Citrus Sinensis ID: 022552

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MAFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccEEEEEccccccEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEccHHHHHHHccccHHEccccccccccccccccccHHHccccHHHccccccHHHccccEEEccccHHcccccccccccccccccccEEEEccccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccEEEEEcEEEEEEccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
maftatplfsstasssstalhrskfldsdfaapfshdsfhliNFSRRFYEQGICLSRKKNILFAsvngtnavsptplksdqdadyipmphvlidqdsnsdatIVQLSFGDRLGALIDTMNALKDLGLDvakgtvntegsvkQTKFFITRldtgrkvedpdLLERIRLTIINNLlkyhpesseqlamgeafgikapekkldvDIATHihvkedgpkrslLYIETADRPGLLVEIMKIIADvnvdvesaeidteglvakdkfhvsyggaalnSSLSQVLVNCLRYYlrrpetdidsy
Flexible Loop (DISEMBL)
maftatplfsstasssstaLHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAkgtvntegsvkqtkffitrldtgrkvedpdllERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHihvkedgpkrsllYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGaalnsslsQVLVNCLRYYlrrpetdidsy
Low Complexity Region (SEG)
MaftatplfsstasssstalHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Disordered region (IsUnstruct)
************************FLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNA************DYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP*****LAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR*********
Disordered Region (DISOPRED)
*AFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINF*********CLSRKKNILFASVN********************MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMG*****KAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGA********VLVNCLRY************
Disordered Region (DISEMBL)
********************HRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Disordered Region (DISPRO)
*************SSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNG*NAV************YIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRP*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q0J709	283	Unknown protein DS12 from	no	no	0.735	0.766	0.594	1e-72
P83643	283	Unknown protein DS12 from	N/A	no	0.735	0.766	0.594	1e-72
Q7NTY6	856	[Protein-PII] uridylyltra	yes	no	0.213	0.073	0.442	4e-05
Q9AC53	940	[Protein-PII] uridylyltra	yes	no	0.522	0.163	0.288	4e-05
B8GWX0	940	[Protein-PII] uridylyltra	yes	no	0.522	0.163	0.288	4e-05
Q3J5H6	930	[Protein-PII] uridylyltra	yes	no	0.549	0.174	0.271	0.0002
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.301	0.093	0.307	0.0005

>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 168/217 (77%)

Query: 79  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138
           S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + 
Sbjct: 67  SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDS 126

Query: 139 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 198
           + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + 
Sbjct: 127 TGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTEL 186

Query: 199 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 258
           +DVDIATHI + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK 
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246

Query: 259 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           KFHVSY G  L  +L QVL N LRY+LRRP T+  SY
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/217 (59%), Positives = 168/217 (77%)

Query: 79  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138
           S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + 
Sbjct: 67  SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDS 126

Query: 139 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 198
           + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + 
Sbjct: 127 TGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTEL 186

Query: 199 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 258
           +DVDIATHI + +DGP RSLL +ETADRPGLLV+++KII D+N+ V+S E DTEGL+AK 
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246

Query: 259 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           KFHVSY G  L  +L QVL N LRY+LRRP T+  SY
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7NTY6|GLND_CHRVO [Protein-PII] uridylyltransferase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=glnD PE=3 SV=1

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 7/70 (10%)

Query: 218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNS-----S 272
           +L I   DRPGLL  I K++AD  ++V SA+I T G  A+D F VS  GAAL       +
Sbjct: 788 ILSIVAGDRPGLLARIAKVLADYRLNVRSAKIMTLGGRAEDSFQVS--GAALKDDKTALA 845

Query: 273 LSQVLVNCLR 282
           L   L+  LR
Sbjct: 846 LEAALITALR 855

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=glnD PE=3 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 16/170 (9%)

Query: 99  SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRK--V 156
           S+A  V ++  DR G   D   A+  LG +V    V T    +    F  +  TG     
Sbjct: 733 SNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGC 792

Query: 157 EDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKED 212
           E+P  L R+   +      + L   P    +     AF I AP   +D D +    V E 
Sbjct: 793 ENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVEA 851

Query: 213 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262
             +         DRPGLL  + K +AD  + ++SA ID  G  A D F+V
Sbjct: 852 SGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=glnD PE=3 SV=1

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 70/170 (41%), Gaps = 16/170 (9%)

Query: 99  SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRK--V 156
           S+A  V ++  DR G   D   A+  LG +V    V T    +    F  +  TG     
Sbjct: 733 SNAAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDVTGAPFGC 792

Query: 157 EDPDLLERIRLTI----INNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKED 212
           E+P  L R+   +      + L   P    +     AF I AP   +D D +    V E 
Sbjct: 793 ENPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAI-APSVTIDNDASNDATVVEA 851

Query: 213 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262
             +         DRPGLL  + K +AD  + ++SA ID  G  A D F+V
Sbjct: 852 SGR---------DRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYV 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glnD PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 93  IDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT 152
           +D D + DAT    +  D  G       AL  +G +V      T      T  F  +   
Sbjct: 732 LDPDPDRDATRACFALADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDSE 791

Query: 153 GRKVEDPDLLERI-RLT-IINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVK 210
           G   E    + R+ RLT +I+  LK    + E L   +    K  +++      THI   
Sbjct: 792 GSPYE----ISRLPRLTSMIDKTLKGEVVAREALKDRD----KLKKREAQFRFPTHIAFD 843

Query: 211 EDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262
            +G    +++ ++T DRPGLL ++ + +A  N+ + SA I T G    D F+V
Sbjct: 844 NEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYV 896

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 83  ADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ 142
           A ++P P V+ID  ++   T+++++  DR G L D  +AL    L ++   + T G ++ 
Sbjct: 851 AIHVP-PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYG-MRA 908

Query: 143 TKFFITRLDTGRKVEDPDLLERIRLTIINNL 173
              F  R   G K+ DP  L R+R T++ +L
Sbjct: 909 VDVFYVRDLLGMKITDPVRLARLRETLLASL 939

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
449446279	287	PREDICTED: unknown protein DS12 from 2D-	0.959	0.986	0.720	1e-115
449494163	283	PREDICTED: unknown protein DS12 from 2D-	0.945	0.985	0.713	1e-114
388495334	282	unknown [Lotus japonicus]	0.942	0.985	0.719	1e-111
224110178	217	predicted protein [Populus trichocarpa]	0.735	1.0	0.917	1e-110
224097618	218	predicted protein [Populus trichocarpa]	0.738	1.0	0.899	1e-110
356575488	282	PREDICTED: unknown protein DS12 from 2D-	0.850	0.890	0.796	1e-110
356536361	283	PREDICTED: unknown protein DS12 from 2D-	0.850	0.886	0.792	1e-109
15238305	301	ACT domain-containing protein [Arabidops	0.986	0.966	0.702	1e-108
21592963	301	unknown [Arabidopsis thaliana]	0.986	0.966	0.695	1e-107
255560331	214	amino acid binding protein, putative [Ri	0.722	0.995	0.897	1e-107

>gi|449446279|ref|XP_004140899.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/297 (72%), Positives = 247/297 (83%), Gaps = 14/297 (4%)

Query: 1   MAFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLS--RK 58
           M  +++   +S+ +S S    RS+F + +F A   H          R +  G  L+   K
Sbjct: 3   MPTSSSTFIASSYTSPSPFPCRSRFFEPEFVAHVPH----------RCFGGGARLAFLLK 52

Query: 59  KNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDT 118
            NIL AS NG NAVSP  L  DQD+  +PMP VLIDQDS+S+ATIV++SFGDRLGALIDT
Sbjct: 53  WNILSASTNGLNAVSPASLMFDQDS--VPMPIVLIDQDSDSNATIVEVSFGDRLGALIDT 110

Query: 119 MNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 178
           M ALKDLGLDVAKGTV+TEGSVKQTKF++TRLD+GRKVEDPDLLE IRLTIINNLLKYHP
Sbjct: 111 MRALKDLGLDVAKGTVSTEGSVKQTKFYLTRLDSGRKVEDPDLLESIRLTIINNLLKYHP 170

Query: 179 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIA 238
           ESS+QLAMGEAFGI+ PEKKLDVDIATH+HVK DGPKRSLLY+ETADRPGLL+E++K++A
Sbjct: 171 ESSQQLAMGEAFGIQPPEKKLDVDIATHVHVKADGPKRSLLYLETADRPGLLLEVIKMLA 230

Query: 239 DVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           D+N+DVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQV+VNCLRYYLRRPETDIDSY
Sbjct: 231 DINIDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVVVNCLRYYLRRPETDIDSY 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494163|ref|XP_004159466.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Cucumis sativus]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/297 (71%), Positives = 244/297 (82%), Gaps = 18/297 (6%)

Query: 1   MAFTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLS--RK 58
           M  +++   +S+ +S S    RS+F + +F A   H          R +  G  L+   K
Sbjct: 3   MPTSSSTFIASSYTSPSPFPCRSRFFEPEFVAHVPH----------RCFGGGARLAFLLK 52

Query: 59  KNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDT 118
            NIL AS NG NAVSP  L      D +PMP VLIDQDS+S+ATIV++SFGDRLGALIDT
Sbjct: 53  WNILSASTNGLNAVSPASL------DSVPMPIVLIDQDSDSNATIVEVSFGDRLGALIDT 106

Query: 119 MNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP 178
           M ALKDLGLDVAKGTV+TEGSVKQTKF++TRLD+GRKVEDPDLLE IRLTIINNLLKYHP
Sbjct: 107 MRALKDLGLDVAKGTVSTEGSVKQTKFYLTRLDSGRKVEDPDLLESIRLTIINNLLKYHP 166

Query: 179 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIA 238
           ESS+QLAMGEAFGI+ PEKKLDVDIATH+HVK DGPKRSLLY+ETADRPGLL+E++K++A
Sbjct: 167 ESSQQLAMGEAFGIQPPEKKLDVDIATHVHVKADGPKRSLLYLETADRPGLLLEVIKMLA 226

Query: 239 DVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           D+N+DVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQV+VNCLRYYLRRPETDIDSY
Sbjct: 227 DINIDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVVVNCLRYYLRRPETDIDSY 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495334|gb|AFK35733.1| unknown [Lotus japonicus]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/289 (71%), Positives = 234/289 (80%), Gaps = 11/289 (3%)

Query: 9   FSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNG 68
           F++   + S A+H    +    + P   D+F         +     LSR KNIL AS   
Sbjct: 3   FTNAFIAPSFAVHAGSRVSDPLSIPLPSDAF---------FRSRPSLSRNKNILNASAYD 53

Query: 69  TNAVSPTPL--KSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLG 126
            NAV    L  K ++D + +PMP VLIDQDS+S+ATIVQLSFGDRLGALIDTM ALKDLG
Sbjct: 54  LNAVGSASLVSKFNRDHESVPMPMVLIDQDSDSEATIVQLSFGDRLGALIDTMKALKDLG 113

Query: 127 LDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAM 186
           LDV+KGTV+TEGSVKQTKFFIT+ +TGRKVEDPD+LERIRLTII+NLLKYHPESSEQLAM
Sbjct: 114 LDVSKGTVSTEGSVKQTKFFITQSNTGRKVEDPDMLERIRLTIISNLLKYHPESSEQLAM 173

Query: 187 GEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVES 246
           GE FGIKAP KKLD+D AT I VKEDGPKRSLLYIETADRPGLLVEI+K+IADVN+DVES
Sbjct: 174 GEVFGIKAPVKKLDLDFATRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVES 233

Query: 247 AEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           AEIDTEGL+AKDKFHVSYGGAALNSS+SQVLVNCLRYYLR PETDIDSY
Sbjct: 234 AEIDTEGLIAKDKFHVSYGGAALNSSMSQVLVNCLRYYLRTPETDIDSY 282

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110178|ref|XP_002315438.1| predicted protein [Populus trichocarpa] gi|222864478|gb|EEF01609.1| predicted protein [Populus trichocarpa]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/217 (91%), Positives = 208/217 (95%)

Query: 79  SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138
           S+QDAD +PMP VLIDQDS+SDATIVQLSFGDRLGALIDTMNALK LGLDVAKGTV T+G
Sbjct: 1   SEQDADLVPMPVVLIDQDSDSDATIVQLSFGDRLGALIDTMNALKHLGLDVAKGTVLTDG 60

Query: 139 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 198
            VKQTKFFITRLDTGRKVEDPD+LERIRLTIINNLLKYHPESSE+LAMGEAFGIKAPEKK
Sbjct: 61  PVKQTKFFITRLDTGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPEKK 120

Query: 199 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 258
           LDVDI TH+HVKEDGPKRSLL IETADRPGLLVEI+KIIADVN+DVESAEIDTEGLVAKD
Sbjct: 121 LDVDITTHVHVKEDGPKRSLLCIETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAKD 180

Query: 259 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           KFHVSY GAAL SSLSQVLVNCLRYYLRRPETDIDSY
Sbjct: 181 KFHVSYRGAALTSSLSQVLVNCLRYYLRRPETDIDSY 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097618|ref|XP_002311013.1| predicted protein [Populus trichocarpa] gi|222850833|gb|EEE88380.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/218 (89%), Positives = 210/218 (96%)

Query: 78  KSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE 137
           K +QDAD +P+P VLIDQDS+S++TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTV TE
Sbjct: 1   KPEQDADGVPIPVVLIDQDSDSESTIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVLTE 60

Query: 138 GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEK 197
           G VKQTKFFITRLD+GRKVEDPD+LERIRLTIINNLLKYHPESSE+LAMGEAFGIKAPEK
Sbjct: 61  GPVKQTKFFITRLDSGRKVEDPDMLERIRLTIINNLLKYHPESSERLAMGEAFGIKAPEK 120

Query: 198 KLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK 257
           KLDVDI TH+HVKEDGPKRSLL +ETADRPGLLVEI+KIIADVN+DVESAEIDTEGLVAK
Sbjct: 121 KLDVDITTHVHVKEDGPKRSLLCVETADRPGLLVEIIKIIADVNIDVESAEIDTEGLVAK 180

Query: 258 DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETD +SY
Sbjct: 181 DKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDTESY 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575488|ref|XP_003555872.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/251 (79%), Positives = 219/251 (87%)

Query: 45  SRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIV 104
           S  F+     LSR KNIL+AS    NAV    L+S  + D +PMP VLIDQ+S+S+ATIV
Sbjct: 32  SDAFFRSPTSLSRDKNILYASAYDLNAVGSASLQSGDNPDSLPMPIVLIDQESDSEATIV 91

Query: 105 QLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLER 164
           QLSFG+RLGAL+DTM ALKDLGLDV+KGTV+TEG VKQTKFFIT+ DTGRKVEDPD+LER
Sbjct: 92  QLSFGNRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLER 151

Query: 165 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA 224
           IRLTIINNLLKYHPESSE LAMGE FGIKAP+KKLD DI T I VKEDGPKRSLLYIETA
Sbjct: 152 IRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETA 211

Query: 225 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 284
           DRPGLLVEI+K+IADVN+DVESAEIDTEGLVAKD FHVSYGGAALNSS+SQVLVNCLRYY
Sbjct: 212 DRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMSQVLVNCLRYY 271

Query: 285 LRRPETDIDSY 295
           LR PETDIDSY
Sbjct: 272 LRTPETDIDSY 282

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536361|ref|XP_003536707.1| PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like [Glycine max]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/251 (79%), Positives = 217/251 (86%)

Query: 45  SRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIV 104
           S  F+     LSR KN L AS    NAV    L+S  + D +PMP VLIDQ+S+S+ATIV
Sbjct: 33  SDAFFRSPTSLSRDKNFLKASAYDLNAVGSASLQSGDNPDSVPMPIVLIDQESDSEATIV 92

Query: 105 QLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLER 164
           QLSFGDRLGAL+DTM ALKDLGLDV+KGTV+TEG VKQTKFFIT+ DTGRKVEDPD+LER
Sbjct: 93  QLSFGDRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLER 152

Query: 165 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA 224
           IRLTIINNLLKYHPESSE LAMGE FGIKAP+KKLD DI T I VKEDGPKRSLLYIETA
Sbjct: 153 IRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETA 212

Query: 225 DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY 284
           DRPGLLVEI+K+IADVN+DVESAEIDTEGLVAKD FHVSYGGAALNSS++QVLVNCLRYY
Sbjct: 213 DRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMAQVLVNCLRYY 272

Query: 285 LRRPETDIDSY 295
           LR PETDIDSY
Sbjct: 273 LRTPETDIDSY 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238305|ref|NP_196094.1| ACT domain-containing protein [Arabidopsis thaliana] gi|7413536|emb|CAB86016.1| putative protein [Arabidopsis thaliana] gi|9758449|dbj|BAB08978.1| unnamed protein product [Arabidopsis thaliana] gi|18252933|gb|AAL62393.1| putative protein [Arabidopsis thaliana] gi|21389645|gb|AAM48021.1| putative protein [Arabidopsis thaliana] gi|332003394|gb|AED90777.1| ACT domain-containing protein [Arabidopsis thaliana] gi|347949480|gb|AEP31953.1| ACT domain-containing protein [Arabidopsis thaliana]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/296 (70%), Positives = 241/296 (81%), Gaps = 5/296 (1%)

Query: 3   FTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRK--KN 60
           F+ T   SS AS  S+A+ R     +  A+P    S  L +  R+F    + L  K  KN
Sbjct: 8   FSVTQFSSSLASRPSSAISRQTRFPAQIASP--DLSPALFDDRRKFVGGVMSLLTKSIKN 65

Query: 61  ILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTM 119
            ++AS+N  + A +P+  KS+ D D +PMP V+IDQD++ +ATIVQLSFG+RLGALIDTM
Sbjct: 66  RVYASINSIDSAATPSYPKSEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDTM 125

Query: 120 NALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE 179
            ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGRKVEDPDLLE+IRLTIINNLLKYHPE
Sbjct: 126 RALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGRKVEDPDLLEQIRLTIINNLLKYHPE 185

Query: 180 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIAD 239
            SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGPKRSLL IETADRPGL+VE++K++AD
Sbjct: 186 CSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVIETADRPGLVVEMIKVMAD 245

Query: 240 VNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           VN+DVESAEIDTEGLVAKDKFHVSY G ALN SLSQVLVNCLRY+LRRPETDIDSY
Sbjct: 246 VNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQVLVNCLRYFLRRPETDIDSY 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592963|gb|AAM64912.1| unknown [Arabidopsis thaliana]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/296 (69%), Positives = 239/296 (80%), Gaps = 5/296 (1%)

Query: 3   FTATPLFSSTASSSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRK--KN 60
           F+ T   SS  S  S+A+ R     +   +P    S  L +  R+F    + L  K  KN
Sbjct: 8   FSVTQFSSSITSRPSSAISRQTRFPAQITSP--DLSPALFDDRRKFVGGVMSLLTKSIKN 65

Query: 61  ILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTM 119
            ++AS+N  + A +P+  KS+ D D +PMP V+IDQD++ +ATIVQLSFG+RLGALIDTM
Sbjct: 66  RVYASINSIDSAATPSYPKSEDDDDVVPMPMVMIDQDADPEATIVQLSFGNRLGALIDTM 125

Query: 120 NALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE 179
            ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGRKVEDPDLLE+IRLTIINNLLKYHPE
Sbjct: 126 RALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGRKVEDPDLLEQIRLTIINNLLKYHPE 185

Query: 180 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIAD 239
            SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGPKRSLL IETADRPGL+VE++K++AD
Sbjct: 186 CSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVIETADRPGLVVEMIKVMAD 245

Query: 240 VNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           VN+DVESAEIDTEGLVAKDKFHVSY G ALN SLSQVLVNCLRY+LRRPETDIDSY
Sbjct: 246 VNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQVLVNCLRYFLRRPETDIDSY 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560331|ref|XP_002521182.1| amino acid binding protein, putative [Ricinus communis] gi|223539629|gb|EEF41213.1| amino acid binding protein, putative [Ricinus communis]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/214 (89%), Positives = 207/214 (96%), Gaps = 1/214 (0%)

Query: 82  DADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK 141
           DAD +PMP +LIDQDS+SDAT VQ+SFGDRLGALIDTM ALKDLGLDVAKG+V TEGSVK
Sbjct: 2   DAD-VPMPVLLIDQDSDSDATSVQVSFGDRLGALIDTMKALKDLGLDVAKGSVLTEGSVK 60

Query: 142 QTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDV 201
           Q KFFITRLD+GRKVEDPD+LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPE+KLDV
Sbjct: 61  QIKFFITRLDSGRKVEDPDMLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPERKLDV 120

Query: 202 DIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFH 261
           DIATHIHVK+DGPKRSLLYIETADRPGLLVE++KI+AD+NVDVESAEIDTEGLVAKDKFH
Sbjct: 121 DIATHIHVKDDGPKRSLLYIETADRPGLLVEMIKIMADINVDVESAEIDTEGLVAKDKFH 180

Query: 262 VSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
           VSY GAALNSS+SQVLVNCLRYYLRRPETD+DSY
Sbjct: 181 VSYRGAALNSSMSQVLVNCLRYYLRRPETDVDSY 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.847	0.830	0.767	2.2e-98
TAIR|locus:2015616	290	ACR11 "ACT domain repeats 11"	0.735	0.748	0.649	8.6e-72
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.271	0.175	0.296	5.7e-09
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.271	0.175	0.308	5.3e-08
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.274	0.180	0.268	2.2e-07
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.281	0.191	0.285	7.5e-07
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.271	0.181	0.333	2.1e-06
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.281	0.174	0.273	4.2e-06
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.376	0.245	0.243	1.2e-05
TIGR_CMR|SPO_0397	908	SPO_0397 "protein-P-II uridyly	0.555	0.180	0.285	0.00013

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 195/254 (76%), Positives = 224/254 (88%)

Query:    46 RRFYEQGIC--LSRK-KNILFASVNGTN-AVSPTPLKSDQDADYIPMPHVLIDQDSNSDA 101
             RR +  G+   L++  KN ++AS+N  + A +P+  KS+ D D +PMP V+IDQD++ +A
Sbjct:    48 RRKFVGGVMSLLTKSIKNRVYASINSIDSAATPSYPKSEDDDDVVPMPMVMIDQDADPEA 107

Query:   102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDL 161
             TIVQLSFG+RLGALIDTM ALKDLGLDV KGTV+TEGS+KQTKF IT+ DTGRKVEDPDL
Sbjct:   108 TIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSITKRDTGRKVEDPDL 167

Query:   162 LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYI 221
             LE+IRLTIINNLLKYHPE SEQLAMGE FGIKAPEKK+DVDIATHIHVKEDGPKRSLL I
Sbjct:   168 LEQIRLTIINNLLKYHPECSEQLAMGETFGIKAPEKKIDVDIATHIHVKEDGPKRSLLVI 227

Query:   222 ETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCL 281
             ETADRPGL+VE++K++ADVN+DVESAEIDTEGLVAKDKFHVSY G ALN SLSQVLVNCL
Sbjct:   228 ETADRPGLVVEMIKVMADVNIDVESAEIDTEGLVAKDKFHVSYQGQALNRSLSQVLVNCL 287

Query:   282 RYYLRRPETDIDSY 295
             RY+LRRPETDIDSY
Sbjct:   288 RYFLRRPETDIDSY 301

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2015616 ACR11 "ACT domain repeats 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 141/217 (64%), Positives = 175/217 (80%)

Query:    79 SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG 138
             S  D+D +P P V+IDQDS+ DAT+++++FGDRLGAL+DTMNALK+LGL+V K  V  + 
Sbjct:    74 SAADSDKVPTPVVIIDQDSDPDATVLEVTFGDRLGALLDTMNALKNLGLNVVKANVYLDS 133

Query:   139 SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKK 198
             S K  KF ITR D+GRKVEDP+LLE IRLT+INNLL++HPESS QLAMG AFG+  P + 
Sbjct:   134 SGKHNKFAITRADSGRKVEDPELLEAIRLTVINNLLEFHPESSSQLAMGAAFGVLPPTEP 193

Query:   199 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 258
             +DVDIATHI +++DGP RSLL+IE+ADRPGLLVE++KII+D++V VES E DTEGL+AK 
Sbjct:   194 IDVDIATHITIEDDGPDRSLLFIESADRPGLLVELVKIISDISVAVESGEFDTEGLLAKV 253

Query:   259 KFHVSYGGAALNSSLSQVLVNCLRYYLRRPETDIDSY 295
             KFHVSY   AL   L QVL N LRY+LRRP TD  S+
Sbjct:   254 KFHVSYRNKALIKPLQQVLANSLRYFLRRPSTDESSF 290

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query:    89 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 148
             P V+ID +   D T++++   ++ G L++ +  L +L L + K  ++++G      F +T
Sbjct:    25 PRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYISSDGGWFMDVFNVT 84

Query:   149 RLDTGRKVEDPDLLERIRLTI 169
               D G KV D  +LE IR ++
Sbjct:    85 DQD-GNKVTDEIVLEYIRKSL 104

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
 Identities = 25/81 (30%), Positives = 45/81 (55%)

Query:    89 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 148
             P V+ID DS   AT++++   +  G L++ +  L DL L + K  ++++G      F +T
Sbjct:    25 PRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYISSDGGWFMDVFNVT 84

Query:   149 RLDTGRKVEDPDLLERIRLTI 169
               D G KV D  +L+ I+ ++
Sbjct:    85 DQD-GNKVTDEVVLDYIQKSL 104

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 22/82 (26%), Positives = 45/82 (54%)

Query:    88 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI 147
             MP V+ID     ++T+V++      G L++++  L D+ L + K  ++++G      F +
Sbjct:    19 MPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISSDGKWNMDVFHV 78

Query:   148 TRLDTGRKVEDPDLLERIRLTI 169
             + L+ G K+ D +L+  I  +I
Sbjct:    79 SDLN-GDKLTDENLIRYIEKSI 99

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
 Identities = 24/84 (28%), Positives = 48/84 (57%)

Query:    89 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 148
             P V+ID +++ DAT++Q+   ++ G L++ +  L D+ L + K  ++++G      F + 
Sbjct:    16 PRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYISSDGGWFMDVFKVI 75

Query:   149 RLDTGRKVEDPDLLERIRLTIINN 172
               D G K+ D  +L+ I+  I +N
Sbjct:    76 DQD-GNKIRDTQVLDYIQKRIESN 98

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 27/81 (33%), Positives = 44/81 (54%)

Query:    89 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 148
             P V+ID    S ATIV++    R G L++ +  L DL L + K  ++++G+     F +T
Sbjct:    20 PRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAYISSDGTWNMDVFHVT 79

Query:   149 RLDTGRKVEDPDLLERIRLTI 169
              L+ G K+ D  +L  I  +I
Sbjct:    80 DLN-GNKLNDQSVLRYIEQSI 99

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 23/84 (27%), Positives = 46/84 (54%)

Query:    89 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 148
             P V +D DS+ + T++++   ++ G L+D +  L DL L ++K  ++++G      F +T
Sbjct:    24 PRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLDLVISKCYISSDGEWFMDVFHVT 83

Query:   149 RLDTGRKVEDPDLLERIRLTIINN 172
                 G K+ D  L+  I+  I ++
Sbjct:    84 D-QLGNKLTDRSLILYIQQAICSS 106

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
 Identities = 28/115 (24%), Positives = 54/115 (46%)

Query:    89 PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 148
             P V ID  S  + T+V++   ++ G L++ +  L DL L + K  ++++G      F +T
Sbjct:    23 PSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLDLTITKAYISSDGGWFMDVFHVT 82

Query:   149 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDI 203
                 G KV D   ++ I   ++    K H  +S+    G+  G+ +      ++I
Sbjct:    83 D-QQGNKVTDSKTIDYIE-KVLGP--KGHASASQNTWPGKRVGVHSLGDHTSIEI 133

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TIGR_CMR|SPO_0397 SPO_0397 "protein-P-II uridylyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
 Identities = 50/175 (28%), Positives = 79/175 (45%)

Query:    91 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDV--AKGTVNTEGSVKQTKFFIT 148
             + +D D + DAT    +  D  G       AL  +G +V  A+     +G V    F+I 
Sbjct:   707 IRLDPDEDRDATRACFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDA-FWIQ 765

Query:   149 RLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH 208
               + G   E   L  R+   I+  L K    + + L   +   IK  EK  +V   THI 
Sbjct:   766 DAE-GHPYEAARL-PRLSQMILKTL-KGEVVARDALKSRDK--IKKREKAFNVP--THIT 818

Query:   209 VKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262
                +G    +++ ++T DRPGLL ++ + +A  NV + +A I T G    D F+V
Sbjct:   819 FDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYV 873

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0008773 "[protein-PII

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.3434.1 hypothetical protein (217 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	9e-08
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-07
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	9e-07
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-05
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	2e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	3e-04
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	3e-04
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	7e-04
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.001
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	0.003
pfam01842	66	pfam01842, ACT, ACT domain	0.003
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	0.004

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 11/200 (5%)

Query: 82  DADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT-EGSV 140
            A     P  LID    S  T V +   D+ G       AL  L L V    VNT +  V
Sbjct: 649 RALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGV 708

Query: 141 KQTKFFITRLDTGRKVEDPDLLERIRLT--IINNLLKYHPESSEQLAMGEAFGIKAPEKK 198
               F +  L       +    E ++    ++  L K     +          ++     
Sbjct: 709 ALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPD--TISARRARRRRLQHFAVP 766

Query: 199 LDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD 258
             V I           K +++ +   DRPGLL  + + + ++ + ++SA+I T G  A+D
Sbjct: 767 PRVTILNTA-----SRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAED 821

Query: 259 KFHVS-YGGAALNSSLSQVL 277
            F+V+   G  L     Q L
Sbjct: 822 VFYVTDLFGLKLTDEEEQRL 841

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 34/47 (72%)

Query: 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263
           ++L +   DRPGLL ++ +++A++ +++ SA+I T G  A+D F+V+
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVT 47

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 45.2 bits (108), Expect = 9e-07
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQ 275
           +++ +   DRPGLL +I +++AD+ +++  A I T G  A D F+V+   G  L+     
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIA 60

Query: 276 VLVNCLR 282
            L   L 
Sbjct: 61  RLEEALE 67

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 145 FFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIA 204
           F+I     GR  ++P  L R+    I + L       E LA  +    K   +   V   
Sbjct: 777 FWIQDAF-GRDEDEPRRLARLA-KAIEDALSGEVRLPEALA--KRTKPKKRARAFHV--P 830

Query: 205 THIHVKEDGPKR-SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263
             + +  +   R +++ +   DRPGLL ++ + ++D+N+++ SA I T G  A D F+V+
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV 262
             +++L +   DRPGLL  +  + AD+ + + SA+I T G   +D F V
Sbjct: 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Length = 867

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 89  PHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT 148
           P V ID ++++  T+++++  DR G L D   AL DL L++A   + T G      F++T
Sbjct: 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT 890

Query: 149 RLDTGRKVEDPDLLERIR 166
            L  G K+ +      IR
Sbjct: 891 DL-FGLKITNEARQAAIR 907

Length = 931

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)

Query: 211 EDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALN 270
           ++  +  +L +   DRPGLL  I +++A+  V V +A+I+T G   +D F +   G+ L+
Sbjct: 781 DERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID--GSGLS 838

Query: 271 SSLSQV 276
            +  Q+
Sbjct: 839 DNRLQI 844

Length = 856

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/53 (33%), Positives = 27/53 (50%)

Query: 87  PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS 139
             P VL    ++ DAT++++   DR G L     AL+  G+DV    V T G+
Sbjct: 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGA 745

Length = 774

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263
           L + T DR GLL ++ ++  +  + V  AEI T+G +A + F+V+
Sbjct: 4   LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 251
           + +E  DRPGLL +I  +IA+  +++ S    T
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRT 33

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 213 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA 268
            P  ++L +  ADRPGLL  + + +    VDV  A + T G    D F+V+     
Sbjct: 704 SPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG 759

Length = 774

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 253
           L IE  DRPGLL +I  +I++   ++ S   +++ 
Sbjct: 7   LEIEAIDRPGLLADITTVISNEKANILSVNAESKD 41

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 118 TMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKV-EDPDLLERIRLTIINNLLKY 176
           T+ A+  L L++    + T  S      +I   D G  + ++P  +E+IR  +   L   
Sbjct: 721 TVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR-- 778

Query: 177 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMK 235
           +P+             + P +       T + +  D  +  ++L I   DRPGLL  I +
Sbjct: 779 NPDDYP-----TIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR 833

Query: 236 IIADVNVDVESAEIDTEGLVAKDKFHVS 263
           I  + ++ +++A+I T G   +D F ++
Sbjct: 834 IFLEFDLSLQNAKIATLGERVEDVFFIT 861

Length = 895

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK 257
           ++L +   DRPGLL E+   +AD  +++ES    T G  A 
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAG 41

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG 253
           L +   DRPGLL +++ ++A+  +++ S E  T G
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PRK05007	884	PII uridylyl-transferase; Provisional	100.0
PRK01759	854	glnD PII uridylyl-transferase; Provisional	100.0
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.97
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.97
PRK04374	869	PII uridylyl-transferase; Provisional	99.96
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.96
PRK05092	931	PII uridylyl-transferase; Provisional	99.96
PRK03059	856	PII uridylyl-transferase; Provisional	99.96
PRK03381	774	PII uridylyl-transferase; Provisional	99.95
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.87
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.83
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.83
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.71
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.68
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.65
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.64
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.63
PRK05007	884	PII uridylyl-transferase; Provisional	99.62
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.62
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.61
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.61
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.6
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.6
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.58
PRK04374	869	PII uridylyl-transferase; Provisional	99.56
PRK03059	856	PII uridylyl-transferase; Provisional	99.55
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.55
PRK05092	931	PII uridylyl-transferase; Provisional	99.54
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.51
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.45
PRK03381	774	PII uridylyl-transferase; Provisional	99.41
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.38
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.36
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.33
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.32
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.31
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.29
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.27
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.04
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.0
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	98.87
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.68
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.5
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.48
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.46
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.44
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.39
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.36
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.33
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.07
PRK00194	90	hypothetical protein; Validated	98.01
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.01
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.01
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.99
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.98
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.96
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	97.94
PRK00194	90	hypothetical protein; Validated	97.93
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.9
COG4747	142	ACT domain-containing protein [General function pr	97.79
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.69
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.62
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.61
PRK11589	190	gcvR glycine cleavage system transcriptional repre	97.58
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.52
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.48
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.45
COG3830	90	ACT domain-containing protein [Signal transduction	97.41
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.41
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.36
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.36
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.35
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.33
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.3
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.25
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.24
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.23
COG3830	90	ACT domain-containing protein [Signal transduction	97.21
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.21
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	97.18
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.17
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.17
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.16
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	97.14
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.14
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.11
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.98
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.98
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.96
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.95
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.94
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.93
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.92
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.89
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	96.89
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.88
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.87
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.83
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.8
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.77
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.73
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.72
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.72
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.71
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.7
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.64
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.61
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.58
PRK08577	136	hypothetical protein; Provisional	96.55
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.55
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.54
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.54
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.52
cd02116	60	ACT ACT domains are commonly involved in specifica	96.52
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.46
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.45
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.44
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.41
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.4
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.39
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	96.33
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.33
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.3
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.3
PRK08577	136	hypothetical protein; Provisional	96.3
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.25
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.25
PRK04435	147	hypothetical protein; Provisional	96.23
PRK07334	403	threonine dehydratase; Provisional	96.03
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.01
cd02116	60	ACT ACT domains are commonly involved in specifica	95.99
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	95.9
PRK07334	403	threonine dehydratase; Provisional	95.84
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.81
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	95.81
PRK04435	147	hypothetical protein; Provisional	95.67
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.67
PRK00227	693	glnD PII uridylyl-transferase; Provisional	95.63
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	95.63
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	95.56
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.43
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.33
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.19
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.18
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.09
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	95.05
PRK06635	404	aspartate kinase; Reviewed	95.0
PRK11899	279	prephenate dehydratase; Provisional	94.92
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	94.77
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.71
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.67
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.6
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.52
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	94.52
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.44
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	94.32
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	94.11
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	94.07
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	94.01
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	93.81
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	93.79
PRK06291	465	aspartate kinase; Provisional	93.46
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	93.38
PRK08210	403	aspartate kinase I; Reviewed	93.32
COG1707	218	ACT domain-containing protein [General function pr	93.28
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	93.03
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	93.0
PRK07431	587	aspartate kinase; Provisional	92.84
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	92.36
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	92.29
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	92.21
PRK08818	370	prephenate dehydrogenase; Provisional	92.16
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	92.06
PRK09034	454	aspartate kinase; Reviewed	91.85
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	91.77
COG1707	218	ACT domain-containing protein [General function pr	91.59
COG4747	142	ACT domain-containing protein [General function pr	91.46
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	91.36
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	91.3
PRK08198	404	threonine dehydratase; Provisional	91.09
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.09
PRK06382	406	threonine dehydratase; Provisional	91.07
PRK06382	406	threonine dehydratase; Provisional	90.89
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	90.78
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	90.5
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	90.49
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	90.45
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	90.4
PRK11898	283	prephenate dehydratase; Provisional	90.31
PRK06349	426	homoserine dehydrogenase; Provisional	90.25
PRK06545	359	prephenate dehydrogenase; Validated	90.07
PRK09224	504	threonine dehydratase; Reviewed	89.79
PRK07431	587	aspartate kinase; Provisional	89.74
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	89.66
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	89.64
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.08
PLN02317	382	arogenate dehydratase	88.93
PRK09181	475	aspartate kinase; Validated	88.72
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	88.56
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	88.36
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	88.2
PRK06545	359	prephenate dehydrogenase; Validated	88.2
PLN02551	521	aspartokinase	88.04
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	87.69
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	87.66
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	87.34
PRK12483	521	threonine dehydratase; Reviewed	87.13
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	86.77
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	86.66
PLN02550	591	threonine dehydratase	86.35
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	85.77
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	85.61
PRK11899	279	prephenate dehydratase; Provisional	84.94
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	84.11
PRK06349	426	homoserine dehydrogenase; Provisional	83.0
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	82.68
PRK09084	448	aspartate kinase III; Validated	82.67
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	82.0
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	81.41
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	81.29
COG2150	167	Predicted regulator of amino acid metabolism, cont	80.42
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	80.36
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	80.34

>PRK05007 PII uridylyl-transferase; Provisional

Probab=100.00  E-value=2.8e-32  Score=287.16  Aligned_cols=191  Identities=24%  Similarity=0.290  Sum_probs=167.2

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552           87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  165 (295)
Q Consensus        87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L  165 (295)
                      .+|.|.+++..+.++++|+|+++||||||++||++|+.+|+||++|+|+|+++|. +|+|+|++. +|.++ +++++++|
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~-~~~~~~~I  764 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPL-SQDRHQVI  764 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCC-CHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999965 799999997 78877 46799999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022552          166 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV  244 (295)
Q Consensus       166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I  244 (295)
                      +..|.++|.+.... .. .    .+  +.+++...+.++++|.|+|+.+ ++|+|+|.|.|||||||+|+++|.++|++|
T Consensus       765 ~~~L~~aL~~~~~~-~~-~----~~--~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I  836 (884)
T PRK05007        765 RKALEQALTQSSPQ-PP-K----PR--RLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISL  836 (884)
T ss_pred             HHHHHHHHcCCCCC-cc-c----cc--ccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEE
Confidence            99999999763211 11 1    11  1234556778899999998875 499999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCC
Q 022552          245 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRR  287 (295)
Q Consensus       245 ~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~~  287 (295)
                      ++|||+|.|++|+|+|||++ +|.+++++++++|+++|+++|..
T Consensus       837 ~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        837 HGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALNP  880 (884)
T ss_pred             EEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998 89999966899999999999854

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=3.3e-32  Score=285.71  Aligned_cols=189  Identities=18%  Similarity=0.242  Sum_probs=164.1

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHHH
Q 022552           87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERI  165 (295)
Q Consensus        87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~L  165 (295)
                      .+|.|.++++.+.++++|+|+++||||||++|+++|+.+|+||++|+|+|+.++ ++|+|+|++. +|.++. ++++++|
T Consensus       663 ~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~-~~~~~~l  740 (854)
T PRK01759        663 GDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLE-FDRRRQL  740 (854)
T ss_pred             CCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCC-HHHHHHH
Confidence            468888999999999999999999999999999999999999999999996554 5899999997 888874 6899999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022552          166 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV  244 (295)
Q Consensus       166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I  244 (295)
                      +..|.++|.+.. .....      .  +.+++...|.++++|.|+|+.+ .+|+|+|.|.|||||||+|+++|.++|++|
T Consensus       741 ~~~L~~aL~~~~-~~~~~------~--~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i  811 (854)
T PRK01759        741 EQALTKALNTNK-LKKLN------L--EENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNL  811 (854)
T ss_pred             HHHHHHHHcCCC-Ccchh------c--cccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence            999999997632 11100      1  1223455678899999998875 499999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 022552          245 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR  286 (295)
Q Consensus       245 ~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~  286 (295)
                      ++|||+|.|++|+|+|||++ +|++++++.+++|+++|+++|.
T Consensus       812 ~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l~  854 (854)
T PRK01759        812 LNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNLS  854 (854)
T ss_pred             EEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHhC
Confidence            99999999999999999998 8999998866999999998873

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.97  E-value=1.5e-29  Score=266.18  Aligned_cols=194  Identities=22%  Similarity=0.292  Sum_probs=165.7

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHH
Q 022552           86 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLER  164 (295)
Q Consensus        86 ~~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~  164 (295)
                      .+.|.|.+++....++++|+|+++||||||++|+++|+.+|+||++|+|+|+.++ ++|+|+|++. +|.++.+++++++
T Consensus       653 ~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~  731 (850)
T TIGR01693       653 SGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQE  731 (850)
T ss_pred             CCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHH
Confidence            3468899988777899999999999999999999999999999999999977655 5899999996 7888877788999


Q ss_pred             HHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022552          165 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD  243 (295)
Q Consensus       165 L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~  243 (295)
                      |++.|.++|.+.. .....+.    ++.+.+++...+.++++|.|+|+.+ ++|+|+|.|.|||||||+|+++|+++|++
T Consensus       732 i~~~L~~~L~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~  806 (850)
T TIGR01693       732 LLQGLVDVLAGLA-KDPDTIS----ARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLS  806 (850)
T ss_pred             HHHHHHHHHcCCC-ccccccc----cccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCe
Confidence            9999999997632 1111111    1111234556778899999998875 49999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022552          244 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       244 I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      |++|+|+|.|++++|+|||++ .|.|++++++++|+++|+++|
T Consensus       807 i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       807 IQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             EEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999998 899999888899999999886

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=2.8e-29  Score=264.59  Aligned_cols=198  Identities=21%  Similarity=0.316  Sum_probs=167.2

Q ss_pred             CCcEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCC-ChHH
Q 022552           87 PMPHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVE-DPDL  161 (295)
Q Consensus        87 ~~p~V~i~~~~~---~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~-d~~~  161 (295)
                      +.|.|.+....+   .++++|+|+++||||||++||++|+.+|+||++|+|+|+++|+ +|+|+|++. +|.++. ++++
T Consensus       687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r  765 (895)
T PRK00275        687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPAR  765 (895)
T ss_pred             CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHH
Confidence            357777877665   5899999999999999999999999999999999999998876 799999997 787753 4689


Q ss_pred             HHHHHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhC
Q 022552          162 LERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADV  240 (295)
Q Consensus       162 le~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~  240 (295)
                      +++|+..|.++|.+.. .+...++    +  +.+++...+.+++.|.++++.+ ++|+|+|.|.||||||++|+.+|+++
T Consensus       766 ~~~i~~~L~~~L~~~~-~~~~~~~----~--~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~  838 (895)
T PRK00275        766 IEQIREGLTEALRNPD-DYPTIIQ----R--RVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEF  838 (895)
T ss_pred             HHHHHHHHHHHHcCCC-ccchhhh----h--hhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHC
Confidence            9999999999997632 2222332    1  2234455677889999887764 59999999999999999999999999


Q ss_pred             CceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCcc
Q 022552          241 NVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETDI  292 (295)
Q Consensus       241 gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L~~~~~~~  292 (295)
                      |++|++|+|.|.|+++.|+|||++ +|.++.++ ++++|+++|.++|..+....
T Consensus       839 ~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~  892 (895)
T PRK00275        839 DLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEKD  892 (895)
T ss_pred             CCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcccccc
Confidence            999999999999999999999998 89999886 88999999999997665443

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.4e-28  Score=255.34  Aligned_cols=188  Identities=20%  Similarity=0.217  Sum_probs=159.7

Q ss_pred             CcEEEEee-cCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552           88 MPHVLIDQ-DSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  165 (295)
Q Consensus        88 ~p~V~i~~-~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L  165 (295)
                      .|.|.+.. ....+.+.|+|+++||||||++||++|+.+|+||++|+|+|+.+|+ +|+|+|+++ +|..   ++++++|
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i  751 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRL  751 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHH
Confidence            56666654 6777999999999999999999999999999999999999998876 799999996 5653   3678899


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022552          166 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDV  244 (295)
Q Consensus       166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I  244 (295)
                      +..|.++|.+. ..... +.    ++ +.+++...|.++++|.++++.+ ++|+|+|.|.||||||++|+.+|+++|++|
T Consensus       752 ~~~l~~~l~~~-~~~~~-~~----~~-~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I  824 (869)
T PRK04374        752 AAALRQVLAGD-LQKVR-PA----RR-AVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRV  824 (869)
T ss_pred             HHHHHHHHcCC-CCccc-cc----cc-cCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeE
Confidence            99999999763 22111 21    11 2245566788999999988664 699999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcC
Q 022552          245 ESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLR  286 (295)
Q Consensus       245 ~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~  286 (295)
                      ++|+|+|.|++++|+|||++ +|.++.++.+++|+++|+++|.
T Consensus       825 ~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~  867 (869)
T PRK04374        825 HDARIATFGERAEDQFQITDEHDRPLSESARQALRDALCACLD  867 (869)
T ss_pred             EEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence            99999999999999999998 8899888866999999999884

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-28  Score=249.75  Aligned_cols=193  Identities=27%  Similarity=0.322  Sum_probs=169.3

Q ss_pred             CCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHH
Q 022552           86 IPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLER  164 (295)
Q Consensus        86 ~~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~  164 (295)
                      ..+|.|.+......+.++|+|+++|+|.||+.+|+.+...|+||++|+|+|+.+|+ +|+|+|+++ +|.++. +++...
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~  746 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAA  746 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHH
Confidence            45788998887778999999999999999999999999999999999999999985 799999997 888775 678788


Q ss_pred             HHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCCc-eEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022552          165 IRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPK-RSLLYIETADRPGLLVEIMKIIADVNVD  243 (295)
Q Consensus       165 L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~-~t~IeV~a~DRPGLL~dIt~~L~~~gI~  243 (295)
                      ++..|.+++.++...  +      +.+.+.+++..+|+++|+|.|.++.++ .|+|||.+.||||||++|+++|+++|++
T Consensus       747 ~~~~l~~~l~s~~~~--~------~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~  818 (867)
T COG2844         747 LRGELIEALLSGKAQ--P------PRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLS  818 (867)
T ss_pred             HHHHHHHHHhcCCCC--C------ccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccc
Confidence            888888888764321  1      122255677789999999999988765 9999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHcCCC
Q 022552          244 VESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYLRRP  288 (295)
Q Consensus       244 I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L~~~  288 (295)
                      |++|+|+|.|++|+|+|||++ .|++++.+.++.+.+.|.+++...
T Consensus       819 i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~  864 (867)
T COG2844         819 LHSAKITTFGERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN  864 (867)
T ss_pred             eeeeeeccccccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999998 899998888889999998887643

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=6.2e-28  Score=255.84  Aligned_cols=198  Identities=21%  Similarity=0.305  Sum_probs=167.6

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552           87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  165 (295)
Q Consensus        87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L  165 (295)
                      .++.|.+.+....++++|+|+++||||||++|+++|+.+|+||++|+|+|+.+++ +|+|+|++. +|.+..+++++++|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHH
Confidence            4678889888888999999999999999999999999999999999999987776 799999996 78776677899999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCC-cccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCce
Q 022552          166 RLTIINNLLKYHPESSEQLAMGEAFGIKAP-EKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVD  243 (295)
Q Consensus       166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~-~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~  243 (295)
                      ++.|.+++.+. ..+...+.    ++ ..+ .+...|.+++.|.|+++.+ ++|+|+|.+.||||||++|+++|+++|+|
T Consensus       797 ~~~L~~~l~~~-~~~~~~~~----~r-~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~  870 (931)
T PRK05092        797 AKAIEDALSGE-VRLPEALA----KR-TKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLN  870 (931)
T ss_pred             HHHHHHHHcCC-CCCccccc----cc-cCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCce
Confidence            99999988652 22112211    11 112 1345677889999988764 48999999999999999999999999999


Q ss_pred             EEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCCCCCc
Q 022552          244 VESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRRPETD  291 (295)
Q Consensus       244 I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L~~~~~~  291 (295)
                      |++|+|.|.|+++.|+|||++ +|.++.++ .+++|+++|.++|..+..+
T Consensus       871 I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~~~~  920 (931)
T PRK05092        871 IASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEGEAE  920 (931)
T ss_pred             EEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCcccc
Confidence            999999999999999999998 89999887 7899999999999765444

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=4.5e-27  Score=246.97  Aligned_cols=189  Identities=20%  Similarity=0.269  Sum_probs=158.4

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552           87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  165 (295)
Q Consensus        87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L  165 (295)
                      +.|.|.+......+.+.|+|+++||||||++||++|+.+|+||++|+|+|+.+|+ +|+|+|+++ +|. ..+++++++|
T Consensus       664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i  741 (856)
T PRK03059        664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLV  741 (856)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHH
Confidence            4677888888888999999999999999999999999999999999999998877 799999996 565 4456899999


Q ss_pred             HHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCC-CceEEEEEEeCCCcchHHHHHHHHHhCCceE
Q 022552          166 RLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDG-PKRSLLYIETADRPGLLVEIMKIIADVNVDV  244 (295)
Q Consensus       166 ~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~-~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I  244 (295)
                      ++.|.++|.+.. .....+     .+ +.+++...|..++.|.+.++. .++|+|+|.|+||||||++|+.+|+.+|++|
T Consensus       742 ~~~l~~~l~~~~-~~~~~~-----~~-~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I  814 (856)
T PRK03059        742 EHELAERLAEQA-PLPEPS-----KG-RLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSV  814 (856)
T ss_pred             HHHHHHHHcCCC-Ccchhh-----cc-cccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeE
Confidence            999999997632 111111     11 224556678888889887765 4699999999999999999999999999999


Q ss_pred             EEEEEEecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcC
Q 022552          245 ESAEIDTEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLR  286 (295)
Q Consensus       245 ~~A~I~T~g~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~~~L~  286 (295)
                      ++|+|.|.|+++.|+|||+  +.++.++ ++++|++.|.++|.
T Consensus       815 ~~AkI~T~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        815 HTAKINTLGERVEDTFLID--GSGLSDNRLQIQLETELLDALA  855 (856)
T ss_pred             EEEEEeecCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999994  4445554 88999999998874

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=8.1e-27  Score=242.93  Aligned_cols=186  Identities=21%  Similarity=0.209  Sum_probs=152.8

Q ss_pred             CCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHH
Q 022552           87 PMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIR  166 (295)
Q Consensus        87 ~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~  166 (295)
                      .+|.|.+.... .+.++|+|+++||||||++||++|+.+|+||++|+|+|..+.++|+|+|+++ +|.+.    .+++++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~  659 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLR  659 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHH
Confidence            46888888878 8999999999999999999999999999999999999955556899999986 66542    368899


Q ss_pred             HHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCC-ceEEEEEEeCCCcchHHHHHHHHHhCCceEE
Q 022552          167 LTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP-KRSLLYIETADRPGLLVEIMKIIADVNVDVE  245 (295)
Q Consensus       167 ~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~-~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~  245 (295)
                      ..|+++|.++ .+....+...  .+...+++...+..++.|.++++.+ ++|+|+|.|.||||||++|+.+|+++|+||+
T Consensus       660 ~~L~~~L~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~  736 (774)
T PRK03381        660 QDLRRALDGD-LDVLARLAAR--EAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVR  736 (774)
T ss_pred             HHHHHHHcCC-Cchhhhhhcc--cccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEE
Confidence            9999998763 2211222110  0000123445677888888887664 5899999999999999999999999999999


Q ss_pred             EEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHH
Q 022552          246 SAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       246 ~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~  282 (295)
                      +|+|.|.|+++.|+|||++ +|.+++++ +++|+++|.
T Consensus       737 ~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~  773 (774)
T PRK03381        737 WARVATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL  773 (774)
T ss_pred             EEEEeecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence            9999999999999999998 89999988 888888875

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.87  E-value=7.8e-22  Score=148.85  Aligned_cols=72  Identities=28%  Similarity=0.472  Sum_probs=69.2

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHcCC
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYLRR  287 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L~~  287 (295)
                      +|+|+|.|+|||||||+|+++|.++|++|++|+|+|+|++|+|+|||++ +|.||.++ ++++|+++|.++|.+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999998 89999988 889999999999876

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=2.3e-20  Score=140.85  Aligned_cols=72  Identities=26%  Similarity=0.400  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE--ecCCeeeeEEEEEeCCCCCChH-HHHHHHHHHHHHcCCC
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID--TEGLVAKDKFHVSYGGAALNSS-LSQVLVNCLRYYLRRP  288 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~--T~g~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~~~L~~~  288 (295)
                      |+|+|.|+|||||||+|+++|.++|++|++|+|+  |+|++++|+|||..+|++|.++ +++.|+++|+++|..|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999999  9999999999994489999887 7899999999999876

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=2.2e-20  Score=139.91  Aligned_cols=68  Identities=26%  Similarity=0.461  Sum_probs=63.9

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRY  283 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~  283 (295)
                      +|+|+|.++|||||||+|+++|+++|++|++|+|+|+|++++|+|||++ +|.|+.++ .+++|+++|..
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            4899999999999999999999999999999999999999999999998 89999877 78899988753

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.71  E-value=9.9e-17  Score=121.09  Aligned_cols=73  Identities=21%  Similarity=0.347  Sum_probs=69.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  174 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~  174 (295)
                      +|+|+|.|+||||||++|+++|+++|++|..|+|.|.|+.+.|+|+|++. +|.++.++++.++|+..|.+++.
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~   73 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE   73 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999997 89999998999999999998774

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=4.8e-16  Score=116.52  Aligned_cols=69  Identities=25%  Similarity=0.424  Sum_probs=64.8

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  170 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~  170 (295)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|+|++. +|.++.++++++.|++.|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence            48999999999999999999999999999999999999999999999997 8999988888888888764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.65  E-value=2.1e-15  Score=133.04  Aligned_cols=138  Identities=12%  Similarity=0.157  Sum_probs=103.5

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC
Q 022552           98 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH  177 (295)
Q Consensus        98 ~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~  177 (295)
                      ...+.+|+|.|+||||+++.++++|+++||||.+.++..+++.|.-++.|.    +.+    ..+++|+..|...-..  
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs----~~~----~~~~~le~~L~~l~~~--   74 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS----GSW----NAITLIESTLPLKGAE--   74 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe----CCh----hHHHHHHHHHHhhhhh--
Confidence            457789999999999999999999999999999999999999887667673    332    4667888877663211  


Q ss_pred             CCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC--e
Q 022552          178 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL--V  255 (295)
Q Consensus       178 ~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~--~  255 (295)
                      .++...+     +  +...+     .      ....+..+.++|.+.|||||+++||++|+++|+||.+++..|++.  .
T Consensus        75 ~~L~i~v-----~--~~~~~-----~------~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~  136 (190)
T PRK11589         75 LDLLIVM-----K--RTTAR-----P------RPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGE  136 (190)
T ss_pred             cCeEEEE-----E--ecccc-----c------cccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCC
Confidence            1111000     0  00000     0      011122589999999999999999999999999999999999995  6


Q ss_pred             eeeEEEEE
Q 022552          256 AKDKFHVS  263 (295)
Q Consensus       256 a~D~F~V~  263 (295)
                      ..+.|.+.
T Consensus       137 ~~~lf~~~  144 (190)
T PRK11589        137 RPAQLHIQ  144 (190)
T ss_pred             CcccEEEE
Confidence            77788876

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.64  E-value=3.3e-15  Score=158.35  Aligned_cols=154  Identities=16%  Similarity=0.245  Sum_probs=114.9

Q ss_pred             eeecccccCCCC-C--CCccceeeeeeecCCCcccc-chhhhhhccchhhhccccccCCC-CCCC-CC--cCcCCCCCcE
Q 022552           19 ALHRSKFLDSDF-A--APFSHDSFHLINFSRRFYEQ-GICLSRKKNILFASVNGTNAVSP-TPLK-SD--QDADYIPMPH   90 (295)
Q Consensus        19 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~~p~   90 (295)
                      +.++-...+++| +  .-+++|+|.|.|.+|.++.. ++.+.+++..|...+......+. .... +.  ..+ .+ +|.
T Consensus       726 ~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~-~~-~~~  803 (895)
T PRK00275        726 DQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHF-AF-PTQ  803 (895)
T ss_pred             HHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCC-CC-CCE
Confidence            334444555554 2  26799999999999998754 35557644434333322111000 0000 00  122 23 689


Q ss_pred             EEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022552           91 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  170 (295)
Q Consensus        91 V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~  170 (295)
                      |.++++.+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|.++.++|+|+|++. +|.++.+++++++|++.|.
T Consensus       804 V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~  882 (895)
T PRK00275        804 VTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAIC  882 (895)
T ss_pred             EEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888999999997 8888877789999999999


Q ss_pred             Hhhcc
Q 022552          171 NNLLK  175 (295)
Q Consensus       171 ~~L~~  175 (295)
                      ++|.+
T Consensus       883 ~~L~~  887 (895)
T PRK00275        883 EQLDA  887 (895)
T ss_pred             HHHhc
Confidence            98864

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.63  E-value=3.7e-15  Score=157.34  Aligned_cols=150  Identities=16%  Similarity=0.243  Sum_probs=111.5

Q ss_pred             eeecccccCCCCC---CCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCCCCC--cCcCCCCCcEEEE
Q 022552           19 ALHRSKFLDSDFA---APFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSD--QDADYIPMPHVLI   93 (295)
Q Consensus        19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~V~i   93 (295)
                      +.++-...+++|.   .-+++|+|.|.|.+|.++. ++.+.++++.|...+............++  ..+ .+ +|.|.+
T Consensus       699 ~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~-~~-~~~V~~  775 (854)
T PRK01759        699 GAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHF-HV-KTEVRF  775 (854)
T ss_pred             HHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCC-CC-CCEEEE
Confidence            3344444455542   3689999999999999884 45556644445444433221111000011  112 22 689999


Q ss_pred             eecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552           94 DQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus        94 ~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      +++.++.+|+|+|.++||||||++|+++|.++|++|+.|+|+|.|+.+.|+|+|++. +|.++.++++ +.|+..|.++|
T Consensus       776 dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~-~~l~~~L~~~l  853 (854)
T PRK01759        776 LNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEER-KALKSRLLSNL  853 (854)
T ss_pred             ccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHH-HHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999997 8888876555 88888887765

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.62  E-value=6e-15  Score=156.20  Aligned_cols=137  Identities=15%  Similarity=0.190  Sum_probs=108.4

Q ss_pred             CccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCC-CCC--cCcCCCCCcEEEEeecCCCCeEEEEEEeC
Q 022552           33 PFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPL-KSD--QDADYIPMPHVLIDQDSNSDATIVQLSFG  109 (295)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~p~V~i~~~~~~~~t~V~V~~~  109 (295)
                      -+++|+|.|.|.+|.++. ++.+.+++..|.+.+..-........ .++  ..+ .+ +|.|.++++.++.+|+|+|.++
T Consensus       740 g~alD~F~V~d~~g~~~~-~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~-~~-~~~V~~d~~~s~~~TvlEV~a~  816 (884)
T PRK05007        740 GMAMDTFIVLEPDGSPLS-QDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHF-NV-PTEVSFLPTHTDRRSYMELIAL  816 (884)
T ss_pred             CeEEEEEEEECCCCCCCC-HHHHHHHHHHHHHHHcCCCCCcccccccccccCCC-CC-CCEEEEccCCCCCeEEEEEEeC
Confidence            469999999999999884 45556655556555544321111100 011  122 22 6899999999999999999999


Q ss_pred             CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552          110 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  174 (295)
Q Consensus       110 DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~  174 (295)
                      ||||||++|+++|.++|++|+.|+|+|.|+.+.|+|+|++. +|.++. +++.+.|++.|.++|.
T Consensus       817 DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~-~~~~~~l~~~L~~~l~  879 (884)
T PRK05007        817 DQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA-DRRALN-EELQQELRQRLTEALN  879 (884)
T ss_pred             CchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCC-HHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999996 888886 6788999999988875

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.62  E-value=5.9e-15  Score=110.95  Aligned_cols=72  Identities=25%  Similarity=0.300  Sum_probs=65.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCC-CCCCCChHHHHHHHHHHHHhhc
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDT-GRKVEDPDLLERIRLTIINNLL  174 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~-g~~~~d~~~le~L~~~L~~~L~  174 (295)
                      |+|+|+++||||||++|+++|+++||||++|+++|.++.+.|+|+|+++ + |.++.+++++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999998888999999986 5 7777778899999999988764

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.61  E-value=4.6e-15  Score=111.51  Aligned_cols=70  Identities=26%  Similarity=0.321  Sum_probs=65.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-C-CCCCChH-HHHHHHHHHHHHcC
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-G-GAALNSS-LSQVLVNCLRYYLR  286 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~-G~~l~~~-~~~~L~~~L~~~L~  286 (295)
                      |+|+|.++||||||++|+++|+++|+||++|++.|.|+++.|+|+|++ . |.++.++ ++++|++.|.++|.
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~   73 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR   73 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999999999999999997 5 8888776 78999999998875

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.61  E-value=7.3e-15  Score=109.90  Aligned_cols=71  Identities=25%  Similarity=0.343  Sum_probs=63.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      +.|+|+++||||||++++++|+.+|+||++|+|+|.+++ ++|+|+|++. +|.++.+++++++|++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999999755 5799999986 7777767789999999987753

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=8e-15  Score=110.71  Aligned_cols=71  Identities=21%  Similarity=0.409  Sum_probs=66.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  174 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~--T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~  174 (295)
                      |+++|.++||||||++|+++|+++|++|+.|+|.  |.|+.+.|+|+| +. +|.++.++++.+.|+..|.+++.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  999999999999 64 78888888999999999998775

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.60  E-value=1e-14  Score=110.30  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=63.8

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-cCCeeeeEEEEEe-CCCCCCh-HHHHHHHHHHHHHcCCCC
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-EGLVAKDKFHVSY-GGAALNS-SLSQVLVNCLRYYLRRPE  289 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T-~g~~a~D~F~V~~-~G~~l~~-~~~~~L~~~L~~~L~~~~  289 (295)
                      +++|.++||||||++|+++|+++|++|.+|+|.| .++++.|+|+|++ +|. ..+ +++++|++.|+++|+..+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~~~   75 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGDSM   75 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHchhc
Confidence            6899999999999999999999999999999996 8999999999998 555 444 488899999999998754

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.58  E-value=1.8e-14  Score=107.72  Aligned_cols=69  Identities=26%  Similarity=0.334  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL  285 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L  285 (295)
                      +.|+|.++||||||++|+.+|+.+|+||.+|+|.|. ++++.|+|+|++ +|.++.++ ++++|++.|+++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            679999999999999999999999999999999988 599999999997 78888655 8889999998765

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.56  E-value=6.2e-14  Score=148.07  Aligned_cols=145  Identities=18%  Similarity=0.146  Sum_probs=108.3

Q ss_pred             eeecccccCCCCC---CCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCC----CCC--CC--cCcCCCC
Q 022552           19 ALHRSKFLDSDFA---APFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPT----PLK--SD--QDADYIP   87 (295)
Q Consensus        19 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~--~~~~~~~   87 (295)
                      +.++-...++++.   .-++||+|.|.|.+|.+   .+.+.+    +...++.+..+...    ..+  ++  ..+ .+ 
T Consensus       712 ~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~----i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~-  782 (869)
T PRK04374        712 DRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQR----LAAALRQVLAGDLQKVRPARRAVPRQLRHF-RF-  782 (869)
T ss_pred             HHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHH----HHHHHHHHHcCCCCccccccccCcccccCC-CC-
Confidence            3444444555443   37899999999998885   233555    44444444433211    010  11  222 33 


Q ss_pred             CcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHH
Q 022552           88 MPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRL  167 (295)
Q Consensus        88 ~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~  167 (295)
                      +|.|.++++.+.++|+|+|+++||||||++|+++|+++|+||++|+|+|.++.++|+|+|++. +|.++.++++ +.|+.
T Consensus       783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~-~~l~~  860 (869)
T PRK04374        783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESAR-QALRD  860 (869)
T ss_pred             CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHH-HHHHH
Confidence            689999999999999999999999999999999999999999999999998889999999997 7887766555 88999


Q ss_pred             HHHHhhc
Q 022552          168 TIINNLL  174 (295)
Q Consensus       168 ~L~~~L~  174 (295)
                      .|.++|.
T Consensus       861 ~L~~~l~  867 (869)
T PRK04374        861 ALCACLD  867 (869)
T ss_pred             HHHHHhc
Confidence            9888764

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.55  E-value=4.4e-14  Score=149.23  Aligned_cols=158  Identities=18%  Similarity=0.230  Sum_probs=111.2

Q ss_pred             cccccccCCcceeecccccCCCC---CCCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCCC--CC--
Q 022552            8 LFSSTASSSSTALHRSKFLDSDF---AAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLK--SD--   80 (295)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--   80 (295)
                      ||+.++.  .++.++-...++++   ..-++||+|.|+|..|. +..++.+.++++.|...+..-...+.....  ++  
T Consensus       691 LFa~i~g--~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~  767 (856)
T PRK03059        691 LFARICG--YFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQV  767 (856)
T ss_pred             HHHHHHH--HHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccc
Confidence            4444443  34555556666665   34689999999998887 444455566444443333322110110000  11  


Q ss_pred             cCcCCCCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChH
Q 022552           81 QDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPD  160 (295)
Q Consensus        81 ~~~~~~~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~  160 (295)
                      ..| .+ +|.|.++++.+.++|+|+|+++||||||++||++|+.+|+||++|+|+|.++.++|+|+|++.    +..+++
T Consensus       768 ~~~-~~-~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~----~~~~~~  841 (856)
T PRK03059        768 KHF-PI-TPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS----GLSDNR  841 (856)
T ss_pred             cCC-CC-CceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC----CCCCHH
Confidence            122 22 578999999999999999999999999999999999999999999999998888999999542    244678


Q ss_pred             HHHHHHHHHHHhhc
Q 022552          161 LLERIRLTIINNLL  174 (295)
Q Consensus       161 ~le~L~~~L~~~L~  174 (295)
                      ++++|++.|.++|.
T Consensus       842 ~~~~l~~~L~~~L~  855 (856)
T PRK03059        842 LQIQLETELLDALA  855 (856)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988763

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.55  E-value=7.1e-14  Score=105.74  Aligned_cols=71  Identities=24%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      +++|+++||||||++++++|+++|+||++|+|+|+.+ .++|+|+|++. +|. ..+++++++|++.|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999998544 55899999986 555 45678999999999998753

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.54  E-value=1.2e-13  Score=147.29  Aligned_cols=140  Identities=24%  Similarity=0.323  Sum_probs=111.1

Q ss_pred             CccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCC---CCC---CcCcCCCCCcEEEEeecCCCCeEEEEE
Q 022552           33 PFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTP---LKS---DQDADYIPMPHVLIDQDSNSDATIVQL  106 (295)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~p~V~i~~~~~~~~t~V~V  106 (295)
                      =+++|+|.|.+.+|.+...++.++++++.|...+..-...+...   ..+   ...+ .+ +|.|.++++.+.++|+|.|
T Consensus       771 g~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~-~~-~~~V~~~~~~s~~~t~i~I  848 (931)
T PRK05092        771 GRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAF-HV-PPRVTIDNEASNRFTVIEV  848 (931)
T ss_pred             CeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCC-CC-CCEEEEeeCCCCCeEEEEE
Confidence            47999999999999987666677775555554443211111100   001   1222 23 6899999999999999999


Q ss_pred             EeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552          107 SFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus       107 ~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      +++||||||++|+++|+++|+||.+|+|.|.++.+.|+|+|++. +|.++.++++++.|+..|.++|.+
T Consensus       849 ~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        849 NGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             EECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999998888999999997 888888888899999999998865

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.51  E-value=1.4e-13  Score=145.60  Aligned_cols=140  Identities=20%  Similarity=0.245  Sum_probs=110.1

Q ss_pred             CCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCC----CCCcCcCCCCCcEEEEeecCCCCeEEEEEE
Q 022552           32 APFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPL----KSDQDADYIPMPHVLIDQDSNSDATIVQLS  107 (295)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~  107 (295)
                      .-+++|+|.|.+.+|.+...++.+.++++.|...+......+....    .++..-.-..+|.|.++++.++.+|+|+|.
T Consensus       706 ~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~  785 (850)
T TIGR01693       706 DGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVR  785 (850)
T ss_pred             CCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEE
Confidence            4789999999999999887666677766666666655332121101    111111111368999999999999999999


Q ss_pred             eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552          108 FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus       108 ~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      ++|||||+++|+++|+++|+||..|+|.|.++...|+|+|++. .|.++.+ ++++.|+..|.++|
T Consensus       786 ~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       786 ALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             ECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCH-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999888999999996 7888766 77888988887765

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=5.9e-13  Score=136.45  Aligned_cols=152  Identities=18%  Similarity=0.257  Sum_probs=105.2

Q ss_pred             CCcceeecccccCCCCCCCccceeeeeeecCCCccccchhhhhhccchhhhccccccCCCCCCCCC---cCcCCCCCcEE
Q 022552           15 SSSTALHRSKFLDSDFAAPFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNAVSPTPLKSD---QDADYIPMPHV   91 (295)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~V   91 (295)
                      +.-+.|+..+++-+  ..=+++|+|-|.|.+|.+++ +..+..++.-+...+.+.-..++.....+   +.| ++ +|.|
T Consensus       707 ~~g~~i~dAqi~tt--~dG~alDtfiv~~~~g~~~~-~dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f-~i-~p~v  781 (867)
T COG2844         707 RRGLSIVDAQIFTT--RDGYALDTFIVLEPDGFPVE-EDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHF-PI-PPRV  781 (867)
T ss_pred             cCCCceeeeEEEEc--cCCceeeeEEEecCCCCccc-hhHHHHHHHHHHHHHhcCCCCCccccccCccccee-cc-CCce
Confidence            34444444443321  23579999999999999999 33333322222222222222221111111   345 44 6999


Q ss_pred             EEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552           92 LIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus        92 ~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .|.++..+..++++|.+.||||||++++++|+++|++|++|+|.|.|+.+.|+|+|++. .|.++.+ +..+.+.+.|.+
T Consensus       782 ~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~~-~~~q~l~~~ll~  859 (867)
T COG2844         782 TILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALNA-ELRQSLLQRLLE  859 (867)
T ss_pred             eeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecc-ccccCCH-HHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997 7888754 333444444444


Q ss_pred             hh
Q 022552          172 NL  173 (295)
Q Consensus       172 ~L  173 (295)
                      .+
T Consensus       860 al  861 (867)
T COG2844         860 AL  861 (867)
T ss_pred             Hh
Confidence            34

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.41  E-value=2.1e-12  Score=135.31  Aligned_cols=128  Identities=20%  Similarity=0.212  Sum_probs=93.3

Q ss_pred             CCccceeeeeeecCCCccccchhhhhhccchhhhcccccc------CC-C--CCCCCCcCcCCCCCcEEEEeecCCCCeE
Q 022552           32 APFSHDSFHLINFSRRFYEQGICLSRKKNILFASVNGTNA------VS-P--TPLKSDQDADYIPMPHVLIDQDSNSDAT  102 (295)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~--~~~~~~~~~~~~~~p~V~i~~~~~~~~t  102 (295)
                      .-+++|+|.|.+..|.+..    +.++++.|.+.+..-..      .- .  .+++ ...+ .+ +|.|.++++.+.+++
T Consensus       636 dg~~ld~F~V~~~~~~~~~----~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-~~~v~~~~~~~~~~t  708 (774)
T PRK03381        636 DGVAVLEFVVSPRFGSPPD----AALLRQDLRRALDGDLDVLARLAAREAAAAAVP-VRRP-AA-PPRVLWLDGASPDAT  708 (774)
T ss_pred             CCEEEEEEEEECCCCCcch----HHHHHHHHHHHHcCCCchhhhhhcccccccccc-cccC-CC-CcEEEEEECCCCCeE
Confidence            3789999999998887543    34433333333322110      00 0  0010 1222 22 678899999999999


Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTI  169 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L  169 (295)
                      +|+|+++||||||++|+++|+++|+||++|+|+|.++.++|+|+|++. +|.++.++  .+.|++.|
T Consensus       709 ~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~--~~~l~~~L  772 (774)
T PRK03381        709 VLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGA-AGGPLADA--RAAVEQAV  772 (774)
T ss_pred             EEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECC-CCCcCchH--HHHHHHHh
Confidence            999999999999999999999999999999999998889999999997 88887653  56666554

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.38  E-value=9.5e-12  Score=128.37  Aligned_cols=176  Identities=11%  Similarity=0.094  Sum_probs=123.5

Q ss_pred             chhhhccccccCCCCCCCCCcCcCCCCCcEEEEeecCCCCeEEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEcCC
Q 022552           61 ILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEGS  139 (295)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~~-~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~  139 (295)
                      -|+...++.++++....+..    .. +..+...    ...-.++|.. +|++|+|.+++++|+.+|++|++|++.+ .+
T Consensus       515 ~L~~~a~~~L~~~~~~~p~~----~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~  584 (693)
T PRK00227        515 IVCSRARARLTDIRPVAPMF----AA-RSDIGLV----EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NG  584 (693)
T ss_pred             HHHHHHHHHhcCCCCCCCCC----CC-ccccccc----ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CC
Confidence            37777777777776422111    11 1112221    1114677777 9999999999999999999999999999 55


Q ss_pred             eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEE
Q 022552          140 VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLL  219 (295)
Q Consensus       140 ~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~I  219 (295)
                      ..+..|.|... -|.++ ++   ..+++.+..++.+.-+.    +                ...++.+.+.+     +++
T Consensus       585 ~~~~~~~v~~~-~~~~~-~~---~~~~~~~~~~~~~~~~~----~----------------~~~~~~~~~~~-----~~~  634 (693)
T PRK00227        585 PWSAEFDVRAN-GPQDF-DP---QEFLQAYKSGVYSELPD----P----------------APGITATFWHG-----NIL  634 (693)
T ss_pred             ceEEEEEEecC-CCCCC-Ch---HHHHHHHHHhhcCCCCc----c----------------cCCCCceEeeC-----cEE
Confidence            56788999985 66654 33   56777777766542211    0                01223333332     899


Q ss_pred             EEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcC
Q 022552          220 YIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLR  286 (295)
Q Consensus       220 eV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~  286 (295)
                      ||++.||||+|++|+++|.    +|.+|+++|.|..+.|.||+..      +.....+...+..+|.
T Consensus       635 e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~------~~~r~~~~~~~~~~~~  691 (693)
T PRK00227        635 EVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP------GFDRATVERDVTRVLA  691 (693)
T ss_pred             EEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC------cccHHHHHHHHHHHHh
Confidence            9999999999999999999    8999999999999999999961      1134566666666654

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.36  E-value=5.3e-12  Score=93.61  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      ..|.|+++||||||++++++|+.+|+||++|+|+|+.+++ +|+|+|++. +|..   +   +.|+..|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~~---~---~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRGE---T---AALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Cccc---h---HHHHHHHHHhh
Confidence            4799999999999999999999999999999999998877 799999986 5642   1   34555555543

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.33  E-value=1.4e-11  Score=91.96  Aligned_cols=67  Identities=30%  Similarity=0.550  Sum_probs=58.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTII  170 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~  170 (295)
                      +.|+|+++||||+|++|+++|+++|+||++|+++|.++...|+|+|++. +|.++ +++++++|++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcC-CHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999987766899999996 77766 6678887777653

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.32  E-value=1.8e-11  Score=89.68  Aligned_cols=69  Identities=32%  Similarity=0.528  Sum_probs=62.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      |+|.|.+.||||+|++|+++|+++|++|.++++.|.++.+.|.|++++ .|.+...+.+++|+++|.++|
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999999889999999997 777765558889999998764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.31  E-value=3.8e-12  Score=109.15  Aligned_cols=137  Identities=17%  Similarity=0.207  Sum_probs=102.1

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP  178 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~  178 (295)
                      +++.+|++++.||||+...|++...++||||.++|+...|+.+.  +.+.-  .|.|    +...+|+..|.. +.++ .
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a--~i~li--sgs~----dav~~le~~l~~-l~~~-~   72 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFA--GIMLI--SGSW----DAVTLLEATLPL-LGAE-L   72 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhccee--EEEEE--eeCH----HHHHHHHHHhhc-cccc-C
Confidence            46789999999999999999999999999999999999999886  44443  4554    667788887765 3321 1


Q ss_pred             CchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--Cee
Q 022552          179 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVA  256 (295)
Q Consensus       179 ~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a  256 (295)
                      +  ..+.|.         |     ..+++  .......+.++|.+.|||||+.++|+.|..+|+||++....|+-  +..
T Consensus        73 ~--L~v~m~---------r-----t~~~~--~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~  134 (176)
T COG2716          73 D--LLVVMK---------R-----TGAHP--TPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSS  134 (176)
T ss_pred             C--eEEEEe---------e-----cCCCc--cCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCC
Confidence            1  111110         0     00000  11123479999999999999999999999999999999999975  346


Q ss_pred             eeEEEEE
Q 022552          257 KDKFHVS  263 (295)
Q Consensus       257 ~D~F~V~  263 (295)
                      ...|++.
T Consensus       135 ~~lfha~  141 (176)
T COG2716         135 APLFHAQ  141 (176)
T ss_pred             ccceehh
Confidence            6678875

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.29  E-value=3.2e-11  Score=90.07  Aligned_cols=65  Identities=26%  Similarity=0.410  Sum_probs=57.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHH
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCL  281 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L  281 (295)
                      +.|+|.++||||+|++|+.+|+++|+||.+|++.|.++.+.|+|+|.+ +|.++..+++++|++.|
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l   67 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI   67 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence            678999999999999999999999999999999999889999999997 78887444666666654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.27  E-value=5.4e-11  Score=87.18  Aligned_cols=69  Identities=29%  Similarity=0.494  Sum_probs=61.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      |.|.|.++|+||+|++|+++|+++|+||.++++.+.++...|.|++.+. +|.+ .+.+++++|++.|.++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~-~~~~-~~~~~~~~i~~~l~~~   69 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA-DGQP-LDPERQEALRAALGEA   69 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence            5789999999999999999999999999999999998877899999986 6766 4568999999988764

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.04  E-value=2.8e-09  Score=77.44  Aligned_cols=69  Identities=32%  Similarity=0.498  Sum_probs=60.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      +.|.|.+.|+||+|++|+++|+++|++|.++.+.+.++...+.|++.. +|....+++++.|++.|..++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence            368899999999999999999999999999999998889999999986 566655557888999987654

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.00  E-value=5.5e-09  Score=75.90  Aligned_cols=68  Identities=29%  Similarity=0.520  Sum_probs=59.2

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      .|.|.++|+||+|++|+++|+++|++|.++++.+.++...+.|++..+ ++.. .+++++++|++.|.++
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence            688999999999999999999999999999999998866799999886 5554 4568899999988764

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=98.87  E-value=1.9e-08  Score=74.65  Aligned_cols=64  Identities=19%  Similarity=0.290  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEe-CCCCCChHHHHHHHHHHHHHc
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSY-GGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      +.|.|.++|||||+++|+.+|..+|+||..|+|.|. .+.+.|+|+|.+ +|+-     -..|.++|+++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence            578899999999999999999999999999999864 688999999987 5543     134555555554

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.68  E-value=2.6e-07  Score=69.55  Aligned_cols=65  Identities=15%  Similarity=0.196  Sum_probs=53.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      ..+|+|.|+||||+++.++++|+++|+||.+.+..+.++.+.-.+.|.-+        ++..++|+..|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999998766777542        357788888888743

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.50  E-value=1.8e-06  Score=61.72  Aligned_cols=61  Identities=18%  Similarity=0.215  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +.|.|.++||||+|++++++|+++|+||..+.+.+.++  +....+...+         ....+.+.+.|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            47899999999999999999999999999999999988  3343344433         2444566666655

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.48  E-value=3.4e-07  Score=65.54  Aligned_cols=39  Identities=23%  Similarity=0.453  Sum_probs=36.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  255 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~  255 (295)
                      |.|.|.++||||+|++|+++|+++|+||.++...+.++.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~   39 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG   39 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence            678999999999999999999999999999999998775

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.46  E-value=1.8e-06  Score=64.97  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      +.+|++.|+||||++++|+++|+++|+||...+..+.|++..-.+.++-.     +...++|+++|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999998888888533     335677777776653

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.44  E-value=1.5e-06  Score=65.55  Aligned_cols=62  Identities=13%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ++|++.|+||||+.+++++.|+++|+||.+.+.+..++.+.-...+..    .+    ...+.|++.|..
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~----~~----~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG----SW----DAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe----cc----ccHHHHHHHHHH
Confidence            689999999999999999999999999999999998887744444432    11    234667777666

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.39  E-value=1e-06  Score=63.80  Aligned_cols=67  Identities=13%  Similarity=0.318  Sum_probs=57.7

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      ++|+|.|||+.||-+++|+++.+.|++|..+.++|.|.+..-+|+|... . ..+  +-+|..|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~-~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-P-PSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-C-CCC--cccHHHHHHHHHhc
Confidence            4799999999999999999999999999999999999998778999863 2 222  36889999988764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.36  E-value=2.1e-06  Score=64.20  Aligned_cols=64  Identities=9%  Similarity=0.030  Sum_probs=51.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      +|+|.++||||+.++++++|+++|+||.+.+..+.++.+.-.+.+.-+ .+      ...+.|+..|+...
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~------~~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DS------ADSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CC------CCHHHHHHHHHHHH
Confidence            478999999999999999999999999999988888877666777543 22      13467777777643

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.33  E-value=1.8e-06  Score=64.57  Aligned_cols=46  Identities=20%  Similarity=0.213  Sum_probs=40.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      +++|.++||||++++|+++|+++|+||...+-.+.+++-.-.|.+.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~   46 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQ   46 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEE
Confidence            4789999999999999999999999999999999887755556554

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.07  E-value=1.5e-05  Score=61.39  Aligned_cols=65  Identities=8%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      .+|++.|+||||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+  +  .  ....+.|+..|...
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~--~--~--~~~~~~L~~~l~~l   66 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS--E--S--NLDFAELQEELEEL   66 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC--C--C--CCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999999987766545555442  1  0  12246777777763

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=98.01  E-value=4e-05  Score=59.05  Aligned_cols=40  Identities=13%  Similarity=0.317  Sum_probs=36.9

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  255 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~  255 (295)
                      .++++|.++||||++++|+++|+++|+||...+-.+.++.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~   42 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGY   42 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCe
Confidence            5899999999999999999999999999999998887653

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.01  E-value=4.5e-05  Score=57.24  Aligned_cols=62  Identities=15%  Similarity=0.209  Sum_probs=46.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC------CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG------SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~------~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +|+|.|+|+||++++|++.|+++|+||.+.+..+.+      +.+.-.+.+.-+ .+      ...+.|+..|+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~------~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG------TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC------CCHHHHHHHHHH
Confidence            378999999999999999999999999999999987      333333444332 11      124677777776

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.01  E-value=1.8e-05  Score=58.80  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  137 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~  137 (295)
                      +|+|.|+||||++++|++.|+++|+||.+.+..+.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~   35 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD   35 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence            47899999999999999999999999999999874

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.99  E-value=1.3e-05  Score=59.52  Aligned_cols=44  Identities=16%  Similarity=0.407  Sum_probs=37.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      +|+|.|+||||++++|+++|+++|+||...+..+..  ....|++.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~   44 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMR   44 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEE
Confidence            478999999999999999999999999999998743  22357775

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.98  E-value=2.4e-05  Score=58.72  Aligned_cols=46  Identities=22%  Similarity=0.435  Sum_probs=39.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe--eeeEEEEE
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV--AKDKFHVS  263 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~--a~D~F~V~  263 (295)
                      +|.|.|+||||++++|+++|+++|+||.+.+..|.+..  ....|.++
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~   48 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQ   48 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEE
Confidence            37899999999999999999999999999999998732  44567665

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.96  E-value=5.2e-05  Score=58.35  Aligned_cols=39  Identities=15%  Similarity=0.264  Sum_probs=36.1

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  255 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~  255 (295)
                      .++++.|+||||++++|+++|+++|+||...+-.+.+++
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~   40 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGY   40 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCc
Confidence            579999999999999999999999999999999887654

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.94  E-value=7.1e-05  Score=56.39  Aligned_cols=39  Identities=18%  Similarity=0.389  Sum_probs=35.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  255 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~  255 (295)
                      .+|.+.|+||||++++|++.|+++|+||...+-.+.+++
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~   40 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTE   40 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCE
Confidence            678999999999999999999999999999999885553

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PRK00194 hypothetical protein; Validated

Probab=97.93  E-value=4.7e-05  Score=58.65  Aligned_cols=65  Identities=9%  Similarity=0.146  Sum_probs=48.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .++|+|.|+|+||+++++++.|+++|+||.+.+..+.++.+.-.+.+.-+  +.+    ...+.|+..|..
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESK----KDFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCC----CCHHHHHHHHHH
Confidence            57899999999999999999999999999999998877655544444332  111    123566666665

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.90  E-value=5e-05  Score=57.12  Aligned_cols=63  Identities=29%  Similarity=0.397  Sum_probs=47.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      .+.|.|.+.||||+|++|++++++.|+||.++.+.+.  ++.+.-.|.+.=.    +-++++.|.+.|+
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~----d~~~L~~ii~~L~   70 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK----DLEHLNQIIRKLR   70 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES----SHHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC----CHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999985  5666666766311    1236666666654

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.79  E-value=0.001  Score=54.34  Aligned_cols=111  Identities=20%  Similarity=0.335  Sum_probs=78.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCchh
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSE  182 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~~~~  182 (295)
                      +|.|...|+||-|+..++.|.+.|+||..-.|.-+++.-+-...|..         ++.   -...|+++          
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d~---A~~~Lee~----------   62 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PDE---AHSVLEEA----------   62 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hHH---HHHHHHHC----------
Confidence            68999999999999999999999999998888877773322233322         111   11223220          


Q ss_pred             HhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEE
Q 022552          183 QLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFH  261 (295)
Q Consensus       183 ~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~  261 (295)
                              |         |.    |.      ...++-|...|+||=|.+|+.+|.++|+|+.++-.-+. .+.|.-.|.
T Consensus        63 --------g---------F~----Vr------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r  115 (142)
T COG4747          63 --------G---------FT----VR------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVR  115 (142)
T ss_pred             --------C---------cE----EE------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEE
Confidence                    0         11    11      12578899999999999999999999999999887553 455555555


Q ss_pred             E
Q 022552          262 V  262 (295)
Q Consensus       262 V  262 (295)
                      +
T Consensus       116 ~  116 (142)
T COG4747         116 V  116 (142)
T ss_pred             h
Confidence            5

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.69  E-value=0.00026  Score=53.21  Aligned_cols=63  Identities=16%  Similarity=0.245  Sum_probs=45.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +.+.|.+.||+|+|++|+.++++.|+||.+.++.+.. ++. .-.|.+.-       .+.++++.|...|++
T Consensus         7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHCT
T ss_pred             EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHHC
Confidence            4789999999999999999999999999999999975 443 33455543       234677776666654

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.62  E-value=0.00046  Score=50.69  Aligned_cols=61  Identities=20%  Similarity=0.352  Sum_probs=44.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      |.|.+.||||+|.+|++++++.|+||.+....+.. +.+.-.|.+.-.+    .++++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~----~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS----EEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC----HHHHHHHHHHHhc
Confidence            68899999999999999999999999999887653 5555556553221    1255566666543

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.61  E-value=0.00075  Score=49.52  Aligned_cols=61  Identities=16%  Similarity=0.197  Sum_probs=46.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +.|.+.|+||+|++|+.++++.|.||.+....+..++. ...|.+.-       .+.++++++...|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHhc
Confidence            67899999999999999999999999998887765444 33455543       234677777777765

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=97.58  E-value=0.00021  Score=63.25  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=44.9

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      .+.+|++.|+|||||++.|+++|+++|+||...+.+..|+.-.-++.|+
T Consensus         7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs   55 (190)
T PRK11589          7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS   55 (190)
T ss_pred             cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence            5799999999999999999999999999999999999999776667773

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.52  E-value=0.00057  Score=64.17  Aligned_cols=67  Identities=19%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE--cCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT--EGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T--~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      ...+|+|.|+||||+.+.|+++|+++|+||.+.+..+  .++.+.-.+.+.-  +..    +..++.|+..|++.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~----~~~~~~L~~~L~~l   73 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGL----IFNLETLRADFAAL   73 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCC----CCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999  6664433333332  111    12367788877763

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.48  E-value=0.00037  Score=65.59  Aligned_cols=66  Identities=11%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE--EcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN--TEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~--T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+|+|.|+||||+.+.++++|+++|+||.+.+.+  +..+.+.-.+.+.+. ....+    ..+.|+..|.+
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~----~~~~l~~~l~~   76 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAA----SVDTFRQEFQP   76 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCC----CHHHHHHHHHH
Confidence            45899999999999999999999999999999997  444444323333321 11111    24566776666

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.45  E-value=0.00086  Score=62.98  Aligned_cols=45  Identities=20%  Similarity=0.393  Sum_probs=39.8

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHVS  263 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T--~g~~a~D~F~V~  263 (295)
                      ..++|+|.|+|||||+++|+++|+++|+||...+..+  .++    .|.+.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~   51 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMR   51 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEE
Confidence            3589999999999999999999999999999999998  554    47664

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.41  E-value=0.00021  Score=55.57  Aligned_cols=35  Identities=17%  Similarity=0.420  Sum_probs=31.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      ..+|+|.+.||||+.+.|+++|+++|+||....=+
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQt   37 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQT   37 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence            57899999999999999999999999999876533

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.41  E-value=0.002  Score=48.51  Aligned_cols=66  Identities=12%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC-eeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL-VAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~-~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      +.+.+...|+||-|++|.+.|+++|+||.+......+. ...=.|+|.-+|. ..++..+++.+.|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHHHHHH
Confidence            56778889999999999999999999999998776543 3445677865664 334444555555554

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.36  E-value=0.00073  Score=49.10  Aligned_cols=67  Identities=21%  Similarity=0.267  Sum_probs=53.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~  284 (295)
                      ++|+|.++|+.||=.||++++.++|++|..+.++|.|.=.-=+|-|......+. -.-..|+++|+.+
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~-~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIK-VRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCc-ccHHHHHHHHHhc
Confidence            478999999999999999999999999999999999998888888864333321 1345667776654

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.36  E-value=0.00094  Score=62.56  Aligned_cols=63  Identities=11%  Similarity=0.086  Sum_probs=46.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +|+|.|+||||+.+.+++.|+++|+||.+.+.+...  +.+.-.+.+..+  +..+    ..+.|+..|..
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHH
Confidence            689999999999999999999999999999999864  555444444432  2111    24566666666

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.35  E-value=0.0007  Score=50.27  Aligned_cols=35  Identities=31%  Similarity=0.568  Sum_probs=32.7

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  252 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~  252 (295)
                      .|+|.+.||+|+|++|+.++++.|+||.+.++.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999999875

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.33  E-value=0.0007  Score=63.57  Aligned_cols=46  Identities=9%  Similarity=0.211  Sum_probs=39.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      .++++|.|+||||++++||++|+++|+||....-.|..  ..+.|.+.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m~   52 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFMR   52 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEEE
Confidence            58899999999999999999999999999999887543  55567664

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.30  E-value=0.002  Score=46.13  Aligned_cols=34  Identities=29%  Similarity=0.575  Sum_probs=30.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  252 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~  252 (295)
                      +.|..+|+||+|++|+++|++.|++|.+......
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~   34 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA   34 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence            3578899999999999999999999998887653

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.25  E-value=0.0033  Score=44.91  Aligned_cols=61  Identities=11%  Similarity=0.242  Sum_probs=42.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC----CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG----SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~----~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +.|.++|+||+|++|+.+|+++|+||.+.......    .+. .-.|.+.-       .+.+.++.+...|++
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            35788999999999999999999999988776543    233 22233322       123566666666654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.24  E-value=0.0018  Score=47.02  Aligned_cols=63  Identities=17%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      +.|.|.+.|+||+|.+|+++|+++|++|.+....+..  +.+.=.|.+ +   ..+..+++.+.+.|++
T Consensus         1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~-~---~~~~~~l~~~i~~L~~   65 (79)
T cd04881           1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT-H---ETSEAALNAALAEIEA   65 (79)
T ss_pred             CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE-c---cCCHHHHHHHHHHHHc
Confidence            3578899999999999999999999999999876543  333332333 2   2234466666666653

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.23  E-value=0.00065  Score=63.91  Aligned_cols=46  Identities=11%  Similarity=0.195  Sum_probs=37.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      .++|+|.|+|||||++.|+++|+++|+||..+.-.+  +...+.|+++
T Consensus         9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~--d~~~~~ffm~   54 (289)
T PRK13010          9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD--DDESGRFFMR   54 (289)
T ss_pred             CEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc--ccccCcEEEE
Confidence            579999999999999999999999999999988763  3333445543

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.21  E-value=0.00055  Score=53.26  Aligned_cols=66  Identities=9%  Similarity=0.117  Sum_probs=47.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      ..+|+|.++||||+.+.++++|+++|+||.+-...-..+.+.-.+.|..+  ..    ......+++.|...
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~----~~d~~~lr~~l~~~   68 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KE----VVDFAALRDELAAE   68 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hH----hccHHHHHHHHHHH
Confidence            46899999999999999999999999999987776666666444555432  11    12335566666553

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.21  E-value=0.0012  Score=46.02  Aligned_cols=45  Identities=20%  Similarity=0.380  Sum_probs=38.1

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEE
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVS  263 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~  263 (295)
                      +.|...|+||.|.+|+..|.++|+||.+..+...+ +.+.-.|.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            45788999999999999999999999999987655 6666666663

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=97.18  E-value=0.003  Score=44.82  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=37.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEE
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV  262 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V  262 (295)
                      +.|.+.|+||+|.+|+++|+++|++|.+..+...+  +...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67889999999999999999999999999997764  455555555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.17  E-value=0.0018  Score=46.89  Aligned_cols=45  Identities=13%  Similarity=0.335  Sum_probs=37.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      ..+.|...|+||.|++|+.+|.++|+||.+.-+...++.  .++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            467889999999999999999999999999998766553  555553

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.17  E-value=0.0039  Score=45.15  Aligned_cols=46  Identities=22%  Similarity=0.394  Sum_probs=36.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-C-eeeeEEEE
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-L-VAKDKFHV  262 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~-~a~D~F~V  262 (295)
                      +.+.|..+|+||.|.+|+++|+++|++|.+....... + ...-.|.+
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v   49 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISF   49 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEE
Confidence            5688899999999999999999999999988776652 2 33334555

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.16  E-value=0.0024  Score=59.95  Aligned_cols=65  Identities=11%  Similarity=0.002  Sum_probs=46.9

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      ..+|+|.|+||||+.+.++++|+++|+||.+.+..+...  .+.-.+.+..+ .+      ...+.|+..|.+.
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p-~~------~~~~~L~~~L~~l   73 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE-EG------LDEDALRAGFAPI   73 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC-CC------CCHHHHHHHHHHH
Confidence            468999999999999999999999999999999985432  33333444332 22      1246677777663

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=97.14  E-value=0.0049  Score=43.88  Aligned_cols=60  Identities=20%  Similarity=0.321  Sum_probs=43.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-C-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-G-LVAKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      .+.+.+.|+||+|.+|+++|+++|++|.+....+. + +.+.=.|.+ + . + + +.++.+.+.|+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~-~-~-~-~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV-E-G-D-D-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE-E-C-C-H-HHHHHHHHHHh
Confidence            47889999999999999999999999999998775 3 333333334 2 2 1 2 44556666554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.14  E-value=0.0023  Score=59.98  Aligned_cols=44  Identities=23%  Similarity=0.436  Sum_probs=37.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      +|+|.|+|||||++.|+++|+++|+||....-.+.  ...+.|+++
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~--~~~~~F~mr   45 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD--PETGRFFMR   45 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc--CCCCeEEEE
Confidence            68999999999999999999999999999887665  334567664

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.11  E-value=0.0032  Score=46.72  Aligned_cols=59  Identities=14%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+.|.+.||+|++++|+.++++.|+||.+..+.+. +..  .|.+.-       .+.++++.+...|++
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i--~l~i~v-------~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRI--YLNFPT-------IEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeE--EEEeEe-------cCHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999775 331  133321       234666776666655

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.98  E-value=0.0051  Score=52.89  Aligned_cols=66  Identities=12%  Similarity=0.262  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      ++|.|...|+||.|.+|+.+|+++|+||.+..+...++...-.+.+.=+|   ++...++|...|.+.+
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCc
Confidence            57899999999999999999999999999998876543322223332234   2445666666665543

acetohydroxyacid synthase is a synonym.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.98  E-value=0.0036  Score=45.97  Aligned_cols=62  Identities=21%  Similarity=0.215  Sum_probs=44.3

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      .+.|.+.||||+|++|+++|++.|++|......+.. +.+.=.|.+.-.+.   +.+++.|.+.|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~---~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM---NGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch---HHHHHHHHHHHh
Confidence            478999999999999999999999999999876543 44445555532221   124556666654

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.96  E-value=0.0021  Score=59.45  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=36.0

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      ...++++.|+|++|+.+.|++.|+++|+||.++..++..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~   44 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDP   44 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccccc
Confidence            457999999999999999999999999999999999654

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.95  E-value=0.0043  Score=43.93  Aligned_cols=36  Identities=31%  Similarity=0.507  Sum_probs=31.4

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  253 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g  253 (295)
                      ++.|..+|+||-|.+++.+|+++|+||.+......+
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367889999999999999999999999988875544

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.94  E-value=0.0027  Score=55.52  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=33.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                      +.+.|.+.|+||+|++|+.+|+.+|+||.+..+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~   37 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP   37 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence            57899999999999999999999999999999965

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.93  E-value=0.0082  Score=43.52  Aligned_cols=63  Identities=14%  Similarity=0.185  Sum_probs=43.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+.|.+.|++|++++++++|+++|+||......+..+ +......++..      .+.+.++.+...|++
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHHc
Confidence            4788999999999999999999999999988765543 43322333321      133555555555543

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.92  E-value=0.005  Score=44.65  Aligned_cols=44  Identities=20%  Similarity=0.459  Sum_probs=34.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEE
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHV  262 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V  262 (295)
                      +-+...|+||.+++|+++|+++|+||.+......  ++.+.=+|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            4568999999999999999999999999887553  3445444444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.89  E-value=0.01  Score=43.47  Aligned_cols=62  Identities=13%  Similarity=0.117  Sum_probs=44.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChH-HHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPD-LLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~-~le~L~~~L~~  171 (295)
                      .+.|.+.|+||++++|+++|+++|+||......+..++. .-.|.+...       +.+ .+++|...|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-------~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-------TMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-------chHHHHHHHHHHHhc
Confidence            478999999999999999999999999998775544333 333555431       223 66777766665

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=96.89  E-value=0.014  Score=45.50  Aligned_cols=71  Identities=11%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHcCC
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYLRR  287 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~  287 (295)
                      ..+.|-+...|+||-|+++-..|+++|||+.+.+....... -+=.|||.-+|.  .++..+++.+.|.+.|.-
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~--~~~~~~~~l~~L~~~~~~   84 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK--SAPALDPIIKSLRNDIGA   84 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC--CCHHHHHHHHHHHHHhCC
Confidence            45777788899999999999999999999999998765544 344688865675  245555666777766654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.88  E-value=0.0077  Score=45.65  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      +.|.+...|+||.|.+|+.+|+.+|+||.+..+.
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg   36 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLN   36 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence            5789999999999999999999999999999986

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.87  E-value=0.008  Score=42.73  Aligned_cols=33  Identities=18%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                      |.+.+.|+||.|.+|+++|+++|++|.+.....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~   34 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR   34 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence            578899999999999999999999999998765

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.83  E-value=0.0051  Score=42.82  Aligned_cols=45  Identities=9%  Similarity=0.269  Sum_probs=36.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeEEEEEEEe
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQTKFFIT  148 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~~D~F~V~  148 (295)
                      +.|..+|+||.+++++.+|.++|+||....+...+ +...-.|.+.
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence            46789999999999999999999999999988876 3344445553

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.80  E-value=0.015  Score=41.29  Aligned_cols=62  Identities=15%  Similarity=0.184  Sum_probs=43.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc-CCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~-~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+.+.+.|++|++.+++.+|+++|+||......+. +++.....+....      .+ ..++.+...|+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~l~~~l~~   64 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG------DD-DVIEQIVKQLNK   64 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC------CH-HHHHHHHHHHhC
Confidence            46788999999999999999999999999988776 4444333333221      12 455555555554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.77  E-value=0.011  Score=46.73  Aligned_cols=66  Identities=11%  Similarity=0.150  Sum_probs=45.6

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~  284 (295)
                      ...+|.+...|+||+|.+|+-.|+.+|+||.+..+.-.+....-.+.+.-.+    +...+++...|.+.
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~----~~~i~Qi~kQL~KL   72 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND----DQRLEQMISQIEKL   72 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC----chHHHHHHHHHhCC
Confidence            4678999999999999999999999999999999864443322223322122    23455555555443

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.73  E-value=0.011  Score=51.03  Aligned_cols=63  Identities=13%  Similarity=0.260  Sum_probs=44.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~  284 (295)
                      ++|.|...|+||.|++|+..|+++|+||.+..+....  +...=+|.+  +|   ++...+++...|.+.
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V--~~---~~~~i~qi~kQl~KL   67 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT--SG---DEQVIEQITKQLNKL   67 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE--EC---CHHHHHHHHHHHhcc
Confidence            5789999999999999999999999999999886543  223333333  33   233455555555443

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.72  E-value=0.0023  Score=48.13  Aligned_cols=67  Identities=15%  Similarity=0.155  Sum_probs=51.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEE--EEeCCCCCChH-HHHHHHHHHHHHc
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFH--VSYGGAALNSS-LSQVLVNCLRYYL  285 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T--~g~~a~D~F~--V~~~G~~l~~~-~~~~L~~~L~~~L  285 (295)
                      +|+.+.-||-.+||+|-+|+.+|+.|.+|+|.-  .+++...+|.  +.+.++.++.. ..+++.+.+.+.|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999964  4566666644  44445556655 6777777776654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.72  E-value=0.012  Score=44.63  Aligned_cols=63  Identities=8%  Similarity=0.055  Sum_probs=45.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+.+...|+||.|++++++|+..|+||.+-.+.-+.+ +.. .+.++-  .|    +++.+++|.+.|..
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~s-riti~~--~~----~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVS-EMKLTA--VC----TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCee-EEEEEE--EC----CHHHHHHHHHHHhC
Confidence            36899999999999999999999999999988875544 332 233332  12    23566777777665

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.71  E-value=0.012  Score=46.53  Aligned_cols=66  Identities=12%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+...+.+...|+||.|++|++.|+..|+||.+-.+..+.+.-+-.+.+.-  .+     ++.+++|.+.|..
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv--~~-----~~~i~Qi~kQL~K   71 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV--ND-----DQRLEQMISQIEK   71 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE--cC-----chHHHHHHHHHhC
Confidence            344579999999999999999999999999999988777653322233332  11     2566777777665

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.70  E-value=0.01  Score=45.84  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+.+...|+||.|+++++.|+..|+||.+-.+..+.+.-+-.+.+.-. .|    ++..+++|...|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~----d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ----DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC----CHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999997776532222333221 13    34666777777665

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.64  E-value=0.0063  Score=44.00  Aligned_cols=39  Identities=10%  Similarity=0.268  Sum_probs=35.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV  140 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~  140 (295)
                      ..+.|..+|+||.|++++.+|.++|+||.+..++..++.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~   40 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF   40 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence            368899999999999999999999999999998777663

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.61  E-value=0.015  Score=41.51  Aligned_cols=35  Identities=26%  Similarity=0.396  Sum_probs=31.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  252 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~  252 (295)
                      .+.+.+.|+||.|++|++.|.++|++|.+....+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~   36 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE   36 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence            47788999999999999999999999999888765

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.58  E-value=0.024  Score=40.90  Aligned_cols=37  Identities=14%  Similarity=0.184  Sum_probs=33.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      ..+.|..+|+||.|+++++.|+++|+||.........
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~   38 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIR   38 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEee
Confidence            3678899999999999999999999999988877763

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=96.55  E-value=0.031  Score=46.54  Aligned_cols=49  Identities=27%  Similarity=0.348  Sum_probs=40.0

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEE
Q 022552          214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHV  262 (295)
Q Consensus       214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V  262 (295)
                      ...+.|.|.+.|+||+|++|+++|+++|++|.+....+..  +.+.-.|.+
T Consensus        54 k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v  104 (136)
T PRK08577         54 KKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV  104 (136)
T ss_pred             ccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence            3489999999999999999999999999999999887754  334444444

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.55  E-value=0.0031  Score=45.38  Aligned_cols=44  Identities=20%  Similarity=0.379  Sum_probs=34.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      +.+.+.|+||+|.+|+..|++.|+||.+....+.++.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            45689999999999999999999999888766555444444444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.54  E-value=0.011  Score=54.85  Aligned_cols=63  Identities=16%  Similarity=0.334  Sum_probs=47.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe----CCCCCChH-HHHHHHH
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY----GGAALNSS-LSQVLVN  279 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~----~G~~l~~~-~~~~L~~  279 (295)
                      +.+++.+.|+|+|||++.|+..|+++|+||....=.  ++.....|+++-    .+.++..+ .++.+..
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~   73 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPLDREALRAAFAP   73 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence            468999999999999999999999999999887655  456667788862    34444444 3334333

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.54  E-value=0.029  Score=41.46  Aligned_cols=64  Identities=17%  Similarity=0.314  Sum_probs=45.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      |-+...|+||-|++|...|+++|+||.+.+..... ....=.|||.-.|.. .+...+.+.+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~-~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI-DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHHHH
Confidence            34556899999999999999999999999776543 456667888656642 23344555555554

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.52  E-value=0.017  Score=44.52  Aligned_cols=65  Identities=11%  Similarity=0.189  Sum_probs=44.4

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE-eCCCCCChHHHHHHHHHHHHH
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS-YGGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~-~~G~~l~~~~~~~L~~~L~~~  284 (295)
                      .+|.+...|+||.|.+|+..|+.+|+||.+..+........-.+-+. ..|.   +...+++...|.+.
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d---~~~ieqI~kQL~Kl   68 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD---DTSLHILIKKLKQQ   68 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC---HHHHHHHHHHHhCC
Confidence            46888899999999999999999999999999975433332223332 2232   23455666555543

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.52  E-value=0.02  Score=37.29  Aligned_cols=35  Identities=34%  Similarity=0.718  Sum_probs=31.6

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  253 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g  253 (295)
                      |.+.+.|+||++.+|..+|.++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.46  E-value=0.028  Score=48.33  Aligned_cols=61  Identities=18%  Similarity=0.280  Sum_probs=47.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+.|...|+||.|++++++|++.|+||.+-.+.... ++.. -+|.+.    +    ++..+++|.+.|..
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~----d~~~i~qi~kQl~K   65 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----G----DDKVLEQITKQLNK   65 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhc
Confidence            688999999999999999999999999999988776 3443 334442    2    23567777777765

acetohydroxyacid synthase is a synonym.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.45  E-value=0.018  Score=50.42  Aligned_cols=66  Identities=11%  Similarity=0.174  Sum_probs=47.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      ..+.|.+.|+||++++++++|+..|+||.+-.+..+.+.-.-.+.+.-+  +.    ...+++|++.|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~----~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GD----DRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CC----HHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999997644422212333332  21    233677777777643

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.44  E-value=0.029  Score=39.97  Aligned_cols=39  Identities=18%  Similarity=0.185  Sum_probs=33.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK  141 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~  141 (295)
                      .+.+.++|++|.+++++..|+++|+||.+.......++.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~   40 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGK   40 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCe
Confidence            578899999999999999999999999988877654333

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.41  E-value=0.033  Score=48.15  Aligned_cols=62  Identities=15%  Similarity=0.221  Sum_probs=47.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+.|...|+||.|++|+++|++.|+||.+-.+.... ++.. -++.+.    |    +++.++++...|..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~----~----~~~~i~qi~kQl~K   66 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS----G----DEQVIEQITKQLNK   66 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE----C----CHHHHHHHHHHHhc
Confidence            4688999999999999999999999999999887775 3443 234332    2    23667788777766

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.40  E-value=0.021  Score=41.79  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  137 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~  137 (295)
                      +.|..+|+||-|++++.+|+++|.||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            6788999999999999999999999998876665

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.39  E-value=0.027  Score=42.65  Aligned_cols=46  Identities=17%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe--cCCeeeeEEEE
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT--EGLVAKDKFHV  262 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T--~g~~a~D~F~V  262 (295)
                      +.|.+...|+||.|.+|+..|+.+|+||.+..+.-  .++...=++.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v   51 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV   51 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence            67899999999999999999999999999999965  23434444555

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.33  E-value=0.026  Score=41.99  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=44.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      .|-+...|+||-|++|-..|+.+|||+.+.+....... -+=.|||.-+|   .++..+++.+.|..
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~---~~~~~~~~l~~L~~   65 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV---DRGDLDQLISSLRR   65 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc---ChHHHHHHHHHHHH
Confidence            34556689999999999999999999999998765544 45568886567   23334444444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.33  E-value=0.034  Score=40.28  Aligned_cols=35  Identities=31%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                      +.+.+..+|+||.|.+|+++|.++|+||.+....-
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~   36 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYP   36 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEec
Confidence            46788999999999999999999999999887543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.30  E-value=0.043  Score=37.63  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=32.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV  140 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~  140 (295)
                      +.|.+.|+||.+..++..|.++|++|....+...+++
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~   37 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDG   37 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCC
Confidence            4678999999999999999999999999988776533

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.30  E-value=0.06  Score=40.34  Aligned_cols=48  Identities=21%  Similarity=0.340  Sum_probs=38.3

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEee
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR  149 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~  149 (295)
                      +.+.+..+|+||.|+++.++|+++|+||.+-.....++. ..-.|+|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            356677899999999999999999999998877766542 334577766

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>PRK08577 hypothetical protein; Provisional

Probab=96.30  E-value=0.079  Score=44.06  Aligned_cols=76  Identities=13%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             EEEEeecC--CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552           90 HVLIDQDS--NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLERI  165 (295)
Q Consensus        90 ~V~i~~~~--~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~-~D~F~V~~~~~g~~~~d~~~le~L  165 (295)
                      .|.+..-.  ....+.+.|.+.|+||+|++++++|+++|+||.+....+.. ++. .-.|.+.-.  +.    +..++.+
T Consensus        43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~--~~----~~~l~~l  116 (136)
T PRK08577         43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS--KS----DIDLEEL  116 (136)
T ss_pred             EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC--Cc----hhhHHHH
Confidence            44444433  34477899999999999999999999999999998887765 333 233434321  11    1345666


Q ss_pred             HHHHHH
Q 022552          166 RLTIIN  171 (295)
Q Consensus       166 ~~~L~~  171 (295)
                      ...|.+
T Consensus       117 ~~~L~~  122 (136)
T PRK08577        117 EEELKK  122 (136)
T ss_pred             HHHHHc
Confidence            666554

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.25  E-value=0.019  Score=40.51  Aligned_cols=44  Identities=14%  Similarity=0.119  Sum_probs=36.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeE-EEEEEE
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFI  147 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~-~D~F~V  147 (295)
                      +.|.+.|++|++++++++|+++|+||.+..+.... ++. .-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            67899999999999999999999999999988765 333 344555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.25  E-value=0.023  Score=41.59  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTE  252 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~  252 (295)
                      +.|..+|+||-|.+++.+|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5778999999999999999999999998876654

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=96.23  E-value=0.052  Score=46.02  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=53.0

Q ss_pred             EEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHH
Q 022552           91 VLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTI  169 (295)
Q Consensus        91 V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L  169 (295)
                      .-+..........+.+...|+||+|++|+++|+++|+||..-......++. .-.|.+...  +  .  ...++.|...|
T Consensus        59 f~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs--~--~--~~~L~~Li~~L  132 (147)
T PRK04435         59 FPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTS--S--M--EGDIDELLEKL  132 (147)
T ss_pred             ECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeC--C--h--HHHHHHHHHHH
Confidence            344445566777899999999999999999999999999988876555554 334555432  1  1  13566666666


Q ss_pred             HH
Q 022552          170 IN  171 (295)
Q Consensus       170 ~~  171 (295)
                      ++
T Consensus       133 ~~  134 (147)
T PRK04435        133 RN  134 (147)
T ss_pred             Hc
Confidence            54

>PRK07334 threonine dehydratase; Provisional

Probab=96.03  E-value=0.032  Score=54.62  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-----GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-----g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      .+.|+|.+.||||+|.+|+++|++.++||.+....+.     ++.+.-.|.+.=.    +.++++.|.+.|+.
T Consensus       326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~----d~~~L~~vi~~Lr~  394 (403)
T PRK07334        326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETR----DAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999998764     3333333444111    12366777777764

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.01  E-value=0.031  Score=38.34  Aligned_cols=35  Identities=34%  Similarity=0.664  Sum_probs=32.0

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  253 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g  253 (295)
                      |.|.+.|+||++.+|+..|.+++++|.+..+...+
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD   35 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence            46789999999999999999999999999998766

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.99  E-value=0.087  Score=34.08  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=31.7

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      |.+.++|++|++.+++++|.++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46889999999999999999999999999987654

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=95.90  E-value=0.06  Score=40.77  Aligned_cols=61  Identities=7%  Similarity=0.124  Sum_probs=45.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+.+...|+||.|++++++|...|+||.+-.+..+.+. .. -++.+.   +      +..++.|.+.|..
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~---~------~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA---S------ERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC---C------CchHHHHHHHHhc
Confidence            478999999999999999999999999999999886543 22 233342   1      2445677776655

>PRK07334 threonine dehydratase; Provisional

Probab=95.84  E-value=0.062  Score=52.64  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc----CCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~----~~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +.|.|.+.||+|+|++|+.+|++.++||.+....+.    .++.. -.|.|.-       .+.+++++|...|++
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999998765    34442 2343432       234777888887776

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.81  E-value=0.051  Score=39.20  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=34.5

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc-C-CeEEEEEEE
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE-G-SVKQTKFFI  147 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~-~-~~~~D~F~V  147 (295)
                      +.+..+|+||.++++++.|+++|+||.+...... . +...-.|.+
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v   47 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV   47 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence            4678999999999999999999999998887664 2 333434444

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=95.81  E-value=0.093  Score=37.06  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  137 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~  137 (295)
                      +.+.+.|+||.+++++..|+++|+||........
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~   35 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRK   35 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEec
Confidence            5788999999999999999999999998887763

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=95.67  E-value=0.13  Score=43.70  Aligned_cols=66  Identities=18%  Similarity=0.183  Sum_probs=47.5

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      .....|.+...|+||+|++|.++|+++|+||......+. ++.+.=.|.+.-.+.   +..+++|.+.|+
T Consensus        67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~---~~~L~~Li~~L~  133 (147)
T PRK04435         67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM---EGDIDELLEKLR  133 (147)
T ss_pred             CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh---HHHHHHHHHHHH
Confidence            358999999999999999999999999999998876553 344555566633211   124555656554

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.67  E-value=0.033  Score=39.29  Aligned_cols=36  Identities=17%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      ++.|..+|+||-+++++++|+++|+||.+...+...
T Consensus         1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~   36 (65)
T cd04882           1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK   36 (65)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence            367889999999999999999999999988775554

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=95.63  E-value=0.054  Score=56.79  Aligned_cols=68  Identities=19%  Similarity=0.204  Sum_probs=56.2

Q ss_pred             EEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChH-HHHHHHHHHHHHc
Q 022552          217 SLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSS-LSQVLVNCLRYYL  285 (295)
Q Consensus       217 t~IeV~a-~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~-~~~~L~~~L~~~L  285 (295)
                      ..++|.. +|+||+|.+++-+|+.++.+|++|++.+ ++.+...|.|.. .|.+-... ..|.++..+.--+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  617 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSEL  617 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCC
Confidence            6777888 9999999999999999999999999999 888889999987 67775554 5566666654433

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=95.63  E-value=0.071  Score=40.01  Aligned_cols=62  Identities=15%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      |-+..+|+||-|+++-..|+.+|+|+.+.+....... .+=.|||.-+|..  + ..+++.+.|.+
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~--~-~i~~~l~~l~~   65 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ--R-RLDELVQLLKR   65 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH--H-HHHHHHHHHHH
Confidence            4455689999999999999999999999998765444 4556888656664  2 33444444443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=95.56  E-value=0.084  Score=38.39  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=41.3

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +.|..+||||-|.+++.+|+. |.||..-+-...+.+...++.....      .+++..+.|.+.|++
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV------PDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            357889999999999999999 9999987654443333333333331      124666777777665

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.43  E-value=0.094  Score=46.95  Aligned_cols=58  Identities=14%  Similarity=0.367  Sum_probs=43.5

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHH
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQ  275 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~  275 (295)
                      ..+.|-+.-.||||.+..|+.+|.++||||..+++...  |+.|.=+..+   .++++++.++
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v---D~~v~~~vl~  206 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI---DKNIDDHIKD  206 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe---CCCCCHHHHh
Confidence            45778888899999999999999999999999999865  4554444334   3444455433

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.33  E-value=0.98  Score=43.98  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=66.9

Q ss_pred             CCeEEEEEE---eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLS---FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~---~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      ++...|+|.   ..+++|.++++...|.+.|+||..-.... .+.- -.|.|..          +..+++.+.|.+.+..
T Consensus       258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~~~-Is~~V~~----------~d~~~a~~~L~~~~~~  325 (401)
T TIGR00656       258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SETS-ISLTVDE----------TDADEAVRALKDQSGA  325 (401)
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CCce-EEEEEeH----------HHHHHHHHHHHHHHHh
Confidence            345577777   57889999999999999999997443211 1211 1244422          2233333344332211


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA  247 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A  247 (295)
                        .                       . ...|.++   .+...|.|.+.   ++||+++++.++|.+.|+||...
T Consensus       326 --~-----------------------~-~~~i~~~---~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i  371 (401)
T TIGR00656       326 --A-----------------------G-LDRVEVE---EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI  371 (401)
T ss_pred             --c-----------------------C-CceEEEe---CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence              0                       0 0012211   24577777765   79999999999999999999853

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.19  E-value=0.06  Score=39.06  Aligned_cols=27  Identities=22%  Similarity=0.486  Sum_probs=25.1

Q ss_pred             CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          225 DRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       225 DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                      |+||.|.+|+.+|...|+||.+..+..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~   27 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGP   27 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence            789999999999999999999999987

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.18  E-value=0.1  Score=37.75  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE  137 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~  137 (295)
                      +.+.+..+|+||.+..++++|.++|+||.+....-.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~   37 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPS   37 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEecc
Confidence            578899999999999999999999999998866544

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.09  E-value=0.078  Score=38.44  Aligned_cols=56  Identities=13%  Similarity=0.221  Sum_probs=37.5

Q ss_pred             CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          110 DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       110 DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      |+||.|.+|+++|...|+||.+-.+....+.-.-.+.++-  +|.    ++.++.|...|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v--~~~----~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV--SGD----DREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE--ES-----CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE--eeC----chhHHHHHHHHhc
Confidence            7899999999999999999999999885443222233333  232    1455667776665

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=95.05  E-value=0.017  Score=41.47  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=30.4

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      +.+.+.|+||++++++.+|++.|+||......+.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~   36 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRG   36 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCC
Confidence            67799999999999999999999999887665444

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK06635 aspartate kinase; Reviewed

Probab=95.00  E-value=0.5  Score=46.11  Aligned_cols=109  Identities=17%  Similarity=0.265  Sum_probs=66.5

Q ss_pred             eEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022552          101 ATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP  178 (295)
Q Consensus       101 ~t~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~  178 (295)
                      ...|+|. ..+++|.++++..+|.+.|+||..-......++.. -.|.|..          +..++....|.+ +.. +.
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~-~~  329 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKD-EI  329 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHH-Hc
Confidence            3444444 57889999999999999999999654433332122 2344422          222333333333 110 00


Q ss_pred             CchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022552          179 ESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       179 ~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                                  +            ...|.+.+   +..++.|.+   .|+||.+++|.++|++.|++|....
T Consensus       330 ------------~------------~~~i~~~~---~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~  375 (404)
T PRK06635        330 ------------G------------AESVTYDD---DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS  375 (404)
T ss_pred             ------------C------------cceEEEcC---CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence                        0            00122222   447777765   6999999999999999999998853

>PRK11899 prephenate dehydratase; Provisional

Probab=94.92  E-value=0.21  Score=46.85  Aligned_cols=53  Identities=15%  Similarity=0.154  Sum_probs=43.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCC
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA  268 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~  268 (295)
                      .|.|-+...|+||.|+++-..|+++|||+.+.+..-.+.+ -+=.|||.-+|..
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~  247 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP  247 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC
Confidence            5778788899999999999999999999999999866544 5557888547754

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=94.77  E-value=0.02  Score=49.79  Aligned_cols=49  Identities=18%  Similarity=0.235  Sum_probs=45.1

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      ++.+|.+.+.||||++..|++...++|+|+...+++..|+...-+..++
T Consensus         4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis   52 (176)
T COG2716           4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS   52 (176)
T ss_pred             cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe
Confidence            4689999999999999999999999999999999999999888777774

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.71  E-value=0.13  Score=54.31  Aligned_cols=62  Identities=19%  Similarity=0.302  Sum_probs=47.2

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSS-LSQVLVNCLR  282 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~  282 (295)
                      ...|.|.+.||+|||.+|++++++.++||.++.+.+..  +.+.-.|.|.     +.+- ++..|.+.|+
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~  730 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKLN  730 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            57899999999999999999999999999999998753  4555555552     2222 5566666655

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.67  E-value=0.46  Score=34.87  Aligned_cols=64  Identities=16%  Similarity=0.285  Sum_probs=42.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      +.+..+|+||-|+++..+|+++|+||.+-.-..... ...-.|+|.-  +|..  ++...+.+...|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~--~~~~--~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF--EGHI--DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ECCC--CCHHHHHHHHHHHH
Confidence            345568999999999999999999999886555443 2233466766  3531  12444444444443

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.60  E-value=0.32  Score=51.25  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=53.6

Q ss_pred             EEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHH
Q 022552           90 HVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERI  165 (295)
Q Consensus        90 ~V~i~~~~~---~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L  165 (295)
                      .|.+.++..   .-.+.|.|.+.||+|+|++|+.+|+..++||.+.++.+..++. .-.|.|.-       .+.+.+++|
T Consensus       612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i  684 (702)
T PRK11092        612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANI  684 (702)
T ss_pred             eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHH
Confidence            454554432   2234789999999999999999999999999999987776544 33344432       234677777


Q ss_pred             HHHHHH
Q 022552          166 RLTIIN  171 (295)
Q Consensus       166 ~~~L~~  171 (295)
                      ...|+.
T Consensus       685 ~~~Lr~  690 (702)
T PRK11092        685 MRKIRV  690 (702)
T ss_pred             HHHHhC
Confidence            777765

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.52  E-value=0.23  Score=52.58  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=53.4

Q ss_pred             EEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC-CeE-EEEEEEeecCCCCCCCChHHHHH
Q 022552           90 HVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG-SVK-QTKFFITRLDTGRKVEDPDLLER  164 (295)
Q Consensus        90 ~V~i~~~~~---~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~-~~~-~D~F~V~~~~~g~~~~d~~~le~  164 (295)
                      .|.+.+...   .-...|.|.+.||+|||++|+.+|++.++||...++.+.. ++. .-.|.|.-       .+.+.+.+
T Consensus       652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~  724 (743)
T PRK10872        652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGR  724 (743)
T ss_pred             EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHH
Confidence            444554432   1234789999999999999999999999999999997764 444 33344432       23467787


Q ss_pred             HHHHHHH
Q 022552          165 IRLTIIN  171 (295)
Q Consensus       165 L~~~L~~  171 (295)
                      |...|++
T Consensus       725 l~~~L~~  731 (743)
T PRK10872        725 VLGKLNQ  731 (743)
T ss_pred             HHHHHhc
Confidence            7777765

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=94.52  E-value=0.23  Score=52.30  Aligned_cols=62  Identities=11%  Similarity=0.177  Sum_probs=46.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSS-LSQVLVNCLR  282 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~  282 (295)
                      ...|.|.+.||+|+|.+|++++++.++||.++.+.+.. ..+.-.|.+.     +.+- ++..|.+.|+
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr  689 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT-----ARDRVHLANIMRKIR  689 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            67899999999999999999999999999999988765 3444445442     1122 5556666554

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.44  E-value=0.65  Score=36.18  Aligned_cols=70  Identities=14%  Similarity=0.273  Sum_probs=47.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      .+.+.+.+..+|+||-|+++...|+.+|+|+.+-.-...+.. ..-.|+|..  +|. . + ..++.+-..|.+.+
T Consensus        12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~-~-~-~~~~~~l~~L~~~~   82 (90)
T cd04931          12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK-S-A-PALDPIIKSLRNDI   82 (90)
T ss_pred             CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-C-C-HHHHHHHHHHHHHh
Confidence            344667777799999999999999999999987666555432 234588876  454 1 2 34444444444434

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=94.32  E-value=0.27  Score=51.67  Aligned_cols=62  Identities=19%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChH-HHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSS-LSQVLVNCLR  282 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~-~~~~L~~~L~  282 (295)
                      .+.|.|.+.||+|+|.+|++++++.++||.++.+.+.. +.+.-.|.|.     +.+- ++..|...|+
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ie-----V~~~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVE-----IKNYKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence            67899999999999999999999999999999998764 3333334441     2222 5566666654

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=94.11  E-value=0.28  Score=40.00  Aligned_cols=53  Identities=11%  Similarity=0.079  Sum_probs=42.7

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeee-eEEEEEeCCCC
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAK-DKFHVSYGGAA  268 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~-D~F~V~~~G~~  268 (295)
                      .+.|-+...|+||-|++|-..|+.+|||+.+.+....+.... =.|||.-+|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~   94 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR   94 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence            577777779999999999999999999999999887655543 45777546654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=94.07  E-value=0.39  Score=50.46  Aligned_cols=64  Identities=19%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+.|.|.+.||+|+|++|+.+|+.++.||.+.++.+..++.. -.|.|.-       .+.+.+.+|...|+.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~~  674 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIKT  674 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHhC
Confidence            347899999999999999999999999999999987754542 2344432       234677777776654

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=94.01  E-value=0.33  Score=50.87  Aligned_cols=76  Identities=17%  Similarity=0.170  Sum_probs=54.9

Q ss_pred             cEEEEeecCC---CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEE-EEEeecCCCCCCCChHHHHH
Q 022552           89 PHVLIDQDSN---SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK-FFITRLDTGRKVEDPDLLER  164 (295)
Q Consensus        89 p~V~i~~~~~---~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~-F~V~~~~~g~~~~d~~~le~  164 (295)
                      ..|.+.++.+   .-.+.|.|.+.||+|+|.+|+.+|+..+.||.+....+..+++..+ |.+.       +.+...+.+
T Consensus       612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~-------v~n~~~L~~  684 (701)
T COG0317         612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE-------VKNLNHLGR  684 (701)
T ss_pred             eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE-------ECcHHHHHH
Confidence            4556665554   3445799999999999999999999999999999998875554322 3332       223467777


Q ss_pred             HHHHHHH
Q 022552          165 IRLTIIN  171 (295)
Q Consensus       165 L~~~L~~  171 (295)
                      |...|.+
T Consensus       685 i~~~l~~  691 (701)
T COG0317         685 VLARLKQ  691 (701)
T ss_pred             HHHHHhc
Confidence            7777665

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.81  E-value=0.14  Score=50.55  Aligned_cols=61  Identities=20%  Similarity=0.302  Sum_probs=48.6

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHH
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV  278 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~  278 (295)
                      ..+.|-+.-.|+||.+..|+.+|+++|+||...+..+.|+.|.-+|-+  ++ .+.++.+++|+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~--D~-~~~~~~~~~i~  397 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV--DA-DYAEEALDALK  397 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe--CC-CCcHHHHHHHH
Confidence            467788899999999999999999999999999999999777766655  44 44444444444

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=93.79  E-value=0.33  Score=45.55  Aligned_cols=55  Identities=15%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL  269 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l  269 (295)
                      ..|.|-+..+|+||-|+++-..|+.+|||+.+.+..-.+.. .+=.|||.-.|..-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~  248 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHID  248 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcC
Confidence            37889999999999999999999999999999999755544 55568885466653

>PRK06291 aspartate kinase; Provisional

Probab=93.46  E-value=2.6  Score=42.17  Aligned_cols=110  Identities=12%  Similarity=0.183  Sum_probs=68.8

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      .+...|+|.+.   +.+|+++++...|+++|+||..-...+....+  .|.|..          +..++....|.+.+.+
T Consensus       319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~----------~d~~~av~~L~~~~~~  386 (465)
T PRK06291        319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDE----------ADLEKALKALRREFGE  386 (465)
T ss_pred             CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeH----------HHHHHHHHHHHHHHHH
Confidence            34567777754   78999999999999999999865433322222  244432          2223333334333321


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEE
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEI  249 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I  249 (295)
                      ...                          ..|.+.+   +..+|.|.+.   ++||++.++..+|.+.||+|....-
T Consensus       387 ~~~--------------------------~~i~~~~---~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isq  434 (465)
T PRK06291        387 GLV--------------------------RDVTFDK---DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQ  434 (465)
T ss_pred             hcC--------------------------cceEEeC---CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEe
Confidence            000                          0122222   4577777775   7999999999999999999985543

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=93.38  E-value=0.36  Score=35.00  Aligned_cols=43  Identities=14%  Similarity=0.246  Sum_probs=33.3

Q ss_pred             ceEEEEEEeC----CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          215 KRSLLYIETA----DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       215 ~~t~IeV~a~----DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      +...|.|.+.    |.||++++|+..|++.||+|....  |   .-.+.|.|
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV   51 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILV   51 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEE
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEE
Confidence            4567778777    899999999999999999998776  3   23455666

>PRK08210 aspartate kinase I; Reviewed

Probab=93.32  E-value=4.9  Score=39.25  Aligned_cols=100  Identities=16%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             CCeEEEEEEeCCC-ccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccC
Q 022552           99 SDATIVQLSFGDR-LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYH  177 (295)
Q Consensus        99 ~~~t~V~V~~~Dr-pGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~  177 (295)
                      .+...|+|...+. +|.+++|...|.+.|+||..-..+  .+..  .|.+..          +..+++...|.+ +.   
T Consensus       269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~--~~~i--s~~v~~----------~~~~~a~~~l~~-~~---  330 (403)
T PRK08210        269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF--PTEV--VFTVSD----------EDSEKAKEILEN-LG---  330 (403)
T ss_pred             CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec--CceE--EEEEcH----------HHHHHHHHHHHH-hC---
Confidence            3455677776554 999999999999999999976443  2221  244422          222333333322 10   


Q ss_pred             CCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEE
Q 022552          178 PESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVES  246 (295)
Q Consensus       178 ~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~  246 (295)
                      .                           .+.+.   .+...|.|.+.   ++||++.++.++|.+.|++|..
T Consensus       331 ~---------------------------~v~~~---~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        331 L---------------------------KPSVR---ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             C---------------------------cEEEe---CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            0                           01111   13466767665   8999999999999999999974

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.28  E-value=0.29  Score=42.66  Aligned_cols=40  Identities=13%  Similarity=0.119  Sum_probs=36.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ  142 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~  142 (295)
                      -+.+.+.++||.|.+++++++++|.||..|+.+..+++-.
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~   43 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEK   43 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCce
Confidence            4678899999999999999999999999999999998753

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.03  E-value=0.63  Score=33.71  Aligned_cols=60  Identities=12%  Similarity=0.117  Sum_probs=40.7

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe-CCCCCChHHHHHHHHHHHH
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY-GGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~-~G~~l~~~~~~~L~~~L~~  283 (295)
                      +.|.-+||||=|.+++++++. |.||...+-.-.+.....++..-. .+    .+..+++.++|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence            357789999999999999999 999998877655533333333222 22    2356677776654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=93.00  E-value=0.92  Score=34.49  Aligned_cols=61  Identities=5%  Similarity=0.061  Sum_probs=38.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEE-EEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTK-FFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~-F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ++.|.-+|+||-|.+++.+|.  +.||....-.....+.... +.+...  +.    ++..+.+.+.|++
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~--~~----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA--NG----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC--Cc----HHHHHHHHHHHHH
Confidence            578899999999999999999  6777754443333222222 333321  10    3566777777655

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=92.84  E-value=11  Score=38.66  Aligned_cols=139  Identities=15%  Similarity=0.204  Sum_probs=81.2

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eEEE-EEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552           99 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQT-KFFITRLDTGRKVEDPDLLERIRLTIINNLL  174 (295)
Q Consensus        99 ~~~t~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~~D-~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~  174 (295)
                      .+...|++. .++++|+++++.+.|+++|++|..-......+  +..+ .|.+..          +.+.++...+++ +.
T Consensus       437 ~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----------~~~~~~~~~l~~-l~  505 (587)
T PRK07431        437 RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----------EDREAAQKVLRE-LA  505 (587)
T ss_pred             CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HH
Confidence            344455554 67889999999999999999998654422122  2222 243322          222333332333 22


Q ss_pred             ccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          175 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       175 ~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                      ...+                         ...+.+.   .+...|.|.+.   .+||++.++.++|.+.||+|....  |
T Consensus       506 ~~~~-------------------------~~~i~~~---~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~  555 (587)
T PRK07431        506 KQLP-------------------------GAEVEDG---PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T  555 (587)
T ss_pred             HhcC-------------------------CceEEEe---CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c
Confidence            1000                         0011111   24577888875   889999999999999999997665  2


Q ss_pred             cCCeeeeE-EEEEeCCCCCChHHHHHHHHHHHHHcCCC
Q 022552          252 EGLVAKDK-FHVSYGGAALNSSLSQVLVNCLRYYLRRP  288 (295)
Q Consensus       252 ~g~~a~D~-F~V~~~G~~l~~~~~~~L~~~L~~~L~~~  288 (295)
                         ....+ |.|.       .+..++...+|++.+.-.
T Consensus       556 ---S~~~Is~vV~-------~~~~~~av~~Lh~~f~~~  583 (587)
T PRK07431        556 ---SEIRTSCVVA-------EDDGVKALQAVHQAFGLA  583 (587)
T ss_pred             ---cceEEEEEEe-------HHHHHHHHHHHHHHhccC
Confidence               33333 5551       224456667777776443

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=92.36  E-value=0.9  Score=44.53  Aligned_cols=54  Identities=17%  Similarity=0.214  Sum_probs=43.8

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCC
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAA  268 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~  268 (295)
                      +.|.|-+...|+||.|+++-..|+.+|||+.+.+..-.+ ..-+=.|||.-.|..
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~  350 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANL  350 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCC
Confidence            467777888899999999999999999999999998544 446667888546744

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.29  E-value=0.091  Score=40.23  Aligned_cols=32  Identities=22%  Similarity=0.198  Sum_probs=28.9

Q ss_pred             EEEEEeCC-CccHHHHHHHHHHHCCceEEEEEE
Q 022552          103 IVQLSFGD-RLGALIDTMNALKDLGLDVAKGTV  134 (295)
Q Consensus       103 ~V~V~~~D-rpGLl~~I~~vL~~~glnI~~A~I  134 (295)
                      +|+|.++| +.|++++++++|+++|+||.+-+-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~   33 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR   33 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            48999999 999999999999999999986554

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.21  E-value=0.098  Score=40.06  Aligned_cols=32  Identities=9%  Similarity=0.276  Sum_probs=28.5

Q ss_pred             EEEEEeCC-CcchHHHHHHHHHhCCceEEEEEE
Q 022552          218 LLYIETAD-RPGLLVEIMKIIADVNVDVESAEI  249 (295)
Q Consensus       218 ~IeV~a~D-RPGLL~dIt~~L~~~gI~I~~A~I  249 (295)
                      +|+|.|.| ++|++++|+++|+++|+||...+-
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~   33 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR   33 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            37889999 999999999999999999976554

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK08818 prephenate dehydrogenase; Provisional

Probab=92.16  E-value=0.38  Score=46.87  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=40.6

Q ss_pred             ceEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCC
Q 022552          215 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGG  266 (295)
Q Consensus       215 ~~t~IeV~a~-DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G  266 (295)
                      ..+.|.+.-+ |+||-|++|+.+|+++||||.+.++ .....-+-.|+|.-.+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~  345 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP  345 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence            5688888886 9999999999999999999999999 4333333348886444

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.06  E-value=0.51  Score=47.97  Aligned_cols=62  Identities=16%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  279 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~~L~~  279 (295)
                      +.+.+-+...|+||.+..|+.+|.++||||...++.-.  |+.+.=++.+   .++++++.+++|++
T Consensus       451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~---D~~v~~~~l~~i~~  514 (526)
T PRK13581        451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV---DDPVPEEVLEELRA  514 (526)
T ss_pred             CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC---CCCCCHHHHHHHhc
Confidence            45666677799999999999999999999999998764  3444443333   44666666666553

>PRK09034 aspartate kinase; Reviewed

Probab=91.85  E-value=13  Score=37.03  Aligned_cols=112  Identities=14%  Similarity=0.251  Sum_probs=67.2

Q ss_pred             CCeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      .+.+.|++.+   .+++|.++++...|+++|+||.--  . . +..--.|.|...   . . +...+..+...|...+. 
T Consensus       306 ~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~-s-s~~sis~~v~~~---~-~-~~a~~~~l~~el~~~~~-  375 (454)
T PRK09034        306 KGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--P-S-GIDDLSIIIRER---Q-L-TPKKEDEILAEIKQELN-  375 (454)
T ss_pred             CCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--c-C-CCcEEEEEEeHH---H-h-hHHHHHHHHHHHHHhhC-
Confidence            3456777764   678999999999999999999874  2 2 222123556431   1 1 00000222222211110 


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                                                 . ..|.+.+   +...|.|.+   .++||++.++..+|++.||+|....-.+
T Consensus       376 ---------------------------~-~~I~~~~---~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        376 ---------------------------P-DELEIEH---DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             ---------------------------C-ceEEEeC---CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence                                       0 0122222   457777754   3889999999999999999998876444

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=91.77  E-value=1.4  Score=32.64  Aligned_cols=46  Identities=15%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEee
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR  149 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~  149 (295)
                      +.+..+|+||-|+++...|+.+|+|+..-.-....+. ..-.|+|.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            4455589999999999999999999987666555443 234577876

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=91.59  E-value=0.54  Score=40.98  Aligned_cols=50  Identities=24%  Similarity=0.264  Sum_probs=39.3

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCC
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAA  268 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~  268 (295)
                      +.+.+.++||.|.+++-++++.|.||.+++-...++--....|+.-+|-.
T Consensus         5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~   54 (218)
T COG1707           5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGID   54 (218)
T ss_pred             eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCC
Confidence            67889999999999999999999999999987766544444555434443

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=91.46  E-value=1.3  Score=36.58  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ  142 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~  142 (295)
                      ++-|..+|+||=++.|.++|.+.++|+-....+++.....
T Consensus        71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KA  110 (142)
T COG4747          71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKA  110 (142)
T ss_pred             EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceE
Confidence            6788899999999999999999999999999999877553

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=91.36  E-value=1.7  Score=32.44  Aligned_cols=49  Identities=16%  Similarity=0.340  Sum_probs=37.0

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCC
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  154 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~  154 (295)
                      +.+..+|+||-|+++...|+.+|+|+..-.-...+.. +.-.|+|..  +|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~--e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC--ECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC
Confidence            4455689999999999999999999987766665442 334588876  454

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00657 asp_kinases aspartate kinase

Probab=91.30  E-value=7.5  Score=38.47  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=64.9

Q ss_pred             CCeEEEEEEeCCC--ccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022552           99 SDATIVQLSFGDR--LGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  176 (295)
Q Consensus        99 ~~~t~V~V~~~Dr--pGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~  176 (295)
                      ++...|+|.+.+-  +|.++++...|.++|++|......+....+  .|.|..          +..++....|.. +.+.
T Consensus       300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sI--s~~I~~----------~~~~~a~~~L~~-~~~~  366 (441)
T TIGR00657       300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSI--SFTVDK----------EDADQAKTLLKS-ELNL  366 (441)
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceE--EEEEEH----------HHHHHHHHHHHH-HHHh
Confidence            3455677765333  799999999999999999866422221111  244432          112222222222 1100


Q ss_pred             CCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022552          177 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       177 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                      ..                         ...|.+.+   +.+.|.|.+   .++||++++|.++|++.|++|....
T Consensus       367 ~~-------------------------~~~I~~~~---~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       367 SA-------------------------LSSVEVEK---GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             cC-------------------------cceEEEcC---CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            00                         00122222   457778854   4889999999999999999998775

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK08198 threonine dehydratase; Provisional

Probab=91.09  E-value=2.2  Score=41.73  Aligned_cols=67  Identities=15%  Similarity=0.175  Sum_probs=46.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEc----CCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTE----GSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~----~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .....+.|.-+|+||-|++++..++++|.||.+-.....    +.+...+....+.      .+++..+.|.+.|++
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~l~~~L~~  395 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET------RGPEHIEEILDALRD  395 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            344589999999999999999999999999998876542    2233333332221      134566666666654

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.09  E-value=0.71  Score=33.41  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=29.6

Q ss_pred             CCeEEEEEEeC----CCccHHHHHHHHHHHCCceEEEEE
Q 022552           99 SDATIVQLSFG----DRLGALIDTMNALKDLGLDVAKGT  133 (295)
Q Consensus        99 ~~~t~V~V~~~----DrpGLl~~I~~vL~~~glnI~~A~  133 (295)
                      .+...|+|.++    |.||+.++++..|++.|+||....
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            45667888888    799999999999999999998765

>PRK06382 threonine dehydratase; Provisional

Probab=91.07  E-value=0.63  Score=45.69  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=33.1

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      ..+.+.|.-+|+||-|.+|+++|.++|+||.+....
T Consensus       329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~  364 (406)
T PRK06382        329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD  364 (406)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence            378999999999999999999999999999888764

>PRK06382 threonine dehydratase; Provisional

Probab=90.89  E-value=1.7  Score=42.68  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=46.4

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE----EcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN----TEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~----T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ...+.+.|..+|+||-|.+++.+|.++|+||.+-...    ....+. .-.|.|...       +++..+.|.+.|++
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~~  398 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALRE  398 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHHH
Confidence            5667899999999999999999999999999987664    222222 334555431       23455566666654

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=90.78  E-value=0.83  Score=47.96  Aligned_cols=40  Identities=20%  Similarity=0.324  Sum_probs=36.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  255 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~  255 (295)
                      .+.|.|.+.||+|||.+|+++|+..++||.+....+.+.+
T Consensus       627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~  666 (701)
T COG0317         627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQ  666 (701)
T ss_pred             EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCc
Confidence            7889999999999999999999999999999999876444

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=90.50  E-value=0.64  Score=35.10  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=44.1

Q ss_pred             EEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eE--EEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          104 VQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VK--QTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       104 V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~--~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      |+++++-||-.|++++-+|+.+|.-|.+|.|.....  .-  +-.|.+.+  .++.+.......++.+.+...
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e--~~~~~~~~~~r~~i~drv~~~   73 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE--HDRLKLGGRQRSKVVDRVTKT   73 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC--CCccccchHHHHHHHHHHHHH
Confidence            678899999999999999999999999999965432  21  33344444  232333233334555555443

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=90.49  E-value=3.7  Score=30.57  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=38.6

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          223 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       223 a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      ..+.||++++|.++|+++|++|...-  + ++ ..=.|-+.+...-+.++..++|.+.|.+
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~~~~~~~~~~~l~~el~~   67 (75)
T cd04935          11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDPNGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence            45889999999999999999999884  2 33 2233445332211444466777777765

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=90.45  E-value=0.74  Score=46.82  Aligned_cols=62  Identities=13%  Similarity=0.277  Sum_probs=45.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  279 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~~L~~  279 (295)
                      +.+.+-+.-.||||.+..|+.+|.+++|||..+++...  |+.+.=++.+   .++++++.+++|++
T Consensus       450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~v~~~~l~~i~~  513 (525)
T TIGR01327       450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQPVPDEVLEEIKA  513 (525)
T ss_pred             CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCCCCHHHHHHHhc
Confidence            34566667799999999999999999999999998754  4444433333   44666666666654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=90.40  E-value=1.8  Score=38.64  Aligned_cols=41  Identities=12%  Similarity=0.299  Sum_probs=35.6

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS  139 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~  139 (295)
                      +....+.+.-.|+||....++.+|.++|+||...++.....
T Consensus       146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~  186 (208)
T TIGR00719       146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDI  186 (208)
T ss_pred             CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCC
Confidence            44556777779999999999999999999999999988753

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK11898 prephenate dehydratase; Provisional

Probab=90.31  E-value=1.9  Score=40.43  Aligned_cols=68  Identities=15%  Similarity=0.166  Sum_probs=48.2

Q ss_pred             ceEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          215 KRSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       215 ~~t~IeV~a~D-RPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      +.+.|-+...+ +||-|+++-..|+++|||+.+.+..-...+ -+=.|||.-+|.. .++..+++.+.|++
T Consensus       195 ~ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~-~~~~~~~al~~L~~  264 (283)
T PRK11898        195 DKTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI-DDVLVAEALKELEA  264 (283)
T ss_pred             CeEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC-CCHHHHHHHHHHHH
Confidence            35666677655 699999999999999999999998765444 4456888656754 44444454455544

>PRK06349 homoserine dehydrogenase; Provisional

Probab=90.25  E-value=1.5  Score=43.47  Aligned_cols=51  Identities=25%  Similarity=0.347  Sum_probs=40.8

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEe
Q 022552          214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSY  264 (295)
Q Consensus       214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~  264 (295)
                      ...+.|.+...|+||.|.+|+.+|.++|++|.+..-....+....++.+++
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            346889999999999999999999999999998876543334455666665

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.07  E-value=0.64  Score=44.82  Aligned_cols=49  Identities=18%  Similarity=0.407  Sum_probs=41.0

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      +..+.|.|.-+||||-|.+|+..|.+.||||.+.+|.-.-+...-+..+
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~  336 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQI  336 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEE
Confidence            4589999999999999999999999999999999996555554444444

>PRK09224 threonine dehydratase; Reviewed

Probab=89.79  E-value=17  Score=36.93  Aligned_cols=129  Identities=12%  Similarity=0.184  Sum_probs=76.3

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP  178 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~  178 (295)
                      ..-..+.|.-|||||-|.+++.+|.  +.||..-+-...+.....+|..... .+.    +...+.|.+.|++.  ++..
T Consensus       326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~~~----~~~~~~i~~~L~~~--gy~~  396 (504)
T PRK09224        326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-SRG----QEERAEIIAQLRAH--GYPV  396 (504)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-CCh----hhHHHHHHHHHHHc--CCCe
Confidence            4456889999999999999999998  6888876554444444444544332 121    12367777777651  2111


Q ss_pred             C-c-hhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552          179 E-S-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       179 ~-~-~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      . + ...++.         ....++ +..+   .+...+.-++.+.=+.|||-|-+....|. -+-||...+-.
T Consensus       397 ~~ls~ne~~k---------~h~r~~-~g~~---~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr  456 (504)
T PRK09224        397 VDLSDDELAK---------LHVRYM-VGGR---PPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR  456 (504)
T ss_pred             EECCCCHHHH---------HHHHhc-cCCC---CCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence            0 0 011110         000001 0000   00011346788889999999999999777 77888888774

>PRK07431 aspartate kinase; Provisional

Probab=89.74  E-value=12  Score=38.45  Aligned_cols=124  Identities=18%  Similarity=0.272  Sum_probs=72.4

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      .+...|.|.+.   +.+|+++++..+|++.|+||..-.   ..+..+ .|.|..          +..++..+.|.+.+..
T Consensus       346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~----------~d~~~av~~Lh~~f~~  411 (587)
T PRK07431        346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDA----------EDGDKALRAVCEAFEL  411 (587)
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcH----------HHHHHHHHHHHHHhcc
Confidence            45667888875   799999999999999999997544   222222 244433          2234444445554422


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEE-ecCCCCceEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIH-VKEDGPKRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~-i~~~~~~~t~IeV~-a~DRPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      +..  ...+         .|.+.. .+ ...|. +... .+...|+|. ..++||++++|...|+++|++|.....+
T Consensus       412 ~~~--~~~~---------~~~~~~-~~-~~~v~gIa~~-~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~  474 (587)
T PRK07431        412 EDS--QIEI---------NPTASG-QD-EPEVRGVALD-RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQS  474 (587)
T ss_pred             CCc--cccc---------CccccC-CC-CCcEEEEEcc-CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEec
Confidence            110  0000         000000 00 11122 2111 244555554 5688999999999999999999988653

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=89.66  E-value=9  Score=41.25  Aligned_cols=113  Identities=12%  Similarity=0.200  Sum_probs=69.6

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      .+.+.|+|.+.   +++|+++++...|.++|+||......+.....  .|.|..          +..++....|.+.+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sI--sf~V~~----------~d~~~av~~L~~~f~~  380 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSI--SFCVPQ----------SDAAKAKRALEEEFAL  380 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceE--EEEEeH----------HHHHHHHHHHHHHHHH
Confidence            55667888754   68999999999999999999765443322111  254533          1223333333332211


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                             .+.    .     .+      ...|.+.   .+..+|.|.+.   ++||++.++.++|.+.||+|....
T Consensus       381 -------el~----~-----~~------~~~i~~~---~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        381 -------ELK----E-----GL------LEPLEVE---ENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             -------Hhc----c-----CC------cceEEEe---CCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence                   000    0     00      0012222   24577777775   789999999999999999998764

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=89.64  E-value=1.6  Score=43.72  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=44.1

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeee--EEEEEeCCCC
Q 022552          214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD--KFHVSYGGAA  268 (295)
Q Consensus       214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D--~F~V~~~G~~  268 (295)
                      ...+.|-+...|+||-|+++-+.|+++|||+.+.+.........+  .|||.-+|..
T Consensus        29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~   85 (464)
T TIGR01270        29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH   85 (464)
T ss_pred             CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence            346777788899999999999999999999999998766545444  6888656654

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.08  E-value=0.84  Score=45.01  Aligned_cols=48  Identities=15%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEE
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  147 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V  147 (295)
                      ....|.+.-.|+||.+++|+..|+++|+||..-++.+.++..+-+|.+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~  384 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV  384 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence            556788899999999999999999999999999998888666544544

>PLN02317 arogenate dehydratase

Probab=88.93  E-value=2.7  Score=41.23  Aligned_cols=67  Identities=13%  Similarity=0.223  Sum_probs=48.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe---------------eeeEEEEEeCCCCCChHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV---------------AKDKFHVSYGGAALNSSLSQVLVNC  280 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~---------------a~D~F~V~~~G~~l~~~~~~~L~~~  280 (295)
                      .|.|-+.-.|+||-|+++-.+|+.+|||+.+.+..-...+               -+=.|||.-+|.. .++..+...+.
T Consensus       283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~-~d~~~~~aL~~  361 (382)
T PLN02317        283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM-ADPRAQNALAH  361 (382)
T ss_pred             cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc-CCHHHHHHHHH
Confidence            5778888899999999999999999999999998665433               2336888656643 34433444444


Q ss_pred             HHH
Q 022552          281 LRY  283 (295)
Q Consensus       281 L~~  283 (295)
                      |++
T Consensus       362 L~~  364 (382)
T PLN02317        362 LQE  364 (382)
T ss_pred             HHH
Confidence            443

>PRK09181 aspartate kinase; Validated

Probab=88.72  E-value=11  Score=38.09  Aligned_cols=105  Identities=11%  Similarity=0.183  Sum_probs=66.0

Q ss_pred             CeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022552          100 DATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  176 (295)
Q Consensus       100 ~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~  176 (295)
                      +.+.|+|.+.   +.+|+.+++...|.+.|++|.  -+.+....+  .|.|..  +      .++++++...|...+.. 
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~si--s~~v~~--~------~~~~~~~~~~L~~~~~~-  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNANTI--THYLWG--S------LKTLKRVIAELEKRYPN-  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCcEE--EEEEcC--C------hHHHHHHHHHHHHhcCC-
Confidence            5667787544   789999999999999999998  233332222  355532  1      12334443333321110 


Q ss_pred             CCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCC--CcchHHHHHHHHHhCCceEEEEEE
Q 022552          177 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD--RPGLLVEIMKIIADVNVDVESAEI  249 (295)
Q Consensus       177 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~D--RPGLL~dIt~~L~~~gI~I~~A~I  249 (295)
                                                  ..|..    .+..+|.|.+..  +||+..++.++|.+.||||....-
T Consensus       395 ----------------------------~~i~~----~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q  437 (475)
T PRK09181        395 ----------------------------AEVTV----RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ  437 (475)
T ss_pred             ----------------------------ceEEE----CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence                                        01211    244667776653  899999999999999999977653

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=88.56  E-value=4  Score=39.46  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEE
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVN  135 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~  135 (295)
                      ...+.|..+|+||.|++++..+++.|.||.+-...
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~  339 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD  339 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence            34899999999999999999999999999987544

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=88.36  E-value=5.6  Score=29.59  Aligned_cols=56  Identities=20%  Similarity=0.260  Sum_probs=36.5

Q ss_pred             eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHH-HHHHHHHHH
Q 022552          223 TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLS-QVLVNCLRY  283 (295)
Q Consensus       223 a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~-~~L~~~L~~  283 (295)
                      ..++||++++|..+|+++||+|...-  + ++ ..=.|-+.. .....+..+ ++|...|..
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~-~d~~~~~~~~~~l~~~l~~   67 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDN-TGSTSDQLLTQALLKELSQ   67 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEec-cccchhHHHHHHHHHHHHh
Confidence            56889999999999999999999884  2 33 333344533 222223323 366666655

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=88.20  E-value=3.1  Score=41.47  Aligned_cols=66  Identities=18%  Similarity=0.295  Sum_probs=48.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      .+.|-+...|+||-|++|-++|+++|||+.+.+..-.. ..-+=.|||.-+|..  ++..+++.+.|+.
T Consensus        16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~--~~~v~~aL~~Lk~   82 (436)
T TIGR01268        16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS--DRKLEGVIEHLRQ   82 (436)
T ss_pred             eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc--cHHHHHHHHHHHH
Confidence            57788888999999999999999999999999886543 334456888656654  2333444444443

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.20  E-value=1.9  Score=41.48  Aligned_cols=50  Identities=10%  Similarity=0.088  Sum_probs=41.2

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEe
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT  148 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~  148 (295)
                      +....|.|.-+|+||-++.|+..|...|+||.+-+|....+...-++.+.
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~  337 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS  337 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence            56789999999999999999999999999999999977766443334443

>PLN02551 aspartokinase

Probab=88.04  E-value=29  Score=35.51  Aligned_cols=114  Identities=16%  Similarity=0.234  Sum_probs=69.1

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      .+.+.|+|.+.   +++|.++++...|.++|++|.--.  +.....  .|.+...    ..   ...+.++..+.+.+..
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe~sI--s~~v~~~----~~---~~~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSI--SLTLDPS----KL---WSRELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccCCEE--EEEEehh----Hh---hhhhhHHHHHHHHHHH
Confidence            45567788655   689999999999999999998652  222122  3555431    11   1123333333332211


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~--DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                              |.           +   +   ..|.+.+   +..+|.|.+.  .+||++.++.++|++.||||....-.+
T Consensus       433 --------l~-----------~---~---~~V~v~~---~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        433 --------LE-----------K---I---AVVNLLQ---GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             --------hh-----------c---C---CeEEEeC---CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence                    10           0   0   1122222   3466666644  689999999999999999998776433

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=87.69  E-value=6.1  Score=27.48  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=31.6

Q ss_pred             EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          218 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       218 ~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      .|.+.+   .+.||++++|.++|.+.|++|....-.+ .+ ..=.|.+.
T Consensus         3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s~-~~is~~v~   49 (66)
T cd04922           3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-SE-RNISAVID   49 (66)
T ss_pred             EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-cc-cEEEEEEe
Confidence            455555   4889999999999999999998875444 22 33335563

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=87.66  E-value=33  Score=34.44  Aligned_cols=108  Identities=18%  Similarity=0.262  Sum_probs=65.2

Q ss_pred             CCeEEEEEEeCC---CccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLSFGD---RLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~~~D---rpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      .+.+.|+|.+..   .+|.++++...|.++|+||..-.......+  -.|.+...          ...+....|.+....
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~----------~~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES----------DAPRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh----------hHHHHHHHHHHHHhh
Confidence            455667776443   459999999999999999975433332233  23555431          122333333332211


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEE---eCCCcchHHHHHHHHHhCCceEEEEE
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE---TADRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~---a~DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                        .     +                 .   .|.+..   +...|.+.   ....||..+++.++|++.||||....
T Consensus       373 --~-----~-----------------~---~v~~~~---~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         373 --L-----L-----------------A---EVEVEE---GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             --h-----c-----------------c---eEEeeC---CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence              0     0                 0   122222   23444554   45789999999999999999999887

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=87.34  E-value=4.3  Score=33.02  Aligned_cols=49  Identities=4%  Similarity=0.114  Sum_probs=37.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEee
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITR  149 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~  149 (295)
                      .+.+.+..+|+||-|+++...|+.+|+|+.+-.-...+.. ..-.|+|..
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            4566666699999999999999999999987666655443 223477766

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK12483 threonine dehydratase; Reviewed

Probab=87.13  E-value=32  Score=35.18  Aligned_cols=155  Identities=12%  Similarity=0.147  Sum_probs=86.0

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHH-HHHHHHHHHhhcccC
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLL-ERIRLTIINNLLKYH  177 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~l-e~L~~~L~~~L~~~~  177 (295)
                      .....+.|.-+||||-|.+++.+|...  ||.+-.-...+.+...++..... .     +++.. +.|...|++.  +..
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-~-----~~~~~~~~i~~~l~~~--g~~  412 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT-H-----PRHDPRAQLLASLRAQ--GFP  412 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe-C-----ChhhhHHHHHHHHHHC--CCC
Confidence            456689999999999999999999988  88766555443333333433332 1     23444 6777776651  211


Q ss_pred             CC-c-hhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEEEEecCC
Q 022552          178 PE-S-SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIAD-VNVDVESAEIDTEGL  254 (295)
Q Consensus       178 ~~-~-~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~-~gI~I~~A~I~T~g~  254 (295)
                      .. + ...+++     .+    ..++ +..+   .+...+.-++.|.=+.|||=|.+++++|.. .+|.-.+=+..  |.
T Consensus       413 ~~dlsdne~~k-----~h----~r~~-~g~~---~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~--~~  477 (521)
T PRK12483        413 VLDLTDDELAK-----LH----IRHM-VGGR---APLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNH--GA  477 (521)
T ss_pred             eEECCCCHHHH-----HH----HHhc-cCCC---CCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCC--CC
Confidence            10 0 011110     00    0000 0000   001123578888899999999999999997 46665554432  44


Q ss_pred             eeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          255 VAKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       255 ~a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      ....+|.    |-++.+.+.+++.+.|.
T Consensus       478 ~~a~v~v----gi~~~~~~~~~~~~~l~  501 (521)
T PRK12483        478 ADGRVLA----GLQVPEDERAALDAALA  501 (521)
T ss_pred             CceEEEE----EEeeChhHHHHHHHHHH
Confidence            4444444    21222344566666654

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=86.77  E-value=7.3  Score=28.84  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=36.8

Q ss_pred             CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          224 ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       224 ~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      .-.||++++|.++|+++|++|...-.   ++ ..=.|-+..  ..+.++.+++|.+.|.+
T Consensus        12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~--~~~~~~~l~~l~~el~~   65 (73)
T cd04934          12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM--ENAEDTNLDAAVKDLQK   65 (73)
T ss_pred             ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh--hhcChHHHHHHHHHHHH
Confidence            45699999999999999999998843   33 222344432  23334466677777765

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=86.66  E-value=4.3  Score=38.19  Aligned_cols=65  Identities=18%  Similarity=0.292  Sum_probs=47.5

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..|.+.+..+|+||.|+++.++|+.+|+|...-.-.-.+.+. .-.|+|.-  +|.. .+    ..+++.|++
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~-~~----~~v~~AL~e  258 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI-DD----PLVKEALEE  258 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc-Cc----HhHHHHHHH
Confidence            367888888899999999999999999999876666666543 34588876  4653 23    344555554

>PLN02550 threonine dehydratase

Probab=86.35  E-value=38  Score=35.26  Aligned_cols=152  Identities=9%  Similarity=0.124  Sum_probs=85.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCC-
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHP-  178 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~-  178 (295)
                      ....+.|.-+||||-|.+++.+|...  ||.+-.-....-+...++.....      .+++..+.|...|++.  +... 
T Consensus       416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~------~~~~~~~~i~~~l~~~--g~~~~  485 (591)
T PLN02550        416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV------HTEQELQALKKRMESA--QLRTV  485 (591)
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe------CCHHHHHHHHHHHHHC--CCCeE
Confidence            34678999999999999999999986  77765554432222323333321      1346778888877652  2111 


Q ss_pred             Cc-hhHhhhccccCccCCccccccc-ccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHh-CCceEEEEEEEecCCe
Q 022552          179 ES-SEQLAMGEAFGIKAPEKKLDVD-IATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIAD-VNVDVESAEIDTEGLV  255 (295)
Q Consensus       179 ~~-~~~La~~~~~~~~~~~r~~~~~-~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~-~gI~I~~A~I~T~g~~  255 (295)
                      ++ ...+++         .+..++. ....  +    .+.-++.+.=+.|||-|.++.++|.. .+|.-.+=+  ..|+.
T Consensus       486 ~l~~~~~~~---------~~LR~v~g~ra~--~----~~E~l~~v~fPErpGAl~~Fl~~lg~~~nITeF~YR--~~~~~  548 (591)
T PLN02550        486 NLTSNDLVK---------DHLRYLMGGRAI--V----KDELLYRFVFPERPGALMKFLDAFSPRWNISLFHYR--GQGET  548 (591)
T ss_pred             eCCCChHHh---------hhhhheeccccc--c----CceEEEEEEecCcCCHHHHHHHhhCCCCceeeEEee--cCCCC
Confidence            00 011211         1111111 1111  1    23478888899999999999998886 355555444  33444


Q ss_pred             eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          256 AKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       256 a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      .-.+|.    |-.+.+...++|.+.|.
T Consensus       549 ~a~vlv----Gi~v~~~e~~~l~~~l~  571 (591)
T PLN02550        549 GANVLV----GIQVPPEEMQEFKSRAN  571 (591)
T ss_pred             CccEEE----EEeeCHHHHHHHHHHHH
Confidence            333444    11222235566666654

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=85.77  E-value=3.9  Score=30.96  Aligned_cols=61  Identities=18%  Similarity=0.191  Sum_probs=36.2

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      ++.|.-+||||=|.+++++|...  ||....-.-.+ +.+.-.+.+.-.+.   .+..+++.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~~a--nI~~~~y~~~~~~~~~v~i~ie~~~~---~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIGPR--NITEFNYRYADEKDAHIFVGVSVANG---AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhCCC--ceeEEEEEccCCCeeEEEEEEEeCCc---HHHHHHHHHHHHH
Confidence            57888999999999999999944  44443333222 33333333432321   2355566666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=85.61  E-value=6.5  Score=38.02  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=43.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-----CCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-----GLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-----g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      ...+.|.-+||||-|.+|++.+++.|.||.+..-...     -+.+.=.+.+.-.+    ....++|.+.|.+
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~----~~~~~~i~~~L~~  373 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG----KEHLDEILKILRD  373 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence            5589999999999999999999999999988855421     12333334342222    2345566666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK11899 prephenate dehydratase; Provisional

Probab=84.94  E-value=8.9  Score=35.99  Aligned_cols=52  Identities=17%  Similarity=0.265  Sum_probs=41.0

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCC
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  154 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~  154 (295)
                      -|.+.+..+|+||.|+++.++|+..|+|+..-.-.-.+++ +.-.|+|.-  +|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC
Confidence            4667777799999999999999999999987776666554 244688876  565

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=84.11  E-value=4.9  Score=34.83  Aligned_cols=66  Identities=18%  Similarity=0.229  Sum_probs=46.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      ...+.+.-.|.||.|.++++.|+..|+||.+-.+..+.+.-.-...+.-  .|.    +..++++...|...
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv--~g~----~~~~EQi~kQL~kL   69 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV--SGD----EQVLEQIIKQLNKL   69 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE--cCC----cchHHHHHHHHHhh
Confidence            3478888999999999999999999999999888766543332222222  232    24567777776663

>PRK06349 homoserine dehydrogenase; Provisional

Probab=83.00  E-value=6.8  Score=38.79  Aligned_cols=51  Identities=14%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEee
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  149 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~  149 (295)
                      .....|.+...|+||.|++|++.|.++|+||.+-......++....+.+++
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            345688999999999999999999999999998766554444455566766

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=82.68  E-value=14  Score=26.02  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=24.0

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEE
Q 022552          218 LLYIETA---DRPGLLVEIMKIIADVNVDVE  245 (295)
Q Consensus       218 ~IeV~a~---DRPGLL~dIt~~L~~~gI~I~  245 (295)
                      .|.|.+.   ++||++.++.++|.+.|++|.
T Consensus         3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            4556654   789999999999999999995

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>PRK09084 aspartate kinase III; Validated

Probab=82.67  E-value=39  Score=33.71  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      .+...|+|.+.   +.+|.++++...|+++|+||.--.  +. + .--.|.|...  .  . .......+...+.+.+.+
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss-e-~sIs~~i~~~--~--~-~~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS-E-VSVSLTLDTT--G--S-TSTGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc-C-cEEEEEEech--h--h-hhhhhHHHHHHHHHHHhc
Confidence            45567888654   789999999999999999998664  22 2 1123556442  1  1 001112222233222211


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCc
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNV  242 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI  242 (295)
                        .                          ..|.+.   .+...|.|.|.   ++||++.++..+|.+.++
T Consensus       375 --~--------------------------~~i~~~---~~va~IsvvG~gm~~~~gv~arif~aL~~~nI  413 (448)
T PRK09084        375 --L--------------------------CRVEVE---EGLALVALIGNNLSKACGVAKRVFGVLEPFNI  413 (448)
T ss_pred             --C--------------------------CeEEEE---CCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence              0                          012221   24577888776   799999999999987544

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=82.00  E-value=5.9  Score=34.31  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=31.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      ..++.+--.|.||.|.+++-.|+..|+||.+..+.
T Consensus         4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~   38 (163)
T COG0440           4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVG   38 (163)
T ss_pred             eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEE
Confidence            35677778899999999999999999999999985

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=81.41  E-value=15  Score=25.51  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=27.8

Q ss_pred             EEEEEeC---CCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          218 LLYIETA---DRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       218 ~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                      +|.+.+.   ++||++++|.++|.+.|++|....-.+
T Consensus         3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~   39 (66)
T cd04919           3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA   39 (66)
T ss_pred             EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence            4555554   789999999999999999998876544

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=81.29  E-value=12  Score=27.37  Aligned_cols=62  Identities=23%  Similarity=0.277  Sum_probs=38.7

Q ss_pred             EEEEEE---eCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCC-hHHHHHHHHHHHH
Q 022552          217 SLLYIE---TADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALN-SSLSQVLVNCLRY  283 (295)
Q Consensus       217 t~IeV~---a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~-~~~~~~L~~~L~~  283 (295)
                      +.+.|.   ..+.||++++|..+|+++|++|...-  + ++ ..=.|.+.. ..... +..+++|.+.|.+
T Consensus         2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~-~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912           2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDP-TKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEc-hhhccchHHHHHHHHHHHh
Confidence            345553   35789999999999999999997763  3 22 222344533 22222 2355666666655

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=80.42  E-value=6  Score=34.21  Aligned_cols=62  Identities=15%  Similarity=0.199  Sum_probs=39.3

Q ss_pred             eEEEEEEe--CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHH
Q 022552          216 RSLLYIET--ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLV  278 (295)
Q Consensus       216 ~t~IeV~a--~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~  278 (295)
                      .-+|++..  ++.||+|+.++..++++||+|..+-.. ..+-.++.|..-=.-+++......+|+
T Consensus        93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~-dpe~~~e~~l~IVte~~iP~~li~el~  156 (167)
T COG2150          93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE-DPELQEEPKLTIVTERPIPGDLIDELK  156 (167)
T ss_pred             CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC-CcccCCCceEEEEEeccCCHHHHHHHh
Confidence            45666665  678999999999999999999987643 222333333221134555555444443

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=80.36  E-value=3.7  Score=27.21  Aligned_cols=32  Identities=19%  Similarity=0.400  Sum_probs=25.6

Q ss_pred             EEEEeCC---CcchHHHHHHHHHhCCceEEEEEEE
Q 022552          219 LYIETAD---RPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       219 IeV~a~D---RPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      |+|.+.+   .||+++++.++|.++|++|......
T Consensus         3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~   37 (60)
T cd04868           3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS   37 (60)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence            4445444   8999999999999999999877543

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=80.34  E-value=3.7  Score=38.07  Aligned_cols=43  Identities=12%  Similarity=0.115  Sum_probs=36.4

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEE
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQ  142 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~  142 (295)
                      ...++.+..-|.||.+.+|+++|+..|+||.+--+--+.+..+
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~L  118 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKAL  118 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhh
Confidence            3457899999999999999999999999999988766655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-05

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 5/45 (11%), Positives = 20/45 (44%)

Query: 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS 263
           + I   D+ G+  +I  +I+  + ++ +  ++ +  +      + 
Sbjct: 8   IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.8
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.76
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.95
2f06_A	144	Conserved hypothetical protein; structural genomic	98.47
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.19
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.17
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.08
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.06
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.02
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.8
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.6
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.48
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.4
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.3
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.27
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.26
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.22
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.19
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.17
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.14
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.12
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.06
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.05
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.03
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.94
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	96.89
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.82
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	96.67
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.44
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.39
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.26
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.15
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.94
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.89
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	95.4
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.05
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	94.97
2f06_A	144	Conserved hypothetical protein; structural genomic	94.73
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	94.43
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	93.98
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	93.51
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	93.49
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	93.12
3luy_A	329	Probable chorismate mutase; structural genomics, A	92.72
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	92.31
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	92.19
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	91.91
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	91.79
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	89.51
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	89.11
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	87.56
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	86.74
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	86.44
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	86.13
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	84.41
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	83.86
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	83.55
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	82.51
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	81.08

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.80  E-value=7.9e-19  Score=153.65  Aligned_cols=156  Identities=14%  Similarity=0.183  Sum_probs=113.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCC
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE  179 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~  179 (295)
                      ..++|+|+|+|||||++.|+++|+++|+||++|++++..+++.-.|.+...  +.  ....+++.|+..|...+.+... 
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~--~~--~~~~~~~~l~~~L~~~~~~~~~-   78 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN--AK--DGKLIQSALESALPGFQISTRR-   78 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SS--SSHHHHHHHHHHSTTCEEEEEE-
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec--Cc--cchhHHHHHHHHHHHHHHhcCC-
Confidence            357899999999999999999999999999999999999988557777653  21  2234567777776654322100 


Q ss_pred             chhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--Ceee
Q 022552          180 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAK  257 (295)
Q Consensus       180 ~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~  257 (295)
                       .           .. .+  .   .+    .......++|+|.|+|||||+++|+++|+++|+||..++..|.+  +++.
T Consensus        79 -~-----------~~-~~--~---~~----~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~  136 (195)
T 2nyi_A           79 -A-----------SS-VA--E---RH----VSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGF  136 (195)
T ss_dssp             -C-----------CC-C-------------CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTC
T ss_pred             -e-----------EE-EE--e---CC----cCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCC
Confidence             0           00 01  0   01    12223589999999999999999999999999999999999998  7889


Q ss_pred             eEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 022552          258 DKFHVSY-GGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       258 D~F~V~~-~G~~l~~~~~~~L~~~L~~~  284 (295)
                      +.|+++- .+.+ .+.. ++|++.|...
T Consensus       137 ~~F~m~~~~~~~-~~~~-~~l~~~l~~~  162 (195)
T 2nyi_A          137 TLFRMGSRVAFP-FPLY-QEVVTALSRV  162 (195)
T ss_dssp             EEEEEEEEEEEE-GGGH-HHHHHHHHHH
T ss_pred             CeEEEEEEEEcC-CCcc-HHHHHHHHHH
Confidence            9999975 3322 1224 6677766644

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.76  E-value=3.6e-17  Score=142.12  Aligned_cols=155  Identities=13%  Similarity=0.156  Sum_probs=110.1

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCc
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES  180 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~~  180 (295)
                      ..+|+|+|+||||++++|+++|+++|+||.++++++..+++.-.|.+..+        ...++.|+..|...+.....  
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~~~~~~~~--   75 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--------PSNITRVETTLPLLGQQHDL--   75 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--------HHHHHHHHHHHHHHHHHHTC--
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--------CCCHHHHHHHHHHHHHhcCC--
Confidence            57899999999999999999999999999999999998888667777542        24678888888775432111  


Q ss_pred             hhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC----ee
Q 022552          181 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL----VA  256 (295)
Q Consensus       181 ~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~----~a  256 (295)
                      ...+     +  +. .      .++    .......++|+|.|+||||+|++|+++|+++|+||.+++..|.++    +.
T Consensus        76 ~~~~-----~--~~-~------~~~----~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~  137 (192)
T 1u8s_A           76 ITMM-----K--RT-S------PHD----HQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSE  137 (192)
T ss_dssp             EEEE-----E--EE-C------CCC----CCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC-------
T ss_pred             EEEE-----E--eC-C------CCC----CccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCC
Confidence            0000     0  00 0      001    112235799999999999999999999999999999999999985    68


Q ss_pred             eeEEEEEe-CCCCCChHHHHHHHHHHHHH
Q 022552          257 KDKFHVSY-GGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       257 ~D~F~V~~-~G~~l~~~~~~~L~~~L~~~  284 (295)
                      .+.|+++- .+.+ .+...++|++.|...
T Consensus       138 ~~~F~~~~~~~~~-~~~~~~~l~~~l~~~  165 (192)
T 1u8s_A          138 QNQFHIAISARVD-SGCNLMQLQEEFDAL  165 (192)
T ss_dssp             -CEEEEEEEEEEC-TTSCHHHHHHHHHHH
T ss_pred             CCEEEEEEEEeCC-CCCCHHHHHHHHHHH
Confidence            99999974 2222 111445666666543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.95  E-value=8.4e-08  Score=91.72  Aligned_cols=138  Identities=9%  Similarity=0.054  Sum_probs=92.3

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCC
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPE  179 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~  179 (295)
                      ...+|+|.|+||||+.+.|+++|+++|+||.+.+.+..++.+.-...+.-+ .+     ....+.|+..|...-..  .+
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~-~~-----~~~~~~l~~~l~~~~~~--~~   82 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP-AD-----VADGPALRHDVEAAIRK--VG   82 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC-HH-----HHTSHHHHHHHHHHHHH--TT
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec-CC-----cCCHHHHHHHHHHHHHH--cC
Confidence            457899999999999999999999999999999999988876433333221 11     01236677777653221  11


Q ss_pred             chhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCC-CcchHHHHHHHHHhCCceEEEEEEEecCCeeee
Q 022552          180 SSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD-RPGLLVEIMKIIADVNVDVESAEIDTEGLVAKD  258 (295)
Q Consensus       180 ~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~D-RPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D  258 (295)
                      +...+        ....      ..+    ......++++++.+.| +||++.+|+.+|+++|+||...+.-+......-
T Consensus        83 ~~~~~--------~~~~------~~~----~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~  144 (415)
T 3p96_A           83 LDVSI--------ERSD------DVP----IIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGL  144 (415)
T ss_dssp             CEEEE--------EECS------SSC----SSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEE
T ss_pred             eEEEE--------EECC------ccc----ccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEE
Confidence            11000        0000      000    0122358999999999 999999999999999999999888774333333


Q ss_pred             EEEEE
Q 022552          259 KFHVS  263 (295)
Q Consensus       259 ~F~V~  263 (295)
                      .|++.
T Consensus       145 ~~~v~  149 (415)
T 3p96_A          145 ELRVS  149 (415)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            36663

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.47  E-value=7.3e-06  Score=67.17  Aligned_cols=111  Identities=12%  Similarity=0.173  Sum_probs=75.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcccCCCc
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPES  180 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~~~~~  180 (295)
                      ..++|..+|+||.++++++.|++.|+||..-.+....+ ++ -.|.+.         ++   ++.++.|++ . +  .  
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~-~~~~~~---------d~---~~a~~~L~~-~-G--~--   67 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGI-LRGIVS---------DP---DKAYKALKD-N-H--F--   67 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEE-EEEEES---------CH---HHHHHHHHH-T-T--C--
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCE-EEEEeC---------CH---HHHHHHHHH-c-C--C--
Confidence            57889999999999999999999999999887765544 32 123321         12   223333332 1 1  0  


Q ss_pred             hhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEE
Q 022552          181 SEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKF  260 (295)
Q Consensus       181 ~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F  260 (295)
                                           .    +      ....++-+..+|+||.+++|+++|++.||||.+......+.+..-+|
T Consensus        68 ---------------------~----v------~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A           68 ---------------------A----V------NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI  116 (144)
T ss_dssp             ---------------------C----E------EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             ---------------------e----E------eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence                                 0    0      01246777889999999999999999999998766653344444444


Q ss_pred             EE
Q 022552          261 HV  262 (295)
Q Consensus       261 ~V  262 (295)
                      .+
T Consensus       117 ~~  118 (144)
T 2f06_A          117 RP  118 (144)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.19  E-value=1.2e-05  Score=60.54  Aligned_cols=65  Identities=11%  Similarity=0.111  Sum_probs=50.6

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      ...|+|.++||||++++|+++|+++|+||.+....+..+.+.-.+.+.-+  +.     ..++.|...|.+.
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~--~~-----~~l~~l~~~L~~~   69 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EK-----QDFTYLRNEFEAF   69 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SC-----CCHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeC--CC-----CCHHHHHHHHHHH
Confidence            46899999999999999999999999999999999887655445555432  21     3457777777763

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.17  E-value=2.2e-06  Score=74.30  Aligned_cols=73  Identities=11%  Similarity=0.002  Sum_probs=53.6

Q ss_pred             CCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552           97 SNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus        97 ~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      .....++|+|.|+|||||++.|+++|+++|+||.+++.++.+  +...+.|++... -+.+  +... +.|+..|....
T Consensus        89 ~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~-~~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A           89 PDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSR-VAFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             TTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEE-EEEE--GGGH-HHHHHHHHHHH
T ss_pred             CCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEE-EEcC--CCcc-HHHHHHHHHHH
Confidence            344567999999999999999999999999999999999987  323345555442 1111  2234 77888877644

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.08  E-value=2.6e-05  Score=58.58  Aligned_cols=47  Identities=11%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      .+.|.|.++||||+|++|+.+|+++|+||.+....+.++...-.+.+
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v   51 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVV   51 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEE
Confidence            57899999999999999999999999999999998876443333334

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.06  E-value=2.2e-05  Score=58.31  Aligned_cols=63  Identities=13%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      .+.|.|.+.||||+|++|+++|++.|+||.++...+.++.+...|.+.-.+    ...++++.+.|.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~----~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN----TDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS----HHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence            578999999999999999999999999999999988765555555553221    234555555554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.02  E-value=2.3e-05  Score=67.29  Aligned_cols=65  Identities=15%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      .++|.|.|+|||||+++|+.+|+++|+||..+++.+.++.-.-.|.+...     ....++|++.|...+
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~~~   70 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-----PSNITRVETTLPLLG   70 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-----HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-----CCCHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999866554445556432     134566777766543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.80  E-value=0.00012  Score=54.19  Aligned_cols=64  Identities=9%  Similarity=0.119  Sum_probs=47.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+.|.|.++||||++++|+++|++.|+||.+..+.+.++.+...|.+.-.       +.+.++.+...|++
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~-------~~~~l~~l~~~L~~   68 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-------NTDKLTTLMDKLRK   68 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES-------SHHHHHHHHHHHTT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC-------CHHHHHHHHHHHhc
Confidence            35788999999999999999999999999999998876633344544331       23555555555543

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.60  E-value=0.0012  Score=55.38  Aligned_cols=111  Identities=11%  Similarity=0.135  Sum_probs=72.5

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022552           99 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  176 (295)
Q Consensus        99 ~~~t~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~  176 (295)
                      .+.+.|+|. .+|+||.++++.+.|+++|+||..-......++. .-.|.|...          ..++....|++ +.. 
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~----------~~~~a~~~l~~-~~~-   90 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRG----------DYKQTLEILSE-RQD-   90 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGG----------GHHHHHHHHHH-SST-
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEech----------HHHHHHHHHHH-HHH-
Confidence            355788888 5999999999999999999999876554333332 234655431          12333344444 211 


Q ss_pred             CCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCC---CcchHHHHHHHHHhCCceEEEEE
Q 022552          177 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       177 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~D---RPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                      +.  .                   +   ..|.+.   .+.+.+.|.+.+   +||+++++.++|++.||||....
T Consensus        91 ~l--~-------------------~---~~i~~~---~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is  138 (167)
T 2re1_A           91 SI--G-------------------A---ASIDGD---DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS  138 (167)
T ss_dssp             TT--T-------------------C---SEEEEE---SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred             Hc--C-------------------C---ceEEec---CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence            00  0                   0   012222   256888898886   99999999999999999999843

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.48  E-value=0.0062  Score=51.65  Aligned_cols=111  Identities=20%  Similarity=0.255  Sum_probs=72.0

Q ss_pred             CCeEEEEE-EeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--C-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552           99 SDATIVQL-SFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--S-VKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  174 (295)
Q Consensus        99 ~~~t~V~V-~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~  174 (295)
                      .+.+.|+| ..+|+||.+++|...|++.|+||..-...+..  + ...-.|.+..          +..++....|++ +.
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-~~   81 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-LQ   81 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-TT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-HH
Confidence            45677777 46999999999999999999999866554331  2 2221255543          222333444443 21


Q ss_pred             ccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022552          175 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       175 ~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                      . +.            +         +   ..|.+.   .+...|.|.|.   ++||+++++.++|++.||||....
T Consensus        82 ~-~~------------~---------~---~~v~~~---~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is  130 (178)
T 2dtj_A           82 V-QG------------N---------W---TNVLYD---DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS  130 (178)
T ss_dssp             T-TT------------T---------C---SEEEEE---SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             H-hc------------C---------C---CeEEEe---CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence            1 00            0         0   112222   24577777776   899999999999999999999853

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.40  E-value=0.00067  Score=62.86  Aligned_cols=66  Identities=14%  Similarity=0.036  Sum_probs=47.2

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ...+++|.|+||||+.+.|++.|+++|+||.+.+.++..  +.+.-...+..+ .+ .    ..++.|+..|..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~-~~-~----~~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD-TL-P----FDLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG-GS-S----SCHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC-CC-C----CCHHHHHHHHHH
Confidence            456899999999999999999999999999999999763  444322223221 11 1    124667777665

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.30  E-value=0.00098  Score=61.32  Aligned_cols=66  Identities=14%  Similarity=0.121  Sum_probs=46.7

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ...+++|.|+||||+.+.+++.|+++|+||.+.+.++..  +.+.-...+.-+ ++ ..    .++.|+..|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~-~~----~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAA-AK-VI----PLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES-SC-CC----CHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC-CC-CC----CHHHHHHHHHH
Confidence            346899999999999999999999999999999998543  344322223222 11 11    24667777765

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.27  E-value=0.0012  Score=60.77  Aligned_cols=64  Identities=9%  Similarity=-0.073  Sum_probs=46.3

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+|+|.|+||||+.+.+++.|+++|+||.+.+.++..  +.+.-...+..+  + .    ...+.|+..|..
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~--~-~----~~~~~L~~~f~~   73 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP--D-D----FDEAGFRAGLAE   73 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC--S-S----CCHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC--C-C----CCHHHHHHHHHH
Confidence            46899999999999999999999999999999999643  344322222221  1 1    224677777765

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.26  E-value=0.001  Score=61.24  Aligned_cols=39  Identities=18%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      ...+++|.|+||||+.+.|++.|+++|+||.+.+.++..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~   47 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDD   47 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEET
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecC
Confidence            356899999999999999999999999999999999643

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.22  E-value=0.00046  Score=63.67  Aligned_cols=47  Identities=11%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      ..++|+|.|+|||||+++|+++|+++|+||....-.+.  ...+.|+++
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   55 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDD--DLSARFFVR   55 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEE--TTTTEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEec--CCCCceEEE
Confidence            45899999999999999999999999999999887753  334557665

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.19  E-value=0.00057  Score=62.84  Aligned_cols=47  Identities=9%  Similarity=0.116  Sum_probs=39.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      ..++|+|.|+|||||++.|+++|+++|+||....-.+.  ...+.|+++
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   53 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDD--RQSGRFFIR   53 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTTTEEEEE
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeecc--CCCCeeEEE
Confidence            35899999999999999999999999999999887753  344567765

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.17  E-value=0.0011  Score=56.10  Aligned_cols=65  Identities=12%  Similarity=0.274  Sum_probs=50.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC--CeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG--LVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g--~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      .+.|.|.+.||||+|++|+.+|+++|+||.++.+.+..  +...=+|.+.  |.   +..+++|.+.|.+..
T Consensus         3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~d---~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--GD---EKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--SC---HHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--cc---HHHHHHHHHHHcCCC
Confidence            36789999999999999999999999999999997533  4455556663  32   457788888877643

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.14  E-value=0.0015  Score=59.97  Aligned_cols=39  Identities=13%  Similarity=0.221  Sum_probs=35.6

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      ...+++|.|+||||+.+.|++.|+++|+||.+.+.++..
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~   44 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDE   44 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecC
Confidence            457899999999999999999999999999999998543

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.12  E-value=0.017  Score=48.22  Aligned_cols=121  Identities=17%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             CCCeEEEEEEe-CCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHhh
Q 022552           98 NSDATIVQLSF-GDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNL  173 (295)
Q Consensus        98 ~~~~t~V~V~~-~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L  173 (295)
                      ..+.+.|+|.+ +|+||.++++.+.|++.|+||..-......  .+. .-.|.|...          ..++....|.+..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~----------d~~~a~~~L~~~~   82 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKD----------FAQEALEALEPVL   82 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGG----------GHHHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehH----------HHHHHHHHHHHHH
Confidence            34567777776 899999999999999999999874433221  122 234666431          1122233333311


Q ss_pred             cccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCC---CcchHHHHHHHHHhCCceEEEEEEE
Q 022552          174 LKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETAD---RPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       174 ~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~D---RPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      ..        +      +         +    .|.+.   .+...+.|.|.+   +||.++++.++|++.||||....  
T Consensus        83 ~~--------~------~---------~----~v~~~---~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--  130 (167)
T 2dt9_A           83 AE--------I------G---------G----EAILR---PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--  130 (167)
T ss_dssp             HH--------H------C---------C----EEEEE---CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--
T ss_pred             HH--------h------C---------C----cEEEe---CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--
Confidence            10        0      0         0    12222   256888888876   99999999999999999995543  


Q ss_pred             ecCCeeeeEEEE
Q 022552          251 TEGLVAKDKFHV  262 (295)
Q Consensus       251 T~g~~a~D~F~V  262 (295)
                      |- +. .=.|.|
T Consensus       131 ~S-e~-~is~vv  140 (167)
T 2dt9_A          131 TS-EV-RISVII  140 (167)
T ss_dssp             EC-SS-EEEEEE
T ss_pred             cc-CC-EEEEEE
Confidence            32 32 444666

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.06  E-value=0.00074  Score=62.57  Aligned_cols=49  Identities=20%  Similarity=0.279  Sum_probs=40.4

Q ss_pred             CCceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          213 GPKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       213 ~~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      +...++|+|.|+|||||++.|+.+|+++|+||....-.+.  ...+.|+++
T Consensus        19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d--~~~g~FfMr   67 (302)
T 3o1l_A           19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD--NLSGWFFMR   67 (302)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE--TTTTEEEEE
T ss_pred             ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec--CCCCeEEEE
Confidence            3456899999999999999999999999999999887654  233467765

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.05  E-value=0.00067  Score=62.37  Aligned_cols=47  Identities=19%  Similarity=0.323  Sum_probs=39.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      ..++|+|.|+|||||++.|+.+|+++|+||....-.+  +...+.|+++
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~--d~~~g~Ffmr   52 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFN--DEDSSKFFMR   52 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE--ETTTTEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeee--cCCCCeEEEE
Confidence            4689999999999999999999999999999887754  2344567765

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.03  E-value=0.0024  Score=54.15  Aligned_cols=65  Identities=12%  Similarity=0.287  Sum_probs=50.3

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe-c-CCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT-E-GLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T-~-g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      .+.|.|...|+||+|++|+.+|+++|+||.++.+.+ . .+...=+|.+.  |.   +..+++|.+.|.+..
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~--~d---~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--GP---DEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--EC---HHHHHHHHHHHHHST
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe--cc---HHHHHHHHHHhcCCC
Confidence            468899999999999999999999999999999964 4 24455556663  22   457778888877643

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.94  E-value=0.0033  Score=51.82  Aligned_cols=59  Identities=24%  Similarity=0.326  Sum_probs=42.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHH
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRY  283 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~  283 (295)
                      .|+|.|.||+|||.+|+++|+++++||..+.+.+.|.     +++.-.  .........|...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~g~-----i~~~~~--~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR-----IYLNFA--ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETTTE-----EEEEEC--CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecCCE-----EEEEEE--eCCHHHHHHHHHHHHc
Confidence            4789999999999999999999999999999987632     444322  1223345555555543

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=96.89  E-value=0.0055  Score=56.26  Aligned_cols=46  Identities=13%  Similarity=0.317  Sum_probs=38.2

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      .++|+|.|+|||||++.|+.+|+++|+||....-.+.  ...+.|+++
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d--~~~g~Ffmr   51 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYND--TESGHFFMR   51 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEE--TTTTEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeec--CCCCceEEE
Confidence            5789999999999999999999999999999887642  233456654

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.82  E-value=0.0049  Score=52.11  Aligned_cols=63  Identities=19%  Similarity=0.287  Sum_probs=49.9

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VK-QTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      ..+.|...|+||+|++++++|++.|+||.+..+....+ +. .-+|.+.    +    +...+++|...|.+.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~----~----d~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV----G----DEKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE----S----CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe----c----cHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999987764 44 3345553    2    246788888888763

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=96.67  E-value=0.0019  Score=61.37  Aligned_cols=40  Identities=15%  Similarity=0.292  Sum_probs=36.5

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL  254 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~  254 (295)
                      ...+|+|.|+|||||++.|+.+|+++|+||....-.+.++
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~   50 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRH   50 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETT
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECC
Confidence            4689999999999999999999999999999999877654

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.44  E-value=0.01  Score=50.22  Aligned_cols=63  Identities=14%  Similarity=0.226  Sum_probs=49.6

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHh
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VK-QTKFFITRLDTGRKVEDPDLLERIRLTIINN  172 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~  172 (295)
                      ..+.|...|+||.|++++++|++.|+||.+..+..+.+ +. .-+|.+..        ++..+++|...|.+.
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~--------d~~~leql~kQL~Kl   69 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG--------PDEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE--------CHHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec--------cHHHHHHHHHHhcCC
Confidence            57899999999999999999999999999999987664 44 33455542        146778888887763

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.39  E-value=0.12  Score=43.86  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             CeEEEEE-EeCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552          100 DATIVQL-SFGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus       100 ~~t~V~V-~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      +.+.|+| ..+|+||.+++|...|++.|+||.--......  .+. --.|.|...       +   +++....|.+ +..
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-------~---~~~a~~~L~~-~~~   83 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-------V---GPAAVEKLDS-LRN   83 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-------T---HHHHHHHHHH-THH
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-------H---HHHHHHHHHH-HHH
Confidence            4455555 47899999999999999999999754432222  333 234666431       1   1222333333 110


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                             .+.                  ...|.+.+   +...+.|.+.   ++||+++++.++|++.||||....
T Consensus        84 -------el~------------------~~~v~~~~---~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           84 -------EIG------------------FSQLLYDD---HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             -------HHC------------------CSEEEEES---CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             -------hcC------------------cceEEEeC---CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence                   000                  00122222   4566776655   899999999999999999998877

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.26  E-value=0.01  Score=51.38  Aligned_cols=64  Identities=11%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEE-ecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEID-TEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~-T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~  284 (295)
                      .+.|.|...|+||.|++|+.+|+++|+||.+..+. |.. +...=++.|...     +...++|++.|.+.
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-----e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-----DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-----TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-----HHHHHHHHHHhcCc
Confidence            57899999999999999999999999999999986 544 334444555322     33556677766553

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.15  E-value=0.023  Score=46.58  Aligned_cols=59  Identities=14%  Similarity=0.172  Sum_probs=44.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .|.|.|.||+|++.+|+.+|+..++||....+.+.  +.   +++.-+     ..+.+.+..|...|..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~--g~---i~~~~~-----~~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI--GR---IYLNFA-----ELEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT--TE---EEEEEC-----CCCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC--CE---EEEEEE-----eCCHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999666  33   223331     1134666777777766

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.94  E-value=0.013  Score=51.82  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=31.0

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG  253 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g  253 (295)
                      ...|.|.+.||||+|++|+++|+++++||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            46789999999999999999999999999999998853

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.89  E-value=0.043  Score=47.70  Aligned_cols=155  Identities=14%  Similarity=0.108  Sum_probs=84.7

Q ss_pred             CCCcEE-EEeecCCCCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEc--CCeEE-EEEEEeecCCCCCCCChH
Q 022552           86 IPMPHV-LIDQDSNSDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTE--GSVKQ-TKFFITRLDTGRKVEDPD  160 (295)
Q Consensus        86 ~~~p~V-~i~~~~~~~~t~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A~I~T~--~~~~~-D~F~V~~~~~g~~~~d~~  160 (295)
                      .++|.| -|..  +.+...|+|. .+|+||..++|.+.|++.|+||---.....  .++.. -.|.+...          
T Consensus        21 mE~~vVtGIa~--~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~----------   88 (200)
T 4go7_X           21 MEDPILTGVAH--DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD----------   88 (200)
T ss_dssp             CCSCEEEEEEE--ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG----------
T ss_pred             cccCcEEEEEc--cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh----------
Confidence            345655 3333  3345677765 699999999999999999999986433222  12333 34555431          


Q ss_pred             HHHHHHHHHHHhhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeCCCcchHHHHHHHHHhC
Q 022552          161 LLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETADRPGLLVEIMKIIADV  240 (295)
Q Consensus       161 ~le~L~~~L~~~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~DRPGLL~dIt~~L~~~  240 (295)
                      .+++....|.+...        .+.                  ...|.+++.-..-+++=.-...+||+.+++.++|++.
T Consensus        89 d~~~~~~~l~~~~~--------~~~------------------~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~  142 (200)
T 4go7_X           89 VGPAAVEKLDSLRN--------EIG------------------FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAV  142 (200)
T ss_dssp             GHHHHHHHHHTTHH--------HHC------------------CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHh--------hhc------------------eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHC
Confidence            12232333332111        110                  0012222221122333344668999999999999999


Q ss_pred             CceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 022552          241 NVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPE  289 (295)
Q Consensus       241 gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~  289 (295)
                      ||||....  | .+. .=.|.|.       ++..++-.++|.++-..+.
T Consensus       143 ~INI~mIs--t-SEi-~IS~vV~-------~~d~~~Av~aLH~~F~L~~  180 (200)
T 4go7_X          143 GVNIELIS--T-SEI-RISVLCR-------DTELDKAVVALHEAFGLGG  180 (200)
T ss_dssp             TCCCCEEE--E-CSS-EEEEEEE-------GGGHHHHHHHHHHHHTC--
T ss_pred             CCCEEEEE--c-cCC-EEEEEEe-------HHHHHHHHHHHHHHhCCCC
Confidence            99999875  3 222 2235552       2233444556666644443

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=95.40  E-value=0.038  Score=47.83  Aligned_cols=63  Identities=13%  Similarity=0.207  Sum_probs=47.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ...+.|...|+||.|++|+++|+..|+||.+-.+..+.+ +.. -++.|..    .    +..+++|...|.+
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g----~----e~~ieqL~kQL~K   93 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----D----DKTIEQIEKQAYK   93 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----C----TTHHHHHHHHHTT
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC----C----HHHHHHHHHHhcC
Confidence            468999999999999999999999999999988875544 443 3455543    1    2456777777665

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.05  E-value=0.16  Score=48.55  Aligned_cols=110  Identities=20%  Similarity=0.232  Sum_probs=70.4

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcC--CeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHHhhc
Q 022552           99 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG--SVK-QTKFFITRLDTGRKVEDPDLLERIRLTIINNLL  174 (295)
Q Consensus        99 ~~~t~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~--~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~  174 (295)
                      .+.+.|+|. .+|++|.+++|.+.|+++|+||..-...+..  .+. .-.|.|...       +.++   ....|++ +.
T Consensus       262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~-------~~~~---a~~~l~~-~~  330 (421)
T 3ab4_A          262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRS-------DGRR---AMEILKK-LQ  330 (421)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETT-------THHH---HHHHHHH-HH
T ss_pred             CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEech-------hHHH---HHHHHHH-HH
Confidence            345677787 6999999999999999999999866543332  232 234656431       1222   2233333 21


Q ss_pred             ccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEE
Q 022552          175 KYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESA  247 (295)
Q Consensus       175 ~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A  247 (295)
                      . +..                     +   ..|.+.   .+...+.|.+.   ++||.++++.++|++.||||...
T Consensus       331 ~-~~~---------------------~---~~v~~~---~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          331 V-QGN---------------------W---TNVLYD---DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             T-TTT---------------------C---SEEEEE---CCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEE
T ss_pred             H-HcC---------------------C---ceEEEe---CCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEE
Confidence            1 000                     0   012222   24577777775   89999999999999999999954

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=94.97  E-value=0.044  Score=48.31  Aligned_cols=38  Identities=11%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      ...+.|.+.||+|+|++|+++|++++.||...+..+..
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~   41 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK   41 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence            35789999999999999999999999999999999976

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=94.73  E-value=0.091  Score=42.31  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=32.5

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEe
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDT  251 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T  251 (295)
                      ...|.|..+|+||.|++|+..|++.|+||....+..
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~   41 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE   41 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence            367888899999999999999999999999988764

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=94.43  E-value=0.074  Score=50.89  Aligned_cols=48  Identities=21%  Similarity=0.320  Sum_probs=42.3

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      +...|-+.-.|+||.+..|+.+|.++||||......+.|+.+.-++.+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            445677888999999999999999999999999999988887777766

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=93.98  E-value=0.33  Score=47.84  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=47.9

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  279 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~~L~~  279 (295)
                      ..+.|.+.-.|+||.+..|+.+|.++||||..+++...  |+.+.=++.+   ..+++++.+++|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v---d~~~~~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL---DQDVPDDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE---SSCCCHHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE---CCCCCHHHHHHHhc
Confidence            46888899999999999999999999999999999764  4445444444   34555666666654

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=93.51  E-value=0.23  Score=45.35  Aligned_cols=54  Identities=13%  Similarity=0.166  Sum_probs=44.4

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCC
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAA  268 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~  268 (295)
                      +.|.|-+..+|+||-|+++-..|+.+|||+.+.+..-...+ -+=.|||.-+|..
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~  253 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHR  253 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCC
Confidence            36777788889999999999999999999999999765544 5667888547765

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=93.49  E-value=0.26  Score=45.63  Aligned_cols=67  Identities=22%  Similarity=0.321  Sum_probs=48.7

Q ss_pred             ceEEEEEEeC-CCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          215 KRSLLYIETA-DRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       215 ~~t~IeV~a~-DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      +.|.|-+..+ |+||-|+++-..|+.+|||+.+.+..-.... -+=.|||.-+|.. .++..++.-+.|.
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~-~d~~v~~aL~~L~  268 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHA-TDSRVADALAGLH  268 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESCT-TSHHHHHHHHHHH
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCCC-CcHHHHHHHHHHH
Confidence            4788888886 9999999999999999999999998765444 4556888547765 3443333333343

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=93.12  E-value=0.35  Score=43.73  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=48.1

Q ss_pred             ceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          215 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       215 ~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      +.|.|-+..   .|+||-|+++-..|+.+|||+.+.+..-.... -+=.|||.-+ . +.++..++.-+.|.
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e-~-~~d~~v~~aL~~L~  254 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD-S-AITTDIKKVIAILE  254 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES-C-CSCHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe-c-CCcHHHHHHHHHHH
Confidence            467777777   89999999999999999999999999765544 5567888536 3 34554333334443

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=92.72  E-value=0.77  Score=42.73  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=41.4

Q ss_pred             ceEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCC
Q 022552          215 KRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAAL  269 (295)
Q Consensus       215 ~~t~IeV~a~--DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l  269 (295)
                      +.+.+-+..+  |+||-||++-..|+.+|||+.+.+..-.... -+=.|||.-+|..-
T Consensus       205 ~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~~  262 (329)
T 3luy_A          205 EYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAPW  262 (329)
T ss_dssp             CEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCTT
T ss_pred             CceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCcC
Confidence            3344444454  7999999999999999999999999766555 45568875477653

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=92.19  E-value=0.51  Score=45.04  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             CeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEE
Q 022552          100 DATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFI  147 (295)
Q Consensus       100 ~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V  147 (295)
                      +...+.+.-.|+||.+..|..+|.++|+||..-.+.+.++..+-++.+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv  377 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI  377 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence            355788999999999999999999999999999999966655444444

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=91.91  E-value=1  Score=45.20  Aligned_cols=141  Identities=15%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             CCeEEEEEE-eCCCccHHHHHHHHHHHCCceEEEEEEEEcC---Ce--EE-EEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552           99 SDATIVQLS-FGDRLGALIDTMNALKDLGLDVAKGTVNTEG---SV--KQ-TKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus        99 ~~~t~V~V~-~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~---~~--~~-D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+...|+|. .+|+||..++|.+.|++.|+||.--......   ++  .. -.|.+..          +.+++....|++
T Consensus       442 ~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~----------~d~~~a~~~l~~  511 (600)
T 3l76_A          442 QDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE----------GDSSQAEAILQP  511 (600)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH----------HHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH----------HHHHHHHHHHHH
Confidence            345666664 6999999999999999999999544333322   13  22 2355543          334444444444


Q ss_pred             hhcccCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022552          172 NLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       172 ~L~~~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                       +.. +.+                        ..+|.+++   +...|.|.+   ..+||..+++.++|++.||||....
T Consensus       512 -~~~-~~~------------------------~~~v~~~~---~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          512 -LIK-DWL------------------------DAAIVVNK---AIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             -HTT-TST------------------------TCEEEEEC---CEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             -HHH-hcC------------------------CceEEEeC---CeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence             211 000                        01122222   457777775   5999999999999999999998766


Q ss_pred             EEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHHcCCCC
Q 022552          249 IDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYYLRRPE  289 (295)
Q Consensus       249 I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L~~~~  289 (295)
                        |-.  ..=.+.|.       ++..++..++|+++.....
T Consensus       563 --tSE--i~Is~vV~-------~~~~~~Av~alh~~F~l~~  592 (600)
T 3l76_A          563 --TSE--IKISCVVP-------QDRGVDALKAAHSAFNLAG  592 (600)
T ss_dssp             --ECS--SEEEEEEE-------GGGHHHHHHHHHHHTTTTS
T ss_pred             --cCC--ceEEEEEe-------HHHHHHHHHHHHHHhCCCC
Confidence              322  22234452       2234455567777765433

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=91.79  E-value=8.1  Score=38.58  Aligned_cols=123  Identities=15%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             CCeEEEEEEeC---CCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhcc
Q 022552           99 SDATIVQLSFG---DRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLK  175 (295)
Q Consensus        99 ~~~t~V~V~~~---DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~  175 (295)
                      .+...|.|.+.   .+||..+++..+|++.|+||..-.  +. +.-+ .|.|..          +..++..+.|.+.+..
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS-e~~I-s~vI~~----------~d~~~Av~aLh~~f~~  418 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS-EVKV-SCVIDQ----------RDADRAIAALSNAFGV  418 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC-SSEE-EEEEEG----------GGHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC-CCEE-EEEEcH----------HHHHHHHHHHHHhhcc
Confidence            45678888876   799999999999999999997654  22 3222 255543          2223444455554432


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEE
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEID  250 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~-a~DRPGLL~dIt~~L~~~gI~I~~A~I~  250 (295)
                      +...          .. ..... ..-+.-+-|..+.   +.+.|.|. .+|+||+.++|-..|++.||+|...--+
T Consensus       419 ~~t~----------~~-~~~~~-~~~~~v~Gia~~~---~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~  479 (600)
T 3l76_A          419 TLSP----------PK-NQTDT-SHLPAVRGVALDQ---DQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQS  479 (600)
T ss_dssp             CBCC----------CC-CCCC----CCSCCEEEEEC---SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             cCCC----------cc-ccccc-cccCceEEEEeeC---CEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence            1000          00 00000 0001112233222   44566654 5899999999999999999999665444

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=89.51  E-value=1.7  Score=42.03  Aligned_cols=107  Identities=13%  Similarity=0.191  Sum_probs=67.7

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHHhhccc
Q 022552          100 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKY  176 (295)
Q Consensus       100 ~~t~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~~L~~~  176 (295)
                      +.+.|+|.+   ++.+|.+++|..+|+++|+||..-.  +.....  .|.|... +-.     ...+.+...|...+.  
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~--~~~~~i--s~~V~~~-d~~-----~~~~~~~~el~~~~~--  364 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMP--SGVDSV--SLVIEDC-KLD-----GKCDKIIEEIKKQCN--  364 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBC--EETTEE--EEEEEHH-HHT-----TTHHHHHHHHHHHSC--
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEe--cCCCEE--EEEEecc-hHH-----HHHHHHHHHHHHhcC--
Confidence            345677875   6899999999999999999997532  222222  3666542 100     112233333332111  


Q ss_pred             CCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC---CCcchHHHHHHHHHhCCceEEEEE
Q 022552          177 HPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA---DRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       177 ~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~---DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                       +                          ..|.+.+   +...|.|.+.   .+||+..++.++|++.||||....
T Consensus       365 -~--------------------------~~v~v~~---~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          365 -P--------------------------DSIEIHP---NMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             -C--------------------------SEEEEEE---EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             -C--------------------------CcEEEeC---CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence             0                          0122221   4578888765   589999999999999999998765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=89.11  E-value=1.4  Score=42.31  Aligned_cols=76  Identities=17%  Similarity=0.203  Sum_probs=53.1

Q ss_pred             hhccchhhhccccccCCCCCCCCCcCcCCCCCcEEEEeecCCCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEE
Q 022552           57 RKKNILFASVNGTNAVSPTPLKSDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNT  136 (295)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T  136 (295)
                      ++-......+.+...++.  .....+++.+..|       ...+...|.+.-.|.||.+.+|..+|+++|+||..-...|
T Consensus       308 ~~~~~~~~nl~~~l~~g~--~~~~Vn~p~~~~~-------~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~  378 (416)
T 3k5p_A          308 RIGTEVTRKLVEYSDVGS--TVGAVNFPQVQLP-------PRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQT  378 (416)
T ss_dssp             HHHHHHHHHHHHHHHHCC--CTTBSSSCCCCCC-------CCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhhCC--CCceeeCCCcCCC-------CCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccC
Confidence            333444555555554444  2333455444333       1335689999999999999999999999999999888777


Q ss_pred             cCCeE
Q 022552          137 EGSVK  141 (295)
Q Consensus       137 ~~~~~  141 (295)
                      .++..
T Consensus       379 ~~~~~  383 (416)
T 3k5p_A          379 DGEVG  383 (416)
T ss_dssp             CSSCE
T ss_pred             CCceE
Confidence            77765

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=87.56  E-value=2.3  Score=41.76  Aligned_cols=49  Identities=14%  Similarity=0.214  Sum_probs=39.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC--eEEEEEEE
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS--VKQTKFFI  147 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~--~~~D~F~V  147 (295)
                      ..+..+.+.-+|+||.+..++..|.++|+||...++.....  ..+-.+.+
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v  502 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL  502 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE
Confidence            44668889999999999999999999999999999988643  23433444

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=86.74  E-value=1  Score=43.39  Aligned_cols=69  Identities=10%  Similarity=0.182  Sum_probs=50.8

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecC-CeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552          214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEG-LVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g-~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~  284 (295)
                      .+.|.|-+..+|+||-|+++-..|+.+|||+.+.+..-.. ..-+=.|||.-+  ...++..+++.+.|+..
T Consensus        32 ~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e--h~~d~~v~~AL~eL~~~  101 (429)
T 1phz_A           32 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD--KRTKPVLGSIIKSLRND  101 (429)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC--GGGHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe--eCCCHHHHHHHHHHHhh
Confidence            4568888888999999999999999999999999987554 445667888435  33444455555555544

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=86.44  E-value=1.8  Score=41.42  Aligned_cols=48  Identities=19%  Similarity=0.361  Sum_probs=44.0

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      ..+.|.+.-.|+||.|.+|+.+|+++|+||......|.|+.+.-+..+
T Consensus       342 ~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~  389 (416)
T 3k5p_A          342 TGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA  389 (416)
T ss_dssp             SSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence            468999999999999999999999999999999999999988776666

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=86.13  E-value=0.72  Score=44.65  Aligned_cols=35  Identities=29%  Similarity=0.566  Sum_probs=30.9

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEI  249 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I  249 (295)
                      ..|-+.+...|+||.|.+|+.+|.++||+|.+..=
T Consensus       358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q  392 (444)
T 3mtj_A          358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQ  392 (444)
T ss_dssp             EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence            47888999999999999999999999999998754

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=84.41  E-value=3.9  Score=37.08  Aligned_cols=64  Identities=17%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE-EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK-QTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~-~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .|.|.+..+|+||-|+++.+.|+.+|+|+..-.-.-.+++. .-.|+|.-  +|.. .+    +.++..|.+
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~--eg~~-~d----~~v~~aL~~  264 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF--IGHR-ED----QNVHNALEN  264 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE--ESCT-TS----HHHHHHHHH
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE--ecCC-Cc----HHHHHHHHH
Confidence            45666667899999999999999999999887777666542 44588876  5653 33    344455544

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=83.86  E-value=0.8  Score=37.87  Aligned_cols=48  Identities=21%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             ceEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeeeEEEE
Q 022552          215 KRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKDKFHV  262 (295)
Q Consensus       215 ~~t~IeV~-a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D~F~V  262 (295)
                      +.+.|.|. ..|+||.+++|.++|+++||+|.....+.. ++...=.|.|
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v   73 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV   73 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence            45788888 489999999999999999999988765432 2222334666

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=83.55  E-value=0.95  Score=37.35  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=36.6

Q ss_pred             ceEEEEEEe-CCCcchHHHHHHHHHhCCceEEEEEEEec---CCeeeeEEEEEe
Q 022552          215 KRSLLYIET-ADRPGLLVEIMKIIADVNVDVESAEIDTE---GLVAKDKFHVSY  264 (295)
Q Consensus       215 ~~t~IeV~a-~DRPGLL~dIt~~L~~~gI~I~~A~I~T~---g~~a~D~F~V~~  264 (295)
                      +.+.|.|.+ +|+||.+++|.++|++.||+|.....+..   .+...=.|.|..
T Consensus        15 ~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~   68 (167)
T 2dt9_A           15 DHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK   68 (167)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred             CEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence            457777776 79999999999999999999988654321   123344577743

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=82.51  E-value=2.7  Score=35.03  Aligned_cols=38  Identities=13%  Similarity=0.388  Sum_probs=32.3

Q ss_pred             ceEEEEEE-eCCCcchHHHHHHHHHhCCceEEEEEEEec
Q 022552          215 KRSLLYIE-TADRPGLLVEIMKIIADVNVDVESAEIDTE  252 (295)
Q Consensus       215 ~~t~IeV~-a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~  252 (295)
                      +.+.|+|. ..|+||.+++|.+.|++.||+|.....++.
T Consensus        14 ~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~   52 (178)
T 2dtj_A           14 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVS   52 (178)
T ss_dssp             SEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred             CEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            45777774 689999999999999999999998876654

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=81.08  E-value=4.5  Score=39.66  Aligned_cols=120  Identities=14%  Similarity=0.214  Sum_probs=72.3

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCC-ChHHHHHHHHHHHHhhcc
Q 022552          100 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVE-DPDLLERIRLTIINNLLK  175 (295)
Q Consensus       100 ~~t~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~-d~~~le~L~~~L~~~L~~  175 (295)
                      +.+.|+|.+   .+++|.+++|..+|+++|+||..-.  +....+  .|.|... +..... ..   +.++. +.+.+..
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~--sse~si--s~~v~~~-~~~~~~~~~---~~l~~-~~~el~~  410 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TSEVSI--SLTLDPS-KLWSRELIQ---QELDH-VVEELEK  410 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EETTEE--EEEECCG-GGSSSCCCH---HHHHH-HHHHHTT
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEE--eCCCeE--EEEEech-HhhhhhHHH---HHHHH-HHHHhCC
Confidence            567788885   7899999999999999999998762  222222  3666542 111100 01   11111 1111210


Q ss_pred             cCCCchhHhhhccccCccCCcccccccccceEEecCCCCceEEEEEEeC--CCcchHHHHHHHHHhCCceEEEEEEEecC
Q 022552          176 YHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGPKRSLLYIETA--DRPGLLVEIMKIIADVNVDVESAEIDTEG  253 (295)
Q Consensus       176 ~~~~~~~~La~~~~~~~~~~~r~~~~~~~~~V~i~~~~~~~t~IeV~a~--DRPGLL~dIt~~L~~~gI~I~~A~I~T~g  253 (295)
                        .                          ..|.+.+   +...|.|.+.  .+||+..++.++|++.||||....   .|
T Consensus       411 --~--------------------------~~v~~~~---~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIs---qG  456 (510)
T 2cdq_A          411 --I--------------------------AVVNLLK---GRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMIS---QG  456 (510)
T ss_dssp             --T--------------------------SEEEEEE---EEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEE---EC
T ss_pred             --C--------------------------CeEEEeC---CcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEE---ec
Confidence              0                          0122221   4567777776  889999999999999999998763   34


Q ss_pred             Ce-eeeEEEE
Q 022552          254 LV-AKDKFHV  262 (295)
Q Consensus       254 ~~-a~D~F~V  262 (295)
                      .. ..=.|.|
T Consensus       457 sSei~Is~vV  466 (510)
T 2cdq_A          457 ASKVNISFIV  466 (510)
T ss_dssp             TTCSEEEEEE
T ss_pred             CCcceEEEEE
Confidence            33 2334666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	0.001

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDT 251
           L I   ++ G+L ++  IIA+   ++  A+   
Sbjct: 4   LRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.76
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.53
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.45
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.31
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.18
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.05
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.82
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.64
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.62
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.48
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.48
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.37
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.27
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.23
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.21
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.08
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.07
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.99
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.96
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.96
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.9
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.84
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.76
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	96.37
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	93.19
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	92.51
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	88.14
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.54
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.51
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.71
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	81.98
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	81.69

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.76  E-value=3.9e-08  Score=72.95  Aligned_cols=65  Identities=14%  Similarity=0.210  Sum_probs=54.7

Q ss_pred             CCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552           99 SDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus        99 ~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+++|+|.|+||||++++++++|+++|+||.+++..+.++.+.-.+.|.-    .    +..+++|+..|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~----~----~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG----S----PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE----C----HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc----C----cccHHHHHHHHHH
Confidence            457899999999999999999999999999999999999998865565543    1    3567788887776

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.53  E-value=3.8e-07  Score=66.83  Aligned_cols=63  Identities=11%  Similarity=0.104  Sum_probs=50.2

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .+|+|.|+||||+++.++++|+++|+||.+.+.++.++.+.-.+.+..+ .+  .    ..++|+..|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~-~~--~----~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD-EK--Q----DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES-SC--C----CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe-cC--C----CHHHHHHHHHH
Confidence            5799999999999999999999999999999999998877555556543 22  1    13567777765

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.45  E-value=7.7e-07  Score=65.70  Aligned_cols=49  Identities=16%  Similarity=0.302  Sum_probs=45.1

Q ss_pred             ceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          215 KRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       215 ~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      .+++|.+.|+||||++++|+++|+++|+||...+..+.++.-.-.+.|+
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~   52 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS   52 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence            5789999999999999999999999999999999999999877777775

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.31  E-value=3e-06  Score=61.85  Aligned_cols=40  Identities=10%  Similarity=0.264  Sum_probs=36.6

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCee
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVA  256 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a  256 (295)
                      ++|+|.|+||||++++|+.+|+++|+||...+-.+.++.-
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f   42 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYF   42 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEE
Confidence            6899999999999999999999999999999988877543

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.18  E-value=5.9e-06  Score=61.62  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=38.8

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCC----eeeeEEEEE
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGL----VAKDKFHVS  263 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~----~a~D~F~V~  263 (295)
                      ...|+|.|+|||||+++|+++|+++|+||..++-.|+..    ...+.|.++
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~   57 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIA   57 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEE
Confidence            456778899999999999999999999999999988653    345678765

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.05  E-value=6.1e-06  Score=61.56  Aligned_cols=37  Identities=16%  Similarity=0.107  Sum_probs=33.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcC
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEG  138 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~  138 (295)
                      ..|+|.|+|||||+++|+++|+++|+||.+.+..+..
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            4688999999999999999999999999999887754

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=6.5e-05  Score=54.12  Aligned_cols=61  Identities=20%  Similarity=0.330  Sum_probs=46.6

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec--CCeeeeEEEEEeCCCCCChHHHHHHHH
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE--GLVAKDKFHVSYGGAALNSSLSQVLVN  279 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~--g~~a~D~F~V~~~G~~l~~~~~~~L~~  279 (295)
                      .+.|.+.-.|+||.|.+|+.+|+++|+||..+++.+.  |+.+.-++.+  ++ ++.++.+++|++
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v--D~-~~~~~vl~~I~~   65 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQ-DVPDDVRTAIAA   65 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SS-CCCHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc--CC-CccHHHHHHHHc
Confidence            4788899999999999999999999999999999775  4545444444  33 455666666654

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.64  E-value=0.00014  Score=51.36  Aligned_cols=47  Identities=17%  Similarity=0.128  Sum_probs=41.7

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEee
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  149 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~  149 (295)
                      +|.|..+|+||-|++++++|.+.|+||....++..++...-.|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            57889999999999999999999999999999999887766677644

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.62  E-value=6.5e-05  Score=53.23  Aligned_cols=45  Identities=18%  Similarity=0.185  Sum_probs=41.5

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      +|.|..+|+||-|++++++|.+.||||+++-+...++.+.-+|.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~v   45 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP   45 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEE
Confidence            578899999999999999999999999999998888888877877

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.48  E-value=5.1e-05  Score=54.60  Aligned_cols=50  Identities=18%  Similarity=0.121  Sum_probs=34.9

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEec-CCeeee--EEEEEeCC
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTE-GLVAKD--KFHVSYGG  266 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~-g~~a~D--~F~V~~~G  266 (295)
                      .-|.|.+.||||+|.+|+.+|+++|+||.+....+. .+.+..  .|++...+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~   54 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   54 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCc
Confidence            357899999999999999999999999999988763 344444  44554433

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.48  E-value=0.00035  Score=49.27  Aligned_cols=46  Identities=7%  Similarity=0.179  Sum_probs=40.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEe
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFIT  148 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~  148 (295)
                      ++.|...||||.|++++++|++.|+||.+-.+..+.+..+-.+.+.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            6899999999999999999999999999999988887665455443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.37  E-value=0.00016  Score=51.93  Aligned_cols=62  Identities=11%  Similarity=0.138  Sum_probs=42.1

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE---EEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK---QTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~---~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      .-|.|.+.||||+|++|+.+++++|.||......+..++.   .-.+.+...  +      ..+++|-..|+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~--~------~~l~~ll~kL~~   66 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE--G------GDFEKILERVKT   66 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC--S------SCHHHHHHHHHT
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcC--c------ccHHHHHHHHHc
Confidence            3588999999999999999999999999999998876653   234555442  1      124666666554

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.27  E-value=0.00041  Score=48.92  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=38.9

Q ss_pred             EEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          218 LLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       218 ~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      .|.|...||||.|++|+.+|++.|+||.+..+....+.+.-.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEE
Confidence            578899999999999999999999999999998767666555544

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.0012  Score=47.66  Aligned_cols=47  Identities=21%  Similarity=0.335  Sum_probs=40.1

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      .+.|.+.-.|+||.|.+|+.+|+++|+||.+....+.++.+..+-.+
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i   57 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI   57 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEE
Confidence            46777888999999999999999999999999999888766554444

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.0012  Score=47.10  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=35.4

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS  139 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~  139 (295)
                      +..+.+.-.|+||.+++|+.+|.+.|+||...++.+...
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~   41 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAE   41 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCC
Confidence            467888999999999999999999999999999987754

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.00087  Score=48.17  Aligned_cols=40  Identities=13%  Similarity=0.332  Sum_probs=35.4

Q ss_pred             eEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe
Q 022552          216 RSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV  255 (295)
Q Consensus       216 ~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~  255 (295)
                      .++|.+...|+||+|.+|+..|+.+|+||.+..+......
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~   42 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETP   42 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSST
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCC
Confidence            4688999999999999999999999999999999754443

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00097  Score=47.91  Aligned_cols=64  Identities=16%  Similarity=0.272  Sum_probs=46.8

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+.++..|+||.|+++++.|+..|+||.+-.+..+.+.-.-.+.+.-  +|.    ++.++++.+.|..
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv--~g~----~~~i~qi~kQl~K   67 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMV--KGD----DKTIEQIEKQAYK   67 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEE--EEC----TTHHHHHHHHHTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEE--EcC----HHHHHHHHHHHhC
Confidence            478999999999999999999999999999999877663332233332  232    2456666666654

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00095  Score=47.73  Aligned_cols=64  Identities=20%  Similarity=0.337  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+.++..|+||.|++++++|+..|+||.+-.+..+.+.-+-.+.+.-  .|    +++.++++...|..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv--~~----~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQT--VG----DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEE--ES----CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEE--EC----CHHHHHHHHHHHhC
Confidence            367899999999999999999999999999999866553332344443  23    24667777777766

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.96  E-value=0.00055  Score=51.23  Aligned_cols=70  Identities=11%  Similarity=0.228  Sum_probs=53.5

Q ss_pred             CceEEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHHHHc
Q 022552          214 PKRSLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLRYYL  285 (295)
Q Consensus       214 ~~~t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~~~L  285 (295)
                      .+.|.|-+...|+||-|+++-..|+++|||+.+.+....... -.=.|||.-+|..  ++.++.+.+.|..-+
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~--~~~i~~~l~~L~~~~   84 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRT--KPVLGSIIKSLRNDI   84 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGG--HHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCC--hHHHHHHHHHHHHhh
Confidence            467888899999999999999999999999999988765444 4446888547763  555566666665433

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0017  Score=46.41  Aligned_cols=65  Identities=11%  Similarity=0.204  Sum_probs=45.3

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~  284 (295)
                      ..|.+...|+||+|.+|+-.|+.+|+||.+..+.-......-.|-+.-.|.   +...+++...|.+.
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~---~~~i~qi~kQL~Kl   66 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD---EKVLEQIEKQLHKL   66 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECC---HHHHHHHHHHHhCC
Confidence            568888999999999999999999999999999743333333344432342   33455565555543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.90  E-value=0.0014  Score=47.00  Aligned_cols=65  Identities=9%  Similarity=0.204  Sum_probs=44.0

Q ss_pred             EEEEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEEeCCCCCChHHHHHHHHHHHHH
Q 022552          217 SLLYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVSYGGAALNSSLSQVLVNCLRYY  284 (295)
Q Consensus       217 t~IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~~~G~~l~~~~~~~L~~~L~~~  284 (295)
                      ..|.+...|+||.|.+|+..|+.+|+||.+..+.-......-.+-+.-.|.   ++..+++...|.+.
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~---~~~i~qi~kQL~Kl   67 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP---DEIVEQITKQLNKL   67 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC---HHHHHHHHHHHHHS
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECC---HHHHHHHHHHHhCC
Confidence            568889999999999999999999999999999743322222232222332   23445555555543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.84  E-value=0.001  Score=47.73  Aligned_cols=63  Identities=16%  Similarity=0.295  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCC-eEEEEEEEeecCCCCCCCChHHHHHHHHHHHH
Q 022552          102 TIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGS-VKQTKFFITRLDTGRKVEDPDLLERIRLTIIN  171 (295)
Q Consensus       102 t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~-~~~D~F~V~~~~~g~~~~d~~~le~L~~~L~~  171 (295)
                      ..+.+...|+||.|+++++.|+..|+||.+-.+..+.+ +.. .+.+.-  .|    +++.++++...|.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iS-Rmtivv--~~----~~~~i~qi~kQL~K   66 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLS-RMTLVT--NG----PDEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEE-EEEEEE--EE----CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeE-EEEEEE--EC----CHHHHHHHHHHHhC
Confidence            36789999999999999999999999999999986654 442 233332  23    24667777777766

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0084  Score=43.00  Aligned_cols=41  Identities=15%  Similarity=0.221  Sum_probs=36.7

Q ss_pred             eEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCeE
Q 022552          101 ATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVK  141 (295)
Q Consensus       101 ~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~  141 (295)
                      ...+.+.-.|+||.+++|+++|++.|+||.+-...+.+++.
T Consensus        11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~   51 (84)
T d1sc6a3          11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMG   51 (84)
T ss_dssp             SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEE
T ss_pred             CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCc
Confidence            35788889999999999999999999999999988887754

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.37  E-value=0.011  Score=42.21  Aligned_cols=62  Identities=21%  Similarity=0.278  Sum_probs=44.5

Q ss_pred             EEEEeCCCcchHHHHHHHHHhCCceEEEEEEEecCCe-eeeEEEEEeCCCCCChHHHHHHHHHHH
Q 022552          219 LYIETADRPGLLVEIMKIIADVNVDVESAEIDTEGLV-AKDKFHVSYGGAALNSSLSQVLVNCLR  282 (295)
Q Consensus       219 IeV~a~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~-a~D~F~V~~~G~~l~~~~~~~L~~~L~  282 (295)
                      +-+...|+||-|+++-..|+++|||+.+.+..-..+. -+=.|||.-+|.. .+ ..+++.+.|.
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~-~~-~~~~~l~~L~   67 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAI-TT-DIKKVIAILE   67 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCS-CH-HHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCC-cH-HHHHHHHHHH
Confidence            3344569999999999999999999999998765544 4556888657754 33 3344444443

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.19  E-value=0.3  Score=34.25  Aligned_cols=50  Identities=12%  Similarity=0.215  Sum_probs=37.5

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCC
Q 022552          103 IVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  154 (295)
Q Consensus       103 ~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~  154 (295)
                      .+.+...|+||-|+++-+.|+++|+|+..-.-.-.++. ..-.|+|.-  +|.
T Consensus         4 ~~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~--~g~   54 (80)
T d2qmwa2           4 FLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA--DSA   54 (80)
T ss_dssp             EEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE--SCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE--ecC
Confidence            34445679999999999999999999987766655543 233488877  565

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.51  E-value=0.14  Score=37.54  Aligned_cols=55  Identities=15%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             CCCeEEEEEEeCCCccHHHHHHHHHHHCCceEEEEEEEEcCCe-EEEEEEEeecCCCC
Q 022552           98 NSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSV-KQTKFFITRLDTGR  154 (295)
Q Consensus        98 ~~~~t~V~V~~~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~-~~D~F~V~~~~~g~  154 (295)
                      ..+.|-|.+..+|+||.|+++...|+++|+|+..-.-...+.. +.-.|+|.-  +|.
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~--eg~   68 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL--DKR   68 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB--CGG
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc--ccC
Confidence            3456777888899999999999999999999876655544432 233488865  564

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.14  E-value=0.39  Score=34.42  Aligned_cols=34  Identities=18%  Similarity=0.450  Sum_probs=30.6

Q ss_pred             ceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEE
Q 022552          215 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAE  248 (295)
Q Consensus       215 ~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~  248 (295)
                      +.+.|.|.+   .++||++++|..+|++.||||....
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            468888886   4999999999999999999999886

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.54  E-value=1.8  Score=31.10  Aligned_cols=46  Identities=17%  Similarity=0.165  Sum_probs=36.0

Q ss_pred             ceEEEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEE
Q 022552          215 KRSLLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHV  262 (295)
Q Consensus       215 ~~t~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V  262 (295)
                      +...|.|.+   +++||++++|..+|++.||+|....-.+ ++ ..=.|.|
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~-Se-~~Isf~V   62 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS-SE-TNISLVV   62 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC-TT-CCEEEEE
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccC-Cc-ceEEEEE
Confidence            468888987   6999999999999999999999865333 22 3345777

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.51  E-value=1.7  Score=28.95  Aligned_cols=45  Identities=11%  Similarity=0.124  Sum_probs=32.4

Q ss_pred             EEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEee
Q 022552          103 IVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  149 (295)
Q Consensus       103 ~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~  149 (295)
                      .|.+.+   +++||+.+++..+|++.|+||.--...+..-..  .|.|.+
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~I--s~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNI--SFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEE--EEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceE--EEEEeH
Confidence            567776   699999999999999999999864433332222  366654

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.71  E-value=1.5  Score=31.54  Aligned_cols=48  Identities=8%  Similarity=0.098  Sum_probs=35.2

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEEEEEcCCeEEEEEEEee
Q 022552          100 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITR  149 (295)
Q Consensus       100 ~~t~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~I~T~~~~~~D~F~V~~  149 (295)
                      +...|++.+   +++||+.+++..+|++.|+||.--...+.....  .|.|..
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~I--sf~V~~   64 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNI--SLVVSE   64 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCE--EEEECS
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceE--EEEEeH
Confidence            456888887   799999999999999999999965433322222  366643

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.98  E-value=0.6  Score=33.37  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             CeEEEEEEe---CCCccHHHHHHHHHHHCCceEEEEE
Q 022552          100 DATIVQLSF---GDRLGALIDTMNALKDLGLDVAKGT  133 (295)
Q Consensus       100 ~~t~V~V~~---~DrpGLl~~I~~vL~~~glnI~~A~  133 (295)
                      +.+.|+|.+   +++||.++++..+|++.|+||.--.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            457888986   5999999999999999999999764

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=81.69  E-value=0.8  Score=30.77  Aligned_cols=44  Identities=7%  Similarity=0.203  Sum_probs=32.4

Q ss_pred             EEEEEe---CCCcchHHHHHHHHHhCCceEEEEEEEecCCeeeeEEEEE
Q 022552          218 LLYIET---ADRPGLLVEIMKIIADVNVDVESAEIDTEGLVAKDKFHVS  263 (295)
Q Consensus       218 ~IeV~a---~DRPGLL~dIt~~L~~~gI~I~~A~I~T~g~~a~D~F~V~  263 (295)
                      +|.+.+   .++||+..++..+|++.||||....-.+-  ...=.|.|.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~S--e~~Is~~V~   49 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS--EVNISFVID   49 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSC--SSEEEEEEE
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCc--cceEEEEEe
Confidence            566665   58999999999999999999987764321  233447773