---~G~iv~~G  124 (166)
T d1llua2         103 ----S---NSAFGQAIGMARR---GGTIALVG  124 (166)
T ss_dssp             ----C---HHHHHHHHTTEEE---EEEEEECC
T ss_pred             ----c---chHHHHHHHHhcC---CcEEEEEE
Confidence                1   1457788899999   99998875

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.12  E-value=0.049  Score=41.40  Aligned_cols=49  Identities=14%  Similarity=0.149  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           28 NSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        28 ~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      ..++|.--.++.|+.+|.+  +|.|+.|||+.+|+++..+.+||......|
T Consensus        12 ~~~~l~~p~R~~Il~~L~~--~~~s~~ela~~lg~s~~~v~~hl~~L~~~g   60 (190)
T d1ulya_          12 VIKVMLEDTRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAG   60 (190)
T ss_dssp             HHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            3466777788899999976  899999999999999999999998876654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.64  Score=33.97  Aligned_cols=96  Identities=14%  Similarity=0.113  Sum_probs=60.9

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEec-cCCC-------CCC-ccceeEe
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVGG-DMFE-------AIS-PADAVLL  195 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~-D~~~-------~~p-~~D~v~~  195 (296)
                      .+++.+|+=+|+|. |.++..+++.....++++.|. +.-++.|++. .+.+..... |..+       ..+ ++|+++-
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence            56778999999876 455566666654448999998 8888888752 332222111 1110       012 4788776


Q ss_pred             hhhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeee
Q 022515          196 KWILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIR  234 (296)
Q Consensus       196 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~  234 (296)
                      .-     ..+   ..++.+.+.+++   ||+++++-...
T Consensus       104 ~~-----G~~---~~~~~a~~~~~~---gG~iv~~G~~~  131 (171)
T d1pl8a2         104 CT-----GAE---ASIQAGIYATRS---GGTLVLVGLGS  131 (171)
T ss_dssp             CS-----CCH---HHHHHHHHHSCT---TCEEEECSCCC
T ss_pred             cc-----CCc---hhHHHHHHHhcC---CCEEEEEecCC
Confidence            32     222   468888899999   99999887543

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=90.06  E-value=0.05  Score=36.66  Aligned_cols=48  Identities=17%  Similarity=0.236  Sum_probs=40.7

Q ss_pred             HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .++|.--.++.|+..|.+  ++.++.|||+.+|+++..+..+|...-..|
T Consensus        17 ~kaL~~p~Rl~Il~~L~~--~~~~v~ela~~l~is~stvS~HL~~L~~ag   64 (98)
T d1r1ta_          17 FAVLADPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLR   64 (98)
T ss_dssp             HHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            356677788899999986  799999999999999999999988766554

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=89.60  E-value=0.064  Score=33.68  Aligned_cols=42  Identities=12%  Similarity=0.159  Sum_probs=34.7

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      -+..|+.+|... +++|..|||+.+|+++..+.+.+.+....|
T Consensus         7 N~~~Il~~l~~~-g~~sr~eLa~~~glS~~Tv~~~l~~L~~~G   48 (71)
T d1z05a1           7 NAGRVYKLIDQK-GPISRIDLSKESELAPASITKITRELIDAH   48 (71)
T ss_dssp             HHHHHHHHHHHH-CSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            344577778764 799999999999999999999888887765

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.53  E-value=0.043  Score=36.70  Aligned_cols=48  Identities=15%  Similarity=0.142  Sum_probs=40.5

Q ss_pred             HHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           29 SMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        29 ~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .++|.--.++.|+..|.+  ++.++.|||+.+|+++..+.++|...-..|
T Consensus        12 fkaL~d~~Rl~Il~~L~~--~~~~v~el~~~l~~s~~~vS~HL~~L~~~g   59 (94)
T d1r1ua_          12 FKALGDYNRIRIMELLSV--SEASVGHISHQLNLSQSNVSHQLKLLKSVH   59 (94)
T ss_dssp             HHHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHc--CCccHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            456666788889999987  899999999999999999999988766544

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.44  E-value=0.06  Score=32.66  Aligned_cols=41  Identities=17%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +..|...|.++ +..|..+||+++|+++..+.+++..+..+|
T Consensus         5 D~kIl~~L~~n-~r~s~~~lA~~~gls~~~v~~Ri~~L~~~g   45 (60)
T d1i1ga1           5 DKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEKG   45 (60)
T ss_dssp             HHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            44567778764 789999999999999999998888777655

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.42  E-value=0.066  Score=32.43  Aligned_cols=42  Identities=17%  Similarity=0.193  Sum_probs=35.0

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      ++..|...|.++ +..|..|||+++|+++..+.+++..+..+|
T Consensus         4 ~D~~Il~~L~~n-~r~s~~eiA~~l~ls~~~v~~Ri~~L~~~g   45 (60)
T d2cyya1           4 IDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRESG   45 (60)
T ss_dssp             HHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            455677888874 789999999999999999998888877665

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=89.40  E-value=0.073  Score=32.60  Aligned_cols=41  Identities=17%  Similarity=0.283  Sum_probs=34.7

Q ss_pred             HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +..|.+.|.++ +..|..+||+.+|+++..+.+++..+..+|
T Consensus         7 D~~IL~~L~~n-~r~s~~~iA~~lgis~~tv~~Ri~~L~~~g   47 (63)
T d2cfxa1           7 DLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESFG   47 (63)
T ss_dssp             HHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            45577788774 789999999999999999999888887765

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.35  E-value=0.12  Score=38.02  Aligned_cols=93  Identities=16%  Similarity=0.114  Sum_probs=54.9

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec--cCCCC----CCccceeEehhhh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG--DMFEA----ISPADAVLLKWIL  199 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--D~~~~----~p~~D~v~~~~vl  199 (296)
                      .+++.+||=.|+|+ |..+..+++. .+.++++.|. ++-++.+++.....-+...  |+.+.    .++.|.++...+ 
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-  102 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-  102 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-
T ss_pred             CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-
Confidence            56778888899765 4555555655 4678999997 7777777642211111111  11111    123444443221 


Q ss_pred             ccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          200 HDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       200 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                          .   ...+..+.++++|   ||+++++-.
T Consensus       103 ----~---~~~~~~a~~~l~~---~G~i~~~g~  125 (168)
T d1rjwa2         103 ----S---KPAFQSAYNSIRR---GGACVLVGL  125 (168)
T ss_dssp             ----C---HHHHHHHHHHEEE---EEEEEECCC
T ss_pred             ----C---HHHHHHHHHHhcc---CCceEeccc
Confidence                1   2458889999999   899888753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.11  E-value=0.81  Score=33.40  Aligned_cols=94  Identities=13%  Similarity=0.040  Sum_probs=57.5

Q ss_pred             cCCCCEEEEecC-CchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-eeEEe-ccCCC-----CCC-ccceeEeh
Q 022515          128 FEGLNSLVDVGG-GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-LKYVG-GDMFE-----AIS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGg-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~-~D~~~-----~~p-~~D~v~~~  196 (296)
                      .+++.+||=+|| |.|.++..+++..-..++++.|. ++-.+.+++ ..+. |.+.. .+...     ..+ ++|+++-.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~  105 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence            677889888875 45677777888775568888888 777777765 2222 11111 01110     012 48888764


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      -     ..+   ..++.+...+++   ||+++++-.
T Consensus       106 ~-----G~~---~~~~~~~~~~~~---g~~~~~v~~  130 (176)
T d2fzwa2         106 I-----GNV---KVMRAALEACHK---GWGVSVVVG  130 (176)
T ss_dssp             S-----CCH---HHHHHHHHTBCT---TTCEEEECS
T ss_pred             C-----CCH---HHHHHHHHhhcC---CceeEEEEe
Confidence            2     222   457788888888   777766543

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.71  E-value=0.2  Score=34.17  Aligned_cols=51  Identities=10%  Similarity=0.175  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           27 INSMTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        27 ~~~~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      -..++|.--.++.|+..|... ++.++.|||+.+|+++..+.++|...-..|
T Consensus        23 ~~~kaLadp~Rl~Il~~L~~~-~~~~v~ela~~l~~s~s~vS~HL~~L~~aG   73 (108)
T d1u2wa1          23 QILKAIADENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLYKQG   73 (108)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHhC-CCccHHHHHHHHccChhHHHHHHHHHHHCC
Confidence            346678888999999998642 789999999999999999999987765544

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=88.64  E-value=0.074  Score=32.57  Aligned_cols=41  Identities=15%  Similarity=0.246  Sum_probs=34.5

Q ss_pred             HcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           37 QLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        37 ~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      +..|...|.++ +..|..|||+++|+++..+.+++..+..+|
T Consensus         7 D~~IL~~L~~~-~r~s~~eiA~~l~ls~~~v~~Ri~rL~~~G   47 (63)
T d2cg4a1           7 DRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAG   47 (63)
T ss_dssp             HHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            45577788874 789999999999999999999888887765

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.97  E-value=0.12  Score=31.41  Aligned_cols=38  Identities=18%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             CcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           39 GIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        39 ~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .|+..|.+  +|+|-.|||+.+|++...+.+.+.+++..|
T Consensus         3 ~Il~~i~~--~pisr~eLa~~~gls~~TVs~~v~~L~~~G   40 (62)
T d2hoea1           3 RILKRIMK--SPVSRVELAEELGLTKTTVGEIAKIFLEKG   40 (62)
T ss_dssp             CSHHHHHH--SCBCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            46778876  799999999999999999988888877644

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.46  E-value=0.12  Score=31.55  Aligned_cols=42  Identities=12%  Similarity=0.164  Sum_probs=33.4

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .++.|...|.+ ++.+|.+|||+.+|++...+++.+..+-..|
T Consensus         6 ~~~~iL~~L~~-~~~~s~~eLa~~l~vS~~ti~r~i~~L~~~G   47 (63)
T d1biaa1           6 VPLKLIALLAN-GEFHSGEQLGETLGMSRAAINKHIQTLRDWG   47 (63)
T ss_dssp             HHHHHHHHHTT-SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-CCcCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            34567788876 4789999999999999999998777655444

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.14  E-value=0.087  Score=40.16  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhc
Q 022515           30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQN   77 (296)
Q Consensus        30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~   77 (296)
                      ++|.--.++.|+..|..  +|.|+.|||+.+|+++..+++||...-..
T Consensus        10 ~~l~~~~R~~Il~~L~~--~~~~~~ela~~l~~s~~~v~~HL~~L~~~   55 (194)
T d2p4wa1          10 DVLGNETRRRILFLLTK--RPYFVSELSRELGVGQKAVLEHLRILEEA   55 (194)
T ss_dssp             HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence            34555567778888876  89999999999999999999999877654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=86.92  E-value=0.74  Score=33.69  Aligned_cols=92  Identities=13%  Similarity=0.045  Sum_probs=57.9

Q ss_pred             cCCCCEEEEecCCch-HHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEec--cCCCC-----CC-ccceeEehh
Q 022515          128 FEGLNSLVDVGGGIG-TAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGG--DMFEA-----IS-PADAVLLKW  197 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--D~~~~-----~p-~~D~v~~~~  197 (296)
                      .+++.+||=+|+|.. ..+..+++..-..++++.|. ++-.+.+++... -.++..  |..+.     .+ ++|+++-..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-~~~i~~~~~~~~~~~~~~~~~g~d~vid~~  108 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-DHVVDARRDPVKQVMELTRGRGVNVAMDFV  108 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-SEEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-ceeecCcccHHHHHHHhhCCCCceEEEEec
Confidence            456788999997654 55567777765668888898 666666664221 122221  11110     12 378777532


Q ss_pred             hhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          198 ILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       198 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                           ..+   ..+....+.+++   ||+++++-
T Consensus       109 -----g~~---~~~~~a~~~l~~---~G~iv~~G  131 (172)
T d1h2ba2         109 -----GSQ---ATVDYTPYLLGR---MGRLIIVG  131 (172)
T ss_dssp             -----CCH---HHHHHGGGGEEE---EEEEEECC
T ss_pred             -----Ccc---hHHHHHHHHHhC---CCEEEEEe
Confidence                 222   458888999999   99999876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.75  E-value=0.12  Score=38.52  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=57.9

Q ss_pred             cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCe-eEEeccCCCC-----CC-ccceeEeh
Q 022515          128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANL-KYVGGDMFEA-----IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri-~~~~~D~~~~-----~p-~~D~v~~~  196 (296)
                      ++++.+||=.|  +|.|.+++.+++.. +.++++.+. ++-.+.+++ ..+.+ .....|+.+.     .+ ++|+++-.
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~  101 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS  101 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence            56778899877  57788889999876 677776665 666666665 22221 1111222221     12 48988863


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      -     ..    +.++.+.++|+|   +|+++.+-
T Consensus       102 ~-----g~----~~~~~~~~~l~~---~G~~v~~G  124 (183)
T d1pqwa_         102 L-----AG----EAIQRGVQILAP---GGRFIELG  124 (183)
T ss_dssp             C-----CT----HHHHHHHHTEEE---EEEEEECS
T ss_pred             c-----cc----hHHHHHHHHhcC---CCEEEEEc
Confidence            2     22    346778889999   89988864

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.31  E-value=0.19  Score=30.72  Aligned_cols=44  Identities=11%  Similarity=0.103  Sum_probs=32.8

Q ss_pred             HHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           35 AIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        35 a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      --...|.+.|.+..+++|+.+||+.++++.+-++|.+...-..|
T Consensus         7 eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G   50 (65)
T d1j5ya1           7 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLG   50 (65)
T ss_dssp             HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence            33456777886544689999999999999999988776543333

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=85.96  E-value=0.54  Score=34.56  Aligned_cols=84  Identities=18%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             CEEEEecCCchHHHHHHHHHCCCCeEEeccc-hhHhhccCC------CCCCeeEEe------ccCCCCCCccceeEehhh
Q 022515          132 NSLVDVGGGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS------DLANLKYVG------GDMFEAISPADAVLLKWI  198 (296)
Q Consensus       132 ~~vLDvGgG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~------~D~~~~~p~~D~v~~~~v  198 (296)
                      ++|.=||+|.-..+.+..-.--+..++++|. ++-++..++      .........      .|..+..+++|++++.  
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~--   79 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV--   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC--
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE--
Confidence            4788899987665544333323679999998 766655432      111111111      1111123568998884  


Q ss_pred             hccCCchHHHHHHHHHHHhccc
Q 022515          199 LHDWNDEECVKILKKCKEAITS  220 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p  220 (296)
                         .+......+++++...+++
T Consensus        80 ---v~~~~~~~~~~~i~~~l~~   98 (184)
T d1bg6a2          80 ---VPAIHHASIAANIASYISE   98 (184)
T ss_dssp             ---SCGGGHHHHHHHHGGGCCT
T ss_pred             ---EchhHHHHHHHHhhhccCC
Confidence               2445567889999999987

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.37  E-value=0.73  Score=34.15  Aligned_cols=98  Identities=12%  Similarity=0.045  Sum_probs=60.2

Q ss_pred             cCCCCEEEEec--CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEeccCCCC----CC-ccceeEehhh
Q 022515          128 FEGLNSLVDVG--GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVGGDMFEA----IS-PADAVLLKWI  198 (296)
Q Consensus       128 ~~~~~~vLDvG--gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~D~~~~----~p-~~D~v~~~~v  198 (296)
                      ..++.+||=.|  ||.|.+++.+++.. +.+++.... ++-.+.+++. .+.+--...+..+.    -+ ++|+|+=. +
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~-v  106 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP-V  106 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEEC-S
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEc-C
Confidence            44567788887  67789999999987 777777765 5656665542 22111111111111    12 48976653 2


Q ss_pred             hccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeCCCC
Q 022515          199 LHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRENKK  238 (296)
Q Consensus       199 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~~~~  238 (296)
                          ..    ..+.+..+.|+|   ||+++++-.......
T Consensus       107 ----gg----~~~~~~l~~l~~---~Griv~~G~~~g~~~  135 (176)
T d1xa0a2         107 ----GG----RTLATVLSRMRY---GGAVAVSGLTGGAEV  135 (176)
T ss_dssp             ----TT----TTHHHHHHTEEE---EEEEEECSCCSSSCC
T ss_pred             ----Cc----hhHHHHHHHhCC---CceEEEeecccCccc
Confidence                22    247788899999   999999887655443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.24  E-value=0.71  Score=34.02  Aligned_cols=98  Identities=11%  Similarity=-0.050  Sum_probs=59.4

Q ss_pred             cCCCCEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCC--eeEEeccCCC-C-----C-CccceeEeh
Q 022515          128 FEGLNSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLAN--LKYVGGDMFE-A-----I-SPADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~r--i~~~~~D~~~-~-----~-p~~D~v~~~  196 (296)
                      .+++.+||=+|||. |.++..+++.....++++.|. ++-++.+++....  |++...|... .     . .++|+++-.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            67788999999765 455566777766678999998 7777877752211  2222233211 0     1 247877753


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      -     ..   ...+.+....+++  ++|+++++-...+
T Consensus       105 ~-----g~---~~~~~~~~~~~~~--~~G~~v~vG~~~~  133 (174)
T d1p0fa2         105 A-----GR---IETMMNALQSTYC--GSGVTVVLGLASP  133 (174)
T ss_dssp             S-----CC---HHHHHHHHHTBCT--TTCEEEECCCCCT
T ss_pred             C-----CC---chHHHHHHHHHHH--hcCceEEEEEecC
Confidence            2     11   2456667776765  1588888775433

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.21  E-value=1  Score=31.20  Aligned_cols=82  Identities=16%  Similarity=0.161  Sum_probs=52.5

Q ss_pred             CCchHHHHHHHHHCCCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhccCCchHHHHH
Q 022515          139 GGIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHDWNDEECVKI  210 (296)
Q Consensus       139 gG~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~~~d~~~~~i  210 (296)
                      ||.|..+..+++...+..++++|. +..++..+  ...+.++.||..++       ...++.+++..    -+|.....+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~--~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~----~~d~~n~~~   79 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL--RSGANFVHGDPTRVSDLEKANVRGARAVIVNL----ESDSETIHC   79 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH--HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC----SSHHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH--hcCccccccccCCHHHHHHhhhhcCcEEEEec----cchhhhHHH
Confidence            456778888999887777888888 77666554  34678999998873       23577777632    134444444


Q ss_pred             HHHHHHhcccCCCCcEEEEE
Q 022515          211 LKKCKEAITSDGKKGKVIII  230 (296)
Q Consensus       211 L~~~~~aL~p~~~gG~lli~  230 (296)
                      .. ..+.+.|   ..++++.
T Consensus        80 ~~-~~r~~~~---~~~iia~   95 (129)
T d2fy8a1          80 IL-GIRKIDE---SVRIIAE   95 (129)
T ss_dssp             HH-HHHHHCS---SSCEEEE
T ss_pred             HH-HHHHHCC---CceEEEE
Confidence            44 4455676   4555443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.86  E-value=0.39  Score=35.39  Aligned_cols=90  Identities=17%  Similarity=0.114  Sum_probs=56.4

Q ss_pred             cCCCCEEEEecC--CchHHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCCeeEEeccCCC---CCCccceeEehhhhc
Q 022515          128 FEGLNSLVDVGG--GIGTAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LANLKYVGGDMFE---AISPADAVLLKWILH  200 (296)
Q Consensus       128 ~~~~~~vLDvGg--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~D~~~---~~p~~D~v~~~~vlh  200 (296)
                      .+++.+||=.|+  |.|.++..+++.. ++++++.+. ++-.+.+++. .+.+ +-..|...   ...++|+|+-.  . 
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~~~-i~~~~~~~~~~~~~g~D~v~d~--~-   99 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEA-ATYAEVPERAKAWGGLDLVLEV--R-   99 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEE-EEGGGHHHHHHHTTSEEEEEEC--S-
T ss_pred             CCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccccccee-eehhhhhhhhhccccccccccc--c-
Confidence            677889998884  5578889999887 678888876 6666666542 2222 11111111   12358988752  1 


Q ss_pred             cCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          201 DWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       201 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                        . +    .+.+..++++|   +|+++.+-.
T Consensus       100 --G-~----~~~~~~~~l~~---~G~~v~~G~  121 (171)
T d1iz0a2         100 --G-K----EVEESLGLLAH---GGRLVYIGA  121 (171)
T ss_dssp             --C-T----THHHHHTTEEE---EEEEEEC--
T ss_pred             --c-h----hHHHHHHHHhc---CCcEEEEeC
Confidence              1 1    25677889999   899987753

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.54  E-value=0.25  Score=30.69  Aligned_cols=42  Identities=10%  Similarity=0.138  Sum_probs=34.3

Q ss_pred             HHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           36 IQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        36 ~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      -+..|+..|..+ +++|-.|||+.+|++...+.+.+.+++..|
T Consensus         6 N~~~Il~~i~~~-g~~sr~eLa~~~gLS~~Tvs~iv~~L~~~g   47 (70)
T d1z6ra1           6 NAGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVHEMLEAH   47 (70)
T ss_dssp             HHHHHHHHHHSS-CSCCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence            344577888774 899999999999999999988887777654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.08  E-value=0.37  Score=35.58  Aligned_cols=95  Identities=11%  Similarity=0.047  Sum_probs=60.3

Q ss_pred             cCCCCEEEEecCC--chHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCC-eeEEeccCCCC-----CC-ccceeEeh
Q 022515          128 FEGLNSLVDVGGG--IGTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLAN-LKYVGGDMFEA-----IS-PADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~D~~~~-----~p-~~D~v~~~  196 (296)
                      .+++.+||=.|+|  .|.++..+++.. +.++++.+. ++-.+.+++ ..+. |.....|+.+.     -+ ++|+++-.
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~  104 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDS  104 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeC
Confidence            6677899988655  678888898875 689999988 776776665 2222 22222333321     12 37876653


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEeeeeC
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDMIRE  235 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~~~~  235 (296)
                      -     ..    +.+....+.++|   +|++++......
T Consensus       105 ~-----g~----~~~~~~~~~l~~---~G~~v~~g~~~~  131 (179)
T d1qora2         105 V-----GR----DTWERSLDCLQR---RGLMVSFGNSSG  131 (179)
T ss_dssp             S-----CG----GGHHHHHHTEEE---EEEEEECCCTTC
T ss_pred             c-----cH----HHHHHHHHHHhc---CCeeeecccccC
Confidence            2     22    236678888999   899877654443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=83.64  E-value=2.8  Score=28.78  Aligned_cols=84  Identities=15%  Similarity=0.154  Sum_probs=48.1

Q ss_pred             EEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhccC
Q 022515          133 SLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHDW  202 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~~  202 (296)
                      +++=+|+  |.++..+++..  -+..++++|. ++.++.++.  .....+.||..++       ..++|.+++.     .
T Consensus         2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~-----~   72 (134)
T d2hmva1           2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--YATHAVIANATEENELLSLGIRNFEYVIVA-----I   72 (134)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--TCSEEEECCTTCTTHHHHHTGGGCSEEEEC-----C
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--hCCcceeeecccchhhhccCCccccEEEEE-----c
Confidence            3455665  45555554432  3678999999 888888863  2245667888763       2357876663     2


Q ss_pred             C-chHHHHHHHHHHHhcccCCCCcEEEE
Q 022515          203 N-DEECVKILKKCKEAITSDGKKGKVII  229 (296)
Q Consensus       203 ~-d~~~~~iL~~~~~aL~p~~~gG~lli  229 (296)
                      + ++....+...+++.+ |   ..+++.
T Consensus        73 ~~~~~~~~~~~~~~~~~-~---~~~iia   96 (134)
T d2hmva1          73 GANIQASTLTTLLLKEL-D---IPNIWV   96 (134)
T ss_dssp             CSCHHHHHHHHHHHHHT-T---CSEEEE
T ss_pred             CchHHhHHHHHHHHHHc-C---CCcEEe
Confidence            3 333333444444444 3   356544

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.55  E-value=1.6  Score=31.68  Aligned_cols=94  Identities=13%  Similarity=-0.028  Sum_probs=54.8

Q ss_pred             cCCCCEEEEecCCch-HHHHHHHHHCCCCeEEeccc-hhHhhccCCC-CCC-eeEEeccCC-CC------CCccceeEeh
Q 022515          128 FEGLNSLVDVGGGIG-TAAKAIAKAFPKLECTCFDL-PHVVNGLDSD-LAN-LKYVGGDMF-EA------ISPADAVLLK  196 (296)
Q Consensus       128 ~~~~~~vLDvGgG~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~r-i~~~~~D~~-~~------~p~~D~v~~~  196 (296)
                      .+++.+||=+|+|.+ ..+..+++..-..+++++|. ++-++.+++. .+. |++...|.. +.      ..++|+++-.
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~  105 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC  105 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence            677889999998884 55555666766668999998 7777777752 221 111111111 10      1247888653


Q ss_pred             hhhccCCchHHHHHHHHHHHhcccCCCCcEEEEEee
Q 022515          197 WILHDWNDEECVKILKKCKEAITSDGKKGKVIIIDM  232 (296)
Q Consensus       197 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~e~  232 (296)
                      -     ...   ..+..+...+++   ||.+++.-.
T Consensus       106 ~-----G~~---~~~~~a~~~~~~---g~~~~~~~g  130 (175)
T d1cdoa2         106 V-----GNV---GVMRNALESCLK---GWGVSVLVG  130 (175)
T ss_dssp             S-----CCH---HHHHHHHHTBCT---TTCEEEECS
T ss_pred             c-----CCH---HHHHHHHHHhhC---CCcceeEEE
Confidence            2     121   346666666666   555555443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.43  E-value=3.1  Score=28.59  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             EEEEecCCchHHHHHHHHHC--CCCeEEeccc-hhHhhccCCCCCCeeEEeccCCCC-------CCccceeEehhhhccC
Q 022515          133 SLVDVGGGIGTAAKAIAKAF--PKLECTCFDL-PHVVNGLDSDLANLKYVGGDMFEA-------ISPADAVLLKWILHDW  202 (296)
Q Consensus       133 ~vLDvGgG~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~D~~~~-------~p~~D~v~~~~vlh~~  202 (296)
                      +|+=+|+  |.++..+++..  .+..++++|. |+.++.+.. .-.+.++.||..++       ...+|.++..     .
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~-~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t   73 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA-EIDALVINGDCTKIKTLEDAGIEDADMYIAV-----T   73 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-HCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----C
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhh-hhhhhhccCcccchhhhhhcChhhhhhhccc-----C
Confidence            5666665  66666666543  3678999998 888776652 22577889998873       2257877773     2


Q ss_pred             CchHHHHHHHHHHHhccc
Q 022515          203 NDEECVKILKKCKEAITS  220 (296)
Q Consensus       203 ~d~~~~~iL~~~~~aL~p  220 (296)
                      ++++.-.+.....+.+.+
T Consensus        74 ~~d~~N~~~~~~~k~~~~   91 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGI   91 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            333333345555666776

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=83.26  E-value=0.83  Score=38.05  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=27.7

Q ss_pred             CCCCEEEEecCCchHHHHHHHHHC-------CCCeEEeccchhH
Q 022515          129 EGLNSLVDVGGGIGTAAKAIAKAF-------PKLECTCFDLPHV  165 (296)
Q Consensus       129 ~~~~~vLDvGgG~G~~~~~l~~~~-------p~~~~~~~D~~~~  165 (296)
                      ++..+||++|+|+|.++..+++..       ..+++..++....
T Consensus        78 ~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~  121 (365)
T d1zkda1          78 PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV  121 (365)
T ss_dssp             CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred             CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchh
Confidence            345689999999999998887753       2346888888333

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.86  E-value=0.11  Score=34.78  Aligned_cols=48  Identities=17%  Similarity=0.315  Sum_probs=38.6

Q ss_pred             HHHHHHHHcCcchhcccCCCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           30 MTLKCAIQLGIPDIISKHGKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        30 ~~l~~a~~l~lf~~L~~~~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      .++..-.++.|...|... ++.|+.|||+.+++++..+.+++....+.|
T Consensus        11 ~~l~~p~r~~IL~~L~~~-~~~~~~eLa~~l~is~~~vs~~l~~L~~~g   58 (100)
T d1ub9a_          11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDLTPGNLDSHIRVLERNG   58 (100)
T ss_dssp             HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHhccC-CCeeHHHHHHHHhhccccccHHHHHHhhhc
Confidence            344445678888888653 789999999999999999999888877655

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=81.15  E-value=1.4  Score=31.53  Aligned_cols=91  Identities=10%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             CEEEEecCCc-hHHHHHHHHHCCCCeEEeccc-hhHhhccCC-CCCCeeE---EeccCCCCCCccceeEehhhhccCCch
Q 022515          132 NSLVDVGGGI-GTAAKAIAKAFPKLECTCFDL-PHVVNGLDS-DLANLKY---VGGDMFEAISPADAVLLKWILHDWNDE  205 (296)
Q Consensus       132 ~~vLDvGgG~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~---~~~D~~~~~p~~D~v~~~~vlh~~~d~  205 (296)
                      .+|+=||+|. |.+....+.+. +..+++++. +........ ..+...+   ...+..+....+|++++.-     +..
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~v-----ka~   74 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ-GHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTL-----KAW   74 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECS-----CGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHC-CCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEee-----ccc
Confidence            3688899876 54444433332 568888887 543332221 1111111   1111111223589988843     333


Q ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEe
Q 022515          206 ECVKILKKCKEAITSDGKKGKVIIID  231 (296)
Q Consensus       206 ~~~~iL~~~~~aL~p~~~gG~lli~e  231 (296)
                      +...+++.+...+.+   +..++.+-
T Consensus        75 ~~~~~~~~l~~~~~~---~~~Iv~~q   97 (167)
T d1ks9a2          75 QVSDAVKSLASTLPV---TTPILLIH   97 (167)
T ss_dssp             GHHHHHHHHHTTSCT---TSCEEEEC
T ss_pred             chHHHHHhhccccCc---ccEEeecc
Confidence            456778888888887   56665543

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=80.75  E-value=0.17  Score=34.46  Aligned_cols=31  Identities=19%  Similarity=0.342  Sum_probs=27.1

Q ss_pred             CCCCCHHHHHHHcCCCCcchhhhHHHhhhcC
Q 022515           48 GKPMTLNELVSALTINPSKSRCQLRTWFQND   78 (296)
Q Consensus        48 ~~~~t~~eLA~~~~~~~~~l~~~l~~~~~~~   78 (296)
                      ++|+|+.+||+.+++++..+.+.+......|
T Consensus        34 ~~~~t~~eLa~~~~i~~~tvs~~l~~L~~~G   64 (109)
T d2d1ha1          34 EKPITSEELADIFKLSKTTVENSLKKLIELG   64 (109)
T ss_dssp             CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHCccHhHHHHHHHHHHHCC
Confidence            3789999999999999999999888777654