Citrus Sinensis ID: 022537

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MKSSPSTTSLGANRNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDENRILVSSKGNIK
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHccccHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccccccccEEEEEEcccccEEEEccccccEEEEccccccc
cccccccccccccccHHHcccccccccccccccccccccccccEEEEccccccccccHHHccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHccccccccEEEEEEcccccEEEcccccHHHEEEccccccc
mksspsttslganrnyHSLLgkiplssnqnntlnvnsnstdidICNKIEDTHSAFSRLELKQTNELANHAAQNIarrdkvvnapslepescasgksnrklkglkstksgtqgsnadapnglnlsngcrydsslgLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKtsknhirwkgsdslgtskLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENhqkymflteediaslpcfqnqtliaikapqasyievpdpdenrilvsskgnik
mksspsttslganrNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNApslepescasgksnrklkglkstksgtqgsnadapnglnlsnGCRYDSSLGLLTRKFINLIQeakdgtldlnrtaevlevqkrriyditnvlegigliektsknhirwkgsdslgtsklDDQVARLKAEIeslhaeecriddsiREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPqasyievpdpdenrilvsskgnik
MKSSPSTTSLGANRNYHSLLGKIPlssnqnntlnvnsnstDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDENRILVSSKGNIK
*****************************************IDICNKIE**************************************************************************SNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK****************************C*I*********LIRT*****NHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIE******************
************************************************************************************************************************************LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLG***************ESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDENRIL*SS*G***
**********GANRNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDENRILVSSKGNIK
*************RNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQ****************************************************************CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDENRILVSS*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKSSPSTTSLGANRNYHSLLGKIPLSSNQNNTLNVNSNSTDIDICNKIEDTHSAFSRLELKQTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGxxxxxxxxxxxxxxxxxxxxxECRxxxxxxxxxxxxxxxxxxxxxQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDENRILVSSKGNIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q9FV70396 Transcription factor E2FC yes no 0.633 0.472 0.682 6e-70
Q9FV71 469 Transcription factor E2FB no no 0.664 0.417 0.582 1e-60
Q9FNY0 485 Transcription factor E2FA no no 0.627 0.381 0.618 3e-58
Q16254 413 Transcription factor E2F4 yes no 0.518 0.370 0.509 3e-34
Q8R0K9 410 Transcription factor E2F4 yes no 0.518 0.373 0.509 4e-34
O35261 457 Transcription factor E2F3 no no 0.657 0.424 0.422 1e-33
O00716 465 Transcription factor E2F3 no no 0.657 0.417 0.422 2e-33
Q61502 335 Transcription factor E2F5 no no 0.572 0.504 0.456 2e-33
Q15329 346 Transcription factor E2F5 no no 0.518 0.442 0.490 6e-33
Q62814 300 Transcription factor E2F5 no no 0.518 0.51 0.496 6e-33
>sp|Q9FV70|E2FC_ARATH Transcription factor E2FC OS=Arabidopsis thaliana GN=E2FC PE=1 SV=1 Back     alignment and function desciption
 Score =  264 bits (674), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 156/189 (82%), Gaps = 2/189 (1%)

Query: 97  NRKLKGLKSTKSGTQGSNADAPNG-LN-LSNGCRYDSSLGLLTRKFINLIQEAKDGTLDL 154
           N+   G K  K+G + +N +  NG LN  S  CRYDSSLGLLT+KF+ LIQEA+DGTLDL
Sbjct: 122 NKSKGGTKLLKAGKRMANGEVQNGGLNGASINCRYDSSLGLLTKKFVKLIQEAEDGTLDL 181

Query: 155 NRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIE 214
           N  A VLEVQKRRIYDITNVLEGIGLIEKT+KNHIRWKG+D+LG   L DQ++RLK+E+E
Sbjct: 182 NYCAVVLEVQKRRIYDITNVLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVE 241

Query: 215 SLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQAS 274
           S+ +EE R+DD IRE+QE +R+LEE++  ++YMF+TEEDI SLP FQNQTL+AIKAP AS
Sbjct: 242 SMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTAS 301

Query: 275 YIEVPDPDE 283
           YIEVPDPDE
Sbjct: 302 YIEVPDPDE 310
Involved in transcriptional repression. May act by repressing E2F-regulated genes in mature differentiated cells, but is not an antagonist of E2FA. Restricts cell division and is involved in the coordination between cell proliferation and endoreduplication during development. May play a role during the transition from skotomorphogenesis to photomorphogenesis. Regulated by phosphorylation-dependent proteolysis via the protein-ubiquitin ligase SCF(SKP2A) complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FV71|E2FB_ARATH Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB PE=1 SV=1 Back     alignment and function description
>sp|Q9FNY0|E2FA_ARATH Transcription factor E2FA OS=Arabidopsis thaliana GN=E2FA PE=1 SV=1 Back     alignment and function description
>sp|Q16254|E2F4_HUMAN Transcription factor E2F4 OS=Homo sapiens GN=E2F4 PE=1 SV=2 Back     alignment and function description
>sp|Q8R0K9|E2F4_MOUSE Transcription factor E2F4 OS=Mus musculus GN=E2f4 PE=2 SV=1 Back     alignment and function description
>sp|O35261|E2F3_MOUSE Transcription factor E2F3 OS=Mus musculus GN=E2f3 PE=1 SV=2 Back     alignment and function description
>sp|O00716|E2F3_HUMAN Transcription factor E2F3 OS=Homo sapiens GN=E2F3 PE=1 SV=1 Back     alignment and function description
>sp|Q61502|E2F5_MOUSE Transcription factor E2F5 OS=Mus musculus GN=E2f5 PE=2 SV=2 Back     alignment and function description
>sp|Q15329|E2F5_HUMAN Transcription factor E2F5 OS=Homo sapiens GN=E2F5 PE=1 SV=1 Back     alignment and function description
>sp|Q62814|E2F5_RAT Transcription factor E2F5 (Fragment) OS=Rattus norvegicus GN=E2f5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
302142646 436 unnamed protein product [Vitis vinifera] 0.796 0.538 0.670 4e-85
359492228 437 PREDICTED: transcription factor E2FC-lik 0.796 0.537 0.670 5e-85
255538912386 E2F4,5, putative [Ricinus communis] gi|2 0.857 0.655 0.640 2e-84
356517978 473 PREDICTED: transcription factor E2FC-lik 0.661 0.412 0.695 3e-73
356509584355 PREDICTED: transcription factor E2FC-lik 0.674 0.560 0.675 4e-73
297847022 415 T2E6.2 [Arabidopsis lyrata subsp. lyrata 0.752 0.534 0.625 3e-71
224062015 476 transcription factor E2F [Populus tricho 0.844 0.523 0.555 6e-70
334183120395 E2F-5-like protein AtE2F2 [Arabidopsis t 0.633 0.473 0.682 4e-68
15220994 396 E2F-5-like protein AtE2F2 [Arabidopsis t 0.633 0.472 0.682 4e-68
9802604 426 T2E6.2 [Arabidopsis thaliana] 0.633 0.438 0.682 6e-68
>gi|302142646|emb|CBI19849.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 163/243 (67%), Positives = 191/243 (78%), Gaps = 8/243 (3%)

Query: 49  EDTHSAFSRLELKQTNELANHAAQNIARRDKV------VNAPSLEPESCASGKSNR-KLK 101
           +D  SAF +L LKQTNE+ +H     +R+  +      +  PSLEPESC  GK    K K
Sbjct: 63  DDRQSAFVKLPLKQTNEI-DHCKGQTSRQATLDGHGEEMKFPSLEPESCVGGKQQHSKSK 121

Query: 102 GLKSTKSGTQGSNADAPNGLNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVL 161
             K+ KSG Q SNA++PN LN    CRYDSSLGLLT+KFI+LIQEAKDGTLDLNRTA+VL
Sbjct: 122 VSKNAKSGAQRSNAESPNILNPVVTCRYDSSLGLLTKKFISLIQEAKDGTLDLNRTADVL 181

Query: 162 EVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEEC 221
           EVQKRRIYDITNVLEGIGLIEKTSKNHI WKG D  G  K+D++V RLKAE+E L+AEEC
Sbjct: 182 EVQKRRIYDITNVLEGIGLIEKTSKNHISWKGFDMSGPQKMDNEVTRLKAEVERLYAEEC 241

Query: 222 RIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDP 281
           R+DD IREKQEL+R +  +EN QK++FLTEEDI +LPCFQNQTLIAIKAPQAS +EVPDP
Sbjct: 242 RLDDCIREKQELLRAIAGDENCQKHLFLTEEDITTLPCFQNQTLIAIKAPQASSVEVPDP 301

Query: 282 DEN 284
           DE+
Sbjct: 302 DED 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359492228|ref|XP_002280139.2| PREDICTED: transcription factor E2FC-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255538912|ref|XP_002510521.1| E2F4,5, putative [Ricinus communis] gi|223551222|gb|EEF52708.1| E2F4,5, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356517978|ref|XP_003527661.1| PREDICTED: transcription factor E2FC-like [Glycine max] Back     alignment and taxonomy information
>gi|356509584|ref|XP_003523527.1| PREDICTED: transcription factor E2FC-like [Glycine max] Back     alignment and taxonomy information
>gi|297847022|ref|XP_002891392.1| T2E6.2 [Arabidopsis lyrata subsp. lyrata] gi|297337234|gb|EFH67651.1| T2E6.2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224062015|ref|XP_002300712.1| transcription factor E2F [Populus trichocarpa] gi|222842438|gb|EEE79985.1| transcription factor E2F [Populus trichocarpa] Back     alignment and taxonomy information
>gi|334183120|ref|NP_001185166.1| E2F-5-like protein AtE2F2 [Arabidopsis thaliana] gi|332194102|gb|AEE32223.1| E2F-5-like protein AtE2F2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15220994|ref|NP_175222.1| E2F-5-like protein AtE2F2 [Arabidopsis thaliana] gi|75309802|sp|Q9FV70.1|E2FC_ARATH RecName: Full=Transcription factor E2FC; AltName: Full=E2F transcription factor-2; Short=AtE2F2 gi|10443851|gb|AAG17609.1|AF242581_1 E2F transcription factor-2 E2F2 [Arabidopsis thaliana] gi|15010670|gb|AAK73994.1| At1g47870/T2E6_2 [Arabidopsis thaliana] gi|16323300|gb|AAL15405.1| At1g47870/T2E6_2 [Arabidopsis thaliana] gi|19578311|emb|CAD10631.1| transcription factor E2Fc [Arabidopsis thaliana] gi|332194101|gb|AEE32222.1| E2F-5-like protein AtE2F2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9802604|gb|AAF99806.1|AC012463_23 T2E6.2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
TAIR|locus:2202390396 ATE2F2 [Arabidopsis thaliana ( 0.749 0.558 0.602 2.9e-64
TAIR|locus:3685148 469 E2F1 "E2F transcription factor 0.664 0.417 0.582 4.6e-57
TAIR|locus:2039220 514 E2F3 "E2F transcription factor 0.705 0.404 0.470 7e-38
UNIPROTKB|F1P324 348 E2F3 "Uncharacterized protein" 0.674 0.571 0.432 5.1e-35
UNIPROTKB|F1NR90 342 E2F3 "Uncharacterized protein" 0.674 0.581 0.425 6.5e-35
UNIPROTKB|F1MYH2 463 E2F3 "Uncharacterized protein" 0.657 0.419 0.427 2.2e-34
UNIPROTKB|J9P6U4 334 E2F3 "Uncharacterized protein" 0.657 0.580 0.427 2.2e-34
MGI|MGI:105091 335 E2f5 "E2F transcription factor 0.572 0.504 0.456 7.4e-34
UNIPROTKB|F1MBE6 404 E2F4 "Uncharacterized protein" 0.518 0.378 0.509 9.5e-34
UNIPROTKB|F1RUH1 358 E2F3 "Uncharacterized protein" 0.623 0.513 0.442 9.5e-34
TAIR|locus:2202390 ATE2F2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 135/224 (60%), Positives = 167/224 (74%)

Query:    62 QTNELANHAAQNIARRDKVVNAPSLEPESCASGKSNRKLKGLKSTKSGTQGSNADAPNG- 120
             Q   +AN +        KV+      P++      N+   G K  K+G + +N +  NG 
Sbjct:    88 QLGSIANMSGGESIDIAKVIVKQESSPQN-VKRVYNKSKGGTKLLKAGKRMANGEVQNGG 146

Query:   121 LN-LSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIG 179
             LN  S  CRYDSSLGLLT+KF+ LIQEA+DGTLDLN  A VLEVQKRRIYDITNVLEGIG
Sbjct:   147 LNGASINCRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITNVLEGIG 206

Query:   180 LIEKTSKNHIRWKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239
             LIEKT+KNHIRWKG+D+LG   L DQ++RLK+E+ES+ +EE R+DD IRE+QE +R+LEE
Sbjct:   207 LIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEE 266

Query:   240 NENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDE 283
             ++  ++YMF+TEEDI SLP FQNQTL+AIKAP ASYIEVPDPDE
Sbjct:   267 DDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTASYIEVPDPDE 310
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA
GO:0003677 "DNA binding" evidence=IDA
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0051301 "cell division" evidence=IMP
GO:0005730 "nucleolus" evidence=IDA
GO:0042023 "DNA endoreduplication" evidence=RCA;IMP
GO:0046982 "protein heterodimerization activity" evidence=IPI
GO:0051782 "negative regulation of cell division" evidence=IMP
GO:0006302 "double-strand break repair" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
GO:0051302 "regulation of cell division" evidence=RCA
TAIR|locus:3685148 E2F1 "E2F transcription factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039220 E2F3 "E2F transcription factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P324 E2F3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NR90 E2F3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYH2 E2F3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6U4 E2F3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:105091 E2f5 "E2F transcription factor 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBE6 E2F4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUH1 E2F3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_1003009
annotation not avaliable (415 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.3__1291__AT3G12280.1
annotation not avaliable (1012 aa)
    • • 0.718
fgenesh2_kg.6__250__AT5G03415.1
annotation not avaliable (389 aa)
    ••••0.678
fgenesh2_kg.6__159__AT5G02470.2
annotation not avaliable (290 aa)
    ••• 0.634

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
pfam0231967 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA 8e-31
>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain Back     alignment and domain information 
 Score =  109 bits (276), Expect = 8e-31
 Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 1/67 (1%)

Query: 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSK 186
           R + SLGLLT+KF+ L +++ DG  DLN  A+ L+V QKRRIYDITNVLEGIGLIEK SK
Sbjct: 1   RKEKSLGLLTQKFLKLCEKSPDGITDLNEAAKELDVKQKRRIYDITNVLEGIGLIEKKSK 60

Query: 187 NHIRWKG 193
           N IRW G
Sbjct: 61  NEIRWIG 67

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
KOG2577 354 consensus Transcription factor E2F/dimerization pa 100.0
PF0231971 E2F_TDP: E2F/DP family winged-helix DNA-binding do 99.89
KOG2578 388 consensus Transcription factor E2F/dimerization pa 99.81
KOG2578388 consensus Transcription factor E2F/dimerization pa 99.09
KOG2829 326 consensus E2F-like protein [Transcription] 99.03
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 95.76
COG1378247 Predicted transcriptional regulators [Transcriptio 94.45
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 93.92
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 93.84
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 93.6
cd0009267 HTH_CRP helix_turn_helix, cAMP Regulatory protein 93.32
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 92.28
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 92.23
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 91.18
COG3355126 Predicted transcriptional regulator [Transcription 91.02
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 90.72
smart0041866 HTH_ARSR helix_turn_helix, Arsenical Resistance Op 89.04
PF14394171 DUF4423: Domain of unknown function (DUF4423) 88.81
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 88.24
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 87.81
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 87.59
cd00890129 Prefoldin Prefoldin is a hexameric molecular chape 87.34
TIGR02944130 suf_reg_Xantho FeS assembly SUF system regulator, 87.27
PF1373055 HTH_36: Helix-turn-helix domain 87.03
PF0907985 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The 86.14
cd0009078 HTH_ARSR Arsenical Resistance Operon Repressor and 85.32
TIGR0012269 birA_repr_reg BirA biotin operon repressor domain. 84.86
PF0039264 GntR: Bacterial regulatory proteins, gntR family; 84.33
PRK10163271 DNA-binding transcriptional repressor AllR; Provis 83.61
cd0876887 Cdc6_C Winged-helix domain of essential DNA replic 83.58
smart0041948 HTH_CRP helix_turn_helix, cAMP Regulatory protein. 83.22
smart0034560 HTH_GNTR helix_turn_helix gluconate operon transcr 82.57
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 81.55
TIGR02147271 Fsuc_second hypothetical protein, TIGR02147. This 81.36
PF0418275 B-block_TFIIIC: B-block binding subunit of TFIIIC; 80.37
cd00584129 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin 80.34
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-60  Score=455.34  Aligned_cols=175  Identities=53%  Similarity=0.801  Sum_probs=167.4

Q ss_pred             CCCCCCCCCcCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhhhhhhhhhhhhhHhhhccceeccccCceEEecCCCCCCc
Q 022537          121 LNLSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTS  200 (295)
Q Consensus       121 ~tp~~~~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~s~~~  200 (295)
                      ..+...+|+++|||+||+|||.|++++|+|++|||.||++|+|||||||||||||||||||+|++||+|+|+|.+.+..+
T Consensus        61 ~s~~~~~R~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L~VqKRRIYDITNVLEGI~LIeKksKN~IqW~G~~~~~~~  140 (354)
T KOG2577|consen   61 SSPSESTRSDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVLNVQKRRIYDITNVLEGIGLIEKKSKNNIQWIGGDFNSTG  140 (354)
T ss_pred             cCCCCcccchhhHHHHHHHHHHHHHhCCCceeeHHHHHHHhccccceeeehhhhhhcccceeeccccceeeecCCCcccc
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999987667


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHhhhhcCCCCCCCeEEEEeCCCCCeEEecC
Q 022537          201 KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPD  280 (295)
Q Consensus       201 ~~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted~~n~~~aYVT~eDI~~i~~f~~qTviAIKAP~gT~LEVPd  280 (295)
                      +..++.+.|++|++.|.++|+.||++|++|+++|+.|++|.+|++||||||+||++|+.|++|||||||||++|+||||+
T Consensus       141 ~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~lted~~n~~laYVT~eDI~~i~~f~~q~vi~vkap~et~levp~  220 (354)
T KOG2577|consen  141 GVPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRLLTEDVENRRLAYVTYEDIRSIPGFDEQTVIAVKAPPETRLEVPD  220 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccceeeeHHHHhhccccCCceEEEEecCCcceEeccc
Confidence            78888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc---eeeeecCCCCC
Q 022537          281 PDEN---RILVSSKGNIK  295 (295)
Q Consensus       281 P~e~---~~l~s~~G~I~  295 (295)
                      |+++   ++|+|.+|||.
T Consensus       221 ~~~~~~~i~L~s~~GpI~  238 (354)
T KOG2577|consen  221 PDEDRYQIRLKSNQGPID  238 (354)
T ss_pred             CCCCceEEEeccCCCcee
Confidence            9876   47889999994

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>KOG2829 consensus E2F-like protein [Transcription] Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>COG1378 Predicted transcriptional regulators [Transcription] Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>COG3355 Predicted transcriptional regulator [Transcription] Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor Back     alignment and domain information
>PF14394 DUF4423: Domain of unknown function (DUF4423) Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly Back     alignment and domain information
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial Back     alignment and domain information
>PF13730 HTH_36: Helix-turn-helix domain Back     alignment and domain information
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8) Back     alignment and domain information
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors Back     alignment and domain information
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain Back     alignment and domain information
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional Back     alignment and domain information
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding Back     alignment and domain information
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein Back     alignment and domain information
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147 Back     alignment and domain information
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks Back     alignment and domain information
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
1cf7_A76 Structural Basis Of Dna Recognition By The Heterodi 3e-21
>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 76 Back     alignment and structure 
Iteration: 1

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 56/67 (83%), Gaps = 1/67 (1%)
Query: 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSK 186
           R++ SLGLLT KF++L+QEAKDG LDL   A+ L V QKRRIYDITNVLEGIGLIEK SK
Sbjct: 7   RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 66
Query: 187 NHIRWKG 193
           N I+WKG
Sbjct: 67  NSIQWKG 73

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 2e-29
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 4e-28
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 76 Back     alignment and structure
 Score =  106 bits (265), Expect = 2e-29
 Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 124 SNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIE 182
               R++ SLGLLT KF++L+QEAKDG LDL   A+ L V QKRRIYDITNVLEGIGLIE
Sbjct: 3   GTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62

Query: 183 KTSKNHIRWKG 193
           K SKN I+WKG
Sbjct: 63  KKSKNSIQWKG 73
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Length = 106 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
2aze_B106 Transcription factor E2F1; coiled coil, beta sandw 99.97
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 99.96
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 99.42
2xvc_A59 ESCRT-III, SSO0910; cell cycle, cell division, cyt 94.49
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 94.04
3deu_A166 Transcriptional regulator SLYA; MARR, WING-helix, 93.82
1qbj_A81 Protein (double-stranded RNA specific adenosine D 93.46
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 93.37
1r7j_A95 Conserved hypothetical protein SSO10A; winged heli 93.1
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 93.04
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 92.71
3r0a_A123 Putative transcriptional regulator; structural gen 92.41
2oqg_A114 Possible transcriptional regulator, ARSR family P; 92.4
3jw4_A148 Transcriptional regulator, MARR/EMRR family; DNA-b 91.52
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 91.12
2a61_A145 Transcriptional regulator TM0710; APC4350, MCSG, m 90.94
2gxg_A146 146AA long hypothetical transcriptional regulator; 90.65
1ku9_A152 Hypothetical protein MJ223; putative transcription 90.64
3qph_A 342 TRMB, A global transcription regulator; transcript 90.51
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 89.79
1sfx_A109 Conserved hypothetical protein AF2008; structural 88.81
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 88.59
2fa5_A162 Transcriptional regulator MARR/EMRR family; multip 88.48
1s3j_A155 YUSO protein; structural genomics, MARR transcript 88.45
3bj6_A152 Transcriptional regulator, MARR family; helix-turn 88.34
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 88.25
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 87.83
3u2r_A168 Regulatory protein MARR; structural genomics, PSI- 87.63
2qww_A154 Transcriptional regulator, MARR family; YP_013417. 87.52
2y75_A129 HTH-type transcriptional regulator CYMR; DNA bindi 87.52
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 87.46
2eth_A154 Transcriptional regulator, putative, MAR family; M 87.46
2frh_A127 SARA, staphylococcal accessory regulator A; winged 87.32
2hr3_A147 Probable transcriptional regulator; MCSG, structur 87.21
3cuo_A99 Uncharacterized HTH-type transcriptional regulato; 87.1
2kko_A108 Possible transcriptional regulatory protein (possi 87.03
1on2_A142 Transcriptional regulator MNTR; helix-turn-helix, 86.93
3s2w_A159 Transcriptional regulator, MARR family; structural 86.77
3oop_A143 LIN2960 protein; protein structure initiative, PSI 86.64
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 86.62
1y0u_A96 Arsenical resistance operon repressor, putative; s 86.56
2d1h_A109 ST1889, 109AA long hypothetical transcriptional re 86.31
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 86.27
4b8x_A147 SCO5413, possible MARR-transcriptional regulator; 86.13
3jth_A98 Transcription activator HLYU; transcription factor 85.96
3cjn_A162 Transcriptional regulator, MARR family; silicibact 85.66
1ub9_A100 Hypothetical protein PH1061; helix-turn-helix moti 85.31
3f6o_A118 Probable transcriptional regulator, ARSR family pr 84.84
1r1u_A106 CZRA, repressor protein; zinc, DNA binding, transc 84.58
2x4h_A139 Hypothetical protein SSO2273; transcription; 2.30A 84.5
2bv6_A142 MGRA, HTH-type transcriptional regulator MGRA; mul 84.43
2fbi_A142 Probable transcriptional regulator; MARR, APC5816, 84.26
2lkp_A119 Transcriptional regulator, ARSR family; symmetric 84.23
3k0l_A162 Repressor protein; helix-turn-helix, structural ge 84.19
2fu4_A83 Ferric uptake regulation protein; DNA binding doma 84.01
3e6m_A161 MARR family transcriptional regulator; APC88769, s 84.0
2nyx_A168 Probable transcriptional regulatory protein, RV14; 83.4
3rkx_A 323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 83.31
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 83.22
3boq_A160 Transcriptional regulator, MARR family; MARR famil 83.14
2p4w_A202 Transcriptional regulatory protein ARSR family; ar 82.91
2xrn_A241 HTH-type transcriptional regulator TTGV; DNA-bindi 82.65
1u2w_A122 CADC repressor, cadmium efflux system accessory pr 82.61
3hsr_A140 HTH-type transcriptional regulator SARZ; helix-tur 82.59
3bdd_A142 Regulatory protein MARR; putative multiple antibio 82.42
3bja_A139 Transcriptional regulator, MARR family, putative; 82.13
3ech_A142 MEXR, multidrug resistance operon repressor; winge 82.11
4ham_A134 LMO2241 protein; structural genomics, PSI-biology, 81.58
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 81.49
1j5y_A187 Transcriptional regulator, biotin repressor famil; 81.4
3ihu_A222 Transcriptional regulator, GNTR family; YP_298823. 81.0
2nnn_A140 Probable transcriptional regulator; structural gen 80.77
3fm5_A150 Transcriptional regulator; MCSG, PF04017, PSI, MAR 80.7
2pg4_A95 Uncharacterized protein; structural genomics, join 80.66
3pqk_A102 Biofilm growth-associated repressor; helix-turn-he 80.57
2hzt_A107 Putative HTH-type transcriptional regulator YTCD; 80.21
1tbx_A99 ORF F-93, hypothetical 11.0 kDa protein; sulfolobu 80.17
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2 Back     alignment and structure
Probab=99.97  E-value=9.9e-32  Score=219.12  Aligned_cols=94  Identities=24%  Similarity=0.401  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHhhhhcCCCCCCCeEEEEeCCCCCeEEecCC
Q 022537          202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDP  281 (295)
Q Consensus       202 ~~~~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted~~n~~~aYVT~eDI~~i~~f~~qTviAIKAP~gT~LEVPdP  281 (295)
                      +..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|++|++|||||||||+||+||||+|
T Consensus         4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp   83 (106)
T 2aze_B            4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS   83 (106)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCc--eeeeecCCCCC
Q 022537          282 DEN--RILVSSKGNIK  295 (295)
Q Consensus       282 ~e~--~~l~s~~G~I~  295 (295)
                      ++.  ++|+|++|||.
T Consensus        84 ~~~yqi~LkS~~GPId   99 (106)
T 2aze_B           84 SENFQISLKSKQGPID   99 (106)
T ss_dssp             SSCEEEEEECSSSCCE
T ss_pred             CcceEEEEECCCCCEE
Confidence            874  68999999994
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} Back     alignment and structure
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 Back     alignment and structure
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus} Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Back     alignment and structure
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Back     alignment and structure
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} Back     alignment and structure
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Back     alignment and structure
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Back     alignment and structure
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} Back     alignment and structure
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Back     alignment and structure
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* Back     alignment and structure
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 Back     alignment and structure
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 Back     alignment and structure
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} Back     alignment and structure
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A Back     alignment and structure
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Back     alignment and structure
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} Back     alignment and structure
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Back     alignment and structure
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} Back     alignment and structure
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Back     alignment and structure
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 Back     alignment and structure
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A Back     alignment and structure
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Back     alignment and structure
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A Back     alignment and structure
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} Back     alignment and structure
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} Back     alignment and structure
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A Back     alignment and structure
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes} Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 Back     alignment and structure
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha} Back     alignment and structure
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} Back     alignment and structure
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 Back     alignment and structure
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A Back     alignment and structure
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 Back     alignment and structure
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1cf7a_67 a.4.5.17 (A:) Cell cycle transcription factor E2F- 3e-30
d2azeb1101 e.63.1.2 (B:201-301) Transcription factor E2F1 {Hu 2e-27
d1cf7b_82 a.4.5.17 (B:) Cell cycle transcription factor DP-2 6e-05
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 3e-30
 Identities = 48/66 (72%), Positives = 55/66 (83%), Gaps = 1/66 (1%)

Query: 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSK 186
           R++ SLGLLT KF++L+QEAKDG LDL   A+ L V QKRRIYDITNVLEGIGLIEK SK
Sbjct: 2   RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSK 61

Query: 187 NHIRWK 192
           N I+WK
Sbjct: 62  NSIQWK 67
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d2azeb1101 Transcription factor E2F1 {Human (Homo sapiens) [T 99.97
d1cf7a_67 Cell cycle transcription factor E2F-4 {Human (Homo 99.96
d1cf7b_82 Cell cycle transcription factor DP-2 {Human (Homo 98.89
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 93.99
d1j5ya165 Putative transcriptional regulator TM1602, N-termi 93.6
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 92.76
d1mkma175 Transcriptional regulator IclR, N-terminal domain 90.97
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 90.42
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 90.01
d2d1ha1109 Hypothetical transcriptional regulator ST1889 {Sul 89.5
d2fbha1137 Transcriptional regulator PA3341 {Pseudomonas aeru 87.18
d1tw3a185 Carminomycin 4-O-methyltransferase {Streptomyces p 86.95
d1p4xa1125 Staphylococcal accessory regulator A homolog, SarS 86.38
d3broa1135 Transcriptional regulator OEOE1854 {Oenococcus oen 85.98
d1qzza192 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 85.15
d1fnna1112 CDC6, C-terminal domain {Archaeon Pyrobaculum aero 84.8
d1ub9a_100 Hypothetical protein PH1061 {Archaeon Pyrococcus h 84.74
d1lvaa364 C-terminal fragment of elongation factor SelB {Moo 83.53
d1jhfa171 LexA repressor, N-terminal DNA-binding domain {Esc 83.35
d2frha1115 Pleiotropic regulator of virulence genes, SarA {St 81.78
d2etha1140 Putative transcriptional regulator TM0816 {Thermot 80.03
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-32  Score=220.76  Aligned_cols=91  Identities=25%  Similarity=0.403  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccHhhhhcCCCCCCCeEEEEeCCCCCeEEecCCCCc
Q 022537          205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQNQTLIAIKAPQASYIEVPDPDEN  284 (295)
Q Consensus       205 ~~~~Lk~El~~L~~~E~~LD~lI~~~~~~L~~Lted~~n~~~aYVT~eDI~~i~~f~~qTviAIKAP~gT~LEVPdP~e~  284 (295)
                      +++.|++|+++|.++|+.||++|++|+++|++|++|++|++|+|||++||++|++|+++||||||||+||+||||+|++.
T Consensus         2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~~i~~f~~~tviaIkAP~gT~LeVPdp~~~   81 (101)
T d2azeb1           2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDSSEN   81 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEECSSC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccCCccCHHHHhhCCCcccceEEEEECCCCCEEeecCCCcc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999885


Q ss_pred             --eeeeecCCCCC
Q 022537          285 --RILVSSKGNIK  295 (295)
Q Consensus       285 --~~l~s~~G~I~  295 (295)
                        ++++|++|||.
T Consensus        82 yqi~lkS~~GpI~   94 (101)
T d2azeb1          82 FQISLKSKQGPID   94 (101)
T ss_dssp             EEEEEECSSSCCE
T ss_pred             EEEEEecCCCCEE
Confidence              68999999993
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} Back     information, alignment and structure
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1fnna1 a.4.5.11 (A:277-388) CDC6, C-terminal domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure