Citrus Sinensis ID: 022566

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE
Secondary Structure (PSIPRED)
ccHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccccEEccccccccHccccccEEEEEEEcccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mtnfvlknsylhgfstfvplpapnsilfgtstSKVLVssrqgsvglsvtdkQLIKVRFCAVESKQEALLQTQmgewedpddgsgseydddddddeegevkendldfesdweeersgigaaasgdaaTTISKYEEDLLKEVEQLLEPEereilnqnatpnlgkistakwrplqtLTLSMQIRYMDMLLdggldidsvdkdgatplHYAVQVGAMQSVKLLIKYNVDvnvadnegwtplHIAIQSRNRDIAKVLLIngadksrktkdgktALDMslcygrdfksYDLAKLLKILPVE
Flexible Loop (DISEMBL)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSsrqgsvglsvtdkqLIKVRFCAVESKQEALLQtqmgewedpddgsGSEYDDDDDDDEEGevkendldfesdwEEERSgigaaasgdaaTTISKYEEDLLKEVEQLLEPeereilnqnatpnlgkistakwrplQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLingadksrktkdgktaldmslcygrdfksydLAKLLKILPVE
Low Complexity Region (SEG)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWedpddgsgseydddddddeegeVKENDLDFESDWEEERsgigaaasgdaattisKYEEDllkeveqllepeereilNQNATPNLGKISTAKWRPLQTLTLSMQIRYmdmlldggldIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE
Disordered region (IsUnstruct)
***FVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVES***********************************************************************************************NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA**********TALDMSLCYGRDFKSYDLAKLLKIL***
Disordered Region (DISOPRED)
*TNFV**NSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQ************SEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP**
Disordered Region (DISEMBL)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGE*************************ENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE
Disordered Region (DISPRO)
*TNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q9SQK3	315	Ankyrin repeat domain-con	yes	no	0.881	0.825	0.519	5e-75
Q05753	435	Ankyrin repeat domain-con	no	no	0.518	0.351	0.374	1e-28
O95271	1327	Tankyrase-1 OS=Homo sapie	yes	no	0.477	0.106	0.350	3e-15
Q6PFX9	1320	Tankyrase-1 OS=Mus muscul	yes	no	0.477	0.106	0.350	3e-15
Q3UES3	1166	Tankyrase-2 OS=Mus muscul	no	no	0.474	0.120	0.346	4e-14
Q9H2K2	1166	Tankyrase-2 OS=Homo sapie	no	no	0.474	0.120	0.346	4e-14
Q8BZ25	745	Ankyrin repeat and protei	no	no	0.383	0.151	0.347	9e-14
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.410	0.064	0.341	2e-13
Q5F478	990	Serine/threonine-protein	no	no	0.4	0.119	0.378	3e-13
Q02357	1862	Ankyrin-1 OS=Mus musculus	no	no	0.410	0.064	0.333	3e-13

>sp|Q9SQK3|EM506_ARATH Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1

 Score =  281 bits (718), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 160/308 (51%), Positives = 196/308 (63%), Gaps = 48/308 (15%)

Query: 20  LPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDP 79
           LP  +S+   +     L +S +GS   SV  +   + R     +++   +Q++   WEDP
Sbjct: 18  LPISDSVNCKSKIVYCLSTSVRGS---SVKRQSTARTRSFTETNRRTPSVQSKHEFWEDP 74

Query: 80  DDGSGSEYDDDDDD-DEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLK 138
           DDGS SE + + ++ D  G    NDLD ESDWE++       +     TT   YEE+L K
Sbjct: 75  DDGSDSENEYEGEEEDGIG----NDLDNESDWEDD-------SRVQKLTTTDNYEEELAK 123

Query: 139 EVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK 198
           EVEQLLEPEER IL QN  PNL  IST  W+PLQTL LSMQI+ MD L++ GLDID VDK
Sbjct: 124 EVEQLLEPEERVILQQNEKPNLKMISTKSWKPLQTLALSMQIQLMDNLIENGLDIDDVDK 183

Query: 199 D---------------------------------GATPLHYAVQVGAMQSVKLLIKYNVD 225
           D                                 GA P+HYAVQVGA+Q+VKLL KYNVD
Sbjct: 184 DNQTALHKAIIGKKEAVISHLLRKGANPHLQDRDGAAPIHYAVQVGALQTVKLLFKYNVD 243

Query: 226 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
           VNVADNEGWTPLHIA+QSRNRDI K+LL NGADK+R+TKDGK ALD++LC+GRDFKSYDL
Sbjct: 244 VNVADNEGWTPLHIAVQSRNRDITKILLTNGADKTRRTKDGKLALDLALCFGRDFKSYDL 303

Query: 286 AKLLKILP 293
            KLLKI+P
Sbjct: 304 VKLLKIMP 311

Involved in the initial differentiation of the proplastid during the embryo development. Also required for correct cotyledon, true leaf and cauline leaf margin development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05753|AKRP_ARATH Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana GN=AKRP PE=1 SV=2

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 100/187 (53%), Gaps = 34/187 (18%)

Query: 141 EQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDS----- 195
            +LL  EE+ +LN    P+L   ++ KW PL TL    +   +D LL   LDI++     
Sbjct: 235 RKLLSKEEKFMLNSR-NPDLAVATSKKWLPLHTLAACGEFYLVDSLLKHNLDINATDVGG 293

Query: 196 ----------------------------VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
                                       +D +GAT +HYAVQ  +  ++KLL+ YN D+N
Sbjct: 294 LTVLHRAIIGKKQAITNYLLRESANPFVLDDEGATLMHYAVQTASAPTIKLLLLYNADIN 353

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
             D +GWTPLH+A+Q+R  DI K+LLI GAD   K KDG T L + L  GR+ ++Y++ K
Sbjct: 354 AQDRDGWTPLHVAVQARRSDIVKLLLIKGADIEVKNKDGLTPLGLCLYLGREIRTYEVMK 413

Query: 288 LLKILPV 294
           LLK  P+
Sbjct: 414 LLKEFPL 420

Involved in the initial differentiation of the proplastid during the embryo development and in plastid differentiation linked to cell differentiation, morphogenesis and organogenesis during the plant life cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|O95271|TNKS1_HUMAN Tankyrase-1 OS=Homo sapiens GN=TNKS PE=1 SV=2

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 123 GDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRY 182
           GDAA  +   ++  L  V++L  PE     N N     G+ ST    PL        +  
Sbjct: 803 GDAAL-LDAAKKGCLARVQKLCTPE-----NINCRDTQGRNST----PLHLAAGYNNLEV 852

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
            + LL+ G D+++ DK G  PLH A   G +    LLIKYN  VN  D   +TPLH A Q
Sbjct: 853 AEYLLEHGADVNAQDKGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQ 912

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMS 273
                +  +LL +GAD + K ++G+T LD++
Sbjct: 913 KGRTQLCALLLAHGADPTMKNQEGQTPLDLA 943

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q6PFX9|TNKS1_MOUSE Tankyrase-1 OS=Mus musculus GN=Tnks PE=1 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 123 GDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRY 182
           GDAA  +   ++  L  V++L  PE     N N     G+ ST    PL        +  
Sbjct: 796 GDAAL-LDAAKKGCLARVQKLCTPE-----NINCRDTQGRNST----PLHLAAGYNNLEV 845

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
            + LL+ G D+++ DK G  PLH A   G +    LLIKYN  VN  D   +TPLH A Q
Sbjct: 846 AEYLLEHGADVNAQDKGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQ 905

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMS 273
                +  +LL +GAD + K ++G+T LD++
Sbjct: 906 KGRTQLCALLLAHGADPTMKNQEGQTPLDLA 936

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q3UES3|TNKS2_MOUSE Tankyrase-2 OS=Mus musculus GN=Tnks2 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 123 GDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRY 182
           GDAA  +   ++  L  V++L  P+     N N     G+ ST    PL        +  
Sbjct: 645 GDAAL-LDAAKKGCLARVKKLSSPD-----NVNCRDTQGRHST----PLHLAAGYNNLEV 694

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
            + LL  G D+++ DK G  PLH A   G +    LLIKYN  VN  D   +TPLH A Q
Sbjct: 695 AEYLLQHGADVNAQDKGGLIPLHNAASYGHVDVAALLIKYNACVNATDKWAFTPLHEAAQ 754

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDM 272
                +  +LL +GAD + K ++G+T LD+
Sbjct: 755 KGRTQLCALLLAHGADPTLKNQEGQTPLDL 784

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles (By similarity).$.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q9H2K2|TNKS2_HUMAN Tankyrase-2 OS=Homo sapiens GN=TNKS2 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 123 GDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRY 182
           GDAA  +   ++  L  V++L  P+     N N     G+ ST    PL        +  
Sbjct: 645 GDAAL-LDAAKKGCLARVKKLSSPD-----NVNCRDTQGRHST----PLHLAAGYNNLEV 694

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
            + LL  G D+++ DK G  PLH A   G +    LLIKYN  VN  D   +TPLH A Q
Sbjct: 695 AEYLLQHGADVNAQDKGGLIPLHNAASYGHVDVAALLIKYNACVNATDKWAFTPLHEAAQ 754

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDM 272
                +  +LL +GAD + K ++G+T LD+
Sbjct: 755 KGRTQLCALLLAHGADPTLKNQEGQTPLDL 784

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q8BZ25|ANKK1_MOUSE Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 64/115 (55%)

Query: 164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN 223
           + + + PL   T   Q     +LL  G D +  D+DG  PLH+A Q G   + +LL+ + 
Sbjct: 400 TASGYTPLLIATQDQQPDLCALLLAHGADTNLADEDGWAPLHFAAQNGDDHTARLLLDHG 459

Query: 224 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
             VN  ++EGWTPLH+A Q+   ++A++L+   AD S    +GKT L ++  +G 
Sbjct: 460 ALVNAREHEGWTPLHLAAQNNFENVARLLVSRQADLSPHEAEGKTPLHVAAYFGH 514

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 151 ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV 210
           +L++ A  NLG  S     PL  +     +   D+L+  G+ +D+  + G TPLH A   
Sbjct: 654 LLSKQANGNLGNKS--GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 711

Query: 211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
           G ++ VK L+++  DVN     G++PLH A Q  + DI  +LL NGA  +  + DG T L
Sbjct: 712 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 771

Query: 271 DMS 273
            ++
Sbjct: 772 AIA 774

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           + PL     + QI  +  LL+ G++ID ++  G T LH A   G    V  LI Y  +VN
Sbjct: 207 YTPLHAAASNGQINIVKHLLNLGVEIDEMNIYGNTALHIACYNGQDSVVNELIDYGANVN 266

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
             +N G+TPLH A  S +  +   LL+ NGAD + ++KDGK+ L M+  +GR  +S  L
Sbjct: 267 QPNNNGFTPLHFAAASTHGALCLELLVNNGADVNIQSKDGKSPLHMTAVHGRFTRSQTL 325

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 151 ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV 210
           +L++ A  NLG  S     PL  ++    +   D+L+  G+ +D+  + G TPLH A   
Sbjct: 650 LLSKQANGNLGNKS--GLTPLHLVSQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHY 707

Query: 211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
           G ++ VK L+++  DVN     G++PLH A Q  + DI  +LL NGA  +  + +G T L
Sbjct: 708 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPL 767

Query: 271 DMS 273
            ++
Sbjct: 768 AIA 770

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
224060757	255	predicted protein [Populus trichocarpa]	0.752	0.870	0.594	2e-80
449492678	319	PREDICTED: ankyrin repeat domain-contain	0.915	0.846	0.524	3e-79
225452545	322	PREDICTED: ankyrin repeat domain-contain	0.8	0.732	0.610	1e-78
449449192	319	PREDICTED: ankyrin repeat domain-contain	0.915	0.846	0.521	1e-78
255552692	343	aberrant large forked product, putative	0.905	0.778	0.507	2e-78
15242597	315	ankyrin repeat domain-containing protein	0.881	0.825	0.519	3e-73
296087710	232	unnamed protein product [Vitis vinifera]	0.657	0.836	0.631	3e-72
224097124	226	predicted protein [Populus trichocarpa]	0.650	0.849	0.611	4e-70
124359844	317	Ankyrin [Medicago truncatula]	0.874	0.813	0.492	2e-68
357450483	309	Ankyrin repeat domain-containing protein	0.874	0.834	0.492	2e-68

>gi|224060757|ref|XP_002300264.1| predicted protein [Populus trichocarpa] gi|222847522|gb|EEE85069.1| predicted protein [Populus trichocarpa]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/259 (59%), Positives = 185/259 (71%), Gaps = 37/259 (14%)

Query: 69  LQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATT 128
           L+T+ G WEDPDDGSGS+YD +D    E E KENDLDF+S+WEEE++ + A ++   +TT
Sbjct: 1   LETKHGVWEDPDDGSGSDYDQED----EEEAKENDLDFDSNWEEEKNSVTATSTVTNSTT 56

Query: 129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYM----- 183
            + Y EDL+KEVEQLL PEER I  QNA+PNL KISTAKW PLQTL LS QI++M     
Sbjct: 57  ENNYGEDLVKEVEQLLGPEERAIFQQNASPNLRKISTAKWNPLQTLALSGQIKFMDKLLD 116

Query: 184 ----------------------------DMLLDGGLDIDSVDKDGATPLHYAVQVGAMQS 215
                                         LL  G      D+DGA+PLHYAVQVGAMQ+
Sbjct: 117 DGLDIDDQDNDGFTALHKAIIGKKEAVISHLLRKGASPHIRDRDGASPLHYAVQVGAMQT 176

Query: 216 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC 275
           VKLL+KY VDVN ADNEGWTPLHIA+QSRNRDIAKVLL+NGADK+R+TKDG T LD+SLC
Sbjct: 177 VKLLLKYEVDVNAADNEGWTPLHIAVQSRNRDIAKVLLVNGADKTRRTKDGMTPLDLSLC 236

Query: 276 YGRDFKSYDLAKLLKILPV 294
           +G+DFKS+D+AKLLK+LP 
Sbjct: 237 FGKDFKSFDIAKLLKVLPT 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492678|ref|XP_004159069.1| PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like [Cucumis sativus]

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 170/324 (52%), Positives = 208/324 (64%), Gaps = 54/324 (16%)

Query: 13  GFSTFVPLPAPNSILFGTSTSKVL---------VSSRQGSVGLSVTDKQLIKVRFCAVES 63
             STFVP  AP   +  T++S +L         V  R+  + LS++ K+ ++VR    +S
Sbjct: 4   AMSTFVPFEAPPVYVVATASSPLLGCTINCLDVVGPRRTELQLSLS-KKWLRVRTFVTKS 62

Query: 64  KQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASG 123
            Q +  Q++   WEDPDDGSGSE D++DD          DLDFESDWE E + + A +  
Sbjct: 63  NQVSFSQSRQETWEDPDDGSGSESDEEDD---------YDLDFESDWEGEEN-VQAVSII 112

Query: 124 DAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYM 183
           D     +KYEEDL KEVEQLLEPEER IL QNAT N+ K+ST KW PL T  LS QI  M
Sbjct: 113 DQPAA-NKYEEDLQKEVEQLLEPEERAILEQNATLNVEKLSTPKWNPLHTFALSGQIIPM 171

Query: 184 DMLLDGGLDIDSV---------------------------------DKDGATPLHYAVQV 210
           D LLD G DIDSV                                 DK+GATPLHYAVQV
Sbjct: 172 DKLLDSGFDIDSVDEDGFSALHKAIIGRKDAVIGHLLRKGASPHIKDKNGATPLHYAVQV 231

Query: 211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
           GA Q VKLLIKY VDVNVAD++GWT LHIAIQ RNRDI K+LL+NGAD++R+ KDGKTAL
Sbjct: 232 GAKQIVKLLIKYKVDVNVADSDGWTALHIAIQGRNRDITKILLVNGADRNRRNKDGKTAL 291

Query: 271 DMSLCYGRDFKSYDLAKLLKILPV 294
           D+SLCYG++FKSYDL+KLLK++P+
Sbjct: 292 DLSLCYGKNFKSYDLSKLLKVVPL 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452545|ref|XP_002275234.1| PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic [Vitis vinifera] gi|147786877|emb|CAN75542.1| hypothetical protein VITISV_022633 [Vitis vinifera]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 168/275 (61%), Positives = 194/275 (70%), Gaps = 39/275 (14%)

Query: 52  QLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWE 111
           + +KVR CAV+  + + LQ +   WEDPDDGSGSEYDD     E+ E++E DLDFESDWE
Sbjct: 49  ECLKVRICAVDRNRVSSLQPRTRAWEDPDDGSGSEYDD-----EDEEMEEYDLDFESDWE 103

Query: 112 EERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPL 171
           EE+    A  +G   +T  KYE DL+KEV QLL PEER+IL QNA PNL KISTAKW PL
Sbjct: 104 EEKDA-SATVTGVNKSTARKYEADLVKEVVQLLGPEERQILQQNAAPNLEKISTAKWSPL 162

Query: 172 QTLTLSMQIRYMDMLLDGGLDIDSVDK--------------------------------- 198
            TL LS QI  MD LL  GLDID+VDK                                 
Sbjct: 163 HTLALSGQIHSMDKLLANGLDIDNVDKDGLTALHRAIIGKKEAVISHLLRKGANPHVRDR 222

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           DGATPLHYAVQVGAMQ+VKLLIKYNVD+N ADNEGWTPLHIAIQSRNR IAK LL+NGAD
Sbjct: 223 DGATPLHYAVQVGAMQTVKLLIKYNVDINAADNEGWTPLHIAIQSRNRIIAKRLLVNGAD 282

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 293
           K+R+ +DGKT LD+SLCYG+DFKSY+LAKLLK++P
Sbjct: 283 KTRRNQDGKTPLDLSLCYGKDFKSYELAKLLKLVP 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449192|ref|XP_004142349.1| PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like [Cucumis sativus]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/324 (52%), Positives = 207/324 (63%), Gaps = 54/324 (16%)

Query: 13  GFSTFVPLPAPNSILFGTSTSKVL---------VSSRQGSVGLSVTDKQLIKVRFCAVES 63
             ST VP  AP   +  T++S +L         V  R+  + LS++ K+ ++VR    +S
Sbjct: 4   AMSTLVPFEAPPVYVVATASSPLLGCTINCLDVVGPRRTELQLSLS-KKWLRVRTFVTKS 62

Query: 64  KQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASG 123
            Q +  Q++   WEDPDDGSGSE D++DD          DLDFESDWE E + + A +  
Sbjct: 63  NQVSFSQSRQETWEDPDDGSGSESDEEDD---------YDLDFESDWEGEEN-VQAVSII 112

Query: 124 DAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYM 183
           D     +KYEEDL KEVEQLLEPEER IL QNAT N+ K+ST KW PL T  LS QI  M
Sbjct: 113 DQPAA-NKYEEDLQKEVEQLLEPEERAILEQNATLNVEKLSTPKWNPLHTFALSGQIIPM 171

Query: 184 DMLLDGGLDIDSV---------------------------------DKDGATPLHYAVQV 210
           D LLD G DIDSV                                 DK+GATPLHYAVQV
Sbjct: 172 DKLLDSGFDIDSVDEDGFSALHKAIIGRKDAVIGHLLRKGASPHIKDKNGATPLHYAVQV 231

Query: 211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
           GA Q VKLLIKY VDVNVAD++GWT LHIAIQ RNRDI K+LL+NGAD++R+ KDGKTAL
Sbjct: 232 GAKQIVKLLIKYKVDVNVADSDGWTALHIAIQGRNRDITKILLVNGADRNRRNKDGKTAL 291

Query: 271 DMSLCYGRDFKSYDLAKLLKILPV 294
           D+SLCYG++FKSYDL+KLLK++P+
Sbjct: 292 DLSLCYGKNFKSYDLSKLLKVVPL 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552692|ref|XP_002517389.1| aberrant large forked product, putative [Ricinus communis] gi|223543400|gb|EEF44931.1| aberrant large forked product, putative [Ricinus communis]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/333 (50%), Positives = 202/333 (60%), Gaps = 66/333 (19%)

Query: 20  LPAPN-SILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWED 78
           LP P  +   GTST   L  +  GS    + +K   K+  C VESK     +   G WED
Sbjct: 13  LPLPRFAATPGTSTGTNLFKASTGSFDFLLANK-CRKLTTCRVESKWAYPSERLPGVWED 71

Query: 79  PDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAAT----------- 127
           PDDGSGS+YD      E  E++END+D+ESDWEEE          D +T           
Sbjct: 72  PDDGSGSDYD------EVEELEENDMDYESDWEEETYAKSTTRIVDYSTSNNYEEDSEEA 125

Query: 128 --------------TISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQT 173
                         T   YEEDL KE+ QLL+PEER IL QNAT NL K+STAKW+PLQT
Sbjct: 126 TYVASTSTTTVRNSTSKNYEEDLSKEIIQLLQPEERAILQQNATYNLDKLSTAKWKPLQT 185

Query: 174 LTLSMQIRYMDMLLDGGLDIDSVDK---------------------------------DG 200
           L LS QIR+MD LL  GLDIDSVDK                                 DG
Sbjct: 186 LALSGQIRFMDKLLADGLDIDSVDKDGLTALHKAIVGKKEAVISHLLRKGANPHVKDRDG 245

Query: 201 ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 260
           A+ LHYAVQ+GA+Q+VKLLIKYNVD+NVADNEGWTPLH+A+Q+R RDI KVLL+NGADK+
Sbjct: 246 ASSLHYAVQIGALQTVKLLIKYNVDINVADNEGWTPLHVAVQTRKRDIVKVLLVNGADKN 305

Query: 261 RKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 293
           RK KDG T +D+ LCYG+DFKSYDLAKL+K++P
Sbjct: 306 RKNKDGMTPVDLCLCYGKDFKSYDLAKLVKVVP 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242597|ref|NP_198832.1| ankyrin repeat domain-containing protein EMB506 [Arabidopsis thaliana] gi|75313777|sp|Q9SQK3.1|EM506_ARATH RecName: Full=Ankyrin repeat domain-containing protein EMB506, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 506; Flags: Precursor gi|5911312|gb|AAD55746.1|AF026167_1 ankyrin repeat protein EMB506 [Arabidopsis thaliana] gi|10177503|dbj|BAB10897.1| ankyrin repeat protein EMB506 [Arabidopsis thaliana] gi|17380824|gb|AAL36099.1| putative ankyrin repeat protein EMB506 [Arabidopsis thaliana] gi|21436371|gb|AAM51355.1| putative ankyrin repeat protein EMB506 [Arabidopsis thaliana] gi|332007132|gb|AED94515.1| ankyrin repeat domain-containing protein EMB506 [Arabidopsis thaliana]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 160/308 (51%), Positives = 196/308 (63%), Gaps = 48/308 (15%)

Query: 20  LPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDP 79
           LP  +S+   +     L +S +GS   SV  +   + R     +++   +Q++   WEDP
Sbjct: 18  LPISDSVNCKSKIVYCLSTSVRGS---SVKRQSTARTRSFTETNRRTPSVQSKHEFWEDP 74

Query: 80  DDGSGSEYDDDDDD-DEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLK 138
           DDGS SE + + ++ D  G    NDLD ESDWE++       +     TT   YEE+L K
Sbjct: 75  DDGSDSENEYEGEEEDGIG----NDLDNESDWEDD-------SRVQKLTTTDNYEEELAK 123

Query: 139 EVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK 198
           EVEQLLEPEER IL QN  PNL  IST  W+PLQTL LSMQI+ MD L++ GLDID VDK
Sbjct: 124 EVEQLLEPEERVILQQNEKPNLKMISTKSWKPLQTLALSMQIQLMDNLIENGLDIDDVDK 183

Query: 199 D---------------------------------GATPLHYAVQVGAMQSVKLLIKYNVD 225
           D                                 GA P+HYAVQVGA+Q+VKLL KYNVD
Sbjct: 184 DNQTALHKAIIGKKEAVISHLLRKGANPHLQDRDGAAPIHYAVQVGALQTVKLLFKYNVD 243

Query: 226 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
           VNVADNEGWTPLHIA+QSRNRDI K+LL NGADK+R+TKDGK ALD++LC+GRDFKSYDL
Sbjct: 244 VNVADNEGWTPLHIAVQSRNRDITKILLTNGADKTRRTKDGKLALDLALCFGRDFKSYDL 303

Query: 286 AKLLKILP 293
            KLLKI+P
Sbjct: 304 VKLLKIMP 311

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087710|emb|CBI34966.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 144/228 (63%), Positives = 163/228 (71%), Gaps = 34/228 (14%)

Query: 99  VKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATP 158
           ++E DLDFESDWEEE+    A  +G   +T  KYE DL+KEV QLL PEER+IL QNA P
Sbjct: 1   MEEYDLDFESDWEEEKDA-SATVTGVNKSTARKYEADLVKEVVQLLGPEERQILQQNAAP 59

Query: 159 NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDG------------------ 200
           NL KISTAKW PL TL LS QI  MD LL  GLDID+VDKDG                  
Sbjct: 60  NLEKISTAKWSPLHTLALSGQIHSMDKLLANGLDIDNVDKDGLTALHRAIIGKKEAVISH 119

Query: 201 ---------------ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
                          ATPLHYAVQVGAMQ+VKLLIKYNVD+N ADNEGWTPLHIAIQSRN
Sbjct: 120 LLRKGANPHVRDRDGATPLHYAVQVGAMQTVKLLIKYNVDINAADNEGWTPLHIAIQSRN 179

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 293
           R IAK LL+NGADK+R+ +DGKT LD+SLCYG+DFKSY+LAKLLK++P
Sbjct: 180 RIIAKRLLVNGADKTRRNQDGKTPLDLSLCYGKDFKSYELAKLLKLVP 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097124|ref|XP_002334642.1| predicted protein [Populus trichocarpa] gi|222873864|gb|EEF10995.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (691), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/229 (61%), Positives = 164/229 (71%), Gaps = 37/229 (16%)

Query: 69  LQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATT 128
           L+T+ G WEDPDDGSGS+YD +D    E E KENDLDFES+WEEE++ + A ++   +TT
Sbjct: 2   LETKDGVWEDPDDGSGSDYDQED----EEEAKENDLDFESNWEEEKNSVTATSTVTNSTT 57

Query: 129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLD 188
            + Y EDL+KEVEQLL PEER I  QNA+PNL KISTAKW PLQTL LS QI++MD LLD
Sbjct: 58  ENNYGEDLVKEVEQLLGPEERAIFQQNASPNLRKISTAKWNPLQTLALSGQIKFMDKLLD 117

Query: 189 GGLDIDS---------------------------------VDKDGATPLHYAVQVGAMQS 215
            GLDID                                   D+DGA+PLHYAVQVGAMQ+
Sbjct: 118 DGLDIDGQDNDGLTALHKAIIGKKEAVISHLLRKGASPHIRDRDGASPLHYAVQVGAMQT 177

Query: 216 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK 264
           VKLL+KY VDVN ADNEGWTPLHIA+QSRNRDIAKVLL+NGADK+R+TK
Sbjct: 178 VKLLLKYEVDVNAADNEGWTPLHIAVQSRNRDIAKVLLVNGADKTRRTK 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359844|gb|ABD32433.2| Ankyrin [Medicago truncatula]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/313 (49%), Positives = 193/313 (61%), Gaps = 55/313 (17%)

Query: 17  FVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQE-ALLQTQ--M 73
            +P P  NS L G S  K+  S+ +    LS + +        A++S +  + LQTQ  +
Sbjct: 22  LIPFPTTNSKL-GASFQKIYRSTTKQKSRLSFSRENCESRSNVAIKSSRGVSSLQTQQEL 80

Query: 74  GEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYE 133
             WEDPD  S       D DDE G+ ++  L F++D E++ +            T  +YE
Sbjct: 81  RTWEDPDIRS-------DSDDEYGDEEDKSLGFKNDGEQKET-----------ETQDEYE 122

Query: 134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI 193
           E + KEVE+LL+PEE EIL QN TPNL KIS+ KW PL +L LS QI  MD LL+ G DI
Sbjct: 123 ERIKKEVERLLKPEELEILQQNITPNLEKISSEKWNPLHSLGLSFQIYSMDKLLESGHDI 182

Query: 194 DSV---------------------------------DKDGATPLHYAVQVGAMQSVKLLI 220
           DS+                                 DKDGATPLHYAV+VGA Q+VKLLI
Sbjct: 183 DSINKEGLTALHKAVIGKKEAVISHLLRKGASPHIQDKDGATPLHYAVEVGAKQTVKLLI 242

Query: 221 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 280
           KYNVDVNVADNEGWTPLH+A+QSRNRDIAK+LL NGAD+S + KDGKTALD+S+CYG+DF
Sbjct: 243 KYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLANGADRSTENKDGKTALDISICYGKDF 302

Query: 281 KSYDLAKLLKILP 293
            SYDLA+L+KI P
Sbjct: 303 MSYDLARLIKIGP 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450483|ref|XP_003595518.1| Ankyrin repeat domain-containing protein EMB506 [Medicago truncatula] gi|355484566|gb|AES65769.1| Ankyrin repeat domain-containing protein EMB506 [Medicago truncatula]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/313 (49%), Positives = 193/313 (61%), Gaps = 55/313 (17%)

Query: 17  FVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQE-ALLQTQ--M 73
            +P P  NS L G S  K+  S+ +    LS + +        A++S +  + LQTQ  +
Sbjct: 14  LIPFPTTNSKL-GASFQKIYRSTTKQKSRLSFSRENCESRSNVAIKSSRGVSSLQTQQEL 72

Query: 74  GEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYE 133
             WEDPD  S       D DDE G+ ++  L F++D E++ +            T  +YE
Sbjct: 73  RTWEDPDIRS-------DSDDEYGDEEDKSLGFKNDGEQKET-----------ETQDEYE 114

Query: 134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI 193
           E + KEVE+LL+PEE EIL QN TPNL KIS+ KW PL +L LS QI  MD LL+ G DI
Sbjct: 115 ERIKKEVERLLKPEELEILQQNITPNLEKISSEKWNPLHSLGLSFQIYSMDKLLESGHDI 174

Query: 194 DSV---------------------------------DKDGATPLHYAVQVGAMQSVKLLI 220
           DS+                                 DKDGATPLHYAV+VGA Q+VKLLI
Sbjct: 175 DSINKEGLTALHKAVIGKKEAVISHLLRKGASPHIQDKDGATPLHYAVEVGAKQTVKLLI 234

Query: 221 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 280
           KYNVDVNVADNEGWTPLH+A+QSRNRDIAK+LL NGAD+S + KDGKTALD+S+CYG+DF
Sbjct: 235 KYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLANGADRSTENKDGKTALDISICYGKDF 294

Query: 281 KSYDLAKLLKILP 293
            SYDLA+L+KI P
Sbjct: 295 MSYDLARLIKIGP 307

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2173767	315	EMB506 "embryo defective 506"	0.328	0.307	0.814	2.2e-41
TAIR|locus:505006718	435	AKRP "ankyrin repeat protein"	0.335	0.227	0.505	5.8e-24
UNIPROTKB|F1NXP5	745	F1NXP5 "Uncharacterized protei	0.274	0.108	0.456	6.7e-15
UNIPROTKB|F1NNF9	765	F1NNF9 "Uncharacterized protei	0.274	0.105	0.456	7e-15
MGI|MGI:1915951	154	Ppp1r27 "protein phosphatase 1	0.315	0.603	0.408	1.6e-13
RGD|1308861	154	Ppp1r27 "protein phosphatase 1	0.315	0.603	0.408	2.7e-13
UNIPROTKB|E2R515	154	PPP1R27 "Uncharacterized prote	0.315	0.603	0.397	4.4e-13
UNIPROTKB|G3MY56	159	PPP1R27 "Uncharacterized prote	0.315	0.584	0.397	7.1e-13
UNIPROTKB|E1C390	130	DYSFIP1 "Uncharacterized prote	0.271	0.615	0.412	1.5e-12
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.261	0.331	0.415	5.8e-12

TAIR|locus:2173767 EMB506 "embryo defective 506" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 79/97 (81%), Positives = 91/97 (93%)

Query:   197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
             D+DGA P+HYAVQVGA+Q+VKLL KYNVDVNVADNEGWTPLHIA+QSRNRDI K+LL NG
Sbjct:   215 DRDGAAPIHYAVQVGALQTVKLLFKYNVDVNVADNEGWTPLHIAVQSRNRDITKILLTNG 274

Query:   257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 293
             ADK+R+TKDGK ALD++LC+GRDFKSYDL KLLKI+P
Sbjct:   275 ADKTRRTKDGKLALDLALCFGRDFKSYDLVKLLKIMP 311

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010027 "thylakoid membrane organization" evidence=RCA

TAIR|locus:505006718 AKRP "ankyrin repeat protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 5.8e-24, P = 5.8e-24
 Identities = 50/99 (50%), Positives = 70/99 (70%)

Query:   196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
             +D +GAT +HYAVQ  +  ++KLL+ YN D+N  D +GWTPLH+A+Q+R  DI K+LLI 
Sbjct:   322 LDDEGATLMHYAVQTASAPTIKLLLLYNADINAQDRDGWTPLHVAVQARRSDIVKLLLIK 381

Query:   256 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV 294
             GAD   K KDG T L + L  GR+ ++Y++ KLLK  P+
Sbjct:   382 GADIEVKNKDGLTPLGLCLYLGREIRTYEVMKLLKEFPL 420

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS;IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NXP5 F1NXP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 200 (75.5 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 37/81 (45%), Positives = 56/81 (69%)

Query:   197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
             D+DG TPLH+A Q G  + V+LL+ +   VN  +++GWTPLH+A Q+   ++A+VLL   
Sbjct:   433 DEDGWTPLHFAAQNGDDRIVRLLLDHQARVNAQEHDGWTPLHLASQNNFENVARVLLSRQ 492

Query:   257 ADKSRKTKDGKTALDMSLCYG 277
             AD + +  DGKTAL ++ C+G
Sbjct:   493 ADSNTQEVDGKTALHVAACFG 513

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NNF9 F1NNF9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 200 (75.5 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 37/81 (45%), Positives = 56/81 (69%)

Query:   197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
             D+DG TPLH+A Q G  + V+LL+ +   VN  +++GWTPLH+A Q+   ++A+VLL   
Sbjct:   425 DEDGWTPLHFAAQNGDDRIVRLLLDHQARVNAQEHDGWTPLHLASQNNFENVARVLLSRQ 484

Query:   257 ADKSRKTKDGKTALDMSLCYG 277
             AD + +  DGKTAL ++ C+G
Sbjct:   485 ADSNTQEVDGKTALHVAACFG 505

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

MGI|MGI:1915951 Ppp1r27 "protein phosphatase 1, regulatory subunit 27" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 40/98 (40%), Positives = 53/98 (54%)

Query:   193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
             +D++   G   LH AV  G ++ VKLL+KY  D++  D  GWTPLHIA      DIA+ L
Sbjct:    57 LDTIHPSGLAALHEAVLSGNLECVKLLVKYGADIHQRDETGWTPLHIACSDGYPDIARYL 116

Query:   253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
             +  GAD+     DG    D+      DFK  DL +L K
Sbjct:   117 ISLGADRDAANDDGDLPSDL---IDPDFK--DLVELFK 149

GO:0004864 "protein phosphatase inhibitor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0019902 "phosphatase binding" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

RGD|1308861 Ppp1r27 "protein phosphatase 1, regulatory subunit 27" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 40/98 (40%), Positives = 53/98 (54%)

Query:   193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
             +D++   G   LH AV  G ++ VKLL+KY  D++  D  GWTPLHIA      DIA+ L
Sbjct:    57 LDTIYPSGLAALHEAVLSGNLECVKLLVKYGADIHQRDETGWTPLHIACSDGYPDIARYL 116

Query:   253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
             +  GAD+     DG    D+      DFK  DL +L K
Sbjct:   117 ISLGADRDATNDDGDLPSDL---IDPDFK--DLVELFK 149

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA;ISO

GO:0019902 "phosphatase binding" evidence=IEA;ISO

UNIPROTKB|E2R515 PPP1R27 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 39/98 (39%), Positives = 53/98 (54%)

Query:   193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
             +D++   G   LH AV  G ++ VKLL+KY  D++  D  GWTPLHIA      DIA+ L
Sbjct:    57 LDTIHPSGLAALHEAVLSGNLECVKLLVKYGADIHQRDETGWTPLHIACSDGYPDIARYL 116

Query:   253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
             +  GAD+     DG    D+      DFK  DL +L +
Sbjct:   117 ISLGADRDATNDDGDLPSDL---IDPDFK--DLVELFQ 149

GO:0019902 "phosphatase binding" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

UNIPROTKB|G3MY56 PPP1R27 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 39/98 (39%), Positives = 53/98 (54%)

Query:   193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
             +D++   G   LH AV  G ++ VKLL+KY  D++  D  GWTPLHIA      DIA+ L
Sbjct:    62 LDTIYPSGLAALHEAVLSGNLECVKLLVKYGADIHQRDETGWTPLHIACSDGYPDIARYL 121

Query:   253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
             +  GAD+     DG    D+      +FK  DL +L K
Sbjct:   122 ISLGADREAANDDGDLPSDL---IDPEFK--DLVELFK 154

GO:0019902 "phosphatase binding" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

UNIPROTKB|E1C390 DYSFIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/80 (41%), Positives = 45/80 (56%)

Query:   193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
             +D++   G   LH AV  G +  VKLL+KY  D++  D  GWTPLH+A    + DIA+ L
Sbjct:    48 LDTIYPSGMAALHQAVLTGNLDCVKLLVKYGADIHQRDENGWTPLHMACSDGHADIARYL 107

Query:   253 LINGADKSRKTKDGKTALDM 272
             L  GA     T DG+   D+
Sbjct:   108 LSLGASLEATTDDGEKPSDL 127

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0019902 "phosphatase binding" evidence=IEA

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 164 (62.8 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query:   197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
             D  G+ P+H A   G++ +V+ L+K   ++N  +NEG TPLHIA +  + D+ + LL +G
Sbjct:   142 DDTGSAPIHRASSNGSVATVERLLKGEANINSTNNEGDTPLHIAAEYNHEDVVECLLKHG 201

Query:   257 ADKSRKTKDGKTALDMS 273
             AD + + KD KT +DMS
Sbjct:   202 ADTTIENKDSKTPIDMS 218

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQK3	EM506_ARATH	No assigned EC number	0.5194	0.8813	0.8253	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.I.4092.1	hypothetical protein (255 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0053014401	hypothetical protein (105 aa)			•						0.418

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-30
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-16
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-15
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-12
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-12
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-11
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-09
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-06
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
smart00248	30	smart00248, ANK, ankyrin repeats	4e-05
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	5e-05
smart00248	30	smart00248, ANK, ankyrin repeats	8e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-04
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	6e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.001
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.001
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.003
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.003
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.003
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  110 bits (276), Expect = 3e-30
 Identities = 44/107 (41%), Positives = 69/107 (64%), Gaps = 4/107 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           + +LL+ G D+++ D DG TPLH A + G ++ VKLL++   DVN  D +G TPLH+A +
Sbjct: 23  VKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR 82

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + N D+ K+LL +GAD + + KDG+T L ++   G      ++ KLL
Sbjct: 83  NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL----EVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 99.4 bits (248), Expect = 5e-26
 Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 4/96 (4%)

Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
           ++ D+DG TPLH A   G ++ VKLL++   DVN  DN+G TPLH+A ++ + +I K+LL
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 254 INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             GAD + + KDG T L ++   G      D+ KLL
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGN----LDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.1 bits (224), Expect = 1e-22
 Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV 208
           + +L   A  N          PL     +  +  + +LL+ G D+++ DKDG TPLH A 
Sbjct: 24  KLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA 81

Query: 209 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
           + G +  VKLL+K+  DVN  D +G TPLH+A ++ + ++ K+LL
Sbjct: 82  RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 83.8 bits (208), Expect = 1e-20
 Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           + +LL+ G D++  D D  T LH A + G ++ VKLL+++  DVN  D +G T LH+A +
Sbjct: 13  VKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAAR 70

Query: 243 SRNRDIAKVLLINGADKSRK 262
           + N +I K+LL +GAD + K
Sbjct: 71  NGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.0 bits (185), Expect = 3e-17
 Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 6/86 (6%)

Query: 204 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 263
           LH A + G ++ VKLL++   DVN+ D +  T LH+A ++ N +I K+LL +GAD + K 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 264 KDGKTALDMSLCYGRDFKSYDLAKLL 289
           KDG TAL ++   G      ++ KLL
Sbjct: 59  KDGNTALHLAARNGN----LEIVKLL 80

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 78.5 bits (193), Expect = 2e-16
 Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 1/100 (1%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           +LD G+D++  D +  T LHYA++ G ++S+K+L +Y  DVN+ D+ G  P+HIAI+   
Sbjct: 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF 169

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
            DI K+LL  GA  + K  +G++ L  +  YG D+    L
Sbjct: 170 FDIIKLLLEKGAYANVKDNNGESPLHNAAEYG-DYACIKL 208

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 32/75 (42%), Positives = 44/75 (58%)

Query: 184 DMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           + LL  G+ I+  D  G TPLHYAV     + VK L+    + N+ +  G TPLHIAI +
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN 235

Query: 244 RNRDIAKVLLINGAD 258
            N++I K+LL NG  
Sbjct: 236 NNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 3/120 (2%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA 229
           PL   T+  ++  M +L+  G D D  + D  +PLH AV +G ++ ++LLI +   +++ 
Sbjct: 105 PLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE 164

Query: 230 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           D  G TPL IA+   +  I K+LL +GA+     K+G  A    LCY  +    D+ +L 
Sbjct: 165 DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAA---LCYAIENNKIDIVRLF 221

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 68.0 bits (166), Expect = 8e-13
 Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 4/106 (3%)

Query: 185 MLLDGGLDIDSVDKD-GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           +LL  G DI+  D+  G T LHYA +    +  +LL+ Y  +VN+ D    +PLH A++ 
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKH 211

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            N+ I  +LL NGA    + K G T L +S+ Y    K YD+ KLL
Sbjct: 212 YNKPIVHILLENGASTDARDKCGNTPLHISVGY---CKDYDILKLL 254

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 24/144 (16%)

Query: 151 ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDM---LLDGGLDIDSVDKDGATPLHYA 207
           +L   A  N          PL    +S +     +   LLD G +++  + DG   LH  
Sbjct: 92  LLEYGANVN--APDNNGITPLL-YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY 148

Query: 208 ------------------VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 249
                             V + A   V  L+ Y V +N+ D  G+TPLH A+ + N +  
Sbjct: 149 LESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208

Query: 250 KVLLINGADKSRKTKDGKTALDMS 273
           K LL  GA+ +   K G T L ++
Sbjct: 209 KYLLDLGANPNLVNKYGDTPLHIA 232

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 48/132 (36%), Positives = 70/132 (53%), Gaps = 12/132 (9%)

Query: 168 WRPLQTLTLSMQIRYMDM---LLDGGLDIDSVDKDGATPLHYAVQVGAMQS-----VKLL 219
            +P+  L L+ + R +D+   LLD G DI+S  K+ +TPLHY   +    +     VKLL
Sbjct: 33  KKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92

Query: 220 IKYNVDVNVADNEGWTPLHIAIQ--SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 277
           ++Y  +VN  DN G TPL  AI   S +  I + LL NGA+ + K  DG+  L + L   
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN 152

Query: 278 RDFKSYDLAKLL 289
           +      + KLL
Sbjct: 153 KI--DLKILKLL 162

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 65.3 bits (159), Expect = 7e-12
 Identities = 26/69 (37%), Positives = 43/69 (62%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL GG D +  D DG TPLH A   G +Q V++L+++  D  + D +G TPL +A ++ 
Sbjct: 100 ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG 159

Query: 245 NRDIAKVLL 253
            R++ ++L 
Sbjct: 160 FREVVQLLS 168

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 23/56 (41%), Positives = 39/56 (69%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 240
           +L  G +D+++ D +G TPLH A + GA++ V+ L+K  VD+N+ D++G T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV 208
           + +L + A  NLG         L     +  +  + +LL+ G D+++ DKDG T LH A 
Sbjct: 14  KLLLEKGADVNLGD----TDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAA 69

Query: 209 QVGAMQSVKLLIKYNVDVNVAD 230
           + G ++ VKLL+++  D+N+ D
Sbjct: 70  RNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 60.6 bits (146), Expect = 8e-11
 Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAV-----QVGAMQSVKLLIKYNV---DVNVADNEGWTPL 237
           LL  G D+++ D DG TPLH A        G ++  KLL++        N+ D +G TPL
Sbjct: 92  LLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL 151

Query: 238 HIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 271
           H A  + + DI ++LL  GAD + +   G TALD
Sbjct: 152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALD 185

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
           T LH A   G ++ VK L++  VD+N  D +G T LHIA ++ N ++ K+LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 58.7 bits (141), Expect = 3e-10
 Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 147 EEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL----DIDSVDKDGAT 202
            +  ++      +L   + +  +    L L++        L   L     + + D DG  
Sbjct: 16  LDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRL 75

Query: 203 PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI-----QSRNRDIAKVLLINGA 257
           PLH A   G  + VKLL+    DVN  D +G TPLH+A         N ++AK+LL  GA
Sbjct: 76  PLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA 135

Query: 258 DKS---RKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           D      + +DG T L  +   G      D+ +LL
Sbjct: 136 DLDVNNLRDEDGNTPLHWAALNGDA----DIVELL 166

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 59.7 bits (144), Expect = 5e-10
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 179 QIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH 238
           ++   +MLL+GG D+++ D    TP+HYA + G  + V LL+ Y  DVN+   +  + L 
Sbjct: 157 ELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLE 216

Query: 239 IAIQSRNRDIAKVLL-----INGADKSRKTKDGKTALDMSL 274
            A+ S+N D  K ++     IN  D S         L+ SL
Sbjct: 217 CAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSL 257

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 218 LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 272
           LL    +D+N  D  G TPLH+A +    ++ + LL  G D + +  DG TALD+
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 15/159 (9%)

Query: 130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQT-LTLSMQIRYMDMLLD 188
               E +   V  LLE          A  ++       + PL   L  +  +  + +L+ 
Sbjct: 56  HYSSEKVKDIVRLLLE----------AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIK 105

Query: 189 GGLDIDSVDKDGATPLH-YAVQVGAMQSV-KLLIKYNVDVNVADNEGWTPLHIAIQSRNR 246
            G D+++ DK G TPLH Y         V +LL++   DVN  D  G TPL + ++SRN 
Sbjct: 106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNA 165

Query: 247 DIAKV-LLIN-GADKSRKTKDGKTALDMSLCYGRDFKSY 283
           ++  + LLI+ GAD        ++ L   L   +     
Sbjct: 166 NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARI 204

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.4 bits (135), Expect = 2e-09
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)

Query: 179 QIRYMDMLLDGGLDIDSV---DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWT 235
            I    +LL+ G D+D     D+DG TPLH+A   G    V+LL++   D N  ++ G T
Sbjct: 123 NIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVT 182

Query: 236 PLHIAIQSRNRDIAKVLL 253
            L  A ++   ++ K+LL
Sbjct: 183 ALDPAAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +L+D G  I +  K+G TPLH A+ +    +++LLI  N  +N  D +G TPLH AI   
Sbjct: 208 LLIDHGNHIMNKCKNGFTPLHNAI-IHNRSAIELLIN-NASINDQDIDGSTPLHHAINPP 265

Query: 245 -NRDIAKVLLINGADKSRKTKDGKTALDMSLCY 276
            + DI  +LL + AD S K   G+  +D +  Y
Sbjct: 266 CDIDIIDILLYHKADISIKDNKGENPIDTAFKY 298

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 12/109 (11%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSV-DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 228
            L        ++ ++ LLD G   D V  KDG TPLH A  +  +  +KLLI    D ++
Sbjct: 71  ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI 130

Query: 229 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 277
            + + ++PLH+A+   +    ++L+           D K  LD+  C G
Sbjct: 131 PNTDKFSPLHLAVMMGDIKGIELLI-----------DHKACLDIEDCCG 168

Length = 413

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 30/96 (31%), Positives = 51/96 (53%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           + ML + G D++  D +G  P+H A++      +KLL++     NV DN G +PLH A +
Sbjct: 140 IKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE 199

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
             +    K+L+ +G     K K+G T L  ++ + R
Sbjct: 200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR 235

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA 229
           P+           + +LL+ G   +  D +G +PLH A + G    +KLLI +   +   
Sbjct: 160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219

Query: 230 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 276
              G+TPLH AI   NR   + LLIN A  + +  DG T L  ++  
Sbjct: 220 CKNGFTPLHNAI-IHNRSAIE-LLINNASINDQDIDGSTPLHHAINP 264

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA 229
            L   T +   R  ++LL  G +++  DK   +PLH+AV+      V +L++     +  
Sbjct: 171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR 230

Query: 230 DNEGWTPLHIAIQS-RNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
           D  G TPLHI++   ++ DI K+LL +G D  ++    G TAL  S+      KS    K
Sbjct: 231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI------KSERKLK 284

Query: 288 LL 289
           LL
Sbjct: 285 LL 286

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 14/110 (12%)

Query: 181 RYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQS-------VKLLIKYNVDVNVADNEG 233
           R +  L+  G D  + D  G TPLH      A  S       + LLI   + +N  +  G
Sbjct: 203 RIVRELIRAGCDPAATDMLGNTPLHSM----ATGSSCKRSLVLPLLIA-GISINARNRYG 257

Query: 234 WTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL--CYGRDFK 281
            TPLH A    N    + L+  GAD +  + DG T L + +    GR  +
Sbjct: 258 QTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVR 307

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 231
           DG TPLH A + G ++ VKLL++   DVN  D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 7/109 (6%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHI-----A 240
           ++      D   K    PL+ A +   +  VK+L+    D+N +     TPLH       
Sbjct: 21  IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY 80

Query: 241 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             +  ++I K+LL  GA+ +    +G T L       +   SY + + L
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPL--LYAISKKSNSYSIVEYL 127

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.9 bits (107), Expect = 5e-07
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 232 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK 264
           +G TPLH+A ++ + ++ K+LL  GAD + + K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 7/85 (8%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVG-AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           LL     I+  D DG+TPLH+A+     +  + +L+ +  D+++ DN+G  P+  A +  
Sbjct: 240 LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYI 299

Query: 245 NRD------IAKVLLINGADKSRKT 263
           N+D      IA  +LI  ADK + +
Sbjct: 300 NKDPVIKDIIANAVLIKEADKLKDS 324

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 11/153 (7%)

Query: 124 DAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPL----QTLTLSMQ 179
           D  + I+K +  LLK +    E  E  +L  +A  ++  I   K  PL    Q  +LS  
Sbjct: 232 DNRSNINKNDLSLLKAIRN--EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLS-- 287

Query: 180 IRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG-AMQSVKLLIKYNVDVNVADNEGWTPLH 238
            R +  LL+ G D+++ +  G TPL+   + G   ++++ LI    DVN AD    TPLH
Sbjct: 288 -RLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLH 346

Query: 239 IA-IQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
            A    RN+DI   LL  GA+ + +    KT +
Sbjct: 347 QASTLDRNKDIVITLLELGANVNARDYCDKTPI 379

Length = 682

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 192 DIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI-QSRNRDIAK 250
           DI+ +DK G T LH AV+      V LL++   DVN+  N G+T + IAI +SRN ++ K
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLK 503

Query: 251 VLL 253
           +LL
Sbjct: 504 MLL 506

Length = 661

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 195 SVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 254
           SVD +  TPL  A++ G  + V+L IK+  D+N  + +   PL  AI+    DI K+L+ 
Sbjct: 31  SVD-ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLID 89

Query: 255 NGADKS 260
           NG D S
Sbjct: 90  NGVDTS 95

Length = 434

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 14/133 (10%)

Query: 170 PLQTLTLSMQIRYMDML------LDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLL---I 220
           PL T+ LS    Y  ML      ++ G DI+  + DG TPL+  +  G + ++++L   I
Sbjct: 74  PLCTI-LSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMI 132

Query: 221 KYNVDVNVADNEGWTPLHIAIQSRNR---DIAKVLLINGAD-KSRKTKDGKTALDMSLCY 276
           +   D  + D +G+T L + +QS +    +I K+LL  G D  +   K+    L     Y
Sbjct: 133 ENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKY 192

Query: 277 GRDFKSYDLAKLL 289
             D    D+ KL 
Sbjct: 193 NIDRIDADILKLF 205

Length = 489

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 182 YMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 241
            +  LL  G+ I++ ++ G TPLHYA      ++ + LI    D+N   ++G TPL + +
Sbjct: 239 LVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMV 298

Query: 242 QSRNRDIAKVLL 253
           ++ N    +  L
Sbjct: 299 RNNNGRAVRAAL 310

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 180 IRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLI 220
           +  +  LL+ G+DI+  D+DG T LH A + G ++ +KLL+
Sbjct: 14  LELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 216 VKLLIKYNVDVNVADNEGWTPLHIAIQSRN---RDIAKVLLINGADKSRKTKDGKTALDM 272
           V+ L+    DVN     G TPLH+ +   +   +DI ++LL  GAD +   + G T L +
Sbjct: 30  VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHL 89

Query: 273 SLCYGRDFKSYDLAKLL 289
            L       + D+ KLL
Sbjct: 90  YLYNA---TTLDVIKLL 103

Length = 471

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query: 182 YMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 241
            ++ LL   LD D  D  G TPLH A   G    V +L+K+  +V++ D  G T L  AI
Sbjct: 540 LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI 599

Query: 242 QSRNRDIAKVL 252
            +++  I ++L
Sbjct: 600 SAKHHKIFRIL 610

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 233 GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           G T LH A  S   ++ K LL  G D +R  +DG TAL ++   G      ++ KLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGN----LEVLKLL 53

Length = 54

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV-QVGAMQSVKLLIKYNVDVNV 228
           P+    +   +  ++ LLD G DI+++ +   T LH+A+       SVK LI    +VN 
Sbjct: 378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS 437

Query: 229 ADNEGWTPLHIAIQSRNR-DIAKVLLINGAD 258
            + +  TPLH A +   + D+ ++LL NGAD
Sbjct: 438 KNKDLSTPLHYACKKNCKLDVIEMLLDNGAD 468

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 13/27 (48%), Positives = 21/27 (77%)

Query: 232 EGWTPLHIAIQSRNRDIAKVLLINGAD 258
           +G TPLH+A ++ N ++ K+LL +GAD
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query: 216 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 273
            ++L+    D N  D +G TPLHIA  + +  + +VLL  GAD +   KDGKT L+++
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNV 228
           DG TPLH A + G ++ VKLL+    D+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG-WTPLHIAIQSRNRDIAKVLLINGADKS 260
            PL YA+      + KLLI+Y  DVN    E   TPL+I++        ++LL  GAD +
Sbjct: 72  NPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADIN 131

Query: 261 RKTKDGKTALDMSL--CY 276
            +T D  T ++++L  C 
Sbjct: 132 IQTNDMVTPIELALMICN 149

Length = 300

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 232 EGWTPLHIAIQSRNRDIAKVLLINGAD 258
           +G TPLH+A ++ N ++ K+LL  GAD
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 27/143 (18%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD---- 225
           PL     S   + +++ +  G DI+ ++     PL  A+++GA   +KLLI   VD    
Sbjct: 38  PLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL 97

Query: 226 -------------------VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
                              VN+ D E  T LH AI+  + +  K+L   GAD + +  +G
Sbjct: 98  PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG 157

Query: 267 KTALDMSLCYGRDFKSYDLAKLL 289
              + +++ +      +D+ KLL
Sbjct: 158 CYPIHIAIKH----NFFDIIKLL 176

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV 208
           + ++ + A P++   +T K+ PL    +   I+ +++L+D    +D  D  G TPL  A+
Sbjct: 119 KLLIARGADPDIP--NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAM 176

Query: 209 QVGAMQSVKLLIKYNVDVN-VADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
             G +   K+L+    +++    N     L  AI++   DI ++ +  GAD
Sbjct: 177 AKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 216 VKLLIKYNVDVNVADNEGWTPL-----HIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
           VKL I    +VN  DNE  TPL     +I       DI K+L+ NGAD ++K  DG+T L
Sbjct: 54  VKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113

Length = 489

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 31/65 (47%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA 229
           PL         + + +LL  G+D    D  G T L+YAV  G MQ+VKL +K N  +   
Sbjct: 64  PLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 123

Query: 230 DNEGW 234
              GW
Sbjct: 124 GKTGW 128

Length = 284

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 183 MDMLLDGGLDIDSVDK-DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 241
           + +LL+ G+D+++     G T LH +++  + + +KLL++Y  D+N  ++   TPL  A+
Sbjct: 251 LKLLLEHGVDVNAKSYILGLTALHSSIK--SERKLKLLLEYGADINSLNSYKLTPLSSAV 308

Query: 242 QSR-NRDIAKVLLINGADKSRKTKDGKTAL 270
           +     +I ++L+ N     R   D K + 
Sbjct: 309 KQYLCINIGRILISNICLLKRIKPDIKNSE 338

Length = 477

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 48/189 (25%)

Query: 134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI 193
           E +LK +E +   E                S   + PL     +  +  +  LL  G ++
Sbjct: 14  ETILKYIEYIDHTENYS----------TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNV 63

Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIK------------------YNVDVNVA------ 229
           +  D    TPLH   +      +K +I+                   N +V +       
Sbjct: 64  NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTN 123

Query: 230 --DNEGWTPLHIAIQSRNRD------IAKVLLINGADKSRKTKD-GKTALDMSLCYGRDF 280
              N   T   + I  +++D      I K+LL  GAD + K +  G TAL     Y  + 
Sbjct: 124 RYKNI-QTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALH----YATEN 178

Query: 281 KSYDLAKLL 289
           K   L +LL
Sbjct: 179 KDQRLTELL 187

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGA-MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           L+D G +++S +KD +TPLHYA +    +  +++L+    DVN  + +   PL IA++  
Sbjct: 428 LIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH 487

Query: 245 NRDIAKVLLINGAD 258
              I  +LL  GA+
Sbjct: 488 G--IVNILLHYGAE 499

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNV 228
           DG TPLH A + G ++ VKLL+++  D+N 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 34/126 (26%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--DVNVAD------------- 230
           LLD G++ +    DG +P+  A++    +++KLL+K+    DV   D             
Sbjct: 21  LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80

Query: 231 -------------------NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 271
                               +G TPLH+A   +  DI K+L+  GAD      D  + L 
Sbjct: 81  VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLH 140

Query: 272 MSLCYG 277
           +++  G
Sbjct: 141 LAVMMG 146

Length = 413

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 21/74 (28%), Positives = 38/74 (51%)

Query: 181 RYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 240
           R+++ LL  G   +  D DG  PLH A ++   + V +L+ +  D N  D +  TPL+  
Sbjct: 53  RFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL 112

Query: 241 IQSRNRDIAKVLLI 254
             + +  I ++ L+
Sbjct: 113 SGTDDEVIERINLL 126

Length = 446

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)

Query: 46  LSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLD 105
           L+ T K+   +R    E+++EA+ +    E +D DD    E DDDDDDDE+ +  E+D D
Sbjct: 28  LNDTMKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDED-DEDEDDDD 86

Query: 106 FESDWEEERSG-------IGAAASGDAATTISKYE 133
                +             G A S D +   S+Y 
Sbjct: 87  STLHDDSSADDGNETDNEAGFADSDDESDDGSEYV 121

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPL-----HYAVQVGAMQSVKLLIKYN 223
           + LQ  + S  I  + + ++ G +++ +D + +TPL     +       +  VK+LI+  
Sbjct: 42  KYLQRDSPSTDI--VKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG 99

Query: 224 VDVNVADNEGWTPLHIAIQSR---NRDIAKVLLINGADKSRKTKDGKTALDMSL 274
            D+N  +++G TPL+  + +    N +I   ++ NGAD +   KDG T L + L
Sbjct: 100 ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYL 153

Length = 489

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD 230
           M  LL  GL++DS D  GAT L  A+    +  V+LLI    DV+ A+
Sbjct: 638 MKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 181 RYMDM---LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPL 237
           R  D+   LL+ G ++++ D    TP+HYA     +  +  L+ Y  D+     +  T L
Sbjct: 353 RNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTAL 412

Query: 238 HIAIQSRNRDIA-KVLLINGADKSRKTKDGKTAL 270
           H A+   N  ++ K L+  GA+ + K KD  T L
Sbjct: 413 HFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPL 446

Length = 682

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 17/55 (30%), Positives = 35/55 (63%)

Query: 204 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           L  A +   + ++K L+K  ++V+  D++G T L +A+   + D+ ++L++NGAD
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD 680

Length = 823

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 150 EILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHY--A 207
           E+L++  +PN  +       PL   +     R + MLL  G D ++ DK   TPL+Y   
Sbjct: 57  ELLHRGYSPN--ETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114

Query: 208 VQVGAMQSVKLLIKYNVDVNVA-DNEGWTPLHIAIQSRNRDIAKVLLI 254
                ++ + LL++Y   +N + D EG  PL        R   K++ I
Sbjct: 115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSI 162

Length = 446

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 18/134 (13%)

Query: 173 TLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLH-YAVQVGAMQS-VKLLIKYNVDVNVAD 230
           TL  ++ I  +   L  G+ +   D  G T LH Y ++       +KLL +Y  D+N  D
Sbjct: 290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD 349

Query: 231 NEGWTPLHIAIQSR---------------NRDIAKVLLINGADKSRKTKDGKTALDMSLC 275
           N G T LH  + S                  D+ + L+  GAD +     G T L   +C
Sbjct: 350 NIGNTVLHTYL-SMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYIC 408

Query: 276 YGRDFKSYDLAKLL 289
             +++  YD+   L
Sbjct: 409 TAQNYMYYDIIDCL 422

Length = 764

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 178 MQIRYMDMLLDGGLDIDSVD-KDGATPLHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWT 235
           M+I   ++L++ G DI++ +   G T LH A      +  + L +   V++   + +  T
Sbjct: 74  MKI---ELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHET 130

Query: 236 PLHIAIQSRNRDIAKVLLINGA 257
             HIA + R+R + ++L  NGA
Sbjct: 131 AYHIAYKMRDRRMMEILRANGA 152

Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02874	434	ankyrin repeat protein; Provisional	99.93
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA02874	434	ankyrin repeat protein; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA02878	477	ankyrin repeat protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA03095	471	ankyrin-like protein; Provisional	99.91
PHA02946	446	ankyin-like protein; Provisional	99.91
PHA02989	494	ankyrin repeat protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
PHA02946	446	ankyin-like protein; Provisional	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.9
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA02876	682	ankyrin repeat protein; Provisional	99.89
PHA02798	489	ankyrin-like protein; Provisional	99.89
PHA02876	682	ankyrin repeat protein; Provisional	99.88
KOG0510	929	consensus Ankyrin repeat protein [General function	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA02917	661	ankyrin-like protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
PHA02730	672	ankyrin-like protein; Provisional	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
PHA02917	661	ankyrin-like protein; Provisional	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
KOG0510	929	consensus Ankyrin repeat protein [General function	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.81
PHA02741	169	hypothetical protein; Provisional	99.81
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.8
PHA02730	672	ankyrin-like protein; Provisional	99.79
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.79
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.78
PHA02792	631	ankyrin-like protein; Provisional	99.78
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.77
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.77
PHA02792	631	ankyrin-like protein; Provisional	99.75
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.67
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.65
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.63
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.6
KOG0514	452	consensus Ankyrin repeat protein [General function	99.6
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.59
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.59
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.54
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.51
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.47
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.42
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.4
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.27
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.09
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.08
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.05
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.01
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.99
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.95
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.94
PF13606	30	Ank_3: Ankyrin repeat	98.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.92
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.88
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.84
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.81
KOG0522	560	consensus Ankyrin repeat protein [General function	98.8
PF13606	30	Ank_3: Ankyrin repeat	98.8
KOG0522	560	consensus Ankyrin repeat protein [General function	98.76
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.75
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.73
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.7
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.61
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.49
KOG2384	223	consensus Major histocompatibility complex protein	98.4
KOG0511	516	consensus Ankyrin repeat protein [General function	98.4
KOG2384	223	consensus Major histocompatibility complex protein	98.28
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.27
KOG0511	516	consensus Ankyrin repeat protein [General function	98.26
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.67
KOG2505	591	consensus Ankyrin repeat protein [General function	97.53
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.29
KOG2505	591	consensus Ankyrin repeat protein [General function	97.1
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.01
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.42
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.63
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.1
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.43
KOG1161	310	consensus Protein involved in vacuolar polyphospha	88.56
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	84.96

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.7e-30  Score=204.00  Aligned_cols=154  Identities=25%  Similarity=0.314  Sum_probs=138.0

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHhC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ..+|+.++.-+..+.+.-|+. ..++++...|..||||||+||..|+.++|+.|+.. |+++|..+..|+||||||+..|
T Consensus        39 Rt~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~  117 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKG  117 (226)
T ss_pred             CceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCC
Confidence            345677777788888888885 44555666799999999999999999999999997 9999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      ..+|+++|++.|+.++++|..|.||||-|+..|.++++++|+..|+.+|..|+.|+||||.|.+-|+    .++..+|-+
T Consensus       118 r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~----~d~a~lLV~  193 (226)
T KOG4412|consen  118 RLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGH----PDVAVLLVR  193 (226)
T ss_pred             hhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccC----chHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988887    566666543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.2e-30  Score=202.05  Aligned_cols=153  Identities=27%  Similarity=0.296  Sum_probs=135.8

Q ss_pred             HHHHHhcChHHHHHHHhcCC-CCCcccCCCCCChHHHHHHHcCCHHHHHHHH-hCCCCCCccCCCCChHHHHHHHhCCHH
Q 022566          137 LKEVEQLLEPEEREILNQNA-TPNLGKISTAKWRPLQTLTLSMQIRYMDMLL-DGGLDIDSVDKDGATPLHYAVQVGAMQ  214 (295)
Q Consensus       137 ~~ai~~~~~~~~~~lL~~g~-~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll-~~g~d~~~~d~~g~tpLh~A~~~g~~~  214 (295)
                      ...+.......+.++++... ..+. ..|.+|+|||||||..|+.+++.+|+ +.++.+|.+|..||||||+|+..|+.+
T Consensus         8 ~~~~~~~~~~kveel~~s~~kSL~~-r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~e   86 (226)
T KOG4412|consen    8 KAICENCEEFKVEELIQSDPKSLNA-RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDE   86 (226)
T ss_pred             HHHHhhchHHHHHHHHhcChhhhhc-cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHH
Confidence            44455555666777776655 2233 23558999999999999999999999 578999999999999999999999999


Q ss_pred             HHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          215 SVKLLIKY-NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       215 ~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      +|+.|+.+ |+++|..++.|.||||||+.+|+.+|+++|+++|+.++++|..|.||||-|+.-|+    +++++||..+.
T Consensus        87 vVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGk----lkvie~Li~~~  162 (226)
T KOG4412|consen   87 VVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGK----LKVIEYLISQG  162 (226)
T ss_pred             HHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccc----hhhHHHHHhcC
Confidence            99999999 99999999999999999999999999999999999999999999999999999997    99999998765


Q ss_pred             C
Q 022566          294 V  294 (295)
Q Consensus       294 ~  294 (295)
                      +
T Consensus       163 a  163 (226)
T KOG4412|consen  163 A  163 (226)
T ss_pred             C
Confidence            3

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.1e-26  Score=202.08  Aligned_cols=154  Identities=12%  Similarity=0.045  Sum_probs=139.7

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCC-hHHHHHHHhC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGA-TPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~-tpLh~A~~~g  211 (295)
                      ..+|+.|+..+..+.++.|+..|++++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadvn~--~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDDSQ--FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence            4689999999999999999999988776  488999999999999999999999999999999988885 8999999999


Q ss_pred             CHHHHHHHHhCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHhcCCCCChHHHHHHh
Q 022566          212 AMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA-LDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~Tp-L~~A~~~g~~~~~~~iv~~L  289 (295)
                      +.+++++|+++|.+.  .| ..|.||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..|+    .+++++|
T Consensus       140 ~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~----~e~v~lL  213 (284)
T PHA02791        140 DVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD----LEMLQAL  213 (284)
T ss_pred             CHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCC----HHHHHHH
Confidence            999999999987643  23 358999999999999999999999999999999999987 999999997    9999999


Q ss_pred             hhcCC
Q 022566          290 KILPV  294 (295)
Q Consensus       290 ~~lp~  294 (295)
                      ....+
T Consensus       214 l~~Ga  218 (284)
T PHA02791        214 FKYDI  218 (284)
T ss_pred             HHCCC
Confidence            87765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=3e-26  Score=212.21  Aligned_cols=157  Identities=24%  Similarity=0.343  Sum_probs=141.4

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhc-CCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCChHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQ-NATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD-KDGATPLHYA  207 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~-g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d-~~g~tpLh~A  207 (295)
                      +.....++.|+..|..+.++.+++. |.+++.  .|.+|.|+||+|+.+++++++++|+++|+++|..+ .-+.||||+|
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~--~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESEGESVNN--PDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWA  119 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhcCcCCCC--CCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHH
Confidence            3345668899999999999999998 666654  47899999999999999999999999999999998 5589999999


Q ss_pred             HHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHH
Q 022566          208 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK  287 (295)
Q Consensus       208 ~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~  287 (295)
                      +++|++.+|.+|+++||+++.+|..|.||||.|++.|+.-+|-+|+.+|++++.+|.+|+||||+|+..|.   ... +.
T Consensus       120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~---~~~-v~  195 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGF---ALF-VR  195 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcc---cHH-HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997   344 55


Q ss_pred             Hhhhc
Q 022566          288 LLKIL  292 (295)
Q Consensus       288 ~L~~l  292 (295)
                      +|+.+
T Consensus       196 ~LL~f  200 (600)
T KOG0509|consen  196 RLLKF  200 (600)
T ss_pred             HHHHh
Confidence            44443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=1e-25  Score=198.81  Aligned_cols=153  Identities=24%  Similarity=0.258  Sum_probs=139.6

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...+|+.|+..+..+.++.|+..|++++..    .++||||+|+..|+.+++++|+..|++++.+|..|+||||+|+..|
T Consensus        30 G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~----d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g  105 (284)
T PHA02791         30 GHSALYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSG  105 (284)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCcCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            456899999999999999999999887753    3689999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCC-hHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGW-TPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~-TpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      +.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++++.  .| ..|.||||+|+..|+    .+++++|
T Consensus       106 ~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~----~eiv~lL  179 (284)
T PHA02791        106 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGH----VDMMILL  179 (284)
T ss_pred             CHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCC----HHHHHHH
Confidence            99999999999999999999885 8999999999999999999998654  23 358999999999998    9999999


Q ss_pred             hhcCC
Q 022566          290 KILPV  294 (295)
Q Consensus       290 ~~lp~  294 (295)
                      ....+
T Consensus       180 L~~gA  184 (284)
T PHA02791        180 LDYMT  184 (284)
T ss_pred             HHCCC
Confidence            87654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=209.00  Aligned_cols=156  Identities=21%  Similarity=0.243  Sum_probs=94.6

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCC-ccCCCCChHHHHHHH
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDID-SVDKDGATPLHYAVQ  209 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~-~~d~~g~tpLh~A~~  209 (295)
                      ....+|+.|+..+..+.++.|+..|+.++..  +..+.||||.|+..|+.+++++|++.|.+++ ..+..|.||||+|+.
T Consensus        34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  111 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI  111 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence            4556777777777888888888777766543  3334444444444444444444444444332 223445666666666


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          210 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|
T Consensus       112 ~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~----~eiv~~L  187 (413)
T PHA02875        112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD----IAICKML  187 (413)
T ss_pred             hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666666664    5666666


Q ss_pred             hhc
Q 022566          290 KIL  292 (295)
Q Consensus       290 ~~l  292 (295)
                      ...
T Consensus       188 l~~  190 (413)
T PHA02875        188 LDS  190 (413)
T ss_pred             HhC
Confidence            543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.7e-25  Score=187.18  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=129.5

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcC--CHHHHHHHHhCCCCCCccC-CCCChHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM--QIRYMDMLLDGGLDIDSVD-KDGATPLHY  206 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~d~~~~d-~~g~tpLh~  206 (295)
                      +.+..+++.|+..++.+.++.|+...     ...+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~   93 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHH   93 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHH
Confidence            45677899999999999999988642     234778899999998754  8899999999999999887 479999998


Q ss_pred             HHHh---CCHHHHHHHHhCCCCCcccCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HhcCCCC
Q 022566          207 AVQV---GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ--SRNRDIAKVLLINGADKSRKTKDGKTALDMS-LCYGRDF  280 (295)
Q Consensus       207 A~~~---g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~--~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A-~~~g~~~  280 (295)
                      |+..   ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||.+ +..++  
T Consensus        94 a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~--  171 (209)
T PHA02859         94 YLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD--  171 (209)
T ss_pred             HHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC--
Confidence            8764   47899999999999999999999999999876  4688999999999999999999999999964 44554  


Q ss_pred             ChHHHHHHhhhcC
Q 022566          281 KSYDLAKLLKILP  293 (295)
Q Consensus       281 ~~~~iv~~L~~lp  293 (295)
                        .+++++|.+..
T Consensus       172 --~~iv~~Ll~~G  182 (209)
T PHA02859        172 --KKIFDFLTSLG  182 (209)
T ss_pred             --HHHHHHHHHcC
Confidence              88999887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3e-25  Score=210.75  Aligned_cols=157  Identities=31%  Similarity=0.431  Sum_probs=137.0

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCH--------------------------------
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQI--------------------------------  180 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~--------------------------------  180 (295)
                      ..+|+.|+..+..+.++.|+..|++++.  .+..|+||||+||..|+.                                
T Consensus        38 ~tPLh~A~~~g~~e~vk~Ll~~gadvn~--~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         38 FIPLHQAVEARNLDVVKSLLTRGHNVNQ--PDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            3478999999999999999999988775  488899999999876543                                


Q ss_pred             --------------------------------HHHHHHHhCCCCCCccCCC-CChHHHHHHHhCCHHHHHHHHhCCCCCc
Q 022566          181 --------------------------------RYMDMLLDGGLDIDSVDKD-GATPLHYAVQVGAMQSVKLLIKYNVDVN  227 (295)
Q Consensus       181 --------------------------------~~v~~Ll~~g~d~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~in  227 (295)
                                                      +++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n  195 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN  195 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC
Confidence                                            2667777888899988888 9999999999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       228 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      .+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+.   ..+++++|.+..+
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~---~~~iv~~Ll~~ga  259 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK---DYDILKLLLEHGV  259 (477)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcC---CHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999997643   3899998876543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=5.2e-25  Score=205.39  Aligned_cols=158  Identities=27%  Similarity=0.357  Sum_probs=146.1

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...+++.|+..+..+.++.|+..|...+. ..+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus        68 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~  146 (413)
T PHA02875         68 IESELHDAVEEGDVKAVEELLDLGKFADD-VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMG  146 (413)
T ss_pred             cccHHHHHHHCCCHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence            45689999999999999999999876543 23667999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHhcCCCCChHHHHHHhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK-TALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~-TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+    .+++++|.
T Consensus       147 ~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~----~~iv~~Ll  222 (413)
T PHA02875        147 DIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK----IDIVRLFI  222 (413)
T ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCC----HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998875 88999999997    89999997


Q ss_pred             hcCC
Q 022566          291 ILPV  294 (295)
Q Consensus       291 ~lp~  294 (295)
                      ...+
T Consensus       223 ~~ga  226 (413)
T PHA02875        223 KRGA  226 (413)
T ss_pred             HCCc
Confidence            7654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1e-24  Score=204.77  Aligned_cols=155  Identities=32%  Similarity=0.440  Sum_probs=97.1

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCC---------------------
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL---------------------  191 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~---------------------  191 (295)
                      ..+++.|+..+..+.++.|+..|++++.  .+..|.||||.|+..|+.+++++|+++|+                     
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~--~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~  113 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINH--INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC  113 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence            3456666666666666666666665553  25556666666666666666666655443                     


Q ss_pred             --CCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Q 022566          192 --DIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA  269 (295)
Q Consensus       192 --d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~Tp  269 (295)
                        +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tp  193 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESP  193 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence              344455566666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCCCCChHHHHHHhhhcC
Q 022566          270 LDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       270 L~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      ||+|+..|+    .+++++|...+
T Consensus       194 L~~A~~~g~----~~iv~~Ll~~g  213 (434)
T PHA02874        194 LHNAAEYGD----YACIKLLIDHG  213 (434)
T ss_pred             HHHHHHcCC----HHHHHHHHhCC
Confidence            666666665    66666665443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=3.9e-25  Score=204.82  Aligned_cols=156  Identities=28%  Similarity=0.258  Sum_probs=143.7

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      .-...++-|+-++..+.++.|+.+|+++|... ..-+.||||+|+++|++.+|.+|+++|+|++.+|..|.+|||+|+..
T Consensus        77 ~g~tlLHWAAiNNrl~v~r~li~~gadvn~~g-G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~  155 (600)
T KOG0509|consen   77 EGVTLLHWAAINNRLDVARYLISHGADVNAIG-GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQF  155 (600)
T ss_pred             CCccceeHHHHcCcHHHHHHHHHcCCCccccC-CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHh
Confidence            34456888999999999999999999999763 36688999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      |+..+|-+|+.+|+++|.+|..|+||||+|+.+|+...+..|+..|+.+..+| ..|.||||+|+..|+    +.++.+|
T Consensus       156 ~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN----~~~v~Ll  231 (600)
T KOG0509|consen  156 GHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGN----LTAVKLL  231 (600)
T ss_pred             CchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCC----cceEehh
Confidence            99999999999999999999999999999999999988999999999999998 899999999999997    6777755


Q ss_pred             hh
Q 022566          290 KI  291 (295)
Q Consensus       290 ~~  291 (295)
                      ++
T Consensus       232 ~~  233 (600)
T KOG0509|consen  232 LE  233 (600)
T ss_pred             hh
Confidence            43

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3e-24  Score=203.90  Aligned_cols=157  Identities=28%  Similarity=0.349  Sum_probs=138.6

Q ss_pred             hcHHHHHHHHhc--ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCC------ChH
Q 022566          132 YEEDLLKEVEQL--LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDG------ATP  203 (295)
Q Consensus       132 ~~~~l~~ai~~~--~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g------~tp  203 (295)
                      ...+++.|+..+  ..+.++.|+..|++++..  +..|.||||+|+..|+.+++++|+++|++++..+..|      .||
T Consensus       141 g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~--d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~  218 (480)
T PHA03100        141 GENLLHLYLESNKIDLKILKLLIDKGVDINAK--NRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETP  218 (480)
T ss_pred             CCcHHHHHHHcCCChHHHHHHHHHCCCCcccc--cCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhH
Confidence            456788888888  888889999988887764  6688899999999999999999999999998888888      889


Q ss_pred             HHHHHHhCC--HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Q 022566          204 LHYAVQVGA--MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK  281 (295)
Q Consensus       204 Lh~A~~~g~--~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~  281 (295)
                      ||+|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++   
T Consensus       219 l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~---  295 (480)
T PHA03100        219 LHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN---  295 (480)
T ss_pred             HHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCC---
Confidence            999999998  999999999999999999999999999999999999999999999999999999999999999886   


Q ss_pred             hHHHHHHhhhcCC
Q 022566          282 SYDLAKLLKILPV  294 (295)
Q Consensus       282 ~~~iv~~L~~lp~  294 (295)
                       .+++++|.+..+
T Consensus       296 -~~iv~~Ll~~g~  307 (480)
T PHA03100        296 -KEIFKLLLNNGP  307 (480)
T ss_pred             -HHHHHHHHhcCC
Confidence             889998876543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=5.3e-24  Score=180.72  Aligned_cols=145  Identities=20%  Similarity=0.228  Sum_probs=128.8

Q ss_pred             hcHHHHHHHHhc--ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCccCCCCChHHHH
Q 022566          132 YEEDLLKEVEQL--LEPEEREILNQNATPNLGKISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDIDSVDKDGATPLHY  206 (295)
Q Consensus       132 ~~~~l~~ai~~~--~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~  206 (295)
                      ...+++.++..+  ..+.++.|++.|++++... +..|+||||+|+..   ++.+++++|+++|++++.+|..|.||||+
T Consensus        51 g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~-~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~  129 (209)
T PHA02859         51 YETPIFSCLEKDKVNVEILKFLIENGADVNFKT-RDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHM  129 (209)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccC-CCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            345777787754  7899999999999988641 35799999998764   47999999999999999999999999999


Q ss_pred             HHH--hCCHHHHHHHHhCCCCCcccCCCCChHHHH-HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcC
Q 022566          207 AVQ--VGAMQSVKLLIKYNVDVNVADNEGWTPLHI-AIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG  277 (295)
Q Consensus       207 A~~--~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~-A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g  277 (295)
                      |+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++.+|..|.|||++|...+
T Consensus       130 a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        130 YMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            986  468999999999999999999999999996 56788999999999999999999999999999998775

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.92  E-value=1.8e-23  Score=196.35  Aligned_cols=156  Identities=25%  Similarity=0.309  Sum_probs=140.5

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      ..+..|+..|+.+.++.++..+... +...+..|.||||.|+..|+.++|++|++.|++++..+..|.||||+|+..|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~-~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~   81 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNC-INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAH   81 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4688999999999999999865432 223467889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCC-----------------------CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 022566          214 QSVKLLIKYNV-----------------------DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL  270 (295)
Q Consensus       214 ~~v~~Ll~~ga-----------------------~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL  270 (295)
                      +++++|+++|+                       +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        82 ~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpL  161 (434)
T PHA02874         82 DIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPI  161 (434)
T ss_pred             HHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHH
Confidence            99999987764                       4667888999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCChHHHHHHhhhcCC
Q 022566          271 DMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       271 ~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      |+|+..|+    .+++++|.+.+.
T Consensus       162 h~A~~~~~----~~iv~~Ll~~g~  181 (434)
T PHA02874        162 HIAIKHNF----FDIIKLLLEKGA  181 (434)
T ss_pred             HHHHHCCc----HHHHHHHHHCCC
Confidence            99999997    999999977543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-24  Score=194.69  Aligned_cols=151  Identities=23%  Similarity=0.278  Sum_probs=140.2

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+++.|...|..+.|+.|+..|+++|-.  .....|||..||.-|+.++|++|+++|+|++..|..|.|.||+||..|+.
T Consensus        86 ppLWaAsaAGHl~vVk~L~~~ga~VN~t--T~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~  163 (615)
T KOG0508|consen   86 PPLWAASAAGHLEVVKLLLRRGASVNDT--TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHV  163 (615)
T ss_pred             chhhHHhccCcHHHHHHHHHhcCccccc--cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCch
Confidence            4588999999999999999999888754  34445999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +|+++|++.|+++|.++..|+|+||.|+..|+++++++|+.+|+.+.. |..|.|||..|...|+    .+||++|..
T Consensus       164 ~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~----~~iVe~L~~  236 (615)
T KOG0508|consen  164 DIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGH----TDIVERLLQ  236 (615)
T ss_pred             HHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcc----hHHHHHHhc
Confidence            999999999999999999999999999999999999999999998875 5559999999999998    899999874

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=7.3e-24  Score=201.26  Aligned_cols=157  Identities=25%  Similarity=0.344  Sum_probs=147.0

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHH-----HHHcCCHHHHHHHHhCCCCCCccCCCCChHHHH
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQT-----LTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHY  206 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~-----A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~  206 (295)
                      ...+++.|+..+..+.++.|+..|++++..  +..+.||||+     |+..++.+++++|++.|++++..+..|.||||+
T Consensus        35 ~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~--~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~  112 (480)
T PHA03100         35 PVLPLYLAKEARNIDVVKILLDNGADINSS--TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY  112 (480)
T ss_pred             cchhhhhhhccCCHHHHHHHHHcCCCCCCc--cccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhH
Confidence            346789999999999999999999988754  7778999999     999999999999999999999999999999999


Q ss_pred             HH--HhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCh
Q 022566          207 AV--QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR--NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS  282 (295)
Q Consensus       207 A~--~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~  282 (295)
                      |+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++.++..|.||||+|+..|+    
T Consensus       113 A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~----  188 (480)
T PHA03100        113 AISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGN----  188 (480)
T ss_pred             HHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCC----
Confidence            99  999999999999999999999999999999999999  9999999999999999999999999999999996    


Q ss_pred             HHHHHHhhhcCC
Q 022566          283 YDLAKLLKILPV  294 (295)
Q Consensus       283 ~~iv~~L~~lp~  294 (295)
                      .+++++|.+..+
T Consensus       189 ~~iv~~Ll~~ga  200 (480)
T PHA03100        189 IDVIKFLLDNGA  200 (480)
T ss_pred             HHHHHHHHHcCC
Confidence            899999977543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=9.5e-24  Score=200.48  Aligned_cols=151  Identities=26%  Similarity=0.289  Sum_probs=133.0

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh-
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV-  210 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~-  210 (295)
                      ...+|+.|+..+..+.++.|+..|++++.  .+..|+||||.|+..|+.+++++|++.|++++.+|..|.||||+|+.. 
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~gad~n~--~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~  245 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYGANVNI--PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYC  245 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhc
Confidence            46689999999999999999999988775  488899999999999999999999999999999999999999999975 


Q ss_pred             CCHHHHHHHHhCCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          211 GAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      ++.+++++|+++|++++.++. .|+||||+|  .++.+++++|+++|++++..|..|.||||+|+..+.   ..++.++|
T Consensus       246 ~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~---~~~~~~~l  320 (477)
T PHA02878        246 KDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYL---CINIGRIL  320 (477)
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcC---ccchHHHH
Confidence            689999999999999998886 799999999  577899999999999999999999999999997553   24455544

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=7.9e-24  Score=173.84  Aligned_cols=128  Identities=18%  Similarity=0.258  Sum_probs=117.6

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHh------CCCCCCccCCCCChHHHHHHHhCC----HHHHHHHHhCCCCCcccCC
Q 022566          162 KISTAKWRPLQTLTLSMQIRYMDMLLD------GGLDIDSVDKDGATPLHYAVQVGA----MQSVKLLIKYNVDVNVADN  231 (295)
Q Consensus       162 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~------~g~d~~~~d~~g~tpLh~A~~~g~----~~~v~~Ll~~ga~in~~d~  231 (295)
                      ..+..|.||||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|+.+|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            347789999999999999999999854      368899999999999999999998    5899999999999999985


Q ss_pred             -CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          232 -EGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       232 -~g~TpLh~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                       .|+||||+|+..++.+++++|+. .|++++.+|..|.||||+|+..++    .+++++|..+.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~----~~iv~~L~~~~  155 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNED----VAMMQILREIV  155 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC----HHHHHHHHHHH
Confidence             89999999999999999999997 599999999999999999999997    89999997653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.5e-23  Score=191.05  Aligned_cols=160  Identities=19%  Similarity=0.122  Sum_probs=140.7

Q ss_pred             hhcHHHHHHHH--hcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC------CCCCh
Q 022566          131 KYEEDLLKEVE--QLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD------KDGAT  202 (295)
Q Consensus       131 ~~~~~l~~ai~--~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d------~~g~t  202 (295)
                      .....|+.++.  .+..+.++-|+.+|++++..    .+.||||.|+..++.+++++|+++|++.....      ..+.|
T Consensus       115 ~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~----~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t  190 (437)
T PHA02795        115 SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI----ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYT  190 (437)
T ss_pred             cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC----CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccc
Confidence            35667888888  78999999999999999863    34799999999999999999999998543222      34789


Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC---
Q 022566          203 PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD---  279 (295)
Q Consensus       203 pLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~---  279 (295)
                      ++|.|+..++.+++++|+.+|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.   
T Consensus       191 ~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~  270 (437)
T PHA02795        191 RGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIAR  270 (437)
T ss_pred             hhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999841   


Q ss_pred             -CChHHHHHHhhhcCC
Q 022566          280 -FKSYDLAKLLKILPV  294 (295)
Q Consensus       280 -~~~~~iv~~L~~lp~  294 (295)
                       ....+|+++|..-|+
T Consensus       271 ~~~~~eIvelLL~~ga  286 (437)
T PHA02795        271 RETHLKILEILLREPL  286 (437)
T ss_pred             cccHHHHHHHHHhCCC
Confidence             124699999987654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=2.6e-23  Score=208.93  Aligned_cols=155  Identities=18%  Similarity=0.216  Sum_probs=143.3

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ....++.|+..++...++.++..|++++.  .|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~--~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDI--GDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            34678999999999999999999999886  4889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +.+++++|+..++..+.  ..|.+|||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..|+    .+++++|.+
T Consensus       603 ~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~----~~iv~~Ll~  676 (823)
T PLN03192        603 HHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH----VDMVRLLIM  676 (823)
T ss_pred             CHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc----HHHHHHHHH
Confidence            99999999998876543  457799999999999999999999999999999999999999999997    999999977


Q ss_pred             cCC
Q 022566          292 LPV  294 (295)
Q Consensus       292 lp~  294 (295)
                      ..+
T Consensus       677 ~GA  679 (823)
T PLN03192        677 NGA  679 (823)
T ss_pred             cCC
Confidence            543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.2e-23  Score=196.32  Aligned_cols=149  Identities=29%  Similarity=0.381  Sum_probs=88.5

Q ss_pred             HHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcC---CHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC-CHH
Q 022566          139 EVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM---QIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG-AMQ  214 (295)
Q Consensus       139 ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g---~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g-~~~  214 (295)
                      +......+.++.|+..|++++..  +..|.||||+|+..+   +.+++++|++.|++++.++..|.||||+|+..| ..+
T Consensus        21 ~~~~~~~~~v~~Ll~~ga~vn~~--~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         21 NASNVTVEEVRRLLAAGADVNFR--GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             cCCCCCHHHHHHHHHcCCCcccC--CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHH
Confidence            33445555666666666555542  555666666666655   566666666666666666666666666666666 366


Q ss_pred             HHHHHHhCCCCCcccCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          215 SVKLLIKYNVDVNVADNEGWTPLHIAI--QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       215 ~v~~Ll~~ga~in~~d~~g~TpLh~A~--~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      ++++|+++|++++.++..|+||||+|+  ..++.+++++|+++|++++.+|..|.||||+|+..+.  ...+++++|..
T Consensus        99 iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~--~~~~iv~~Ll~  175 (471)
T PHA03095         99 VIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN--ANVELLRLLID  175 (471)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC--CCHHHHHHHHH
Confidence            666666666666666666666666666  3345566666666666666666666666666655442  13555555544

>PHA02946 ankyin-like protein; Provisional

Probab=99.91  E-value=5.4e-23  Score=193.12  Aligned_cols=156  Identities=21%  Similarity=0.244  Sum_probs=115.6

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcC--CHHHHHHHHhCCCCCCc-cCCCCChHHHHH
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM--QIRYMDMLLDGGLDIDS-VDKDGATPLHYA  207 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~d~~~-~d~~g~tpLh~A  207 (295)
                      ....+|+.|+..+..+.++.||..|++++.  +|..|+||||+|+..+  ..+++++|+++|++++. .+..|.|||| |
T Consensus        71 ~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~--~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-a  147 (446)
T PHA02946         71 DGNYPLHIASKINNNRIVAMLLTHGADPNA--CDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-A  147 (446)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCC--CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-H
Confidence            344567777777777777777777766664  3666777777776654  36677777777777764 4666777776 5


Q ss_pred             HHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHH
Q 022566          208 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR--NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL  285 (295)
Q Consensus       208 ~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~i  285 (295)
                      +..++.+++++|++.|++++.+|..|+||||+|+..+  +.+++++|+++|++++.+|..|.||||+|+..|..  ..++
T Consensus       148 a~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~--~~~i  225 (446)
T PHA02946        148 CTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVK--NVDI  225 (446)
T ss_pred             HHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCC--cHHH
Confidence            5567777777777778888888888889998887754  46889999999999999999999999999987631  3788


Q ss_pred             HHHhhh
Q 022566          286 AKLLKI  291 (295)
Q Consensus       286 v~~L~~  291 (295)
                      +++|..
T Consensus       226 v~lLl~  231 (446)
T PHA02946        226 INLLLP  231 (446)
T ss_pred             HHHHHc
Confidence            888763

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=6.2e-23  Score=195.68  Aligned_cols=155  Identities=21%  Similarity=0.290  Sum_probs=130.9

Q ss_pred             cHHHHHHHHh---cChHHHHHHHhcCCCC-CcccCCCCCChHHHHHHHc--CCHHHHHHHHhCCCCCCc-cCCCCChHHH
Q 022566          133 EEDLLKEVEQ---LLEPEEREILNQNATP-NLGKISTAKWRPLQTLTLS--MQIRYMDMLLDGGLDIDS-VDKDGATPLH  205 (295)
Q Consensus       133 ~~~l~~ai~~---~~~~~~~~lL~~g~~~-~~~~~d~~g~t~Lh~A~~~--g~~~~v~~Ll~~g~d~~~-~d~~g~tpLh  205 (295)
                      ..+++.|+..   +..+.++.|++.|+++ +.  .+..|+||||+|+..  ++.+++++|+++|++++. .+..|.||||
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~--~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~  186 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDV--KNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMN  186 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccc--cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHH
Confidence            4456666544   5678889999999988 44  478899999998754  588999999999999988 5778999999


Q ss_pred             HHHHhC----CHHHHHHHHhCCCCCcc--------------------------------------cCCCCChHHHHHHHc
Q 022566          206 YAVQVG----AMQSVKLLIKYNVDVNV--------------------------------------ADNEGWTPLHIAIQS  243 (295)
Q Consensus       206 ~A~~~g----~~~~v~~Ll~~ga~in~--------------------------------------~d~~g~TpLh~A~~~  243 (295)
                      +|+..+    +.+++++|+++|++++.                                      +|..|+||||+|+..
T Consensus       187 ~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~  266 (494)
T PHA02989        187 IYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV  266 (494)
T ss_pred             HHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh
Confidence            987754    88999999988877653                                      455699999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+..
T Consensus       267 ~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~----~~iv~~LL~~~  312 (494)
T PHA02989        267 DNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN----IDMLNRILQLK  312 (494)
T ss_pred             cCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHHHhcC
Confidence            99999999999999999999999999999999997    89998886543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=4.8e-23  Score=200.84  Aligned_cols=160  Identities=21%  Similarity=0.170  Sum_probs=135.0

Q ss_pred             cHHHHHHHHh--cChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCC--HHHHHHHHhCCCCCCccCCCCChHHHHH-
Q 022566          133 EEDLLKEVEQ--LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ--IRYMDMLLDGGLDIDSVDKDGATPLHYA-  207 (295)
Q Consensus       133 ~~~l~~ai~~--~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~--~~~v~~Ll~~g~d~~~~d~~g~tpLh~A-  207 (295)
                      ..+|+.++..  +..+.++.|++.|++++..  +..|+||||+|+..|+  .++|++|+++|++++.++..|+||||+| 
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~GADVN~k--D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai  255 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNGVNVNLQ--NNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYI  255 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456655543  4578999999999988764  8899999999999995  5899999999999999999999999975 


Q ss_pred             ------------------------------------HHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHH--cCCHHHH
Q 022566          208 ------------------------------------VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ--SRNRDIA  249 (295)
Q Consensus       208 ------------------------------------~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~--~g~~~iv  249 (295)
                                                          +..|+.+++++|++.|++++.+|..|+||||+|+.  .++.+++
T Consensus       256 ~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIV  335 (764)
T PHA02716        256 INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDII  335 (764)
T ss_pred             HhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHH
Confidence                                                34578899999999999999999999999999875  4689999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHhcC----------CCCChHHHHHHhhhcCC
Q 022566          250 KVLLINGADKSRKTKDGKTALDMSLCYG----------RDFKSYDLAKLLKILPV  294 (295)
Q Consensus       250 ~~Ll~~gad~~~~d~~g~TpL~~A~~~g----------~~~~~~~iv~~L~~lp~  294 (295)
                      ++|+++|++++.+|..|.||||+|+...          ......+++++|.+..+
T Consensus       336 klLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA  390 (764)
T PHA02716        336 KLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA  390 (764)
T ss_pred             HHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence            9999999999999999999999987521          01124899999987654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=4.4e-24  Score=191.21  Aligned_cols=155  Identities=27%  Similarity=0.334  Sum_probs=141.0

Q ss_pred             HHHHHHHHhcChHHHHHHHhc-CCCC------CcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHH
Q 022566          134 EDLLKEVEQLLEPEEREILNQ-NATP------NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHY  206 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~-g~~~------~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~  206 (295)
                      .+++-+++.|....++.|+.+ ++++      .+......|-+||..|+..|++++|+.|+.+|+++|.......|||--
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLra  123 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRA  123 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHH
Confidence            456777889999999999883 3433      333345678899999999999999999999999999999889999999


Q ss_pred             HHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHH
Q 022566          207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA  286 (295)
Q Consensus       207 A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv  286 (295)
                      ||.-|+.+++++|+++|+|+++.|+.|.|.||+||.+|+.+|+++|++.|||+|.++..|+|+||.|+..|+    ++|+
T Consensus       124 ACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~----vdiv  199 (615)
T KOG0508|consen  124 ACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGS----VDIV  199 (615)
T ss_pred             HHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhccc----HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997    9999


Q ss_pred             HHhhhc
Q 022566          287 KLLKIL  292 (295)
Q Consensus       287 ~~L~~l  292 (295)
                      ++|...
T Consensus       200 q~Ll~~  205 (615)
T KOG0508|consen  200 QLLLKH  205 (615)
T ss_pred             HHHHhC
Confidence            999653

>PHA02946 ankyin-like protein; Provisional

Probab=99.90  E-value=8.8e-23  Score=191.71  Aligned_cols=156  Identities=20%  Similarity=0.233  Sum_probs=130.0

Q ss_pred             hhcHHHHHHHHhc--ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHH
Q 022566          131 KYEEDLLKEVEQL--LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV  208 (295)
Q Consensus       131 ~~~~~l~~ai~~~--~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~  208 (295)
                      ....+|+.|+..+  ..+.++.|+..|++++.. .+..|.|||| |+..++.+++++|++.|++++.+|..|+||||+|+
T Consensus       104 ~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~-~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~  181 (446)
T PHA02946        104 QHKTPLYYLSGTDDEVIERINLLVQYGAKINNS-VDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHL  181 (446)
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc-cCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHH
Confidence            3455677666544  367788889999888742 4778999997 66678999999999999999999999999999988


Q ss_pred             HhC--CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHH
Q 022566          209 QVG--AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR--NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD  284 (295)
Q Consensus       209 ~~g--~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~  284 (295)
                      ..+  +.+++++|+++|++++.+|..|+||||+|+..|  +.+++++|+. |++++.+|..|.||||+|+..++   ..+
T Consensus       182 ~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~---~~~  257 (446)
T PHA02946        182 MSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLS---PAH  257 (446)
T ss_pred             HhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCC---hHH
Confidence            755  468999999999999999999999999999876  7889999885 89999999999999999999876   357


Q ss_pred             HHHHhhhc
Q 022566          285 LAKLLKIL  292 (295)
Q Consensus       285 iv~~L~~l  292 (295)
                      ++++|...
T Consensus       258 ~~~~Ll~~  265 (446)
T PHA02946        258 LINKLLST  265 (446)
T ss_pred             HHHHHHhC
Confidence            88887654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=192.67  Aligned_cols=154  Identities=21%  Similarity=0.175  Sum_probs=136.1

Q ss_pred             cHHHHHHHHhc--ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHc--CCHHHHHHHHhCCCCCCccCCCCChHHHHHH
Q 022566          133 EEDLLKEVEQL--LEPEEREILNQNATPNLGKISTAKWRPLQTLTLS--MQIRYMDMLLDGGLDIDSVDKDGATPLHYAV  208 (295)
Q Consensus       133 ~~~l~~ai~~~--~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~--g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~  208 (295)
                      ..+++.++..+  ..+.++.|+..|++++..  +..|+||||+++..  ++.++++.|++.|++++.+|..|.||||+|+
T Consensus       153 ~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~--d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        153 MTPLAVLLKSRNANVELLRLLIDAGADVYAV--DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA  230 (471)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            44555556544  567888888888887765  88899999998865  6789999999999999999999999999999


Q ss_pred             HhCCH--HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHH
Q 022566          209 QVGAM--QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA  286 (295)
Q Consensus       209 ~~g~~--~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv  286 (295)
                      ..|+.  .+++.|+..|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++
T Consensus       231 ~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~----~~~v  306 (471)
T PHA03095        231 TGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNN----GRAV  306 (471)
T ss_pred             hcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCC----HHHH
Confidence            99875  67889999999999999999999999999999999999999999999999999999999999997    8999


Q ss_pred             HHhhhc
Q 022566          287 KLLKIL  292 (295)
Q Consensus       287 ~~L~~l  292 (295)
                      ++|...
T Consensus       307 ~~LL~~  312 (471)
T PHA03095        307 RAALAK  312 (471)
T ss_pred             HHHHHh
Confidence            988654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.90  E-value=3.8e-23  Score=163.12  Aligned_cols=156  Identities=23%  Similarity=0.289  Sum_probs=136.7

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      ...+.++.|++.+-...|+.||...++. ++.+|.+|+||||.|+++|+.+||+.|+..|++++.+...|+||||-||.-
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~-vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANH-VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhcccc-ccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcc
Confidence            4456788999999999999999887764 456799999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC-HHHHHHHH-HcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHH
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN-RDIAKVLL-INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK  287 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~-~~iv~~Ll-~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~  287 (295)
                      .+.+++.+|+.+|+++|+.....+||||+||...+ ...+++|+ ..++++..++..+.||+.+|-+.+-..-.+++++
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~e  219 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIVE  219 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHHH
Confidence            99999999999999999999999999999998765 45566666 5688999999999999999998875433455554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=7.5e-23  Score=199.50  Aligned_cols=160  Identities=23%  Similarity=0.268  Sum_probs=136.4

Q ss_pred             hhcHHHHHHHHhcC--hHHHHHHHhcCCCCCcccCCCCCChHHHHH----------------------------------
Q 022566          131 KYEEDLLKEVEQLL--EPEEREILNQNATPNLGKISTAKWRPLQTL----------------------------------  174 (295)
Q Consensus       131 ~~~~~l~~ai~~~~--~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A----------------------------------  174 (295)
                      ....+|+.|+..+.  .+.++.|++.|++++..  +..|+||||.|                                  
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k--D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~  288 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIKKIIELGGDMDMK--CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSY  288 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHH
Confidence            45678999998885  47899999999998874  88999999975                                  


Q ss_pred             ---HHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHH--hCCHHHHHHHHhCCCCCcccCCCCChHHHHHHH-------
Q 022566          175 ---TLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ--VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ-------  242 (295)
Q Consensus       175 ---~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~--~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~-------  242 (295)
                         +..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.       
T Consensus       289 i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~  368 (764)
T PHA02716        289 ITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNI  368 (764)
T ss_pred             HHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcc
Confidence               34578899999999999999999999999999875  468899999999999999999999999999875       


Q ss_pred             -------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          243 -------SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       243 -------~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                             .++.+++++|+++|++++.+|..|.||||.+++........+++++|...
T Consensus       369 ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~  425 (764)
T PHA02716        369 LDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISD  425 (764)
T ss_pred             ccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhC
Confidence                   37899999999999999999999999999543322222248999998653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=7e-23  Score=167.65  Aligned_cols=124  Identities=18%  Similarity=0.248  Sum_probs=67.6

Q ss_pred             CCCCChHHHHHHHcCCH----HHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHH---HHHHHHhCCCCCcccC-CCCCh
Q 022566          164 STAKWRPLQTLTLSMQI----RYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQ---SVKLLIKYNVDVNVAD-NEGWT  235 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~---~v~~Ll~~ga~in~~d-~~g~T  235 (295)
                      +..+.++||.||..|+.    +++++|++.|++++.+|..|+||||+|+..|+.+   ++++|++.|+++|.++ ..|.|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~T   96 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNT   96 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence            34444555555555554    3444445555555555555555555555555433   2455555555555555 35555


Q ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          236 PLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       236 pLh~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      |||+|+..|+.+++++|+. .|++++.++..|.||||+|+..++    .+++++|..
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~----~~iv~~Ll~  149 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD----RRMMEILRA  149 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC----HHHHHHHHH
Confidence            5555555555555555553 455555555555555555555554    455555543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.6e-22  Score=191.23  Aligned_cols=156  Identities=22%  Similarity=0.202  Sum_probs=130.8

Q ss_pred             hcHHHHHHHHhc---ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCC---HHHHHHHHhCCCCCCccC-CCCChHH
Q 022566          132 YEEDLLKEVEQL---LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ---IRYMDMLLDGGLDIDSVD-KDGATPL  204 (295)
Q Consensus       132 ~~~~l~~ai~~~---~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~g~d~~~~d-~~g~tpL  204 (295)
                      ...+++.|+..+   ..+.++.|++.|++++..  +..|+||||+|+..++   .+++++|++.|++++..+ ..|.|||
T Consensus       109 G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~L  186 (489)
T PHA02798        109 GETPLYCLLSNGYINNLEILLFMIENGADTTLL--DKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTL  186 (489)
T ss_pred             cCcHHHHHHHcCCcChHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHH
Confidence            345677777664   568888888999888764  8889999999999887   899999999999998875 4688999


Q ss_pred             HHHHHh----CCHHHHHHHHhCCCC---------------------------------------CcccCCCCChHHHHHH
Q 022566          205 HYAVQV----GAMQSVKLLIKYNVD---------------------------------------VNVADNEGWTPLHIAI  241 (295)
Q Consensus       205 h~A~~~----g~~~~v~~Ll~~ga~---------------------------------------in~~d~~g~TpLh~A~  241 (295)
                      |.++..    ++.+++++|+++|++                                       +|.+|..|+||||+|+
T Consensus       187 h~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~  266 (489)
T PHA02798        187 HCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSV  266 (489)
T ss_pred             HHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHH
Confidence            988764    367888888877754                                       4456778999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          242 QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       242 ~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      ..|+.+++++|+++||+++.+|..|.|||++|+..++    .++++.|.+..
T Consensus       267 ~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~----~~iv~~lL~~~  314 (489)
T PHA02798        267 SHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES----KFIFNSILNKK  314 (489)
T ss_pred             HcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc----HHHHHHHHccC
Confidence            9999999999999999999999999999999999997    88888876653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.89  E-value=6e-22  Score=195.89  Aligned_cols=155  Identities=22%  Similarity=0.219  Sum_probs=90.1

Q ss_pred             HHHHHHHHhc-ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHc-CCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          134 EDLLKEVEQL-LEPEEREILNQNATPNLGKISTAKWRPLQTLTLS-MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       134 ~~l~~ai~~~-~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~-g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      .+++.|+..+ ..+.++.|+..|++++..  +..|+||||+|+.. ++.+++++|++.|++++.+|..|.||||+|+..|
T Consensus       309 TpLh~Aa~~g~~~~~v~~Ll~~gadin~~--d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~  386 (682)
T PHA02876        309 TPLYLMAKNGYDTENIRTLIMLGADVNAA--DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRN  386 (682)
T ss_pred             CHHHHHHHhCCCHHHHHHHHHcCCCCCCc--ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcC
Confidence            3455555554 345555555555554432  45555555555553 3455566666666666666666666666666666


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN-RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~-~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      +.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|++++.+|..|+||||+|+..|.   ..+++++|.
T Consensus       387 ~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~---~~~iv~lLl  463 (682)
T PHA02876        387 NVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC---KLDVIEMLL  463 (682)
T ss_pred             CHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCC---cHHHHHHHH
Confidence            6666666666666666666666666666655443 345566666666666666666666666666553   256666665


Q ss_pred             hcC
Q 022566          291 ILP  293 (295)
Q Consensus       291 ~lp  293 (295)
                      ..+
T Consensus       464 ~~G  466 (682)
T PHA02876        464 DNG  466 (682)
T ss_pred             HCC
Confidence            543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.2e-22  Score=189.76  Aligned_cols=150  Identities=25%  Similarity=0.332  Sum_probs=134.2

Q ss_pred             hcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHc-----CCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC---CH
Q 022566          142 QLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLS-----MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG---AM  213 (295)
Q Consensus       142 ~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~-----g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g---~~  213 (295)
                      ....+.++.|++.|++++..  +..|.||||.|+..     +..+++++|+++|+++|.+|..|.||||+|+..+   +.
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~--d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~  125 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGL--DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNL  125 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCC--CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChH
Confidence            34678999999999988864  78899999998864     6789999999999999999999999999999876   78


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCC---HHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN---RDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~---~~iv~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      +++++|+++|++++.+|..|.||||+|+..|+   .+++++|+++|++++.++ ..|.||||.++..+......+++++|
T Consensus       126 ~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~L  205 (489)
T PHA02798        126 EILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF  205 (489)
T ss_pred             HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHH
Confidence            99999999999999999999999999999998   999999999999999885 57999999998876444568999999


Q ss_pred             hhcC
Q 022566          290 KILP  293 (295)
Q Consensus       290 ~~lp  293 (295)
                      .+.+
T Consensus       206 i~~G  209 (489)
T PHA02798        206 VDNG  209 (489)
T ss_pred             HHCC
Confidence            7654

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.3e-21  Score=193.51  Aligned_cols=157  Identities=24%  Similarity=0.256  Sum_probs=121.3

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ....+..++.++....++.|+..|++++..  +..|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..+
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~--d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~  222 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEGGADVNAK--DIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSK  222 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhCCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcC
Confidence            455677888888888889999888888764  778899999999999999999999999988888888888888887777


Q ss_pred             CHHHHHHHH-----------------------------hCCCCCcccCCCCChHHHHHHHcCCH-HHHHHHHHcCCCCCC
Q 022566          212 AMQSVKLLI-----------------------------KYNVDVNVADNEGWTPLHIAIQSRNR-DIAKVLLINGADKSR  261 (295)
Q Consensus       212 ~~~~v~~Ll-----------------------------~~ga~in~~d~~g~TpLh~A~~~g~~-~iv~~Ll~~gad~~~  261 (295)
                      +.+++++|+                             +.|++++..+..|+||||+|+..++. +++++|+++|++++.
T Consensus       223 ~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~  302 (682)
T PHA02876        223 NIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNA  302 (682)
T ss_pred             CHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCC
Confidence            766655443                             34556666777788888888877775 577777788888888


Q ss_pred             CCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          262 KTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       262 ~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      +|..|.||||+|+..|+   ..+++++|...+
T Consensus       303 ~d~~g~TpLh~Aa~~g~---~~~~v~~Ll~~g  331 (682)
T PHA02876        303 KNIKGETPLYLMAKNGY---DTENIRTLIMLG  331 (682)
T ss_pred             cCCCCCCHHHHHHHhCC---CHHHHHHHHHcC
Confidence            88888888888887775   256677666554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=3e-22  Score=189.48  Aligned_cols=158  Identities=27%  Similarity=0.297  Sum_probs=141.9

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCC-------------cccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPN-------------LGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD  197 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~-------------~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d  197 (295)
                      ....+++.|++.++.+.++.+|+.+....             ++..|..|.||||+||+.|+++++..|+..|++++.++
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn  303 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN  303 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC
Confidence            34567999999999999999999876543             23358899999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHh-CC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCHHHH
Q 022566          198 KDGATPLHYAVQVGAMQSVKLLIK-YN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS---RKTKDGKTALDM  272 (295)
Q Consensus       198 ~~g~tpLh~A~~~g~~~~v~~Ll~-~g-a~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~---~~d~~g~TpL~~  272 (295)
                      .++.||||.|+.+|++.+|+.|++ .| ..+|..|-.|+||||.|++.||..++++|+..||...   ..|.+|.||||+
T Consensus       304 ~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~  383 (929)
T KOG0510|consen  304 KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHL  383 (929)
T ss_pred             CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhH
Confidence            999999999999999999999999 44 4578889999999999999999999999999999876   569999999999


Q ss_pred             HHhcCCCCChHHHHHHhhhc
Q 022566          273 SLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       273 A~~~g~~~~~~~iv~~L~~l  292 (295)
                      |+.+|+    ..+|++|...
T Consensus       384 Aa~~g~----~~av~~Li~~  399 (929)
T KOG0510|consen  384 AAKYGN----TSAVQKLISH  399 (929)
T ss_pred             HHHhcc----HHHHHHHHHc
Confidence            999997    7888887543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.4e-21  Score=186.47  Aligned_cols=158  Identities=21%  Similarity=0.275  Sum_probs=132.9

Q ss_pred             HHHHHHHHh--cChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcC------CHHHHHHHHhCCCCCCccCCCCChHHH
Q 022566          134 EDLLKEVEQ--LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM------QIRYMDMLLDGGLDIDSVDKDGATPLH  205 (295)
Q Consensus       134 ~~l~~ai~~--~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g------~~~~v~~Ll~~g~d~~~~d~~g~tpLh  205 (295)
                      .+++.++..  +..+.++.|++.|+++|..  + .+.||||.|+..+      +.+++++|+++|++++.++..|.||||
T Consensus        37 t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~--~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~  113 (494)
T PHA02989         37 SILLLYLKRKDVKIKIVKLLIDNGADVNYK--G-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIV  113 (494)
T ss_pred             CHHHHHHhcCCCChHHHHHHHHcCCCccCC--C-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            344444443  3578999999999999864  3 4689999988754      468999999999999999999999999


Q ss_pred             HHHHh---CCHHHHHHHHhCCCCC-cccCCCCChHHHHHHHc--CCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCC
Q 022566          206 YAVQV---GAMQSVKLLIKYNVDV-NVADNEGWTPLHIAIQS--RNRDIAKVLLINGADKSR-KTKDGKTALDMSLCYGR  278 (295)
Q Consensus       206 ~A~~~---g~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~--g~~~iv~~Ll~~gad~~~-~d~~g~TpL~~A~~~g~  278 (295)
                      .|+..   ++.+++++|+++|+++ +.+|..|+||||+|+..  ++.+++++|+++|++++. .+..|.||||+|+..+.
T Consensus       114 ~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~  193 (494)
T PHA02989        114 CFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDI  193 (494)
T ss_pred             HHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhccc
Confidence            88765   6789999999999999 89999999999998764  689999999999999998 68899999999998875


Q ss_pred             CCChHHHHHHhhhcCC
Q 022566          279 DFKSYDLAKLLKILPV  294 (295)
Q Consensus       279 ~~~~~~iv~~L~~lp~  294 (295)
                      ...+.+++++|.....
T Consensus       194 ~~~~~~iv~~Ll~~Ga  209 (494)
T PHA02989        194 DVISIKVIKYLIKKGV  209 (494)
T ss_pred             ccccHHHHHHHHhCCC
Confidence            5556899999977653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.88  E-value=8.6e-22  Score=192.22  Aligned_cols=154  Identities=20%  Similarity=0.215  Sum_probs=121.4

Q ss_pred             HHHHHHHHh---cChHHHHHHHhcCCCCCcccCCCCCChHHHHHHH----------------------------------
Q 022566          134 EDLLKEVEQ---LLEPEEREILNQNATPNLGKISTAKWRPLQTLTL----------------------------------  176 (295)
Q Consensus       134 ~~l~~ai~~---~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~----------------------------------  176 (295)
                      .+|+.|+..   +..+.++.||..|++++.  .+..|+||||+|+.                                  
T Consensus        34 t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~--~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~  111 (661)
T PHA02917         34 NALHAYLFNEHCNNVEVVKLLLDSGTNPLH--KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKS  111 (661)
T ss_pred             cHHHHHHHhhhcCcHHHHHHHHHCCCCccc--cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHh
Confidence            445554333   556666666666666653  35566666665554                                  


Q ss_pred             -cCCHHHHHHHHhCCCCCCccCCCCChHHHHHH--HhCCHHHHHHHHhCCCCCcccCC---CC-----------ChHHHH
Q 022566          177 -SMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV--QVGAMQSVKLLIKYNVDVNVADN---EG-----------WTPLHI  239 (295)
Q Consensus       177 -~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~--~~g~~~~v~~Ll~~ga~in~~d~---~g-----------~TpLh~  239 (295)
                       .|+.++|++|+++|++++.+|..|+||||+|+  ..|+.+++++|+++|+++|..|.   .|           .||||+
T Consensus       112 ~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~  191 (661)
T PHA02917        112 KNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHL  191 (661)
T ss_pred             hcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHH
Confidence             34568899999999999999999999999654  47899999999999999986653   34           599999


Q ss_pred             HHH-----------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          240 AIQ-----------SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       240 A~~-----------~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      |+.           .++.+++++|+++|++++.+|..|.||||+|+..|+.  ..+|+++|..
T Consensus       192 a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~--~~eivk~Li~  252 (661)
T PHA02917        192 YIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHI--DIDIVKLLMK  252 (661)
T ss_pred             HHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCC--cHHHHHHHHh
Confidence            986           4689999999999999999999999999999999972  2589999864

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.1e-21  Score=160.57  Aligned_cols=134  Identities=19%  Similarity=0.192  Sum_probs=117.3

Q ss_pred             hcHHHHHHHHhcChHHHH----HHHhcCCCCCcccCCCCCChHHHHHHHcCCHH---HHHHHHhCCCCCCccC-CCCChH
Q 022566          132 YEEDLLKEVEQLLEPEER----EILNQNATPNLGKISTAKWRPLQTLTLSMQIR---YMDMLLDGGLDIDSVD-KDGATP  203 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~----~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~---~v~~Ll~~g~d~~~~d-~~g~tp  203 (295)
                      -...++.++..++...+.    .++..+..++  ..+..|+||||+|+..|+.+   ++++|++.|++++.++ ..|.||
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~--~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~Tp   97 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLH--RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTL   97 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh--ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcH
Confidence            445788999999885544    4445565544  45889999999999998865   4899999999999998 589999


Q ss_pred             HHHHHHhCCHHHHHHHHh-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 022566          204 LHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK  267 (295)
Q Consensus       204 Lh~A~~~g~~~~v~~Ll~-~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~  267 (295)
                      ||+|+..|+.+++++|+. .|++++.++..|+||||+|+..++.+++++|+++|++++.++..|.
T Consensus        98 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         98 LHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            999999999999999995 7999999999999999999999999999999999999999998875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.9e-22  Score=161.97  Aligned_cols=127  Identities=20%  Similarity=0.223  Sum_probs=107.7

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhCCC--C-----CCccCCCCChHHHHHHHhCCH---HHHHHHHhCCCCCcccCC
Q 022566          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGGL--D-----IDSVDKDGATPLHYAVQVGAM---QSVKLLIKYNVDVNVADN  231 (295)
Q Consensus       162 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~--d-----~~~~d~~g~tpLh~A~~~g~~---~~v~~Ll~~ga~in~~d~  231 (295)
                      ..|..|.||||+|+..|+.  +.+++..+.  +     ++.+|..|.||||+|+..|+.   +++++|++.|++++.++.
T Consensus        12 ~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            3578899999999999984  333332221  2     335688999999999999987   468999999999999984


Q ss_pred             -CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          232 -EGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       232 -~g~TpLh~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                       .|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..|+    .+++++|....+
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~----~~i~~~Ll~~ga  150 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD----AKMMNILRAKGA  150 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence             89999999999999999999997 599999999999999999999997    899999876543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.5e-21  Score=172.58  Aligned_cols=116  Identities=26%  Similarity=0.296  Sum_probs=95.5

Q ss_pred             CCCCCCh-HHHHHHHcCCHHHHHHHHhCCCCCCccC----CCCChHHHHHHHhCCHHHHHHHHhCCCCCccc-CCCCChH
Q 022566          163 ISTAKWR-PLQTLTLSMQIRYMDMLLDGGLDIDSVD----KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA-DNEGWTP  236 (295)
Q Consensus       163 ~d~~g~t-~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d----~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~-d~~g~Tp  236 (295)
                      .|..|+| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|+++|.+ +..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            3555555 5666677788889999999888888863    57888999998888889999999889888875 4578899


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Q 022566          237 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  278 (295)
Q Consensus       237 Lh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  278 (295)
                      ||+|+..|+.+++++|+.+|++++.+|..|.||||+|+..++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~  149 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN  149 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC
Confidence            999988888999999998899988888888899998887654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.87  E-value=7.7e-22  Score=161.32  Aligned_cols=139  Identities=28%  Similarity=0.351  Sum_probs=124.3

Q ss_pred             HHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHH
Q 022566          136 LLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQS  215 (295)
Q Consensus       136 l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~  215 (295)
                      +..++.+.....+..+.+  ..  ++..|..|.|||+||+..|++.+|++|++.|++++...+...++|.+|++.|..++
T Consensus       133 ~slsVhql~L~~~~~~~~--n~--VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdi  208 (296)
T KOG0502|consen  133 LSLSVHQLHLDVVDLLVN--NK--VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDI  208 (296)
T ss_pred             hhHHHHHHHHHHHHHHhh--cc--ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHH
Confidence            445555554444433332  22  34569999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Q 022566          216 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  278 (295)
Q Consensus       216 v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  278 (295)
                      |++|+.++.++|..|.+|-|||-||++.++.+|++.|+..||+++..+..|++++.+|+..|+
T Consensus       209 V~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGy  271 (296)
T KOG0502|consen  209 VELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGY  271 (296)
T ss_pred             HHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999999996

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=1.1e-21  Score=195.26  Aligned_cols=152  Identities=32%  Similarity=0.459  Sum_probs=121.4

Q ss_pred             HHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHH
Q 022566          136 LLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQS  215 (295)
Q Consensus       136 l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~  215 (295)
                      +.-+...+..+.++.++..++..+..  ...+.++||+|...+...+++.++++|++++.++..|+||||+||.+|++.+
T Consensus       478 Lhlaaq~Gh~~~~~llle~~~~~~~~--~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~  555 (1143)
T KOG4177|consen  478 LHLAAQEGHTEVVQLLLEGGANDNLD--AKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDL  555 (1143)
T ss_pred             hhhhhccCCchHHHHhhhcCCccCcc--chhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchH
Confidence            44444444444444444444333222  3444555555555555556666666777888888899999999999999999


Q ss_pred             HHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          216 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       216 v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      |++|+++|++++.++..|+||||.||..|+.+|+.+|+++||++|..+.+|.|||++|+..|+    ++++++|+...
T Consensus       556 VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~----~~~~k~l~~~~  629 (1143)
T KOG4177|consen  556 VKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGY----LSVVKLLKVVT  629 (1143)
T ss_pred             HHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcc----cchhhHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999999998    89999998654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.4e-20  Score=180.77  Aligned_cols=154  Identities=22%  Similarity=0.223  Sum_probs=131.8

Q ss_pred             HHHHHHHHhc---ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCC----HHHHHHHHhCCC--CCCccCCCCChHH
Q 022566          134 EDLLKEVEQL---LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ----IRYMDMLLDGGL--DIDSVDKDGATPL  204 (295)
Q Consensus       134 ~~l~~ai~~~---~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~--d~~~~d~~g~tpL  204 (295)
                      .-|+..+..+   ..+.++.|+..|++++.   +..|+||||+|+..++    .+++++|+++|+  +++.+|..|.|||
T Consensus       345 ~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~---k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~L  421 (672)
T PHA02730        345 AMLINYLHYGDMVSIPILRCMLDNGATMDK---TTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCM  421 (672)
T ss_pred             HHHHHHHhcCCcCcHHHHHHHHHCCCCCCc---CCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchH
Confidence            3455566644   57889999999999995   3689999999998875    899999999997  6899999999999


Q ss_pred             HH---HHHhC---------CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHH
Q 022566          205 HY---AVQVG---------AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK-DGKTALD  271 (295)
Q Consensus       205 h~---A~~~g---------~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~-~g~TpL~  271 (295)
                      |.   |...+         ..+++++|+.+|+++|.+|..|+||||+|+..++.+++++|+++||+++.++. .|.||||
T Consensus       422 h~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~  501 (672)
T PHA02730        422 YGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQ  501 (672)
T ss_pred             hHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHH
Confidence            94   33232         23579999999999999999999999999999999999999999999999997 5999999


Q ss_pred             HHHhc--CCCCChHHHHHHhhhcCC
Q 022566          272 MSLCY--GRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       272 ~A~~~--g~~~~~~~iv~~L~~lp~  294 (295)
                      +|+..  ++    .+++++|.+..+
T Consensus       502 ~Aa~~~~~~----~eIv~~LLs~ga  522 (672)
T PHA02730        502 KSSYRRENK----TKLVDLLLSYHP  522 (672)
T ss_pred             HHHHhhcCc----HHHHHHHHHcCC
Confidence            99874  54    899999987765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=2.6e-21  Score=168.57  Aligned_cols=117  Identities=32%  Similarity=0.440  Sum_probs=80.8

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCccCCC--------------------------------------CCh
Q 022566          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGG-LDIDSVDKD--------------------------------------GAT  202 (295)
Q Consensus       162 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~d~~~~d~~--------------------------------------g~t  202 (295)
                      ..|.+|.|+||+++.+++.++|+.||+.| ++++.+++-                                      |+|
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQT  342 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQT  342 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcch
Confidence            34899999999999999999999999977 467776664                                      455


Q ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHhcCC
Q 022566          203 PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGR  278 (295)
Q Consensus       203 pLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~TpL~~A~~~g~  278 (295)
                      +|++|+.+|+.++|+.||.+|+|+|++|.+|-|+|+.||.+||.+|+++||.. ++|+...|.+|-|+|.+|...||
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            55555556666666666666666666666666666666666666666666643 55666666666666666666665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.3e-20  Score=173.26  Aligned_cols=151  Identities=13%  Similarity=0.070  Sum_probs=130.9

Q ss_pred             HHHHhcChHHHHHHHhcCCCCCc----ccCCCCCChHHHHHHH--cCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          138 KEVEQLLEPEEREILNQNATPNL----GKISTAKWRPLQTLTL--SMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       138 ~ai~~~~~~~~~~lL~~g~~~~~----~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      -++.....+.+.-|+.+|+++++    -..+..++|+||.++.  .|+.++|++|+++|++++..  .+.||||.|+..+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            34555667788888889999871    1357779999999999  89999999999999999874  4589999999999


Q ss_pred             CHHHHHHHHhCCCCCccc------CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHH
Q 022566          212 AMQSVKLLIKYNVDVNVA------DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL  285 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~------d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~i  285 (295)
                      +.+++++|+.+|++.+..      +..+.||+|.|+..++.+++++|+++||+++.+|..|.||||+|+..|+    .++
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~----~ei  236 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGY----IDL  236 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCC----HHH
Confidence            999999999999854322      2358899999999999999999999999999999999999999999997    899


Q ss_pred             HHHhhhcCC
Q 022566          286 AKLLKILPV  294 (295)
Q Consensus       286 v~~L~~lp~  294 (295)
                      +++|.+..+
T Consensus       237 VelLL~~GA  245 (437)
T PHA02795        237 VSWLLENGA  245 (437)
T ss_pred             HHHHHHCCC
Confidence            999987764

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=4.5e-21  Score=151.44  Aligned_cols=121  Identities=31%  Similarity=0.359  Sum_probs=111.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCC-CCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHH
Q 022566          169 RPLQTLTLSMQIRYMDMLLDGGLD-IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD  247 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~  247 (295)
                      ..+.+|+..+.+..|+.||+..++ +|.+|.+|+||||.|+.+|+.+||+.|+..|++++.+...||||||.||...+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            357889999999999999986654 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          248 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       248 iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      |+-+||++|+|+++......||||+|+....   ....+++|..-
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn---~r~t~~~Ll~d  186 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRN---SRDTLELLLHD  186 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccc---hHHHHHHHhhc
Confidence            9999999999999999999999999998875   57788887543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=3e-20  Score=181.47  Aligned_cols=148  Identities=16%  Similarity=0.213  Sum_probs=119.5

Q ss_pred             hHHHHHHHhcCCCCCcccCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC----------
Q 022566          145 EPEEREILNQNATPNLGKISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG----------  211 (295)
Q Consensus       145 ~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g----------  211 (295)
                      .+.++.++..+...+  ..|..|.||||+|+..   |+.++|++|++.|++++..+..|+||||+|+..|          
T Consensus        12 ~~~~~~l~~~~~~~~--~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         12 LDELKQMLRDRDPND--TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHHhccCccc--ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            456788887776664  4588999999998655   8899999999999999999999999999887644          


Q ss_pred             -------------------------CHHHHHHHHhCCCCCcccCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCCCC
Q 022566          212 -------------------------AMQSVKLLIKYNVDVNVADNEGWTPLHIAI--QSRNRDIAKVLLINGADKSRKTK  264 (295)
Q Consensus       212 -------------------------~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~--~~g~~~iv~~Ll~~gad~~~~d~  264 (295)
                                               +.+++++|+++|+++|.+|..|+||||+|+  ..|+.+++++|+++||+++.+|.
T Consensus        90 ~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~  169 (661)
T PHA02917         90 ALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDE  169 (661)
T ss_pred             HHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccc
Confidence                                     457788899999999999999999999654  57899999999999999987654


Q ss_pred             C---C-----------CCHHHHHHhcCC-------CCChHHHHHHhhhcCC
Q 022566          265 D---G-----------KTALDMSLCYGR-------DFKSYDLAKLLKILPV  294 (295)
Q Consensus       265 ~---g-----------~TpL~~A~~~g~-------~~~~~~iv~~L~~lp~  294 (295)
                      .   |           .||||+|+..+-       .....+++++|....+
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga  220 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI  220 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCC
Confidence            3   3           599999986210       0113899999976544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-21  Score=166.10  Aligned_cols=137  Identities=27%  Similarity=0.306  Sum_probs=119.0

Q ss_pred             HHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHH
Q 022566          137 LKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSV  216 (295)
Q Consensus       137 ~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v  216 (295)
                      +.-+++|+.-.++..|+.- .-+++..|..|.+|||+||+.|+..+++.|+..|+.+|..+....||||+|+.+|+.++|
T Consensus         5 f~wcregna~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen    5 FGWCREGNAFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             hhhhhcCCeEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHH
Confidence            3444455444444444321 223344588999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 022566          217 KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL  274 (295)
Q Consensus       217 ~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~  274 (295)
                      +.|+.+.+++|..+..|+|||||||..|.-.+++-|+..||-+++.|+.|.|||..|-
T Consensus        84 qkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   84 QKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            9999999999999999999999999999999999999999999999999999998774

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=7.7e-20  Score=161.76  Aligned_cols=148  Identities=20%  Similarity=0.265  Sum_probs=126.9

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccC--CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCcc-CCCCChHHHHH
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKI--STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV-DKDGATPLHYA  207 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~--d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~-d~~g~tpLh~A  207 (295)
                      .....++.|+..+..+.++.|++.|++++....  +..|.||||+|+..++.+++++|+++|++++.. +..|.||||+|
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~A  111 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYIS  111 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHH
Confidence            345678888988999999999999999987532  568999999999999999999999999999986 45799999999


Q ss_pred             HHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHH
Q 022566          208 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK  287 (295)
Q Consensus       208 ~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~  287 (295)
                      +..++.+++++|+.+|++++.+|..|+||||+|+..++..++.++.  |..   .+..+.+|++++.       +.++++
T Consensus       112 a~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~-------n~ei~~  179 (300)
T PHA02884        112 VLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKILI-------NFDILK  179 (300)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhhc-------cHHHHH
Confidence            9999999999999999999999999999999999999999886664  433   3556778888652       267777


Q ss_pred             Hhh
Q 022566          288 LLK  290 (295)
Q Consensus       288 ~L~  290 (295)
                      +|.
T Consensus       180 ~Li  182 (300)
T PHA02884        180 ILV  182 (300)
T ss_pred             HHH
Confidence            764

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=4.1e-20  Score=175.15  Aligned_cols=154  Identities=27%  Similarity=0.335  Sum_probs=108.5

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHh-----CCCCCCccCCCCChHHHH
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLD-----GGLDIDSVDKDGATPLHY  206 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-----~g~d~~~~d~~g~tpLh~  206 (295)
                      ...+++.|+..+..+..+.|++.|+++.-  .+..|.+|+|.|+..|..++++..+.     .+..+|..+..|.||||.
T Consensus       154 ~~TpLh~A~~~~~~E~~k~Li~~~a~~~K--~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhl  231 (929)
T KOG0510|consen  154 GFTPLHLAARKNKVEAKKELINKGADPCK--SDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHL  231 (929)
T ss_pred             CCchhhHHHhcChHHHHHHHHhcCCCCCc--ccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhh
Confidence            33456666666666655666666665543  25555556666666666666665555     444556666677777777


Q ss_pred             HHHhCCHHHHHHHHhCCCC---------------CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 022566          207 AVQVGAMQSVKLLIKYNVD---------------VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD  271 (295)
Q Consensus       207 A~~~g~~~~v~~Ll~~ga~---------------in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~  271 (295)
                      |+..|++++++.+++.|+.               +|..|++|.||||+|++.|+.+++..|+..|++++.++.++.||||
T Consensus       232 Ave~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH  311 (929)
T KOG0510|consen  232 AVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLH  311 (929)
T ss_pred             hhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchH
Confidence            7777888888888877543               3456788888888888888888888888888888888888888888


Q ss_pred             HHHhcCCCCChHHHHHHhhh
Q 022566          272 MSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       272 ~A~~~g~~~~~~~iv~~L~~  291 (295)
                      .|+.+|+    ++.++-|++
T Consensus       312 ~AA~yg~----~ntv~rLL~  327 (929)
T KOG0510|consen  312 FAAIYGR----INTVERLLQ  327 (929)
T ss_pred             HHHHccc----HHHHHHHHh
Confidence            8888886    777776655

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=2.1e-20  Score=170.34  Aligned_cols=156  Identities=26%  Similarity=0.386  Sum_probs=139.4

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      .-...++.|+.+++.+.+..+|..|++++.  .+.+|.|+||.+|.-.+.+||++|+++|++||..|..|+||||.|+..
T Consensus        39 ~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~--~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   39 EDSAVFLEACSRGDLEEVRKLLNRGASPNL--CNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             CchHHHHhccccccHHHHHHHhccCCCccc--cCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc
Confidence            344568999999999999999999988865  488899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCc-----------------------------------------------------------ccCC
Q 022566          211 GAMQSVKLLIKYNVDVN-----------------------------------------------------------VADN  231 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in-----------------------------------------------------------~~d~  231 (295)
                      |++.++++|+.+|+++-                                                           ..+.
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA  196 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence            99999999999887532                                                           1333


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          232 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       232 ~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      .|-|.||.|+..|..++.++|+++|.+++++|.+|+||||.|+..|+    .++.++|.+.
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~----~~~~elL~~~  253 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQ----EDACELLVEH  253 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhh----HhHHHHHHHh
Confidence            48899999999999999999999999999999999999999999997    7888877543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=4.6e-20  Score=135.03  Aligned_cols=89  Identities=37%  Similarity=0.585  Sum_probs=83.3

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHH
Q 022566          171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK  250 (295)
Q Consensus       171 Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~  250 (295)
                      ||+||..|+++++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988877    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 022566          251 VLLINGADKSRKT  263 (295)
Q Consensus       251 ~Ll~~gad~~~~d  263 (295)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.82  E-value=7e-19  Score=135.21  Aligned_cols=123  Identities=37%  Similarity=0.623  Sum_probs=117.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHH
Q 022566          163 ISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       163 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~  242 (295)
                      .+..|.||||.|+..++.+++++|++.|.+.+..+..|.||||+|+..++.+++++|+..|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            35679999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       243 ~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      .++.+++++|+.+|.+++..+..|.||+++|...++    .+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH----LEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC----HHHHHHh
Confidence            999999999999999999999999999999999986    8998887

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.81  E-value=5.3e-19  Score=177.86  Aligned_cols=142  Identities=18%  Similarity=0.214  Sum_probs=130.5

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      ....+|+.|+..+..+.++.|+..|++++..  |..|+||||+|+..|+.+++++|+..++..+.  ..|.++||.|+..
T Consensus       557 ~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~--d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~  632 (823)
T PLN03192        557 KGRTPLHIAASKGYEDCVLVLLKHACNVHIR--DANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKR  632 (823)
T ss_pred             CCCCHHHHHHHcChHHHHHHHHhcCCCCCCc--CCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHh
Confidence            4567899999999999999999999988764  88999999999999999999999998876553  4577999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHhc
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG-KTALDMSLCY  276 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g-~TpL~~A~~~  276 (295)
                      |+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++||+++..|..| .||++++...
T Consensus       633 g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        633 NDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998 9999988654

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=4.3e-19  Score=145.66  Aligned_cols=128  Identities=16%  Similarity=0.140  Sum_probs=112.3

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcC----CCCCcccCCCCCChHHHHHHHcCC----HHHHHHHHhCCCCCCccCC-CCCh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQN----ATPNLGKISTAKWRPLQTLTLSMQ----IRYMDMLLDGGLDIDSVDK-DGAT  202 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g----~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~d~~~~d~-~g~t  202 (295)
                      ....|+.|+..++.+.++.++...    ...++...|..|+||||+|+..|+    .+++++|++.|++++.++. .|.|
T Consensus        21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~T  100 (169)
T PHA02741         21 GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDT  100 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCC
Confidence            456789999999999999876421    123344568899999999999999    5899999999999999985 8999


Q ss_pred             HHHHHHHhCCHHHHHHHHh-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 022566          203 PLHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK  259 (295)
Q Consensus       203 pLh~A~~~g~~~~v~~Ll~-~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~  259 (295)
                      |||+|+..++.+++++|+. .|++++..|..|+||||+|+..++.+++++|+++++..
T Consensus       101 pLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        101 ALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999998 59999999999999999999999999999999987654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.81  E-value=1.3e-19  Score=180.47  Aligned_cols=156  Identities=30%  Similarity=0.411  Sum_probs=133.3

Q ss_pred             cHHHHHHHHhc-ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          133 EEDLLKEVEQL-LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~-~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ..+++.+...+ ..+....++..+.+++..  ...|+||||+|+..|+.+++..|++.++..+.....|-++||.|...+
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~--s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~  518 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADPNAV--SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED  518 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCcchh--ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh
Confidence            33455566665 566667777777777764  667888888888888888888888888777777777888888888888


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      ...+++.++++|++++.++..|.||||.|+.+|+..+|++|+++|++++.+++.|+||||.||.+|+    .+|+++|.+
T Consensus       519 ~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~----~~i~~LLlk  594 (1143)
T KOG4177|consen  519 TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGH----NDIAELLLK  594 (1143)
T ss_pred             hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcCh----HHHHHHHHH
Confidence            8888888889999999999999999999999999999999999999999999999999999999997    899999988


Q ss_pred             cCC
Q 022566          292 LPV  294 (295)
Q Consensus       292 lp~  294 (295)
                      .++
T Consensus       595 ~GA  597 (1143)
T KOG4177|consen  595 HGA  597 (1143)
T ss_pred             cCC
Confidence            765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=1.7e-19  Score=145.72  Aligned_cols=129  Identities=17%  Similarity=0.148  Sum_probs=106.4

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCC---CcccCCCCCChHHHHHHHcCCH---HHHHHHHhCCCCCCccC-CCCChHH
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATP---NLGKISTAKWRPLQTLTLSMQI---RYMDMLLDGGLDIDSVD-KDGATPL  204 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~---~~~~~d~~g~t~Lh~A~~~g~~---~~v~~Ll~~g~d~~~~d-~~g~tpL  204 (295)
                      ...+|+.|+..+....+........+.   .+...+..|+||||+|+..|+.   +++++|++.|++++.++ ..|.|||
T Consensus        17 g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~L   96 (154)
T PHA02736         17 GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPL   96 (154)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHH
Confidence            345688888888743332222211121   1234588899999999999987   46899999999999998 4899999


Q ss_pred             HHHHHhCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 022566          205 HYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  260 (295)
Q Consensus       205 h~A~~~g~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~  260 (295)
                      |+|+..|+.+++++|+.. |++++.++..|+||||+|+..|+.+++++|+.+|++.+
T Consensus        97 h~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         97 HIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999984 99999999999999999999999999999999999875

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.80  E-value=1.6e-19  Score=169.99  Aligned_cols=155  Identities=24%  Similarity=0.293  Sum_probs=142.4

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCC-----------CCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNA-----------TPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGA  201 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~-----------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~  201 (295)
                      ...+..|+..++.+.+..+|+...           .++.+..|..|+|+||.|+.+|+.+++++|+++.+-++..+..|.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~   83 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGI   83 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCc
Confidence            356788999999999999987532           134455688999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Q 022566          202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK  281 (295)
Q Consensus       202 tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~  281 (295)
                      +|||+|++.|+.+++++|+..+..+|.....|.||||.|+++|+.+++.+|+++|+++.++|..+.|||.+|++.|+   
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr---  160 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR---  160 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997   


Q ss_pred             hHHHHHHhhh
Q 022566          282 SYDLAKLLKI  291 (295)
Q Consensus       282 ~~~iv~~L~~  291 (295)
                       .+++++|..
T Consensus       161 -~~Vvq~ll~  169 (854)
T KOG0507|consen  161 -AEVVQMLLQ  169 (854)
T ss_pred             -hHHHHHHhh
Confidence             899998864

>PHA02730 ankyrin-like protein; Provisional

Probab=99.79  E-value=1.1e-18  Score=167.65  Aligned_cols=143  Identities=17%  Similarity=0.136  Sum_probs=122.6

Q ss_pred             HHHHHHhcCCCCCcccCCCCCChHHHHHHHcC---CHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC--CHHHHHHHHh
Q 022566          147 EEREILNQNATPNLGKISTAKWRPLQTLTLSM---QIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG--AMQSVKLLIK  221 (295)
Q Consensus       147 ~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g---~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~  221 (295)
                      .++..++..++++ ...|..|+||||+|+..|   +.++|++|+++|++++.+|..|+||||+|+..+  +.+++++|++
T Consensus        22 ~~~~~~~~~~~in-~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~  100 (672)
T PHA02730         22 KIKLEIETCHNLS-KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLIS  100 (672)
T ss_pred             HHHHHHHHhcchh-hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHh
Confidence            4455555555666 346888999999999997   599999999999999999999999999999976  7999999999


Q ss_pred             CCC--CCcccCCCCChHHHHHHH--cCCHHHHHHHHH-cCCCCCCCCC-----CCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          222 YNV--DVNVADNEGWTPLHIAIQ--SRNRDIAKVLLI-NGADKSRKTK-----DGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       222 ~ga--~in~~d~~g~TpLh~A~~--~g~~~iv~~Ll~-~gad~~~~d~-----~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      .|+  +++..+..+.+|||.++.  .++.+++++|+. .+++++....     .|.+|+++|...++    .+||++|..
T Consensus       101 ~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~----~eIvklLi~  176 (672)
T PHA02730        101 SYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPR----PEVLLWLLK  176 (672)
T ss_pred             cCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCc----hHHHHHHHH
Confidence            965  457788889999999998  899999999996 6788876633     79999999999997    999999987


Q ss_pred             cCC
Q 022566          292 LPV  294 (295)
Q Consensus       292 lp~  294 (295)
                      ...
T Consensus       177 ~g~  179 (672)
T PHA02730        177 SEC  179 (672)
T ss_pred             cCC
Confidence            654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=3.9e-19  Score=162.06  Aligned_cols=144  Identities=28%  Similarity=0.387  Sum_probs=131.6

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCC------------
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK------------  198 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~------------  198 (295)
                      ..-..++.++...+...++.++..|+++|..  |..+|||||.|+..|++.++++|+.+|+++-..+.            
T Consensus        72 DglTalhq~~id~~~e~v~~l~e~ga~Vn~~--d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~e  149 (527)
T KOG0505|consen   72 DGLTALHQACIDDNLEMVKFLVENGANVNAQ--DNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDE  149 (527)
T ss_pred             ccchhHHHHHhcccHHHHHHHHHhcCCcccc--ccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCc
Confidence            3445688999999999999999999998865  99999999999999999999999998876433221            


Q ss_pred             -----------------------------------------------CCChHHHHHHHhCCHHHHHHHHhCCCCCcccCC
Q 022566          199 -----------------------------------------------DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN  231 (295)
Q Consensus       199 -----------------------------------------------~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~  231 (295)
                                                                     .|.|.||+|+..|..++.++|+.+|.+++.+|.
T Consensus       150 a~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~  229 (527)
T KOG0505|consen  150 ATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDY  229 (527)
T ss_pred             chhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccc
Confidence                                                           589999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc
Q 022566          232 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY  276 (295)
Q Consensus       232 ~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~  276 (295)
                      +||||||.|+..|+.+++++|+++|++++..+..|.||+.+|..-
T Consensus       230 dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  230 DGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhh
Confidence            999999999999999999999999999999999999999998764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.78  E-value=3.2e-18  Score=170.87  Aligned_cols=157  Identities=22%  Similarity=0.204  Sum_probs=127.3

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHH-HHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQ-TLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV  208 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh-~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~  208 (295)
                      ...+..++.|++.++...++.+++.+...+.+..|..|+|||| .|+..++.+++++|+++|+    .+..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            4567889999999999999999998444444556899999999 8889999999999999987    6778999999998


Q ss_pred             HhC---CHHHHHHHHhCCCC------Cc----ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC------------
Q 022566          209 QVG---AMQSVKLLIKYNVD------VN----VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT------------  263 (295)
Q Consensus       209 ~~g---~~~~v~~Ll~~ga~------in----~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d------------  263 (295)
                      ..+   ...++.++...+..      ++    .....|.||||+|+..|+.+++++|+++|++++.++            
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence            722   22344444444322      11    123579999999999999999999999999998764            


Q ss_pred             --CCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          264 --KDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       264 --~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                        ..|.||||+|+..|+    .+++++|.+.|+
T Consensus       171 ~~~~g~tpL~~Aa~~~~----~~iv~lLl~~ga  199 (743)
T TIGR00870       171 SFYHGESPLNAAACLGS----PSIVALLSEDPA  199 (743)
T ss_pred             cccccccHHHHHHHhCC----HHHHHHHhcCCc
Confidence              358999999999997    899999998874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.78  E-value=7e-18  Score=160.71  Aligned_cols=128  Identities=20%  Similarity=0.210  Sum_probs=114.4

Q ss_pred             ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCC--ChHHHHHHHhCCH---HHHHH
Q 022566          144 LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDG--ATPLHYAVQVGAM---QSVKL  218 (295)
Q Consensus       144 ~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g--~tpLh~A~~~g~~---~~v~~  218 (295)
                      ..+.++.+++.|++..    .....++++.|+..|+.++|++|+++|++++.+|..|  .||||+|+.....   .++++
T Consensus       320 ~ieiIK~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Ilkl  395 (631)
T PHA02792        320 YINVIKCMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKL  395 (631)
T ss_pred             cHHHHHHHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHH
Confidence            5678888899998764    2235678999999999999999999999999998775  6999998776654   46899


Q ss_pred             HHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHh
Q 022566          219 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC  275 (295)
Q Consensus       219 Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~  275 (295)
                      |+.+|+++|.+|..|+||||+|+..++.+++++|+++|++++.++..|.|||++|+.
T Consensus       396 LIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        396 CKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999976

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.77  E-value=3.8e-19  Score=145.58  Aligned_cols=140  Identities=21%  Similarity=0.293  Sum_probs=124.2

Q ss_pred             hHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCC
Q 022566          145 EPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV  224 (295)
Q Consensus       145 ~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga  224 (295)
                      ...+...|..++..|-  .+.-+|+|+.+++...+++++..+.++  -+|..|..|.|||++|+..|++.+|++|++.|+
T Consensus       109 ~~k~sttltN~~rgne--vs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GA  184 (296)
T KOG0502|consen  109 VDKVSTTLTNGARGNE--VSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGA  184 (296)
T ss_pred             cceeeeeecccccCCc--cccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCC
Confidence            3344455666666553  477899999999999998888777765  478899999999999999999999999999999


Q ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       225 ~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      +++.......|+|.+|+..|..+||++|+.++.|+|..|.+|-|||-+|++-+|    .+|+|.|..-
T Consensus       185 dp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnh----vkcve~Ll~s  248 (296)
T KOG0502|consen  185 DPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNH----VKCVESLLNS  248 (296)
T ss_pred             ChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCCh----HHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999998    8999988653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.77  E-value=2.8e-18  Score=171.32  Aligned_cols=124  Identities=23%  Similarity=0.229  Sum_probs=109.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC--------------CCCChHHHHHHHhCCHHHHHHHHhCCCCCccc
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD--------------KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA  229 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~  229 (295)
                      ...|.||||+|+..|+.++|++|+++|++++.++              ..|.||||+|+..|+.+++++|++.|++++.+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            3569999999999999999999999999998653              35899999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHcC---------CHHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          230 DNEGWTPLHIAIQSR---------NRDIAKVLLINGADK-------SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       230 d~~g~TpLh~A~~~g---------~~~iv~~Ll~~gad~-------~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      |..|+||||+|+..+         ...+.++++..++..       +..|.+|.||||+|+..|+    .+++++|..
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~----~~l~~lLL~  278 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGR----IVLFRLKLA  278 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCC----ccHHHHHHH
Confidence            999999999999987         234667777666554       6789999999999999997    789998865

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.75  E-value=9.5e-18  Score=159.79  Aligned_cols=142  Identities=16%  Similarity=0.160  Sum_probs=118.7

Q ss_pred             HHHHHHHhcCCCCCcccCCCCCChHHHH-HHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHH-hCCHHHHHHHHhCC
Q 022566          146 PEEREILNQNATPNLGKISTAKWRPLQT-LTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ-VGAMQSVKLLIKYN  223 (295)
Q Consensus       146 ~~~~~lL~~g~~~~~~~~d~~g~t~Lh~-A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~-~g~~~~v~~Ll~~g  223 (295)
                      ..++-++.-+..++..  +.+|.+++|+ |+..|++++|++|+.+|+++|.++..|.||+|+|+. .++.+++++|+++|
T Consensus        52 ~~~~~~~~~~~~~~~~--n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~G  129 (631)
T PHA02792         52 IKNDVVILLLSSVDYK--NINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKG  129 (631)
T ss_pred             HHHHHHHHHHhCCCcC--ccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCC
Confidence            3334444555555543  6678889986 556889999999999999999999999999999966 69999999999999


Q ss_pred             CCCc------------------------------------ccCCCCChHHHHHHHcC-------CHHHHHHHHHcCCCCC
Q 022566          224 VDVN------------------------------------VADNEGWTPLHIAIQSR-------NRDIAKVLLINGADKS  260 (295)
Q Consensus       224 a~in------------------------------------~~d~~g~TpLh~A~~~g-------~~~iv~~Ll~~gad~~  260 (295)
                      |+++                                    ..|..|.||||+|+..+       +.+++++|+.+|++++
T Consensus       130 ad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~  209 (631)
T PHA02792        130 IPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMR  209 (631)
T ss_pred             CCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcC
Confidence            8732                                    34567999999999999       8999999999999999


Q ss_pred             CCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          261 RKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       261 ~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      .+|..|.||||+|+.+.+  ...+|+++|..
T Consensus       210 ~~d~~g~t~l~~~~~~~~--i~~ei~~~L~~  238 (631)
T PHA02792        210 YYTYREHTTLYYYVDKCD--IKREIFDALFD  238 (631)
T ss_pred             ccCCCCChHHHHHHHccc--chHHHHHHHHh
Confidence            999999999999999982  23899999864

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=2.5e-17  Score=117.10  Aligned_cols=102  Identities=29%  Similarity=0.491  Sum_probs=92.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHH
Q 022566          170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA  249 (295)
Q Consensus       170 ~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv  249 (295)
                      -+.|++.+|.++-|+-.+..|.++|..- .|++|||||+-+|...++++|+..|++++.+|..|-|||..|+..||.+||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4678899999999999999998887644 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHH
Q 022566          250 KVLLINGADKSRKTKDGKTALDM  272 (295)
Q Consensus       250 ~~Ll~~gad~~~~d~~g~TpL~~  272 (295)
                      ++|+++||+-..+..+|.+.+..
T Consensus        84 klLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhh
Confidence            99999999999988889776643

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=4.5e-17  Score=119.05  Aligned_cols=83  Identities=39%  Similarity=0.545  Sum_probs=77.6

Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChH
Q 022566          204 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY  283 (295)
Q Consensus       204 Lh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~  283 (295)
                      ||+|+..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+    .
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGN----L   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTH----H
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCC----H
Confidence            7999999999999999999988886    8999999999999999999999999999999999999999999996    9


Q ss_pred             HHHHHhhhcCC
Q 022566          284 DLAKLLKILPV  294 (295)
Q Consensus       284 ~iv~~L~~lp~  294 (295)
                      +++++|.+...
T Consensus        73 ~~~~~Ll~~g~   83 (89)
T PF12796_consen   73 EIVKLLLEHGA   83 (89)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHcCC
Confidence            99999987643

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=3.5e-17  Score=155.92  Aligned_cols=144  Identities=19%  Similarity=0.236  Sum_probs=122.6

Q ss_pred             hHHHHHHHhcCCCC---CcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC-----------------------C
Q 022566          145 EPEEREILNQNATP---NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD-----------------------K  198 (295)
Q Consensus       145 ~~~~~~lL~~g~~~---~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d-----------------------~  198 (295)
                      .+.++.||+-....   ........|.||||+|+.+.+.++|++|++.|+|++.+.                       .
T Consensus       159 n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~Y  238 (782)
T KOG3676|consen  159 NELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFY  238 (782)
T ss_pred             HHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceee
Confidence            35556666543321   112235679999999999999999999999999987632                       1


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHhc
Q 022566          199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD--KSRKTKDGKTALDMSLCY  276 (295)
Q Consensus       199 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad--~~~~d~~g~TpL~~A~~~  276 (295)
                      .|..||.+||..++.+|+++|+++|||++.+|..|+|.||..+.+-..++..+++++|++  ...+|+.|.|||.+|++.
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAakl  318 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKL  318 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHh
Confidence            377899999999999999999999999999999999999999999999999999999999  999999999999999999


Q ss_pred             CCCCChHHHHHHhhhc
Q 022566          277 GRDFKSYDLAKLLKIL  292 (295)
Q Consensus       277 g~~~~~~~iv~~L~~l  292 (295)
                      |+    .+|.+.+.+.
T Consensus       319 Gk----~emf~~ile~  330 (782)
T KOG3676|consen  319 GK----KEMFQHILER  330 (782)
T ss_pred             hh----HHHHHHHHHh
Confidence            97    7777766543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.72  E-value=1.8e-16  Score=134.10  Aligned_cols=128  Identities=34%  Similarity=0.466  Sum_probs=119.2

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC-----HHHHHHHHhCCC---CCcccCCC
Q 022566          161 GKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA-----MQSVKLLIKYNV---DVNVADNE  232 (295)
Q Consensus       161 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~-----~~~v~~Ll~~ga---~in~~d~~  232 (295)
                      ...+..+.+++|.++..+...++.+++..|++++.++..|.||||+|+..++     .+++++|++.|+   ..+.+|..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCC
Confidence            3446678899999999999999999999999999999999999999999999     999999999999   66777999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          233 GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       233 g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      |+||||+|+..|+.+++++|++.|++++.++..|.|+++.|+..++    .+++++|...
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~l~~~  202 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR----IELVKLLLDK  202 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccch----HHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999997    7888877653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.67  E-value=2.1e-17  Score=140.54  Aligned_cols=93  Identities=32%  Similarity=0.476  Sum_probs=88.0

Q ss_pred             HhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 022566          187 LDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG  266 (295)
Q Consensus       187 l~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g  266 (295)
                      -+.--|.|.-|..|.+|||+||..|+..+++.|+.+|+.+|..+....||||+|+.+||.++|+.|+++.+|+|+.|..|
T Consensus        21 d~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehg  100 (448)
T KOG0195|consen   21 DDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHG  100 (448)
T ss_pred             cCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccC
Confidence            34556788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCCC
Q 022566          267 KTALDMSLCYGRD  279 (295)
Q Consensus       267 ~TpL~~A~~~g~~  279 (295)
                      .|||||||..|++
T Consensus       101 ntplhyacfwgyd  113 (448)
T KOG0195|consen  101 NTPLHYACFWGYD  113 (448)
T ss_pred             CCchhhhhhhcHH
Confidence            9999999999973

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.65  E-value=3.5e-16  Score=147.74  Aligned_cols=155  Identities=21%  Similarity=0.194  Sum_probs=138.9

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ...+++|+-++....++.|++..+-..+.  +..|.+|||+|++.|+.+++++++.++..+|.....|.||||.|+..|+
T Consensus        50 fTalhha~Lng~~~is~llle~ea~ldl~--d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh  127 (854)
T KOG0507|consen   50 FTLLHHAVLNGQNQISKLLLDYEALLDLC--DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH  127 (854)
T ss_pred             hhHHHHHHhcCchHHHHHHhcchhhhhhh--hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence            34689999999999999999888776664  6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC--------CCCCCCCCCCHHHHHHhcCCCCChHH
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD--------KSRKTKDGKTALDMSLCYGRDFKSYD  284 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad--------~~~~d~~g~TpL~~A~~~g~~~~~~~  284 (295)
                      .+++.+|+.+|+++-+++..+.|+|-.|++.|..++++.|++....        -..++-.+.+|||+|+++||    .+
T Consensus       128 ~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh----~~  203 (854)
T KOG0507|consen  128 LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGH----VE  203 (854)
T ss_pred             hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcch----HH
Confidence            9999999999999999999999999999999999999999976322        23455668899999999998    89


Q ss_pred             HHHHhhhcC
Q 022566          285 LAKLLKILP  293 (295)
Q Consensus       285 iv~~L~~lp  293 (295)
                      +++.|+.-|
T Consensus       204 ~~~~ll~ag  212 (854)
T KOG0507|consen  204 CMQALLEAG  212 (854)
T ss_pred             HHHHHHhcC
Confidence            999987654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.63  E-value=1.9e-15  Score=148.47  Aligned_cols=106  Identities=31%  Similarity=0.432  Sum_probs=99.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHH
Q 022566          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  248 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~i  248 (295)
                      ..|+.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-------CCCCCCCCCCCCCHHHHHH
Q 022566          249 AKVLLIN-------GADKSRKTKDGKTALDMSL  274 (295)
Q Consensus       249 v~~Ll~~-------gad~~~~d~~g~TpL~~A~  274 (295)
                      +++|+.+       |++++..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999998       9999999998988877654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.60  E-value=4e-14  Score=108.47  Aligned_cols=119  Identities=32%  Similarity=0.479  Sum_probs=110.9

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+++.|+..+..+.+..++..+...+.  .+..|.+|||.|+..++.+++++|+..|++++..+..|.||+|+|+..++
T Consensus         8 ~t~l~~a~~~~~~~~i~~li~~~~~~~~--~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~   85 (126)
T cd00204           8 RTPLHLAASNGHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGN   85 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCCCc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCc
Confidence            4678999999999999999999887643  47889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  253 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll  253 (295)
                      .+++++|+..|.+++..+..|.||+++|+..++.+++++|+
T Consensus        86 ~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          86 LDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.60  E-value=6.9e-15  Score=128.76  Aligned_cols=98  Identities=30%  Similarity=0.399  Sum_probs=90.0

Q ss_pred             CCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhC-CCCCcccCCCCCh
Q 022566          157 TPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWT  235 (295)
Q Consensus       157 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~in~~d~~g~T  235 (295)
                      ++|.. -...|.|+|++|+.+|+.++|+.||..|+|+|.+|.+|.|+|+.||.+||.+|+++||.. ++++...|.+|-|
T Consensus       331 nVNaK-AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgST  409 (452)
T KOG0514|consen  331 DVNAK-ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGST  409 (452)
T ss_pred             Ccchh-hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCch
Confidence            44433 356789999999999999999999999999999999999999999999999999999988 8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHc
Q 022566          236 PLHIAIQSRNRDIAKVLLIN  255 (295)
Q Consensus       236 pLh~A~~~g~~~iv~~Ll~~  255 (295)
                      +|.+|...||.+|.-+|..+
T Consensus       410 Al~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  410 ALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             hhhhHHhcCchHHHHHHHHH
Confidence            99999999999999888754

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.59  E-value=1.3e-15  Score=101.44  Aligned_cols=55  Identities=42%  Similarity=0.633  Sum_probs=27.1

Q ss_pred             HHhCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 022566          219 LIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS  273 (295)
Q Consensus       219 Ll~~g-a~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A  273 (295)
                      ||++| ++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 77777777888888888888888888888877888888888888887776

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=5.9e-15  Score=105.07  Aligned_cols=103  Identities=24%  Similarity=0.256  Sum_probs=92.0

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      ..+...+.++...+++.....|-++|-   -..|++|||+|+-.|+++++++|+..|++++.+|++|.|||..|++.||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~---~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNE---IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHH---HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            345678899999999999999866653   34899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHH
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHI  239 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~  239 (295)
                      .||++|++.|++-.....+|.+.+..
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHHhh
Confidence            99999999999988888888666543

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.59  E-value=1.2e-14  Score=123.67  Aligned_cols=123  Identities=15%  Similarity=0.233  Sum_probs=111.9

Q ss_pred             cchhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCcc-CCCCChHHHHH
Q 022566          129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV-DKDGATPLHYA  207 (295)
Q Consensus       129 ~~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~-d~~g~tpLh~A  207 (295)
                      ++...++|+.++..++.+....||..-..+|  .+|..|+++|..|+..|+.++|++|++.|+|+|.. +..++||||+|
T Consensus         9 ld~~~~~Lle~i~Kndt~~a~~LLs~vr~vn--~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEAALALLSTVRQVN--QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             ccchhhHHHHHHccCcHHHHHHHHHHhhhhh--ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence            4566789999999999999999998744444  46999999999999999999999999999999975 56699999999


Q ss_pred             HHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 022566          208 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  253 (295)
Q Consensus       208 ~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll  253 (295)
                      +.+|+.+++++|++.|+.....+.-|+|+-.+|+.-|+.+||..+-
T Consensus        87 ALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            9999999999999999999999999999999999999999988764

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=6.2e-15  Score=134.20  Aligned_cols=117  Identities=30%  Similarity=0.398  Sum_probs=103.7

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHH
Q 022566          171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK  250 (295)
Q Consensus       171 Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~  250 (295)
                      |.-|+..|.+++|+-++..--|+...+..|.|+||-|+..||.+||++||+.|+++|..|.+||||||+|+.++++.+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            44578899999999999988889889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCC-CCCCCHHHHHHh--cCCCCChHHHHHHhhh
Q 022566          251 VLLINGADKSRKT-KDGKTALDMSLC--YGRDFKSYDLAKLLKI  291 (295)
Q Consensus       251 ~Ll~~gad~~~~d-~~g~TpL~~A~~--~g~~~~~~~iv~~L~~  291 (295)
                      .|++.|+.+.+.. .++.||..-|-.  -|+    .+|.+||--
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY----~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGY----DQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhH----HHHHHHHHH
Confidence            9999999887655 578899887754  354    788888843

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.57  E-value=3e-14  Score=120.34  Aligned_cols=123  Identities=27%  Similarity=0.308  Sum_probs=113.1

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCC-----HHHHHHHHhCCC---CCCccCCCCChH
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ-----IRYMDMLLDGGL---DIDSVDKDGATP  203 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~-----~~~v~~Ll~~g~---d~~~~d~~g~tp  203 (295)
                      ....++.+...+....+..++..+.+++.  .+..|.||||+|+..++     .++++.|++.|+   ..+..+..|.||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tp  150 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVNA--KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP  150 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCccc--ccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCch
Confidence            45567778888888888999999999865  48999999999999999     999999999999   566669999999


Q ss_pred             HHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 022566          204 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING  256 (295)
Q Consensus       204 Lh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  256 (295)
                      ||+|+..|+.+++++|++.|++++..+..|.|++++|+..++.++++.|+..+
T Consensus       151 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         151 LHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             hHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999976

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=1.9e-14  Score=95.12  Aligned_cols=54  Identities=48%  Similarity=0.789  Sum_probs=25.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 022566          200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  253 (295)
Q Consensus       200 g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll  253 (295)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            345555555555555555555555555555555555555555555555555543

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.54  E-value=8.4e-15  Score=97.48  Aligned_cols=55  Identities=45%  Similarity=0.762  Sum_probs=31.4

Q ss_pred             HHhCC-CCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHH
Q 022566          186 LLDGG-LDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA  240 (295)
Q Consensus       186 Ll~~g-~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A  240 (295)
                      ||++| ++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88889999999999999999999999999988999999999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.51  E-value=1.1e-13  Score=117.74  Aligned_cols=118  Identities=26%  Similarity=0.298  Sum_probs=108.3

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCccc-CCCCChHHHHHHHcCCH
Q 022566          168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA-DNEGWTPLHIAIQSRNR  246 (295)
Q Consensus       168 ~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~g~~  246 (295)
                      ..||.-++-.+..+-...||..--.+|.+|..|.++|..|+..|+.++|++|++.|+|+|.. +..+.||||+|+.+|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            46899999999999999999876679999999999999999999999999999999999865 56799999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          247 DIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       247 ~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      ++.++|++.|+.+...|.-|+|+-.+|+.-|+    .++|..+
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~----H~CV~iI  131 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGH----HECVAII  131 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcc----hHHHHHH
Confidence            99999999999999999999999999999997    5666554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=1.7e-13  Score=134.71  Aligned_cols=87  Identities=32%  Similarity=0.427  Sum_probs=83.4

Q ss_pred             hHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Q 022566          202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK  281 (295)
Q Consensus       202 tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~  281 (295)
                      +.|+.|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+   
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~---  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF---  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc---
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999997   


Q ss_pred             hHHHHHHhhhc
Q 022566          282 SYDLAKLLKIL  292 (295)
Q Consensus       282 ~~~iv~~L~~l  292 (295)
                       .+++++|...
T Consensus       161 -~~iv~~Ll~~  170 (664)
T PTZ00322        161 -REVVQLLSRH  170 (664)
T ss_pred             -HHHHHHHHhC
Confidence             8999999765

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.49  E-value=8.5e-14  Score=91.94  Aligned_cols=54  Identities=39%  Similarity=0.650  Sum_probs=46.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHH
Q 022566          167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLI  220 (295)
Q Consensus       167 g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll  220 (295)
                      |+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999986

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.7e-13  Score=125.02  Aligned_cols=118  Identities=17%  Similarity=0.168  Sum_probs=103.6

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .-|+.|...|..+.|+.++..-.++..  .+..|.|+||-|+..||.+||++|++.|+++|..|.+||||||.|+..++.
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSq--pNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQ--PNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCC--CCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            348889999999999999988777765  488999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCccc-CCCCChHHHHHH--HcCCHHHHHHHH
Q 022566          214 QSVKLLIKYNVDVNVA-DNEGWTPLHIAI--QSRNRDIAKVLL  253 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~-d~~g~TpLh~A~--~~g~~~iv~~Ll  253 (295)
                      .+++.|++.|+-|-+. -.++.|+..-+-  +.|...|.+||-
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            9999999999876543 356778877653  468889999995

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.42  E-value=1.4e-12  Score=124.86  Aligned_cols=123  Identities=21%  Similarity=0.221  Sum_probs=112.3

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCccc------CC---------------CCCChHHHHHHHcCCHHHHHHHHhCCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGK------IS---------------TAKWRPLQTLTLSMQIRYMDMLLDGGL  191 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~------~d---------------~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  191 (295)
                      ...|+-||.+.+.+.|+.|+..|++++...      .+               .-|..||-+||..++.+++++|+++|+
T Consensus       185 qSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gA  264 (782)
T KOG3676|consen  185 QSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGA  264 (782)
T ss_pred             cchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCC
Confidence            345899999999999999999999987432      11               125679999999999999999999999


Q ss_pred             CCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCC--CcccCCCCChHHHHHHHcCCHHHHHHHHHc
Q 022566          192 DIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD--VNVADNEGWTPLHIAIQSRNRDIAKVLLIN  255 (295)
Q Consensus       192 d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  255 (295)
                      |++.+|..|+|.||..+..-..+|..+++++|++  ...+++.|.|||.+|++.|+.++.+.+++.
T Consensus       265 d~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  265 DPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999999999999999999999999999999  889999999999999999999999999987

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.40  E-value=2.4e-13  Score=132.81  Aligned_cols=153  Identities=20%  Similarity=0.239  Sum_probs=115.7

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCcc-CCCCChHHHHHHH
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV-DKDGATPLHYAVQ  209 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~-d~~g~tpLh~A~~  209 (295)
                      .+...|-.++..+..+++..++.+|+++..  +|..|.+||.+|+-.||..+|+.|+.+.++++.. |+.+.|+|.+||.
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganieh--rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEH--RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccc--cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            344456667777778888888888777655  4778888888888888888888888888777764 5667788888888


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCCCHHHHHHhcCCCCChHHHHH
Q 022566          210 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT--KDGKTALDMSLCYGRDFKSYDLAK  287 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d--~~g~TpL~~A~~~g~~~~~~~iv~  287 (295)
                      .|+.++|++||..|++-..++-...|||.+|..-|..+|+.+|+.+|+.|+.+.  +.|-.||++|...||    ....+
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh----~~at~  909 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGH----QAATL  909 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccc----cHHHH
Confidence            888888888888888877777777788888888888888888888887776655  457778888888877    44444


Q ss_pred             Hh
Q 022566          288 LL  289 (295)
Q Consensus       288 ~L  289 (295)
                      .|
T Consensus       910 ~l  911 (2131)
T KOG4369|consen  910 SL  911 (2131)
T ss_pred             HH
Confidence            44

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.27  E-value=2.3e-12  Score=126.06  Aligned_cols=126  Identities=23%  Similarity=0.262  Sum_probs=117.9

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCccc-CCCCChHHHHHHHc
Q 022566          165 TAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA-DNEGWTPLHIAIQS  243 (295)
Q Consensus       165 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~  243 (295)
                      .+-.|+|-.||..|+.+++++|+..|+++..+|..|.+||.+|+-.||..+|+.|+.+.++++.+ |+.+.|+|.+||..
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            34558999999999999999999999999999999999999999999999999999999998865 78899999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      |+.++|++||.+|++-..++-...|||.+|..-|+    .+||++|..-..
T Consensus       835 gr~~vvelLl~~gankehrnvsDytPlsla~Sggy----~~iI~~llS~Gs  881 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGY----TKIIHALLSSGS  881 (2131)
T ss_pred             CcchHHHHHHHhhccccccchhhcCchhhhcCcch----HHHHHHHhhccc
Confidence            99999999999999999999999999999999997    899999976553

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.09  E-value=4.5e-11  Score=114.35  Aligned_cols=96  Identities=20%  Similarity=0.315  Sum_probs=75.6

Q ss_pred             HHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCC-CChHHHHHHHhCCHHHHHHHHhCCCC
Q 022566          147 EEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD-GATPLHYAVQVGAMQSVKLLIKYNVD  225 (295)
Q Consensus       147 ~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~  225 (295)
                      .++.++.....--.+..|..|+|+||+++..+...++++|+++|++++.+|.. |+||||.|+.+|+++++-+|+.+|+.
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            34555544333334556888888888888888888888888888888888865 88888888888888888888888888


Q ss_pred             CcccCCCCChHHHHHHH
Q 022566          226 VNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       226 in~~d~~g~TpLh~A~~  242 (295)
                      +.++|..|..||..-++
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            88888888888887665

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.08  E-value=9.7e-11  Score=112.13  Aligned_cols=83  Identities=34%  Similarity=0.418  Sum_probs=80.0

Q ss_pred             CCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 022566          193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD  271 (295)
Q Consensus       193 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~  271 (295)
                      .|.+|..|+|+||+|+..+...++++|+++|++++.+|. .|+||||-|+.+|+++|+-+||.+|+.+.++|+.|..||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            678899999999999999999999999999999999996 7999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 022566          272 MSLC  275 (295)
Q Consensus       272 ~A~~  275 (295)
                      .-++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8887

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.05  E-value=7.6e-10  Score=100.67  Aligned_cols=85  Identities=27%  Similarity=0.391  Sum_probs=79.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCccCCC-CChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHH
Q 022566          170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKD-GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  248 (295)
Q Consensus       170 ~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~i  248 (295)
                      -||.+++.|+.++.--||..|+++|..+.. |.||||+|++.|+..-+++|+-+|||++..|..|+||+.+|-..||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            489999999999999999999999998765 9999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHH
Q 022566          249 AKVLLI  254 (295)
Q Consensus       249 v~~Ll~  254 (295)
                      ++-|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            877764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.01  E-value=3.2e-10  Score=102.62  Aligned_cols=94  Identities=23%  Similarity=0.290  Sum_probs=79.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHH
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~  242 (295)
                      ...+...+++|++.|++..++-+.-.|.|++.+|.+.+|+||+|+..|+++++++|++. +.+++.+|++|+|||.-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34455678888899998888888888889988888889999999999999999988887 78888889999999999988


Q ss_pred             cCCHHHHHHHHHcCC
Q 022566          243 SRNRDIAKVLLINGA  257 (295)
Q Consensus       243 ~g~~~iv~~Ll~~ga  257 (295)
                      .+|.+++++|-+...
T Consensus       583 F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQY  597 (622)
T ss_pred             cCcHHHHHHHHHHhc
Confidence            899999888876543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.99  E-value=4.5e-10  Score=101.72  Aligned_cols=91  Identities=24%  Similarity=0.371  Sum_probs=85.4

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHhc
Q 022566          198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCY  276 (295)
Q Consensus       198 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~TpL~~A~~~  276 (295)
                      .++..++++|+..|.+..++.+.-.|.|++.+|.+.+|+||+|+..|+.+++++|++. +.+++.+|..|+|||+-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            4567789999999999999999999999999999999999999999999999999965 899999999999999999999


Q ss_pred             CCCCChHHHHHHhhhc
Q 022566          277 GRDFKSYDLAKLLKIL  292 (295)
Q Consensus       277 g~~~~~~~iv~~L~~l  292 (295)
                      +|    .+++++|.++
T Consensus       584 ~h----~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KH----KEVVKLLEEA  595 (622)
T ss_pred             Cc----HHHHHHHHHH
Confidence            98    8999999765

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.95  E-value=3.4e-09  Score=97.93  Aligned_cols=119  Identities=22%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCC--CCccCCCCChHHHHHHHh
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLD--IDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d--~~~~d~~g~tpLh~A~~~  210 (295)
                      ...++.++..++.-.+++.-..|.+..+.  +.+..+.||+|+..|+-++|+++|++|..  ++..+..|.|+||-|+..
T Consensus       867 seeil~av~~~D~~klqE~h~~gg~ll~~--~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNGGSLLIQ--GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQ  944 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcCCceEee--CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHh
Confidence            33445555555544444444444443332  33444555555555555555555555432  233344455555555555


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  253 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll  253 (295)
                      ++..++++|++.|+.+...|..|.||-.-|-+.|..+++.+|-
T Consensus       945 ~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             cchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHh
Confidence            5555555555555555555555555555555555555544443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.94  E-value=2.9e-09  Score=96.98  Aligned_cols=95  Identities=26%  Similarity=0.367  Sum_probs=81.9

Q ss_pred             CccCCCCCh------HHHHHHHhCCHHHHHHHHhCCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 022566          194 DSVDKDGAT------PLHYAVQVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG  266 (295)
Q Consensus       194 ~~~d~~g~t------pLh~A~~~g~~~~v~~Ll~~ga~in~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g  266 (295)
                      -.+|.+|.+      -||..++.|+.+..--||..||++|..+. .|.||||+|++.|+..-+++|+-+|||+...|.+|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            345666655      48999999999999999999999998875 69999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCCCCChHHHHHH
Q 022566          267 KTALDMSLCYGRDFKSYDLAKL  288 (295)
Q Consensus       267 ~TpL~~A~~~g~~~~~~~iv~~  288 (295)
                      .||+.+|-..||...+.-++++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999995444444443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.92  E-value=1.6e-09  Score=62.08  Aligned_cols=29  Identities=48%  Similarity=0.669  Sum_probs=20.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 022566          232 EGWTPLHIAIQSRNRDIAKVLLINGADKS  260 (295)
Q Consensus       232 ~g~TpLh~A~~~g~~~iv~~Ll~~gad~~  260 (295)
                      +|+||||+||..|+.+++++|+++|+|++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36677777777777777777777776665

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.92  E-value=8.7e-09  Score=95.31  Aligned_cols=116  Identities=28%  Similarity=0.341  Sum_probs=103.7

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCC--CcccCCCCChHHHHHHHcCCHHH
Q 022566          171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD--VNVADNEGWTPLHIAIQSRNRDI  248 (295)
Q Consensus       171 Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~--in~~d~~g~TpLh~A~~~g~~~i  248 (295)
                      +..|+..+++--+.....+|.++-.++.+..+.||+|+..|+-++|+|++++|..  +++.|..|.|+||-|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            5566777776656666678888889999999999999999999999999999865  67888999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       249 v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      ..+|++.||.+...|..|.||-.-|-+.|.    .+++.||.
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d----~dlaayle  987 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGD----PDLAAYLE  987 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCC----chHHHHHh
Confidence            999999999999999999999999999997    78888885

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.88  E-value=2.9e-09  Score=62.54  Aligned_cols=32  Identities=47%  Similarity=0.667  Sum_probs=23.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 022566          232 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKT  263 (295)
Q Consensus       232 ~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d  263 (295)
                      +|+||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36777777777777777777777777777665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.84  E-value=1.7e-08  Score=97.67  Aligned_cols=129  Identities=22%  Similarity=0.198  Sum_probs=110.0

Q ss_pred             ccchhcHHHHHHHHhcChHHHHHHHhcCCC--CCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHH
Q 022566          128 TISKYEEDLLKEVEQLLEPEEREILNQNAT--PNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLH  205 (295)
Q Consensus       128 ~~~~~~~~l~~ai~~~~~~~~~~lL~~g~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh  205 (295)
                      ..+.-+..++.+++.|+.+.+++.+.....  .|++..|.-|+++|++|+.+.+.+++++|++++..+       ..+|.
T Consensus        21 ~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL   93 (822)
T KOG3609|consen   21 DLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALL   93 (822)
T ss_pred             ccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHH
Confidence            345567889999999999999999988766  788889999999999999999999999999987666       35899


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCc----------ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 022566          206 YAVQVGAMQSVKLLIKYNVDVN----------VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT  263 (295)
Q Consensus       206 ~A~~~g~~~~v~~Ll~~ga~in----------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d  263 (295)
                      +|+..|..++|++++.+-....          ..-..+.|||.+||..++.+|+++|+.+|+.+....
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            9999999999999998743221          223457899999999999999999999999876543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.81  E-value=1.4e-08  Score=94.03  Aligned_cols=88  Identities=32%  Similarity=0.391  Sum_probs=75.9

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCC--C--ccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCH
Q 022566          171 LQTLTLSMQIRYMDMLLDGGLDI--D--SVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR  246 (295)
Q Consensus       171 Lh~A~~~g~~~~v~~Ll~~g~d~--~--~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~  246 (295)
                      |..|+...++..+-+||.+|...  |  +.+.+|+|+||+||..|++.+.++|+=+|+|+-.+|..|+|+|.||-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            56677777788888899988643  2  3356689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 022566          247 DIAKVLLINGAD  258 (295)
Q Consensus       247 ~iv~~Ll~~gad  258 (295)
                      +|+.+|+++|+.
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            999999999874

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.80  E-value=9.1e-09  Score=94.69  Aligned_cols=87  Identities=33%  Similarity=0.584  Sum_probs=73.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHh--CCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCH
Q 022566          169 RPLQTLTLSMQIRYMDMLLD--GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR  246 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~--~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~  246 (295)
                      .|||+++.....+-+..++.  .+..++..|..|.||||+|+..|+...++.|+..|+++..++..||+|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            46899988887766555333  4556788888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHc
Q 022566          247 DIAKVLLIN  255 (295)
Q Consensus       247 ~iv~~Ll~~  255 (295)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888877755

>PF13606 Ank_3: Ankyrin repeat

Probab=98.80  E-value=7.1e-09  Score=59.39  Aligned_cols=28  Identities=46%  Similarity=0.719  Sum_probs=16.8

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhCCCCCc
Q 022566          200 GATPLHYAVQVGAMQSVKLLIKYNVDVN  227 (295)
Q Consensus       200 g~tpLh~A~~~g~~~~v~~Ll~~ga~in  227 (295)
                      |+||||+||..|+.+++++|+++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666665554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.76  E-value=2e-08  Score=92.49  Aligned_cols=89  Identities=19%  Similarity=0.223  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+++.++-..........+.......+...|..|.||||+|+..|+...++.|+..|+++..++..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            34455554444444444333334444555566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhC
Q 022566          214 QSVKLLIKY  222 (295)
Q Consensus       214 ~~v~~Ll~~  222 (295)
                      +++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            666555544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.75  E-value=3.7e-08  Score=91.38  Aligned_cols=98  Identities=18%  Similarity=0.237  Sum_probs=87.7

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcc--cCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLG--KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYA  207 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~--~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A  207 (295)
                      ..++..|+.|+...+...+..||.+|.....+  ..+.+|+|+||+||..|++.+.++|+=+|+|+..+|..|+|+|.||
T Consensus       622 ~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~ya  701 (749)
T KOG0705|consen  622 EPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYA  701 (749)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhH
Confidence            35677899999999999999999998765443  4567789999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhCCCCCc
Q 022566          208 VQVGAMQSVKLLIKYNVDVN  227 (295)
Q Consensus       208 ~~~g~~~~v~~Ll~~ga~in  227 (295)
                      -..|..+|+..|+.+|+..+
T Consensus       702 r~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  702 RQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhcccHHHHHHHHHcCCCcc
Confidence            99999999999999998644

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.73  E-value=1.8e-08  Score=59.08  Aligned_cols=31  Identities=55%  Similarity=0.802  Sum_probs=20.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhCCCCCcccC
Q 022566          200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVAD  230 (295)
Q Consensus       200 g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d  230 (295)
                      |.||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5666666666666666666666666666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.70  E-value=3.3e-08  Score=97.58  Aligned_cols=140  Identities=24%  Similarity=0.306  Sum_probs=108.3

Q ss_pred             HHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHhCCHHHHHHHH-hCCC
Q 022566          147 EEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGATPLHYAVQVGAMQSVKLLI-KYNV  224 (295)
Q Consensus       147 ~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga  224 (295)
                      ...+++..............|++.||+++..+..-+++.+++. |......|..|.-.+|+++. ++.++.-+|+ -.|.
T Consensus       554 ~~~r~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~  632 (975)
T KOG0520|consen  554 WAYRLLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGV  632 (975)
T ss_pred             HHHHHHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeeccc
Confidence            3333444444444444577899999999999999999999985 77777778888889999554 4455554444 4589


Q ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD------KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       225 ~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad------~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      .++.+|..||||||||+.+|+..++..|++-|++      +....-.|.|+-.+|...|+    -.|.-+|.+
T Consensus       633 ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~----~gia~~lse  701 (975)
T KOG0520|consen  633 AIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGH----KGIAGYLSE  701 (975)
T ss_pred             ccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccc----cchHHHHhh
Confidence            9999999999999999999999999999987765      34455569999999999998    466666654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.61  E-value=3.9e-08  Score=97.31  Aligned_cols=79  Identities=41%  Similarity=0.537  Sum_probs=63.1

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcC
Q 022566          199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG  277 (295)
Q Consensus       199 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g  277 (295)
                      .|.|+||.|+..|...++++|++.|+++|..|..|+||||.+...|+...+..|+++|++.++.+.+|.+||++|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            4677888888888888888888888888888888888888888888888888888888888888888888888886664

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.49  E-value=1.9e-07  Score=92.56  Aligned_cols=110  Identities=28%  Similarity=0.367  Sum_probs=95.4

Q ss_pred             ChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCC
Q 022566          144 LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN  223 (295)
Q Consensus       144 ~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  223 (295)
                      ..+.+..-+..+...++...-..|.++||.|+..|..-++++|+++|+++|..|..|++|||.+...|+...+..|+++|
T Consensus       633 ~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~  712 (785)
T KOG0521|consen  633 CLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRG  712 (785)
T ss_pred             chhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccc
Confidence            34444444556666666555667889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 022566          224 VDVNVADNEGWTPLHIAIQSRNRDIAKVLL  253 (295)
Q Consensus       224 a~in~~d~~g~TpLh~A~~~g~~~iv~~Ll  253 (295)
                      ++.+..+..|.+||++|....+.+++-+|.
T Consensus       713 a~~~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  713 ADPNAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             ccccccCccCcchhhHHhhhccccHHHHHh
Confidence            999999999999999998887777766554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.40  E-value=6.4e-07  Score=72.55  Aligned_cols=74  Identities=22%  Similarity=0.232  Sum_probs=65.2

Q ss_pred             CCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCC-CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 022566          190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT  263 (295)
Q Consensus       190 g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d  263 (295)
                      +.++|.+|..|+|||+.|+..|..+.+.+|+.+| +.+...|..|.+++.+|-+.|..++++.|.++-.+-...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            4678999999999999999999999999999999 8899999999999999999999999999998855544433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.40  E-value=8.5e-07  Score=78.83  Aligned_cols=84  Identities=20%  Similarity=0.246  Sum_probs=67.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHH
Q 022566          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  248 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~i  248 (295)
                      --|..||+.|.++.|+.|++.|+++|..|....+||.+|+..||.++|++|+++||-...-...|...+ |++-+  ..|
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaLn--d~I  114 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGALN--DRI  114 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhhh--HHH
Confidence            468899999999999999999999999999999999999999999999999999997765455665554 44333  234


Q ss_pred             HHHHHHc
Q 022566          249 AKVLLIN  255 (295)
Q Consensus       249 v~~Ll~~  255 (295)
                      =++|+.+
T Consensus       115 R~mllsy  121 (516)
T KOG0511|consen  115 RRMLLSY  121 (516)
T ss_pred             HHHHHHH
Confidence            4455554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.28  E-value=2.5e-06  Score=69.14  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=65.4

Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCC
Q 022566          158 PNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGG-LDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE  232 (295)
Q Consensus       158 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~  232 (295)
                      .+++.+|..|||+|+.|+..|+.+.+.+|+.+| +.+...|..|.+++.+|-..|...+++.|.+.-.+-...+..
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ns   78 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNS   78 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccC
Confidence            345567999999999999999999999999999 899999999999999999999999999999985554444443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.27  E-value=3.1e-06  Score=82.36  Aligned_cols=113  Identities=18%  Similarity=0.200  Sum_probs=94.4

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhC----CCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHc
Q 022566          168 WRPLQTLTLSMQIRYMDMLLDG----GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  243 (295)
Q Consensus       168 ~t~Lh~A~~~g~~~~v~~Ll~~----g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~  243 (295)
                      .--...|+..|+...|+..++.    ..++|+.|.-|+++|+.|+.+.+.+++++|++++..+       .-+|-+|+..
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV   98 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH
Confidence            3457789999999999998873    2578899999999999999999999999999986654       3689999999


Q ss_pred             CCHHHHHHHHHcCCCC----------CCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          244 RNRDIAKVLLINGADK----------SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~----------~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      |..++|++++.+-...          ...-.-+-|||.+||..++    +||+++|..
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~Nn----yEil~~Ll~  152 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNN----FEILQCLLT  152 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcc----hHHHHHHHH
Confidence            9999999999774322          2333457899999999986    999999964

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.26  E-value=4.5e-06  Score=74.33  Aligned_cols=85  Identities=18%  Similarity=0.199  Sum_probs=66.3

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ...+..|++.|+.+.++.|+..|.++|.  +|.-..+||.+|+..||..+|++|+++|+-...-...|..+ ||++.+. 
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~--vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd-  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNA--VDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND-  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcch--hhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH-
Confidence            5679999999999999999998777665  57778899999999999999999999998766544556554 5555544 


Q ss_pred             HHHHHHHHhC
Q 022566          213 MQSVKLLIKY  222 (295)
Q Consensus       213 ~~~v~~Ll~~  222 (295)
                       .|-+.|+.+
T Consensus       113 -~IR~mllsy  121 (516)
T KOG0511|consen  113 -RIRRMLLSY  121 (516)
T ss_pred             -HHHHHHHHH
Confidence             333455554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.67  E-value=5.4e-05  Score=75.45  Aligned_cols=114  Identities=20%  Similarity=0.201  Sum_probs=83.4

Q ss_pred             HHHhcChHHHHHHHhc-CCCCCcccCCCCCChHHHHHHHcCCHHHHHHH-HhCCCCCCccCCCCChHHHHHHHhCCHHHH
Q 022566          139 EVEQLLEPEEREILNQ-NATPNLGKISTAKWRPLQTLTLSMQIRYMDML-LDGGLDIDSVDKDGATPLHYAVQVGAMQSV  216 (295)
Q Consensus       139 ai~~~~~~~~~~lL~~-g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~L-l~~g~d~~~~d~~g~tpLh~A~~~g~~~~v  216 (295)
                      +...+..-.+..+++. +....  ..+..|...+|+++. ++.+..-++ .-.|..++.+|..|+||||+|+..|+..++
T Consensus       581 ~a~~lyawLie~~~e~~~~~~~--eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~  657 (975)
T KOG0520|consen  581 LAELLYAWLIEKVIEWAGSGDL--ELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLV  657 (975)
T ss_pred             HHHHhHHHHHHHHhcccccCch--hhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHH
Confidence            3344444555555554 33333  346777778898544 445554444 458899999999999999999999999999


Q ss_pred             HHHHhCCCCCc------ccCCCCChHHHHHHHcCCHHHHHHHHHc
Q 022566          217 KLLIKYNVDVN------VADNEGWTPLHIAIQSRNRDIAKVLLIN  255 (295)
Q Consensus       217 ~~Ll~~ga~in------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  255 (295)
                      ..|++.|++..      .....|.|+-.+|...|+..+.-+|-+.
T Consensus       658 a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  658 ASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99998876643      3345699999999999999888887654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.53  E-value=0.00011  Score=67.74  Aligned_cols=62  Identities=29%  Similarity=0.278  Sum_probs=53.7

Q ss_pred             HHHHHHHHhCCCCCcc------cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 022566          213 MQSVKLLIKYNVDVNV------ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL  274 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~------~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~  274 (295)
                      ...+++|.++++..|.      .+..--|+||+|+..|...+|.+||+.|+|+..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4567888888777653      3455679999999999999999999999999999999999999886

>smart00248 ANK ankyrin repeats

Probab=97.29  E-value=0.00052  Score=37.17  Aligned_cols=27  Identities=48%  Similarity=0.743  Sum_probs=17.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCC
Q 022566          233 GWTPLHIAIQSRNRDIAKVLLINGADK  259 (295)
Q Consensus       233 g~TpLh~A~~~g~~~iv~~Ll~~gad~  259 (295)
                      |.||+|+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            556666666666666666666666544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.10  E-value=0.00085  Score=62.12  Aligned_cols=62  Identities=27%  Similarity=0.319  Sum_probs=53.3

Q ss_pred             HHHHHHHHhCCCCCCc------cCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHH
Q 022566          180 IRYMDMLLDGGLDIDS------VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI  241 (295)
Q Consensus       180 ~~~v~~Ll~~g~d~~~------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~  241 (295)
                      ...+++|.+++++.|.      .+..-.|+||||+..|..++|.+||+.|+|+..+|..|+||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4567778887776653      3445679999999999999999999999999999999999999987

>smart00248 ANK ankyrin repeats

Probab=97.01  E-value=0.0013  Score=35.41  Aligned_cols=27  Identities=44%  Similarity=0.765  Sum_probs=14.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHhCCCCC
Q 022566          200 GATPLHYAVQVGAMQSVKLLIKYNVDV  226 (295)
Q Consensus       200 g~tpLh~A~~~g~~~~v~~Ll~~ga~i  226 (295)
                      |.||+|+|+..++.+++++|+..|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555554433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.42  E-value=0.1  Score=44.02  Aligned_cols=113  Identities=19%  Similarity=0.170  Sum_probs=78.0

Q ss_pred             HHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCC----CCChHHHHHHH--
Q 022566          136 LLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK----DGATPLHYAVQ--  209 (295)
Q Consensus       136 l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~----~g~tpLh~A~~--  209 (295)
                      +-.||...+.+++..++...         ..-.+++.+++.++..+++-+|+.+= .....|.    .+.--+-|+..  
T Consensus       157 ledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhc
Confidence            55677777777776665321         12346888888888899999988741 1222221    12334445443  


Q ss_pred             hCCHHHHHHHHhCC-CCCccc---CCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 022566          210 VGAMQSVKLLIKYN-VDVNVA---DNEGWTPLHIAIQSRNRDIAKVLLINGAD  258 (295)
Q Consensus       210 ~g~~~~v~~Ll~~g-a~in~~---d~~g~TpLh~A~~~g~~~iv~~Ll~~gad  258 (295)
                      .-+..++++++++| +++|.+   -+.|.|-|.-|+++++.+++.+||++||-
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            34678899999987 566643   45799999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.63  E-value=0.83  Score=37.47  Aligned_cols=141  Identities=9%  Similarity=-0.051  Sum_probs=92.2

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  209 (295)
                      ..+.--+.+|+..+..+.++..-....+.     -...++.+-.||...+.++|+|+-+.-.-.+     -.+..-.|..
T Consensus        44 c~~~CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qnL~i~~-----~~~iFdIA~~  113 (192)
T PF03158_consen   44 CDMWCLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQNLHIYN-----PEDIFDIAFA  113 (192)
T ss_pred             CCHHHHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhccCCCC-----chhhhhhhhh
Confidence            34555678888888888877765543321     1234577889999999999999944321111     2244567777


Q ss_pred             hCCHHHH----HHHHhCCCCCcccCC--CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChH
Q 022566          210 VGAMQSV----KLLIKYNVDVNVADN--EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY  283 (295)
Q Consensus       210 ~g~~~~v----~~Ll~~ga~in~~d~--~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~  283 (295)
                      ..+..+.    .+++.+...-...|.  --..-|.+|+..|....+.-.+++|.+++.      ++|..|+.++|    .
T Consensus       114 ~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynh----R  183 (192)
T PF03158_consen  114 KKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNH----R  183 (192)
T ss_pred             ccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhH----H
Confidence            7766652    233333221111111  111457889999999999999999988864      79999999998    7


Q ss_pred             HHHHHhh
Q 022566          284 DLAKLLK  290 (295)
Q Consensus       284 ~iv~~L~  290 (295)
                      .|+.++.
T Consensus       184 kIL~yfi  190 (192)
T PF03158_consen  184 KILDYFI  190 (192)
T ss_pred             HHHHHhh
Confidence            8887764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.10  E-value=0.68  Score=32.26  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=20.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhC
Q 022566          170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY  222 (295)
Q Consensus       170 ~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~  222 (295)
                      .+..|+..|+.++++.+++.+ .++      ...+..|+...+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            344455555555555444433 111      2234455555555555554443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.43  E-value=0.85  Score=31.75  Aligned_cols=47  Identities=32%  Similarity=0.434  Sum_probs=38.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Q 022566          202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN  255 (295)
Q Consensus       202 tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  255 (295)
                      ..+..|+.+|+.++++.+++.+ .++      ...+..|+..-+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            5678999999999999998765 222      4679999999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]

Probab=88.56  E-value=0.027  Score=49.76  Aligned_cols=48  Identities=6%  Similarity=-0.175  Sum_probs=34.1

Q ss_pred             cceecCCCCcccccccceeEeeeccCcccceeecc---cchheeehhhhhh
Q 022566           16 TFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTD---KQLIKVRFCAVES   63 (295)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s   63 (295)
                      .+.+|+++|-|.|.||+|||||.+.-+-...+..+   +|.+...-....-
T Consensus       111 ~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l~~~Pf~~~e~~~~Lv  161 (310)
T KOG1161|consen  111 LLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRLLHQPFFTTEQLFRLV  161 (310)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHHHhCCCchhhhHHHHH
Confidence            35589999999999999999998886555554444   6665444333333

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=84.96  E-value=4  Score=34.76  Aligned_cols=112  Identities=13%  Similarity=0.201  Sum_probs=73.2

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccC----CCCChHHHHHHH--cC
Q 022566          171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD----NEGWTPLHIAIQ--SR  244 (295)
Q Consensus       171 Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d----~~g~TpLh~A~~--~g  244 (295)
                      |--|+...+.+-+.-++...-       ...++|-+|+..+..+++-+|+.. -.+...|    ..+.--+.|+..  ..
T Consensus       157 ledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCC
Confidence            334555555555444443221       235788888888899999999875 1121222    123334555543  34


Q ss_pred             CHHHHHHHHHcCC-CCC---CCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          245 NRDIAKVLLINGA-DKS---RKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       245 ~~~iv~~Ll~~ga-d~~---~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      +..++++++.+|- ++|   .+-+.|.|-|.-|++++.    -+++.+|+...+
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~----~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKN----SEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCc----HHHHHHHHHcCc
Confidence            5778999999874 555   456789999999999997    899999987654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-15
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-15
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-15
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-14
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-14
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-14
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-14
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-14
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-14
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-14
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-14
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-14
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		8e-14
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-14
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-13
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-13
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		7e-13
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		9e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-11
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-11
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-11
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-10
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		6e-10
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-10
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-09
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		3e-09
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-09
1uoh_A	226	Human Gankyrin Length = 226		1e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		3e-08
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-08
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-08
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		5e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		5e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		8e-08
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		6e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		7e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		8e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-06
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-06
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		3e-06
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		4e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		6e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		9e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		9e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-05
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		1e-05
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		5e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		6e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		6e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		6e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		6e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		8e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		9e-05
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		5e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		6e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		7e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		8e-04

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++++D+DG TPLH A Q+G ++ V++L+KY  DVN  DN G TPLH+A    + +I +VL
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           W PL        +            +++ D  G TPLH A + G ++ V++L+K   DVN
Sbjct: 48  WTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
            +D+ G+TPLH+A +  + +I +VLL NGAD + + K GKTA D+S+  G +    DLA+
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE----DLAE 163
Query: 288 LLKIL 292
           +L+ L
Sbjct: 164 ILQKL 168

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           + PL        +            +++ DKDG TPLH A + G ++ V++L+K   DVN
Sbjct: 48  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
             D +G+TPLH+A +  + +I +VLL  GAD + + K GKTA D+S+  G +    DLA+
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE----DLAE 163
Query: 288 LLK 290
           +L+
Sbjct: 164 ILQ 166

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 4/128 (3%)
Query: 165 TAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV 224
            + W PL     +  +            +++VD  G TPL  A   G ++ V++L+K   
Sbjct: 45  ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD 284
           DVN  D EG TPLH+A    + +I +VLL NGAD + + K GKTA D+S+  G +    D
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE----D 160
Query: 285 LAKLLKIL 292
           LA++L+ L
Sbjct: 161 LAEILQKL 168

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
           NAT N G      + PL     +  +            +++ D  G TPLH A   G ++
Sbjct: 41  NATDNDG------YTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLE 94
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
            V++L+K+  DVN  DN+G TPLH+A +  + +I +VLL +GAD + + K GKTA D+S+
Sbjct: 95  IVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 275 CYGRDFKSYDLAKLLK 290
             G +    DLA++L+
Sbjct: 155 DNGNE----DLAEILQ 166

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ DK G TPLH A   G ++ V++L+KY  DVN  D +G+TPLH+A +  + +I +VL
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L  GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ D DG TPLHYA + G  + VKLLI    DVN  D++G TPLH A +  +++I K+L
Sbjct: 63  VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
           +  GAD +    DG+T LD++  +G +    ++ KLL+
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNE----EIVKLLE 156

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
           NA  N G        PL    +S  +            +D+ D  G TPLH A   G ++
Sbjct: 41  NAVDNTG------LTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLE 94
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
            V++L+KY  DVN  D  G TPLH+A    + +I +VLL  GAD + + K GKTA D+S+
Sbjct: 95  IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 275 CYGRDFKSYDLAK 287
             G +    DLAK
Sbjct: 155 DNGNE----DLAK 163

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 4/98 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++VD +G TPLH A  +G ++ V++L+KY  DVN  D  G TPL++A    + +I +VL
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
           L +GAD + + K GKTA D+S+    D  + DLA++L+
Sbjct: 121 LKHGADVNAQDKFGKTAFDISI----DIGNEDLAEILQ 154

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           + PL        +            +++ DKDG TPLH A + G ++ V++L+K   DVN
Sbjct: 36  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
             D +G+TPLH+A +  + +I +VLL  GAD + + K GKT  D+++  G +    D+A+
Sbjct: 96  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE----DIAE 151
Query: 288 LLK 290
           +L+
Sbjct: 152 VLQ 154

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 53/83 (63%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D DG TPLHYA + G  + VKLL+    D N  D++G TPLH A ++ +++I K+LL  G
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 126
Query: 257 ADKSRKTKDGKTALDMSLCYGRD 279
           AD +    DG+T LD++  +G +
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNE 149

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
           NA+ ++G      W PL        +            +++ D  G TPLH A   G ++
Sbjct: 41  NASDHVG------WTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLE 94
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
            V++L+K   DVN  D+ G+TPLH+A    + +I +VLL +GAD + + K GKTA D+S+
Sbjct: 95  VVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 275 CYGRDFKSYDLAKLLKIL 292
             G +    DLA++L+ L
Sbjct: 155 DNGNE----DLAEILQKL 168

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 57/87 (65%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ D DG TPLH+A + G  + VKLLI    DVN  D++G TPLH A ++ ++++ K+L
Sbjct: 63  VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRD 279
           +  GAD +    DG+T LD++  +G +
Sbjct: 123 ISKGADVNTSDSDGRTPLDLAREHGNE 149

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ D  GATPLH A   G ++ V++L+K+  DVN  D EG+TPLH+A    + +I +VL
Sbjct: 73  VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L  GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 4/121 (3%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA 229
           PL     + Q+            +++ D  G TPLH A   G ++ V++L+K+  DVN  
Sbjct: 42  PLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 230 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           D  GWTPLH+A  S   +I +VLL +GAD + +   G TA D+S+  G++    DLA++L
Sbjct: 102 DRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQE----DLAEIL 157
Query: 290 K 290
           +
Sbjct: 158 Q 158

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ D DG TPLH A   G ++ V++L+KY  DVN  D  G TPLH+A    + +I +VL
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           + PL        +            +++ DKDG TPLH A + G ++ V++L+K   DVN
Sbjct: 36  YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
             D +G+TPLH+A +  + +I +VLL  GAD + + K GKT  D+++  G +    D+A+
Sbjct: 96  AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE----DIAE 151
Query: 288 LLK 290
           +L+
Sbjct: 152 VLQ 154

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 168 WRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           W PL        +            +++ D  G+TPLH A   G ++ V++L+K   DVN
Sbjct: 48  WTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
             D+ G TPLH+A    + +I +VLL  GAD + + K GKTA D+S+  G +    DLA+
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNE----DLAE 163
Query: 288 LLKIL 292
           +L+ L
Sbjct: 164 ILQKL 168

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 4/98 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++++D  G+TPLH A + G ++ V++L+KY  DVN  D  G TPLH+A  + + +I +VL
Sbjct: 73  VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
           L  GAD + + K GKTA D+S+  G +    DLA++L+
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQ 166

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA 229
           PL    +   +            +++ DK G TPLH A   G ++ V++L+K   DVN  
Sbjct: 50  PLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Query: 230 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           D  G+TPLH+A  + + +I +VLL  GAD + + K GKTA D+S+  G +    DLA++L
Sbjct: 110 DTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE----DLAEIL 165
Query: 290 KIL 292
           + L
Sbjct: 166 QKL 168

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++++D  G+TPLH A  +G ++ V++L+K+  DVN  D  G TPLH+A    + +I +VL
Sbjct: 73  VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ D DG TPLH A + G  + VKLL+    D N  D++G TPLH+A ++ ++++ K+L
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
           L  GAD + K  DGKT L ++   G 
Sbjct: 90  LSQGADPNAKDSDGKTPLHLAAENGH 115

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ D+ G TPLH A     ++ V++L+K+  DVN  DN+G TPLH+A    + +I +VL
Sbjct: 40  VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++++D  G+TPLH A  +G ++ V++L+K+  DVN  D  G TPLH+A    + +I +VL
Sbjct: 73  VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 133 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 168

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 66/100 (66%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++++D  G TPLH A + G ++ V++L+K+  DVN +D+ G TPLH+A    + +I +VL
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L  GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 10/138 (7%)
Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQ 214
           NA  N G        PL     S  +            +D+ D  G TPLH A   G ++
Sbjct: 41  NAADNTGTT------PLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLE 94
Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
            V++L+K   DVN  D++G TPLH+A +    +I +VLL +GAD + + K GKTA D+S+
Sbjct: 95  IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 275 CYGRDFKSYDLAKLLKIL 292
             G +    DLA++L+ L
Sbjct: 155 DNGNE----DLAEILQKL 168

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ DK+G TPLH A + G ++ VKLL++   DVN  D  G TPLH+A ++ + ++ K+L
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
           L  GAD + K K+G+T L ++   G
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNG 112

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++++D  G TPLH A + G ++ V++L+K+  DVN +D  G TPLH+A    + +I +VL
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L  GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
           G TPLH A  +G ++ V++L+K   DVN   N G TPLH+A  + + +I +VLL +GAD 
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 260 SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 107 NAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++++D  G TPLH A + G ++ V++L+K+  DVN  D  G TPLH+A    + +I +VL
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L  GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 100 LEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ D+ G TPL+ A   G ++ V++L+K   DVN  D  G+TPLH+A    + +IA+VL
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNE----DLAEILQKL 135

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           +G TPLH A + G ++ VKLL++   DVN  D  G TPLH+A ++ + ++ K+LL  GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 259 KSRKTKDGKTALDMS 273
            + K K+G+T L ++
Sbjct: 61  VNAKDKNGRTPLHLA 75

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ DK G TPLH A     ++ V++L+K   DVN  D  G TPLH+     + +I +VL
Sbjct: 40  VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           L +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           + + DK G  PLH A   G  +  +LL+K+   VNVAD   +TPLH A      +I K+L
Sbjct: 70  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 129
Query: 253 LINGADKSRKTKDGKTALDM 272
           L +GAD ++K +DG T LD+
Sbjct: 130 LQHGADPTKKNRDGNTPLDL 149

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           + + DK G  PLH A   G  +  +LL+K+   VNVAD   +TPLH A      +I K+L
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127
Query: 253 LINGADKSRKTKDGKTALDM 272
           L +GAD ++K +DG T LD+
Sbjct: 128 LQHGADPTKKNRDGNTPLDL 147

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           + + DK G  PLH A   G  +  +LL+K+   VNVAD   +TPLH A      +I K+L
Sbjct: 72  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 131
Query: 253 LINGADKSRKTKDGKTALDM 272
           L +GAD ++K +DG T LD+
Sbjct: 132 LQHGADPTKKNRDGNTPLDL 151

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
           KDG TPLH A + G  + VK L+    DVN    +G TPLH+A ++ + +I K+LL  GA
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           D + ++KDG T   ++   G     +++ KLL
Sbjct: 67  DVNARSKDGNTPEHLAKKNGH----HEIVKLL 94

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 153 NQNATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGA 212
           ++ A  NLG  S     PL  +     +            +D+  + G TPLH A   G 
Sbjct: 266 SKQANGNLGNKS--GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 323
Query: 213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 272
           ++ VK L+++  DVN     G++PLH A Q  + DI  +LL NGA  +  + DG T L +
Sbjct: 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAI 383
Query: 273 S 273
           +
Sbjct: 384 A 384

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
           TPLH A  +G +  VK L++     NV++ +  TPLH+A ++ + ++AK LL N A  + 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 262 KTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           K KD +T L    C  R     ++ KLL
Sbjct: 76  KAKDDQTPLH---CAAR-IGHTNMVKLL 99

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           + +G T LH AV  G  + VK L+++ V+VN AD++GWTPLH A    N  + K L+ +G
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 257 ADKSRKT-KDGKTALD 271
           A     T  D +TA D
Sbjct: 127 AAVFAMTYSDMQTAAD 142

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           + +G T LH AV  G  + VK L+++ V+VN AD++GWTPLH A    N  + K L+ +G
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Query: 257 ADKSRKT-KDGKTALD 271
           A     T  D +TA D
Sbjct: 127 AAVFAMTYSDMQTAAD 142

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++  D  G +PLH A   G  + VK L+     VN  +  G TPLH A      +IA +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
           L  GA+   K     TA+  +   G
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKG 150

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
           K G T LH A   G  + +KLLI+   DVN+ D +GWTPLH A      +  ++L+ N  
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 258 DKSRKTKDGKTALDMS 273
           D     K G+TA D++
Sbjct: 257 DMEAVNKVGQTAFDVA 272

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 39/85 (45%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++  D  G +PLH A   G  + VK L+     VN  +  G TPLH A      +IA +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 253 LINGADKSRKTKDGKTALDMSLCYG 277
           L  GA+   K     TA+  +   G
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKG 150

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 153 NQNATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGA 212
           N N   + G+ ST    PL       ++R           + + DK G  PLH A   G 
Sbjct: 48  NVNCHASDGRKST----PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103
Query: 213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 272
            +  +LL+K+   VN  D   +TPLH A      ++  +LL +GAD +     GK+A+DM
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Query: 273 S--------LCYGRDFKSY---------DLAKLLKILPVE 295
           +        L Y  +FK +         DLAK+ K L +E
Sbjct: 164 APTPELRERLTY--EFKGHSLLQAAREADLAKVKKTLALE 201

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
           A + G    V++L+    DVN  D +G+TPLH+A +  + +I +VLL  GAD + + K G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 267 KTALDMSLCYGRDFKSYDLAKLLK 290
           KTA D+S+  G +    DLA++L+
Sbjct: 69  KTAFDISIDNGNE----DLAEILQ 88

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D+D  T LH+A   G  + V+ L++  V VN  D+ GW+PLHIA  +   +I K LL  G
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           A  +   ++G T L     Y      +++A +L
Sbjct: 97  AQVNAVNQNGCTPLH----YAASKNRHEIAVML 125

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D+D  T LH+A   G  + V+ L++  V VN  D+ GW+PLHIA  +   +I K LL  G
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           A  +   ++G T L     Y      +++A +L
Sbjct: 98  AQVNAVNQNGCTPLH----YAASKNRHEIAVML 126

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D  G +P+H A + G + ++K+L+++  DVNV D  G  P+H+A+Q  +  +   L    
Sbjct: 71  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 129
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
           +D  R+   G T L+++L  G    + DL  +L+
Sbjct: 130 SDLHRRDARGLTPLELALQRG----AQDLVDILQ 159

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D  G +P+H A + G + ++K+L+++  DVNV D  G  P+H+A+Q  +  +   L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE- 123
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
           +D  R+   G T L+++L  G    + DL  +L+
Sbjct: 124 SDLHRRDARGLTPLELALQRG----AQDLVDILQ 153

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
           D  D+ G   +H A + G + +++ L+++  DVN+ DNEG  PLH+A +  +  + + L+
Sbjct: 64  DLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
            + A     +   G TA D++  YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
           TPLH A   G    V++L+K+  DVN  D    T LH A +  ++++ ++L+  GAD   
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128
Query: 262 KTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
           ++K  KTA D+S+  G +    DLA++L+
Sbjct: 129 QSKFCKTAFDISIDNGNE----DLAEILQ 153

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
           D  D+ G   +H A + G + +++ L+++  DVN+ DNEG  PLH+A +  +  + + L+
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
            + A     +   G TA D++  YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
           D  D+ G   +H A + G + +++ L+++  DVN+ DNEG  PLH+A +  +  + + L+
Sbjct: 64  DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
            + A     +   G TA D++  YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
           D  D+ G   +H A + G + +++ L+++  DVN+ DNEG  PLH+A +  +  + + L+
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
            + A     +   G TA D++  YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
           G  PLHYA   G ++ ++ L+    D+N  D    TPL  A+   +    K+LL  GADK
Sbjct: 35  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 260 SRKTKDGKTALDMS 273
           + K  DG TAL+ +
Sbjct: 95  TVKGPDGLTALEAT 108

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
           G  PLHYA   G ++ ++ L+    D+N  D    TPL  A+   +    K+LL  GADK
Sbjct: 40  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 260 SRKTKDGKTALDMS 273
           + K  DG TA + +
Sbjct: 100 TVKGPDGLTAFEAT 113

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
           A + G    V++L+    DV   D  G TPLH+A ++ + ++ K+LL  GAD + + K G
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 267 KTALDMSLCYGRDFKSYDLAKLLK 290
           KTA D+S+  G +    DLA++L+
Sbjct: 73  KTAFDISIDNGNE----DLAEILQ 92

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
           A + G    V++L+    DV   D  G TPLH+A ++ + ++ K+LL  GAD   + K G
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 267 KTALDMSLCYGRDFKSYDLAKLLK 290
           KTA D+S+  G +    DLA++L+
Sbjct: 91  KTAFDISIDNGNE----DLAEILQ 110

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
           D  D+ G   +H A + G + +++ L++   DVN+ DNEG  PLH+A +  +  + + L+
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
Query: 254 INGADK-SRKTKDGKTALDMSLCYGRD 279
            + A     +   G TA D++  YGR+
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++  D  G +PLH+A + G    V++LI     +NV +    TPLH+A    +RDI + L
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
           L   AD +   + G   L  +  +G+D  + DL
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 56/97 (57%), Gaps = 6/97 (6%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D  G TPL YA   G  + V LL+++   +N ++N+G T LH A+  ++  + ++LL++G
Sbjct: 149 DLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 293
           A      K  +TA+D   C  ++ K   + +LL+++P
Sbjct: 209 ASVQVLNKRQRTAVD---CAEQNSK---IMELLQVVP 239

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++  D  G +PLH+A + G    V++LI     +NV +    TPLH+A    +RDI + L
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 285
           L   AD +   + G   L  +  +G+D  + DL
Sbjct: 87  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
            D+ GAT LH A       + K L++ + D N+ DN G TPLH A+ +  + + ++L+ N
Sbjct: 53  TDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 256 GA-DKSRKTKDGKTAL 270
            A D   +  DG T L
Sbjct: 113 RATDLDARMHDGTTPL 128

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKV 251
           +++ + DG TPLH AV     + V+LL     D+N  +   G TPLH+A++++   + ++
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 252 LLINGADKSRKTKDGKTALDMSL 274
           LL  GAD + +   G+T L  +L
Sbjct: 211 LLKAGADPTARMYGGRTPLGSAL 233

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKV 251
           +++ + DG TPLH AV     + V+LL     D+N  +   G TPLH+A++++   + ++
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 252 LLINGADKSRKTKDGKTALDMSL 274
           LL  GAD + +   G+T L  +L
Sbjct: 211 LLKAGADPTARMYGGRTPLGSAL 233

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 156 ATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGATPLHYAVQVGAMQS 215
           A  N+   S  +  PL     +  +            +D  D +G+T LH A + G  + 
Sbjct: 33  AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
Query: 216 VK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           V+ LL    +DVN  D+ GWTP+  A + ++ D+ K+LL  G+D
Sbjct: 93  VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
            D+ G T LH A +     + K L++ + D N+ DN G TPLH A+ +  + + ++L+ N
Sbjct: 53  TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 256 GA-DKSRKTKDGKTAL 270
            A D   +  DG T L
Sbjct: 113 RATDLDARMHDGTTPL 128

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
            D+ G T LH A +     + K L++ + D N+ DN G TPLH A+ +  + + ++L+ N
Sbjct: 54  TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 113
Query: 256 GA-DKSRKTKDGKTAL 270
            A D   +  DG T L
Sbjct: 114 RATDLDARMHDGTTPL 129

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
            D+ G T LH A +     + K L++ + D N+ DN G TPLH A+ +  + + ++L+ N
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 256 GA-DKSRKTKDGKTAL 270
            A D   +  DG T L
Sbjct: 81  RATDLDARMHDGTTPL 96

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D  G +P+H A + G + ++K+L+++  DVN  D+ G  P+H+AI+  +  +   L    
Sbjct: 73  DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 131
Query: 257 ADKSRKTKDGKTALDMS 273
           +D   +   G T L+++
Sbjct: 132 SDLHHRDASGLTPLELA 148

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D  G +P+H A + G + ++K+L+++  DVN  D+ G  P+H+AI+  +  +   L    
Sbjct: 71  DASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE- 129
Query: 257 ADKSRKTKDGKTALDMS 273
           +D   +   G T L+++
Sbjct: 130 SDLHHRDASGLTPLELA 146

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
           + L  A   G    VK+L+   VDVN  D  G TPL  A+   +    K+LL +GAD + 
Sbjct: 87  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 146
Query: 262 KTKDGKTALDMSLCYG-RDFKSYDLAKLLKIL 292
           +T  G  ++D+++  G R  +    + LLK+L
Sbjct: 147 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 178

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
           + L  A   G    VK+L+   VDVN  D  G TPL  A+   +    K+LL +GAD + 
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130
Query: 262 KTKDGKTALDMSLCYG-RDFKSYDLAKLLKIL 292
           +T  G  ++D+++  G R  +    + LLK+L
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
           + L  A   G    VK+L+   VDVN  D  G TPL  A+   +    K+LL +GAD + 
Sbjct: 69  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 128
Query: 262 KTKDGKTALDMSLCYG-RDFKSYDLAKLLKIL 292
           +T  G  ++D+++  G R  +    + LLK+L
Sbjct: 129 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 160

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
           + + + +G T LH A   G +  V+LL+    DVN  +   G T LH+A+  +N D+  +
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 252 LLINGADKSRKTKDGKTALDMSLCYGR 278
           LL  GAD +R T  G +   ++  +GR
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLT--WGR 194

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
           + + + +G T LH A   G +  V+LL+    DVN  +   G T LH+A+  +N D+  +
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 252 LLINGADKSRKTKDGKTALDMSLCYGR 278
           LL  GAD +R T  G +   ++  +GR
Sbjct: 167 LLKCGADVNRVTYQGYSPYQLT--WGR 191

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           +++G T LH A+       V  LI    +VN  D+ GWTPLH A    +  I   L+ +G
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHG 110
Query: 257 ADKSRKT-KDGKTALD 271
           A     T  DG TA +
Sbjct: 111 AAIFATTLSDGATAFE 126

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
            D+ G T LH A +     + K L++ + D  + DN G TPLH A+ +  + + ++LL N
Sbjct: 18  TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 256 GA-DKSRKTKDGKTAL 270
            A D   +  DG T L
Sbjct: 78  RATDLDARMHDGTTPL 93

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 193 IDSVDKDGATPLHYAV-QVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAK 250
           +D +D++G TPL +A  +  ++   +LL+ +NV VN+ D     T LH A+ + N  +  
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 251 VLLINGADKSRKTKDGKTALDMS 273
           +LL  GA+   +   G++ALD++
Sbjct: 195 LLLEAGANVDAQNIKGESALDLA 217

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--DVNVADNEGWTPLHIAIQSRNRDIAKV 251
           D  D  G TP H A  VG ++ VK L    +  D+N   N+G T LH+A+  +  ++++ 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 252 LLINGADKSRKTKDGKTALDMSLCYG 277
           L+ NGA    K K  +  L  +   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVG 151

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--DVNVADNEGWTPLHIAIQSRNRDIAKV 251
           D  D  G TP H A  VG ++ VK L    +  D+N   N+G T LH+A+  +  ++++ 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 252 LLINGADKSRKTKDGKTALDMSLCYG 277
           L+ NGA    K K  +  L  +   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVG 151

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 194 DSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--DVNVADNEGWTPLHIAIQSRNRDIAKV 251
           D  D  G TP H A  VG ++ VK L    +  D+N   N+G T LH+A+  +  ++++ 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 252 LLINGADKSRKTKDGKTALDMSLCYG 277
           L+ NGA    K K  +  L  +   G
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVG 151

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
           K+  + L  A   G    V LL++ +VD+N+ D  G TPL  A++  +    + LL  GA
Sbjct: 67  KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126
Query: 258 DKSRKTKDGKTALDMSLCYG 277
           D + +   G T +D+++  G
Sbjct: 127 DLTTEADSGYTPMDLAVALG 146

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
            DG TPL  A ++     V+ LI  + D+N ADN G T LH A    N +   +LL++ A
Sbjct: 116 HDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA 175
Query: 258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           ++  +    +T L ++   G    SY+ +K L
Sbjct: 176 NRDAQDDKDETPLFLAAREG----SYEASKAL 203

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
           K+  + L  A   G    V LL++ +VD+N+ D  G TPL  A+   +    + LL  GA
Sbjct: 67  KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGA 126
Query: 258 DKSRKTKDGKTALDMSLCYG 277
           D + +   G T +D+++  G
Sbjct: 127 DLTTEADSGYTPMDLAVALG 146

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++  D  G  PLH+A  +G      L +K   D+   D+EG  PL IA+++ N DI  +L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++  D  G  PLH+A  +G      L +K   D+   D+EG  PL IA+++ N DI  +L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++  D  G  PLH+A  +G      L +K   D+   D+EG  PL IA+++ N DI  +L
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           D  G TPLH A   G ++ V+LL+++   VN    +  +PLH A ++ + DI K+LL  G
Sbjct: 40  DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 257 ADKS 260
           A ++
Sbjct: 100 ASRN 103

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +++ D  G TPL +++  G  +    L+++  +VN  + EG TPL +A +    +I K L
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
           L  GAD S +   G TA   +  +GR
Sbjct: 154 LELGADISARDLTGLTAEASARIFGR 179

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           + D A+P+H A + G ++ V  LI Y  +++   +   TPL++A +++ R   K LL +G
Sbjct: 98  ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 257 ADKSR-KTKD------GKTALDMSLCYGRDFKSYDLAK 287
           AD ++ K +D       +TA +   C   DF +   AK
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAK 195

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKY----NVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           D+DG TPLH AV  G + +V  L+        ++++ +N   TPLH+A+ +    + ++L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 253 LINGADKSRKTKDGKTALDMSLCYGR 278
           +  GA      + G+TA  ++ C  R
Sbjct: 66  VTAGASPMALDRHGQTAAHLA-CEHR 90

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
           +D+VD++G T L +   +G+ + V+LL +   D++  D   G T LH+A      ++ + 
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 252 LLINGADKSRKTKDGKTALDMS 273
           L+  GAD   + + G TAL+++
Sbjct: 129 LVELGADIEVEDERGLTALELA 150

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           + D A+P+H A + G ++ V  LI Y  +++   +   TPL++A +++ R   K LL +G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 257 ADKSR-KTKDG------KTALDMSLCYGRDFKSYDLAK 287
           AD ++ K +D       +TA +   C   DF +   AK
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 200 GATPLHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRN-----RDIAKVLL 253
           G   L  A + G + +VKLL++    D++  ++ G+T L  A+  R      +DI K+L+
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165
Query: 254 INGADKSRKTKDGKTALDMS 273
            NGAD+S K   G+TA+D +
Sbjct: 166 ENGADQSIKDNSGRTAMDYA 185

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV 251
           +D+VD++G T L +   +G+ + V+LL +   D++  D   G T LH+A      ++ + 
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 252 LLINGADKSRKTKDGKTALDMS 273
           L+  GAD   + + G TAL+++
Sbjct: 130 LVELGADIEVEDERGLTALELA 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-33
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-27
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-23
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	9e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-30
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-27
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-31
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-27
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-31
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-31
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-30
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-30
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-26
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-29
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-25
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-27
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-26
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-26
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-28
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-27
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-27
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-22
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-27
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-25
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-27
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-23
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-25
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-26
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-25
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-26
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-26
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-25
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-24
2rfa_A	232	Transient receptor potential cation channel subfa	2e-24
2rfa_A	232	Transient receptor potential cation channel subfa	1e-22
2rfa_A	232	Transient receptor potential cation channel subfa	7e-22
2rfa_A	232	Transient receptor potential cation channel subfa	1e-20
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-24
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-10
2pnn_A	273	Transient receptor potential cation channel subfa	3e-19
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	9e-17
2pnn_A	273	Transient receptor potential cation channel subfa	4e-15
2pnn_A	273	Transient receptor potential cation channel subfa	6e-11
2pnn_A	273	Transient receptor potential cation channel subfa	6e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-18
2etb_A	256	Transient receptor potential cation channel subfam	9e-18
2etb_A	256	Transient receptor potential cation channel subfam	2e-16
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  118 bits (298), Expect = 3e-33
 Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL  G+  D+  K   TPLH A   G    V++L+K+  DVN  D    T LH A +  
Sbjct: 52  VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN 111

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
           ++++ ++L+  GAD   ++K  KTA D+S+  G    + DLA++L+
Sbjct: 112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNG----NEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  103 bits (260), Expect = 1e-27
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +L+  G      D  G +PLH A Q G   + ++L++  V  +       TPLH+A    
Sbjct: 20  ILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + +I +VLL +GAD + K     TAL  +  +       ++ +LL
Sbjct: 79  HANIVEVLLKHGADVNAKDMLKMTALHWATEHN----HQEVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.4 bits (236), Expect = 4e-24
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           D    L  A + G    V++L+         D  G +PLH+A Q  +    +VLL  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +  +TK  +T L M+   G      ++ ++L
Sbjct: 60  RDARTKVDRTPLHMAASEG----HANIVEVL 86

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (296), Expect = 2e-32
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           ML+  G  I+ +++   TPLH A   G    V+ L++Y  D+N  +  G  PLH A    
Sbjct: 57  MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              +A+ L+ NGA  S   K G+  +D +    R+     L +  
Sbjct: 117 QDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE----LLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  108 bits (273), Expect = 3e-29
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 5/106 (4%)

Query: 185 MLLD-GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           + LD    D++  D  G +PLH+A + G    V++LI     +NV +    TPLH+A   
Sbjct: 23  LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +RDI + LL   AD +   + G   L  +  +G+D     +A+ L
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD----QVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 95.2 bits (238), Expect = 4e-24
 Identities = 20/78 (25%), Positives = 34/78 (43%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL    DI++V++ G  PLHYA   G  Q  + L+     V++ +  G  P+  A    
Sbjct: 90  KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL 149

Query: 245 NRDIAKVLLINGADKSRK 262
              + +     G + +R 
Sbjct: 150 RELLRERAEKMGQNLNRI 167

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 94.0 bits (235), Expect = 1e-23
 Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
             +    +    + G   +V+L +     D+N  D+ G++PLH A +     + ++L++ 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 256 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           GA  +   +   T L ++  +G      D+ + L
Sbjct: 62  GARINVMNRGDDTPLHLAASHG----HRDIVQKL 91

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 229 ADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
              E    +    +  N    ++ L N   D ++    G + L  +   GR      + +
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS----AVVE 56

Query: 288 LL 289
           +L
Sbjct: 57  ML 58

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 53.2 bits (129), Expect = 8e-09
 Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 6/57 (10%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           L+  G  +   +K G  P+  A         +   K   ++N        P      
Sbjct: 124 LVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTFW 174

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  115 bits (290), Expect = 5e-32
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL  G   +  D  G +P+H A + G + ++K+L+++  DVNV D  G  P+H+A+Q  
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +  +    L   +D  R+   G T L+++L  G    + DL  +L
Sbjct: 113 HTAVVS-FLAAESDLHRRDARGLTPLELALQRG----AQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (264), Expect = 3e-28
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L    +  D++++ G T L   +  G+      L+K     NV D  G +P+H A ++  
Sbjct: 22  LHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            D  KVL+ +GAD +     G   + +++  G       +   L
Sbjct: 81  LDTLKVLVEHGADVNVPDGTGALPIHLAVQEG----HTAVVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 86.3 bits (215), Expect = 5e-21
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +L++ G D++  D  GA P+H AVQ G    V  L     D++  D  G TPL +A+Q  
Sbjct: 86  VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRG 144

Query: 245 NRDIAKVLL 253
            +D+  +L 
Sbjct: 145 AQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.4 bits (210), Expect = 3e-20
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 200 GATPLHYAVQVGAMQSVK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
               L  A   G +Q V+ LL +  V  +  +  G T L +     +  IA  LL  GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGAS 60

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            + +   G + +  +   G      D  K+L
Sbjct: 61  PNVQDTSGTSPVHDAARTG----FLDTLKVL 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.3 bits (106), Expect = 6e-06
 Identities = 13/36 (36%), Positives = 16/36 (44%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIK 221
            L    D+   D  G TPL  A+Q GA   V +L  
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  121 bits (306), Expect = 8e-32
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 4/110 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
            D+L+  G+ +D+  + G TPLH A   G ++ VK L+++  DVN     G++PLH A Q
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
             + DI  +LL NGA  +  + DG T L ++   G       +  +LK++
Sbjct: 354 QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG----YISVTDVLKVV 399

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (291), Expect = 1e-29
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL  G    S   +G TPLH A +   ++  + L++Y    N    +G TPLH+A Q  
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 256

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + ++  +LL   A+ +   K G T L +    G       +A +L
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH----VPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (290), Expect = 2e-29
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 4/107 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
              LL     +++  KD  TPLH A ++G    VKLL++ N + N+A   G TPLHIA +
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             + +    LL   A ++  TK G T L ++  YG+      +A+LL
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK----VRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  112 bits (282), Expect = 2e-28
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL    + +  +K G TPLH   Q G +    +LIK+ V V+     G+TPLH+A    
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 322

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           N  + K LL + AD + KTK G + L  +   G      D+  LL
Sbjct: 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH----TDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  112 bits (282), Expect = 2e-28
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 4/107 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
              LL  G   ++    G TPLH A Q G  + V LL+    + N+ +  G TPLH+  Q
Sbjct: 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             +  +A VL+ +G      T+ G T L ++  YG       L K L
Sbjct: 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN----IKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (281), Expect = 3e-28
 Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL+   + +     G TPLH A + G +++V  L++          +G+TPLH+A +   
Sbjct: 99  LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             +A++LL   A  +   K+G T L +++ +     + D+ KLL
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHN----NLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (279), Expect = 4e-28
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G   +  +    TPLH A + G  +  K L++    VN    +  TPLH A +  +
Sbjct: 33  LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            ++ K+LL N A+ +  T  G T L ++   G      +    L
Sbjct: 93  TNMVKLLLENNANPNLATTAGHTPLHIAAREG----HVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  111 bits (279), Expect = 4e-28
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL+     ++  K+G TPLH AV    +  VKLL+      +     G+TPLHIA +   
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            ++A+ LL  G   + ++  G T L ++   G      ++  LL
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEG----HAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (275), Expect = 2e-27
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL+       + K G TPLH A + G ++  +LL++ +   N A   G TPLH+A+   N
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 191

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            DI K+LL  G        +G T L ++          ++A+ L
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN----QVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (274), Expect = 3e-27
 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 249
           G+      + G TPLH A  +G +  VK L++     NV++ +  TPLH+A ++ + ++A
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 250 KVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           K LL N A  + K KD +T L  +   G      ++ KLL
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIG----HTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  102 bits (256), Expect = 8e-25
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL    D+++  K G +PLH A Q G    V LL+K     N   ++G TPL IA +   
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389

Query: 246 RDIAKVLLI---NGADKSRKTKDGKTALD 271
             +  VL +     +      K   +  +
Sbjct: 390 ISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 12/81 (14%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLL---IKYNVDVNVADNEGWTPLHIAIQ 242
           LL  G   + V  DG TPL  A ++G +    +L         V V+D    +       
Sbjct: 363 LLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---- 418

Query: 243 SRNRDIAKVLLINGADKSRKT 263
                    +L    D+  + 
Sbjct: 419 -----TVDEILDVSEDEGEEL 434

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  114 bits (289), Expect = 9e-32
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL  G D   + K   + L  A   G    VK+L+   VDVN  D  G TPL  A+   
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +    K+LL +GAD + +T  G  ++D+++  G       + +++
Sbjct: 114 HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR----SVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  110 bits (278), Expect = 4e-30
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
             ++    I+  D++G TPL +A   G +  V+ L++   D  +      + L +A    
Sbjct: 21  TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             DI K+LL  G D +    +G T L  ++            K+L
Sbjct: 81  YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN----HVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  103 bits (259), Expect = 3e-27
 Identities = 23/81 (28%), Positives = 44/81 (54%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           MLLD G+D++  D +G TPL YAV    ++ VK+L++   D  +  + G+  + +A+   
Sbjct: 87  MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146

Query: 245 NRDIAKVLLINGADKSRKTKD 265
            R + +V+  +     +  K+
Sbjct: 147 YRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 93.2 bits (233), Expect = 1e-23
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
             +  +H     G M  +   I+    +N  D EG+TPL  A       + + LL NGAD
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
                K  ++AL ++   G      D+ K+L
Sbjct: 62  PQLLGKGRESALSLACSKGY----TDIVKML 88

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  113 bits (286), Expect = 1e-31
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL  G D +  D  G TPLH A   G ++ V+LL+++   VN    +  +PLH A ++ 
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNG 87

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + DI K+LL  GA ++     G   +D +           L  L 
Sbjct: 88  HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK----SLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (256), Expect = 3e-27
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 5/100 (5%)

Query: 190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 249
           G+D  + +  G T LH A   G + SV+ L++   D NV D+ GWTPLH A    +  + 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 250 KVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           ++LL + A  +       + L  +   G      D+ KLL
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNG----HVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 88.6 bits (221), Expect = 4e-22
 Identities = 16/76 (21%), Positives = 31/76 (40%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL     +++      +PLH A + G +  VKLL+ Y    N  +  G  P+       
Sbjct: 61  LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

Query: 245 NRDIAKVLLINGADKS 260
            + +  +   N +  +
Sbjct: 121 MKSLLLLPEKNESSSA 136

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  113 bits (285), Expect = 4e-31
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL+ G D   + K+  + L  A   G    V LL++ +VD+N+ D  G TPL  A++  
Sbjct: 54  FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +    + LL  GAD + +   G T +D+++  G       + +++
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALG----YRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  107 bits (270), Expect = 8e-29
 Identities = 21/84 (25%), Positives = 42/84 (50%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL+  +DI+  D +G TPL YAV+   ++ V+ L+    D+    + G+TP+ +A+   
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

Query: 245 NRDIAKVLLINGADKSRKTKDGKT 268
            R + +V+  +     +       
Sbjct: 147 YRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  102 bits (257), Expect = 6e-27
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 185 MLLDGGLD-IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
             L  G + ++  D+ G TPL +A   G +++V+ L+++  D ++   E  + L +A   
Sbjct: 20  EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              DI  +LL    D +    +G T L  ++            + L
Sbjct: 80  GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV----KCVEAL 121

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.1 bits (217), Expect = 4e-21
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
            +  +H     G +  +K  ++   + VN  D  G+TPL  A      +  + LL  GAD
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
                K+ ++AL ++   G      D+  LL
Sbjct: 62  PHILAKERESALSLASTGG----YTDIVGLL 88

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 68.6 bits (169), Expect = 2e-14
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP 236
            LL  G D+ +    G TP+  AV +G  +  +++  + + +  ++     P
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (288), Expect = 5e-31
 Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            L++   D+++VD  G + LH+A  V  + +  +L+K   + ++ +N   TPL +A +  
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + + AKVLL + A++       +   D++         +D+ +LL
Sbjct: 170 SYETAKVLLDHFANRDITDHMDRLPRDIAQERM----HHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (288), Expect = 6e-31
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           + +   D+D+   DG TPL  A ++     ++ LI  + DVN  D+ G + LH A    N
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            D A VLL NGA+K  +    +T L ++   G    SY+ AK+L
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREG----SYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  101 bits (255), Expect = 5e-26
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 186 LLDGGLDI-DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            +  G  + +  D+ G T LH A +     + K L++ + D N+ DN G TPLH A+ + 
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69

Query: 245 NRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            + + ++L+ N A D   +  DG T L ++           + + L
Sbjct: 70  AQGVFQILIRNRATDLDARMHDGTTPLILAARLA----VEGMLEDL 111

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 93.6 bits (234), Expect = 4e-23
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G + D  +    TPL  A + G+ ++ K+L+ +  + ++ D+    P  IA +  +
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203

Query: 246 RDIAKVLLINGADKS 260
            DI ++L      +S
Sbjct: 204 HDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 231
           +LLD   + D  D     P   A +      V+LL +YN+  +   +
Sbjct: 176 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  112 bits (284), Expect = 6e-31
 Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL  G D+++VD  G TPL  A   G ++ V++L+K   DVN  D EG TPLH+A    
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + +I +VLL NGAD + + K GKTA D+S+  G    + DLA++L
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG----NEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  110 bits (278), Expect = 5e-30
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L+  G D+++ D  G TPLH A   G ++ V++L+K   DVN  D+ G TPL +A    +
Sbjct: 33  LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +I +VLL NGAD +    +G T L ++  +G      ++ ++L
Sbjct: 93  LEIVEVLLKNGADVNANDMEGHTPLHLAAMFG----HLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 96.3 bits (241), Expect = 1e-24
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
             D    L  A + G    V++L+    DVN  D  GWTPLH+A  + + +I +VLL NG
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           AD +     G T L ++  +G      ++ ++L
Sbjct: 71  ADVNAVDHAGMTPLRLAALFG----HLEIVEVL 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 85.9 bits (214), Expect = 1e-20
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL  G D+++ D +G TPLH A   G ++ V++L+K   DVN  D  G T   I+I + 
Sbjct: 98  VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157

Query: 245 NRDIAKVLL 253
           N D+A++L 
Sbjct: 158 NEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 225 DVNVA-DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY 283
             +    ++    L  A ++   D  ++L+ NGAD + +   G T L ++   G      
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG----HL 60

Query: 284 DLAKLL 289
           ++ ++L
Sbjct: 61  EIVEVL 66

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN 223
           LL  G D+++ DK G T    ++  G     ++L K N
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  111 bits (281), Expect = 6e-31
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +L+  G D+++ D+ G TPL+ A   G ++ V++L+K   DVN  D  G+TPLH+A    
Sbjct: 32  ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + +IA+VLL +GAD + + K GKTA D+S+  G    + DLA++L
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG----NEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 95.5 bits (239), Expect = 1e-24
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           D    L  A + G    V++L+    DVN  D  G TPL++A    + +I +VLL NGAD
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +     G T L ++   G      ++A++L
Sbjct: 73  VNAVDAIGFTPLHLAAFIG----HLEIAEVL 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.1 bits (212), Expect = 7e-21
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G D+++VD  G TPLH A  +G ++  ++L+K+  DVN  D  G T   I+I + N
Sbjct: 66  LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125

Query: 246 RDIAKVLL 253
            D+A++L 
Sbjct: 126 EDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.4 bits (140), Expect = 1e-10
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 225 DVNVAD-NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY 283
             +    ++    L  A ++   D  ++L+ NGAD + K + G T L ++  +G      
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG----HL 60

Query: 284 DLAKLL 289
           ++ ++L
Sbjct: 61  EIVEVL 66

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 47.4 bits (114), Expect = 5e-07
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN 223
           LL  G D+++ DK G T    ++  G     ++L K N
Sbjct: 99  LLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (283), Expect = 8e-31
 Identities = 38/86 (44%), Positives = 51/86 (59%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G D+ + DK G  PLH A   G  +  +LL+K+   VNVAD   +TPLH A     
Sbjct: 61  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120

Query: 246 RDIAKVLLINGADKSRKTKDGKTALD 271
            +I K+LL +GAD ++K +DG T LD
Sbjct: 121 YEICKLLLQHGADPTKKNRDGNTPLD 146

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  105 bits (264), Expect = 5e-28
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 4/101 (3%)

Query: 189 GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 248
             ++   ++   +TPLH+A     +  V+ L+++  DV+  D  G  PLH A    + ++
Sbjct: 31  QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV 90

Query: 249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           A++L+ +GA  +       T L  +   G     Y++ KLL
Sbjct: 91  AELLVKHGAVVNVADLWKFTPLHEAAAKG----KYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 96.7 bits (242), Expect = 7e-25
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 254
            + +    L  A + G +++VK L     V+    +    TPLH A       + + LL 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 255 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +GAD   K K G   L  +  YG     Y++A+LL
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYG----HYEVAELL 94

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.8 bits (219), Expect = 2e-21
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +L+  G  ++  D    TPLH A   G  +  KLL+++  D    + +G TPL +  +  
Sbjct: 93  LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDG 151

Query: 245 NRDIAKVLLINGA 257
           + DI  +L  + A
Sbjct: 152 DTDIQDLLRGDAA 164

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  110 bits (277), Expect = 2e-30
 Identities = 42/105 (40%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL+ G D+++ DK+G TPLH A + G ++ VKLL++   DVN  D  G TPLH+A ++ 
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + ++ K+LL  GAD + K K+G+T L ++   G      ++ KLL
Sbjct: 80  HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG----HLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 96.6 bits (242), Expect = 2e-25
 Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           +G TPLH A + G ++ VKLL++   DVN  D  G TPLH+A ++ + ++ K+LL  GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            + K K+G+T L ++   G      ++ KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNG----HLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 90.5 bits (226), Expect = 7e-23
 Identities = 32/73 (43%), Positives = 50/73 (68%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL+ G D+++ DK+G TPLH A + G ++ VKLL++   DVN  D  G TPLH+A ++ 
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112

Query: 245 NRDIAKVLLINGA 257
           + ++ K+LL  GA
Sbjct: 113 HLEVVKLLLEAGA 125

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  113 bits (286), Expect = 2e-30
 Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 189 GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 248
              D+D+   DG TPL  A ++     ++ LI  + DVN  D+ G + LH A    N D 
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 172

Query: 249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           A VLL NGA+K  +    +T L ++   G    SY+ AK+L
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREG----SYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  112 bits (284), Expect = 5e-30
 Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            L++   D+++VD  G + LH+A  V  + +  +L+K   + ++ +N   TPL +A +  
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 201

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + + AKVLL + A++       +   D++         +D+ +LL
Sbjct: 202 SYETAKVLLDHFANRDITDHMDRLPRDIAQERM----HHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  102 bits (257), Expect = 4e-26
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 186 LLDGGLDI-DSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            +  G  + +  D+ G T LH A +     + K L++ + D N+ DN G TPLH A+ + 
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101

Query: 245 NRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            + + ++L+ N A D   +  DG T L ++           + + L
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLA----VEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 94.8 bits (237), Expect = 3e-23
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 18/113 (15%)

Query: 191 LDIDSVDKDGATPLHYAVQVGAMQS-------------VKLLIKYNVDV-NVADNEGWTP 236
           +D++    DG TPL  A   G                 +   I     + N  D  G T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 237 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           LH+A +    D AK LL   AD + +   G+T L  ++       +  + ++L
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD----AQGVFQIL 109

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 94.5 bits (236), Expect = 4e-23
 Identities = 18/73 (24%), Positives = 36/73 (49%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G + D  +    TPL  A + G+ ++ K+L+ +  + ++ D+    P  IA +  +
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235

Query: 246 RDIAKVLLINGAD 258
            DI ++L +    
Sbjct: 236 HDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           +LLD   + D  D     P   A +      V+LL   +   +
Sbjct: 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (275), Expect = 3e-30
 Identities = 29/86 (33%), Positives = 44/86 (51%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
            +  G D++   + G  PLHYA   G ++ ++ L+    D+N  D    TPL  A+   +
Sbjct: 26  YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85

Query: 246 RDIAKVLLINGADKSRKTKDGKTALD 271
               K+LL  GADK+ K  DG TA +
Sbjct: 86  VSCVKLLLSKGADKTVKGPDGLTAFE 111

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 91.7 bits (229), Expect = 2e-23
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
           +         +A++ G +  VK  +    DVN     G  PLH A      +I + LL+ 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 256 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           GAD +   K   T L  ++  G         KLL
Sbjct: 63  GADINAPDKHHITPLLSAVYEGH----VSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 76.3 bits (189), Expect = 1e-17
 Identities = 21/65 (32%), Positives = 29/65 (44%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G DI++ DK   TPL  AV  G +  VKLL+    D  V   +G T          
Sbjct: 59  LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118

Query: 246 RDIAK 250
           + + +
Sbjct: 119 KALLQ 123

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  114 bits (288), Expect = 3e-30
 Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL+ G DI+  + DG T LH A     +  VK L++   ++N  DNEGW PLH A     
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            DIA+ L+  GA       +G T LD++          +L +  
Sbjct: 119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA----MEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (283), Expect = 2e-29
 Identities = 32/87 (36%), Positives = 44/87 (50%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            L  G ++     K G T LH A   G  + +KLLI+   DVN+ D +GWTPLH A    
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALD 271
             +  ++L+ N  D     K G+TA D
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQTAFD 270

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 96.8 bits (242), Expect = 1e-23
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDV 226
           + R  Q          ++  +           DG      A   G  + V  L++   D+
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADI 66

Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA 286
           N A+ +G T LH A    N D+ K L+ NGA+ ++   +G   L  +   G      D+A
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG----YLDIA 122

Query: 287 KLL 289
           + L
Sbjct: 123 EYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 92.2 bits (230), Expect = 7e-22
 Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 31/131 (23%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L++ G +I+  D +G  PLH A   G +   + LI     V   ++EG TPL IA +   
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151

Query: 246 RDIAKVL--------------------------LI-NGADKSRKTKDGKTALDMSLCYGR 278
            ++ +                            L     +  R  K G TAL ++   G 
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG- 210

Query: 279 DFKSYDLAKLL 289
                ++ KLL
Sbjct: 211 ---YTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 90.3 bits (225), Expect = 3e-21
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++    D         ++    + + L   +++       G T LH+A      ++ K+L
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +    D + K  DG T L  +  +G      +  ++L
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWG----KEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 18/83 (21%), Positives = 37/83 (44%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           + +L+    D++  D DG TPLH A   G  ++ ++L++   D+   +  G T   +A +
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

Query: 243 SRNRDIAKVLLINGADKSRKTKD 265
                + ++        S K + 
Sbjct: 275 DILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 84.9 bits (211), Expect = 2e-19
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +   D            +G+   ++  +       V  ++G   L  A  S + +    L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRL 59

Query: 253 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           L  GAD +    DG TAL  +        + D+ K L
Sbjct: 60  LERGADINYANVDGLTALHQACIDD----NVDMVKFL 92

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (289), Expect = 5e-30
 Identities = 28/90 (31%), Positives = 47/90 (52%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
            ++LL  G +++  +KD  TPLH A +      +++L K+   +N  D+ G T LH A  
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDM 272
           + +    ++LL  G+D S  +  G TA  M
Sbjct: 290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (287), Expect = 1e-29
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G D+ + DK G  PLH A   G  +  +LL+K+   VN  D   +TPLH A     
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            ++  +LL +GAD +     GK+A+DM+          +     
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE----LRERLTYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  112 bits (283), Expect = 4e-29
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L    ++  + D   +TPLH A     ++ V+LL+++  DV+  D  G  PLH A    +
Sbjct: 44  LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            ++ ++LL +GA  +       T L  +    R     ++  LL
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV----EVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  104 bits (262), Expect = 4e-26
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQS-VKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           L D         +     L  A + G  +  + LL   NV+ + +D    TPLH+A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              I ++LL +GAD   K K G   L  +  YG     Y++ +LL
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG----HYEVTELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 98.7 bits (247), Expect = 5e-24
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           M++L   G  ++++D  G T LH A   G +Q+ +LL+ Y  D ++   +G+T   +   
Sbjct: 263 MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN- 321

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKT 268
               +  + +L           D + 
Sbjct: 322 ----EAVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 98.3 bits (246), Expect = 7e-24
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 22/126 (17%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL  G  ++++D    TPLH A     ++   LL+ +  D  + +  G + + +A    
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168

Query: 245 NRDIAKV---------------------LLINGADKSRKTKDGKTALDMSLCYGRDFKSY 283
            R+                          L       ++ +  +TAL          K  
Sbjct: 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETAL-HCAVASLHPKRK 227

Query: 284 DLAKLL 289
            +A+LL
Sbjct: 228 QVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 89.9 bits (224), Expect = 8e-21
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 28/128 (21%)

Query: 186 LLDGGLDIDSVDKDGATPLHY---------------------AVQVGAMQSVKLLIKYNV 224
           LL  G D   V+  G + +                       A +   +  VK  +   +
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202

Query: 225 DVNVADNEGWTPLHIAIQS---RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK 281
                     T LH A+ S   + + +A++LL  GA+ + K KD  T L ++        
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA---- 258

Query: 282 SYDLAKLL 289
             D+ ++L
Sbjct: 259 HNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.8 bits (159), Expect = 3e-12
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 18/93 (19%)

Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD-IAKVLLING 256
           + G + L              L   +    +        L  A +S N + +  +L    
Sbjct: 2   EFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +         T L ++  Y R      + +LL
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRV----RIVQLL 77

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  108 bits (273), Expect = 6e-30
 Identities = 31/86 (36%), Positives = 47/86 (54%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL  G D+++  KDG TPLH A + G  + VKLL+    DVN    +G TP H+A ++ 
Sbjct: 27  KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86

Query: 245 NRDIAKVLLINGADKSRKTKDGKTAL 270
           + +I K+L   GAD + ++       
Sbjct: 87  HHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  102 bits (257), Expect = 1e-27
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 4/93 (4%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
            KDG TPLH A + G  + VK L+    DVN    +G TPLH+A ++ + +I K+LL  G
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65

Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           AD + ++KDG T   ++   G     +++ KLL
Sbjct: 66  ADVNARSKDGNTPEHLAKKNG----HHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.0 bits (178), Expect = 3e-16
 Identities = 20/54 (37%), Positives = 26/54 (48%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH 238
           +LL  G D+++  KDG TP H A + G  + VKLL     DVN          H
Sbjct: 60  LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA 286
                +G TPLH A ++ + +  K LL  GAD + ++KDG T L ++   G      ++ 
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG----HAEIV 58

Query: 287 KLL 289
           KLL
Sbjct: 59  KLL 61

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  109 bits (276), Expect = 7e-30
 Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G + D  D+ G   +H A + G + +++ L+++  DVN+ DNEG  PLH+A +  +
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 246 RDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             + + L+ + A +   +   G TA D++  YG      ++  L+
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYG----RNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  103 bits (259), Expect = 3e-27
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL   +++++ +  G T L      G  +  + L+    + ++ D  G+  +H A ++  
Sbjct: 24  LLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            D  + LL   AD + +  +G   L ++   G       + + L
Sbjct: 83  LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG----HLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 94.0 bits (235), Expect = 8e-24
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
           + +     L  A   G ++ +  L++ NV+VN  +  G T L +     N +IA+ LL+ 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLR 59

Query: 256 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           GA+   K + G   +  +   G      D  + L
Sbjct: 60  GANPDLKDRTGFAVIHDAARAG----FLDTLQTL 89

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.1 bits (217), Expect = 3e-21
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQS 243
            LL+   D++  D +G  PLH A + G ++ V+ L+K+   +V   +++G T   +A   
Sbjct: 88  TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147

Query: 244 RNRDIAKVLLINGA 257
              ++  ++  NGA
Sbjct: 148 GRNEVVSLMQANGA 161

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  111 bits (280), Expect = 8e-30
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQS 243
             LD  + ++ +DK G+T L++A   G    V++L  + N+++N  +  G T LH A   
Sbjct: 91  ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              DI ++LL  GA    +  + K A DM+           L K  
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA----CASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  102 bits (257), Expect = 2e-26
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
             L     +    +    PLH A + G +  ++  +   V VN  D  G T L+ A    
Sbjct: 58  TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117

Query: 245 NRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           ++DI ++L      + +++ K G TAL  +   G      D+ +LL
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY----ADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.1 bits (245), Expect = 1e-24
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 185 MLLD-GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           ML     ++++  +K G T LH A   G    V+LL+      ++ + E      +A  +
Sbjct: 124 MLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA 183

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTAL 270
               + K      A ++    +     
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 87.3 bits (217), Expect = 9e-21
 Identities = 25/106 (23%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 184 DMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           D L     DI  +     T        G       LI  N  V         PLH A + 
Sbjct: 29  DELYIEEGDIIYITDMSDTNWWKGTSKG----RTGLIPSN-YVAEQAESIDNPLHEAAKR 83

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            N    +  L N    +   K G TAL  +   G      D+ ++L
Sbjct: 84  GNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG----HKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 7/56 (12%), Positives = 17/56 (30%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 240
           +LL  G   D  + +       A        +K     +    +++ E +     +
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 10/93 (10%), Positives = 22/93 (23%), Gaps = 9/93 (9%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
            K G   +  A+     ++   L     D+    +   T              +  LI  
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-----GRTGLIPS 63

Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              + + +     L  +   G         +  
Sbjct: 64  NYVAEQAESIDNPLHEAAKRGNL----SWLREC 92

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 9/52 (17%), Positives = 12/52 (23%)

Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
                 G   +  A+ +        L I   D    T    T        GR
Sbjct: 6   PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  110 bits (278), Expect = 2e-29
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL  G DI+  D +    LH+A   G +   ++L+    D++  +  G +PLHIA +  
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN 188

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             D   + L   +D + K K+G+T L  +            A  +
Sbjct: 189 RYDCVVLFLSRDSDVTLKNKEGETPLQCASLNS----QVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  107 bits (269), Expect = 5e-28
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 189 GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 248
           G +D++  D  G TP+ +A +   +  VKLL+    D+N+ DNE    LH A  S   DI
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159

Query: 249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           A++LL    D       G + L ++         YD   L 
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAAREN----RYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  104 bits (262), Expect = 5e-27
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 192 DIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV 251
           +     ++  +PLH A + G +    +L++   +++    +  TPL  A ++ + +  K 
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 252 LLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           L+  GA    K  +G T L ++   G     Y++ + L
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAKKG----HYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  104 bits (261), Expect = 8e-27
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           ML+  G +ID+  +D  TPL  A +   +++VK LIK    V+  D EG T LH+A +  
Sbjct: 29  MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88

Query: 245 NRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + ++ + LL NG  D + +   G T +  +  Y       DL KLL
Sbjct: 89  HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK----HVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 89.0 bits (222), Expect = 3e-21
 Identities = 21/73 (28%), Positives = 32/73 (43%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL    D+ +V+  G +PLH A +      V L +  + DV + + EG TPL  A  +  
Sbjct: 163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222

Query: 246 RDIAKVLLINGAD 258
              A  +     D
Sbjct: 223 VWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.0 bits (183), Expect = 8e-16
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 223 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 282
           +++  +      +PLH A ++ + DI  +L+  GA+    ++D +T L  +         
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN----H 56

Query: 283 YDLAKLL 289
            +  K L
Sbjct: 57  LEAVKYL 63

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (280), Expect = 3e-29
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 185 MLLDGGLDIDSVDKD-GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           +L D G D++  +   G TPLH AV+  A   ++LL+K   D       G TPL  A+  
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 277
            N  +A++L  +GA +     D  +    S    
Sbjct: 236 PNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (274), Expect = 2e-28
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQS 243
              D  L +++ + DG TPLH AV     + V+LL     D+N  +   G TPLH+A+++
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +   + ++LL  GAD + +   G+T L  +L       +  LA+LL
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRP----NPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  102 bits (256), Expect = 9e-26
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 7/100 (7%)

Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD---VNVADNEGWTPLHIAIQSRNRDIA 249
              V +DG T LH AV       +  L+ ++     +++ ++ G T LH+A         
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 250 KVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + L   GA      + G TAL ++        ++  A +L
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVR----AHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 97.6 bits (244), Expect = 4e-24
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 186 LLDGGLDIDSV---DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           LL      + +   +  G T LH A  +G   +V+ L      V VA+  G T LH+A +
Sbjct: 28  LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR 87

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTAL 270
            R    A VLL       R   D     
Sbjct: 88  VRAHTCACVLLQPRPSHPRDASDTYLTQ 115

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 85.7 bits (213), Expect = 1e-19
 Identities = 13/68 (19%), Positives = 21/68 (30%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G D  +    G TPL  A+        +LL  +         +  +P   +    +
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270

Query: 246 RDIAKVLL 253
            D      
Sbjct: 271 SDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 85.7 bits (213), Expect = 1e-19
 Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 18/119 (15%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW---------- 234
            L   G  +   ++ G T LH A +V A     +L++         ++ +          
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 235 ---TPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
               P  +  Q    +  +            +  DG T L +++ +       ++ +LL
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK----DAEMVRLL 177

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.7 bits (200), Expect = 6e-18
 Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 194 DSVDKDGATPLHYAVQVGAMQSV-KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           D        P     Q             + + +   + +G TPLH+A+  ++ ++ ++L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 253 LINGADKSRKTKD-GKTALDMSLCYGRDFKSYDLAKLL 289
              GAD ++     G+T L +++       +  + +LL
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQ----AASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 5/37 (13%), Positives = 9/37 (24%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY 222
           L   G        D  +P   +       +     +Y
Sbjct: 244 LRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEY 280

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (271), Expect = 8e-29
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL  G ++++ D  G TPL +++  G  +    L+++  +VN  + EG TPL +A +  
Sbjct: 86  KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             +I K LL  GAD S +   G TA   +  +G      ++ K+ 
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFG----RQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (270), Expect = 1e-28
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L++    ++  D +G+T L +AV+   +   + L+    +VN  D  G TPL  +I    
Sbjct: 54  LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +++  LL +GA+ + +  +G+T L ++  YG      ++ K L
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYG----RSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 98.6 bits (247), Expect = 3e-25
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 191 LDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK 250
              +  D    TPL  A  +G   ++  L++    +   D EG T L  A+++    IA+
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85

Query: 251 VLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            LL  G++ + K   GKT L  S+ +G      +++  L
Sbjct: 86  KLLSKGSNVNTKDFSGKTPLMWSIIFG----YSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 18/68 (26%), Positives = 34/68 (50%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL+ G +++  + +G TPL  A + G  + VK L++   D++  D  G T    A     
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179

Query: 246 RDIAKVLL 253
           +++ K+  
Sbjct: 180 QEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 80.9 bits (201), Expect = 1e-18
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 195 SVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 254
            +DK+G        +    Q++  L       N  D+   TPL +A      +    L+ 
Sbjct: 3   HMDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 255 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           N      K  +G TAL  ++          +A+ L
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNN----RLGIAEKL 87

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN 223
           LL+ G DI + D  G T    A   G  + +K+  +  
Sbjct: 153 LLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.9 bits (92), Expect = 6e-04
 Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 10/63 (15%)

Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA 286
           +  D  G     I  +          L N      +    +T L ++   G      +  
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDF-LRNY-----RDSYNRTPLMVACMLG----MENAI 51

Query: 287 KLL 289
             L
Sbjct: 52  DKL 54

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  109 bits (274), Expect = 1e-28
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 185 MLLDGGLDIDSVD-KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           +LL+ G DID+VD K G +PL +AV+  ++  V+LL+++  +VN     G + LH A   
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 193

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
               + + L+ +GAD S K     T L ++          D+ +  
Sbjct: 194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR----VIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  105 bits (264), Expect = 3e-27
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 184 DMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           ++   GG ++D  +    TPLH AV       V+LL+         D  G T  H+A + 
Sbjct: 30  NLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH 89

Query: 244 RNRDIAKVLLINGA----DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           R+    + LL + A    D   +  DG TAL +++         +  +LL
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE----CQETVQLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  103 bits (259), Expect = 1e-26
 Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY----NVDVNVADNEGWTPLHIA 240
           +L+  G    ++D+ G T  H A +  +   ++ L+       +D+   + +G T LH+A
Sbjct: 64  LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

Query: 241 IQSRNRDIAKVLLINGADKSRK-TKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + +  ++  ++LL  GAD      K G++ L  ++       S  + +LL
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN----SLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  100 bits (252), Expect = 2e-25
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV----DVNVADNEGWTPLHIAIQSRNRDI 248
               D+DG TPLH AV  G + +V  L+        ++++ +N   TPLH+A+ +    +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            ++L+  GA      + G+TA  ++  +     S    + L
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHR----SPTCLRAL 98

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 92.9 bits (232), Expect = 1e-22
 Identities = 19/73 (26%), Positives = 35/73 (47%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL  G ++++    G++ LH A   G +  V+ L++   D ++ +    TPL +A   R
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227

Query: 245 NRDIAKVLLINGA 257
             DI +      A
Sbjct: 228 VIDILRGKATRPA 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  107 bits (271), Expect = 3e-28
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVG-AMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQS 243
           L+  G D+D +D++G TPL +A     ++   +LL+ +NV VN+ D     T LH A+ +
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            N  +  +LL  GA+   +   G++ALD++        +  +   L
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRK----NVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  104 bits (263), Expect = 5e-27
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 186 LLDGGLDIDSVDKD-GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            +  G  +D +  D  +TPLH+A + G +  V  L+KY  D ++ D EG + +H+A Q  
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120

Query: 245 NRDIAKVLLINGADKSRKTKDGKTAL 270
           +  I   L+  G D     ++G T L
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  103 bits (259), Expect = 2e-26
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 6/106 (5%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L+  G D   +D +G + +H A Q G    V  LI    DV++ D  G TPL  A    +
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154

Query: 246 R-DIAKVLLINGADKSRKTK-DGKTALDMSLCYGRDFKSYDLAKLL 289
             D  ++LL      +   K    TAL  ++  G    +  +  LL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG----NTTVISLL 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  102 bits (258), Expect = 2e-26
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSR 244
           L++ G D+   DK+  T LH+A     +  VK  I     V+    +   TPLH A +  
Sbjct: 28  LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +  +   L+  GAD S    +G + + ++  +G       +   L
Sbjct: 88  HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG----HTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 98.3 bits (246), Expect = 1e-24
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           +  +D      +  A Q G  +  + L++   DV   D E  T LH A  +   D+ K  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 253 LINGADKSRKTKD-GKTAL 270
           +  GA   +   D   T L
Sbjct: 62  ISKGAIVDQLGGDLNSTPL 80

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.4 bits (223), Expect = 2e-21
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 186 LLDGGLDIDSVDK-DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           LL   + ++  DK    T LH+AV  G    + LL++   +V+  + +G + L +A Q +
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK 221

Query: 245 NRDIAKVLLINGADKSRK 262
           N  +   L      K   
Sbjct: 222 NVWMINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 231
           +LL+ G ++D+ +  G + L  A Q   +  +  L +        DN
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG-YDN 240

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  106 bits (267), Expect = 9e-28
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 183 MDMLLDGGLDI---DSVDKDGATPLHYAVQVGAMQSVKLLI--KYNVDVNVADNEGWTPL 237
              LL    ++   D  D  G TP H A  VG ++ VK L       D+N   N+G T L
Sbjct: 52  TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111

Query: 238 HIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           H+A+  +  ++++ L+ NGA    K K  +  L  +   G    S  L +LL
Sbjct: 112 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG----SLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  105 bits (266), Expect = 1e-27
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQSR 244
           L++ G  +   DK    PLH A  VG+++ ++LL       VN  D +GWTPL  A+   
Sbjct: 126 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185

Query: 245 NRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + D A +L+   GA+       G  A D++        +  + K  
Sbjct: 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVA-------LNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  104 bits (263), Expect = 3e-27
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV---ADNEGWTPLHIAIQ 242
           L      +   D+DG  PLH++V   A +    L+    +VN+    D+ GWTP HIA  
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81

Query: 243 SRNRDIAKVLL--INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             N ++ K L       D ++ T  G T L +++        +++++ L
Sbjct: 82  VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK----WFEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  104 bits (261), Expect = 5e-27
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 249
             D++ +   G T LH AV     +  + LI+    V + D     PLH A    +  + 
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 250 KVLLING-ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           ++L   G +  + + K G T L  +L  G      D A LL
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEG----HGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 200 GATPLHYAVQVGAMQSV-KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
              PLH A        V +LL      +   D +G  PLH ++  +  +I   LL    +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 259 ---KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
                     G T   ++   G    + ++ K L
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVG----NLEVVKSL 91

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  105 bits (265), Expect = 1e-27
 Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
            +    D    +++G T LH A+       V  LI    +VN  D+ GWTPLH A    +
Sbjct: 40  AVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND 99

Query: 246 RDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKSYDLAKLL 289
             I   L+ +GA     T  DG TA +    Y   +   D A  L
Sbjct: 100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA--DCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 99.6 bits (249), Expect = 3e-25
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 186 LLDGGLDIDSVDK---DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           +L          +   +    L  A   G ++ V+  +K   D +  + EG T LH AI 
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             N  I   L+  GA+ +     G T L  +           +   L
Sbjct: 64  GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN----DTVICMAL 106

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 92.7 bits (231), Expect = 1e-22
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAI 241
           +D L+  G +++S D  G TPLH A           L+++   +     ++G T      
Sbjct: 70  VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129

Query: 242 QSRN--RDIAKVLLINGADKSRKTKDGKTAL 270
             R    D A  L                AL
Sbjct: 130 PYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 77.3 bits (191), Expect = 4e-17
 Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 10/99 (10%)

Query: 186 LLDGGLDIDSVD-KDGATPLHYAVQV--GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           L+  G  I +    DGAT          G       L      + + ++     L     
Sbjct: 106 LVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-- 163

Query: 243 SRNRDIAKVLLI---NGADKSRKTKDGKTALDMSLCYGR 278
             + +    L           R+    +T    +  +G+
Sbjct: 164 --SAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 216 VKLLIKYNVDVNVADNE---GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 272
           ++ +++       A          L  A  +   ++ +  +    D S+  ++G TAL  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 273 SLCYGRDFKSYDLAKLL 289
           ++C      +Y +   L
Sbjct: 61  AICGA----NYSIVDFL 73

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  108 bits (271), Expect = 2e-27
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           M     L+    D +    +H A + G    V+ LI+  V   + +  G T LH+A +  
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             D AK L   G         G+  + +++         DL   L
Sbjct: 65  CVDTAKYLASVGEVH--SLWHGQKPIHLAVMAN----KTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  106 bits (268), Expect = 6e-27
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 9/109 (8%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN-----VDVNVADNEGWTPLHIA 240
           L+  G    + DK   TPL  A++    +++ L++        + ++ A+ +G + LH A
Sbjct: 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA 218

Query: 241 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           I     D+A   +  G D + +  +    L +S+          L K L
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA----MVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  102 bits (256), Expect = 3e-25
 Identities = 10/84 (11%), Positives = 27/84 (32%)

Query: 190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 249
           G  +          +  A      + ++LL +   +V  + N G        +     + 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 250 KVLLINGADKSRKTKDGKTALDMS 273
           ++ L   A    +++    +  +S
Sbjct: 340 RMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =   99 bits (250), Expect = 2e-24
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 190 GLDIDSVDKDGATPLHYAVQVGA--MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD 247
            +        G T LH+ V +G   ++ +K+L++        D    TPL  A++ RNR+
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187

Query: 248 IAKVLL-----INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              +++      +        K G + L  ++         D+A   
Sbjct: 188 ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN----WEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.8 bits (247), Expect = 6e-24
 Identities = 13/117 (11%), Positives = 34/117 (29%), Gaps = 17/117 (14%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLI-------------KYNVDVNVADNE 232
            ++ G+D++  D +   PL+ +V+   +   K L+                  V      
Sbjct: 230 FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289

Query: 233 GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
               +  A     +++ ++L     +  R    G                  + ++ 
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAA----PAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.0 bits (245), Expect = 1e-23
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)

Query: 190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 249
            L +D  +K G + LH+A+ +         ++  +DVN+ DNE   PL++++++    + 
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260

Query: 250 KVLLINGAD---KSRKTKDGKTAL 270
           K LL        ++    +G T L
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVL 284

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.8 bits (234), Expect = 3e-22
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 25/128 (19%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           +  L++ G+     ++ G T LH A + G + + K L       +     G  P+H+A+ 
Sbjct: 36  VRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVM 93

Query: 243 SRNRDIAKVLLINGADKSR---------------------KTKDGKTALDMSLCYGRDFK 281
           +   D+   L+    ++ +                     K   G+TAL   +  G ++ 
Sbjct: 94  ANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL 153

Query: 282 SYDLAKLL 289
             ++ K+L
Sbjct: 154 --EMIKIL 159

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.5 bits (184), Expect = 2e-15
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 217 KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 276
            +     ++   +D+E    +H+A +    D  + L+  G   + + + G TAL ++  +
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 277 GRDFKSYDLAKLL 289
           G      D AK L
Sbjct: 64  G----CVDTAKYL 72

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 5/55 (9%), Positives = 15/55 (27%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 240
           L +   ++      GA       +  A    ++ +  +  V            ++
Sbjct: 309 LQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  104 bits (262), Expect = 4e-27
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            +      ++  +    TPLH AV     +  + L+    D  + D  G TPLH+A +  
Sbjct: 30  QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89

Query: 245 NRDIAKVLLINGADKSR------KTKDGKTALDMSLCYGRDFKSYDLAKLL 289
                 VL  +               +G T L ++  +G       + +LL
Sbjct: 90  CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG----YLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  102 bits (256), Expect = 3e-26
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 5/101 (4%)

Query: 190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDI 248
              + + + +G T LH A   G +  V+LL+    DVN  +   G T LH+A+  +N D+
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166

Query: 249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             +LL  GAD +R T  G +   ++        S  + + L
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRP----STRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  101 bits (253), Expect = 1e-25
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD------VNVADNEGWTPLHI 239
           LL  G D +  D  G TPLH A + G + SV +L +          +   +  G T LH+
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 240 AIQSRNRDIAKVLLINGADKSRKTK-DGKTALDMSLCYGRDFKSYDLAKLL 289
           A       I ++L+  GAD + +   +G+TAL +++       + DL  LL
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ----NPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  100 bits (251), Expect = 2e-25
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 183 MDMLLDGGLDIDSVDK-DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 241
           +++L+  G D+++ +  +G T LH AV +     V LL+K   DVN    +G++P  +  
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192

Query: 242 QSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
              +  I + L     +  +   + +       
Sbjct: 193 GRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 96.5 bits (241), Expect = 5e-24
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 196 VDKDGATPLHYAVQVG----AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV 251
           + +DG + LH A+        M+ ++ +      +N  +N   TPLH+A+ +   +IA+ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 252 LLINGADKSRKTKDGKTAL 270
           LL  G D   +   G T L
Sbjct: 64  LLGAGCDPELRDFRGNTPL 82

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 65.6 bits (161), Expect = 7e-13
 Identities = 10/64 (15%), Positives = 21/64 (32%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G D++ V   G +P        + +  + L +  ++      E         +S  
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229

Query: 246 RDIA 249
            +  
Sbjct: 230 TEFT 233

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  101 bits (255), Expect = 4e-27
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWT-PLHIAIQS 243
            LL+ G D +++++ G  P+   +  G+ Q  +LL+ +  + N AD    T P+H A + 
Sbjct: 30  QLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAARE 88

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              D   VL   GA        G+  +D++   G      D+A+ L
Sbjct: 89  GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG----HRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 97.9 bits (245), Expect = 1e-25
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 189 GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 248
           G   I  +       L  A   G +++V+ L++   D N  +  G  P+ + +   +  +
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQV 59

Query: 249 AKVLLINGADKSRKTKDGKTA 269
           A++LL++GA+ +       T 
Sbjct: 60  AELLLLHGAEPNCADPATLTR 80

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 89.4 bits (223), Expect = 2e-22
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 185 MLLDGGLDIDSVDKDGAT-PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           +LL  G + +  D    T P+H A + G + ++ +L +    ++V D  G  P+ +A + 
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

Query: 244 RNRDIAKVLLINGAD 258
            +RDIA+ L     D
Sbjct: 122 GHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 65.5 bits (161), Expect = 1e-13
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD 284
            +++        L  A      +  + LL  GAD +   + G+  +   +  G    S  
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMG----SAQ 58

Query: 285 LAKLL 289
           +A+LL
Sbjct: 59  VAELL 63

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  103 bits (259), Expect = 4e-27
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQS 243
            LL+   D+D+VD++G T L +   +G+ + V+LL +   D++  D   G T LH+A   
Sbjct: 62  QLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              ++ + L+  GAD   + + G TAL+++    +           
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT----TPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 88.3 bits (220), Expect = 1e-21
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 185 MLLDGGLDIDSVD-KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           +L + G D+D  D + G T LH A      + V+ L++   D+ V D  G T L +A + 
Sbjct: 94  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153

Query: 244 RNRDIAKVLLINGADKSRK 262
                    +  G     +
Sbjct: 154 LKTTPKGNPMQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.0 bits (201), Expect = 8e-19
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
              +GA       + G   S         DV    +E  TP   A +  +       L+ 
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALS-QLLE 65

Query: 256 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             D     ++G+TAL      G D       +LL
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSD----KCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD 230
           L++ G DI+  D+ G T L  A ++         +++   + +  
Sbjct: 129 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 3/45 (6%)

Query: 226 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
            +    EG     I  +  +           AD      + +T  
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPW 48

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  104 bits (262), Expect = 4e-27
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           ++    D    + +G T LH AV  G  + VK L+++ V+VN AD++GWTPLH A    N
Sbjct: 56  IIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115

Query: 246 RDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKSYDLAKLL 289
             + K L+ +GA     T  D +TA D   C   +      ++ L
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAAD--KCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  101 bits (255), Expect = 4e-26
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
            +  G+ +   +      L  +   G    V+ +I    D ++ ++EG T LH A+ + +
Sbjct: 24  RIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH 82

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +I K L+  G + +    DG T L  +        +  + K L
Sbjct: 83  TEIVKFLVQFGVNVNAADSDGWTPLHCAASCN----NVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 94.6 bits (236), Expect = 3e-23
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN---EGWTPLHI 239
           +  L+  G+++++ D DG TPLH A     +Q  K L++    V        +       
Sbjct: 86  VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145

Query: 240 AIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
            ++      ++ L           K    AL
Sbjct: 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 94.2 bits (235), Expect = 3e-23
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
           +  G   L    +    ++    I + + V   +      L  +      D+ + ++   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            D S    +G TAL  ++C G      ++ K L
Sbjct: 61  DDPSLPNDEGITALHNAVCAG----HTEIVKFL 89

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 8/99 (8%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 186 LLDGGLDIDSVDKDG---ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           L++ G  + ++       A      ++ G  Q  + L      + + +      L     
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP 181

Query: 243 SRNRDIAKVLLINGADKS--RKTKDGKTALDMSLCYGRD 279
             +    ++ +  G   +   +  + +     +    ++
Sbjct: 182 QND---DELPMKEGDCMTIIHREDEDEIEWWWARLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 24/85 (28%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV----------------A 229
           L      +  ++K     L            +L +K    + +                 
Sbjct: 158 LYGVQEKMGIMNKGVIYALWDY---EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLN 214

Query: 230 DNEGWTPLHIA-----IQSRNRDIA 249
           D EG+ P ++      I+ R R +A
Sbjct: 215 DKEGYVPRNLLGLYPRIKPRQRSLA 239

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  102 bits (257), Expect = 6e-27
 Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 24/166 (14%)

Query: 137 LKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV 196
            ++  +L E    +  +   +  L       +  L+      + +    L++ G DI S 
Sbjct: 19  YEDFLELFEKGYEDKESVLKSNIL-------YDVLRNNNDEARYKISMFLINKGADIKSR 71

Query: 197 DKDGATPLHYAVQ------VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK 250
            K+G T      Q       G  +  K+ ++   D+          +   I +   D  +
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 251 VLLI-------NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           ++ +       +G     K K G TAL+      +        K++
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK----PIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.0 bits (229), Expect = 8e-23
 Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVK-------LLIKYNVDVNVADNEGWTPL 237
           + L+ G DI ++ K     +   +    +   +       +  +  + + + D  G T L
Sbjct: 99  IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158

Query: 238 HIAIQSRNRDIAKVLLINGADKSRKTKD 265
               + +     K++       + K   
Sbjct: 159 EFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 84.7 bits (210), Expect = 4e-20
 Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 12/136 (8%)

Query: 167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQS----VKLLIKY 222
           ++R +    +         L + G   D      +  L+  ++    ++       LI  
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKG-YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 223 NVDVNVADNEGWTPLHIAIQSRNRDI------AKVLLINGADKSRKTKDGKTALDMSLCY 276
             D+     EG T      Q    DI       K+ L  GAD +   K  K  +     +
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV-FKNIF 123

Query: 277 GRDFKSYDLAKLLKIL 292
                  ++  L K++
Sbjct: 124 NYFVDENEMIPLYKLI 139

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 198 KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR----DIAKVLL 253
                 +  A  +G  +    L +   +           L+  +++ N      I+  L+
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 254 INGADKSRKTKDGKTALDMSLCYGRD--FKSYDLAKLL 289
             GAD   +TK+G T        G +    + +L K+ 
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  105 bits (264), Expect = 8e-27
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW-TPLHIAIQS 243
           +LL  GLD    D  G T L+YAV  G MQ+VKL +K N  +      GW T  + A+  
Sbjct: 80  ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML 139

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +  I    L              + + +++  G      D+  LL
Sbjct: 140 NDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNG----HVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  103 bits (259), Expect = 3e-26
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL+ G   +    +   PLH A  +   + VK+L+   +D +  D++G T L+ A+ S N
Sbjct: 50  LLNAGALKN--LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN 107

Query: 246 RDIAKVLLINGADKSRKTKDG-KTALDMSLCYGRDFKSYDLAKLL 289
               K+ +          K G KT+   ++          +    
Sbjct: 108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN----DVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  101 bits (253), Expect = 3e-25
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
                 D    D  G +  +YA+    ++ V  L+      N+ +NE   PLH A    +
Sbjct: 17  SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLED 74

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             I K+LL +G D S+    G TAL  ++  G    +    KL 
Sbjct: 75  TKIVKILLFSGLDDSQFDDKGNTALYYAVDSG----NMQTVKLF 114

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 96.1 bits (240), Expect = 2e-23
 Identities = 13/107 (12%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 185 MLLDGGLDIDSVDKDG-ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           + +     +    K G  T  ++AV +  +  V   +   +          + +HI I++
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS-EIPSTFDLAILLSCIHITIKN 171

Query: 244 RNRDIAKVLLINGADKSRKTKDGKT-ALDMSLCYGRDFKSYDLAKLL 289
            + D+  +LL      +          + +++         ++ + L
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK----DIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 79.5 bits (197), Expect = 2e-17
 Identities = 11/86 (12%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 186 LLDGGLDIDSVDKDGATP-LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           LLD     ++ +     P +  A+    ++ ++ L KY++++        +     +   
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLD 232

Query: 245 NRDIAKVLLINGADKSRKTKDGKTAL 270
           + +IAK+++    +    +      +
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.1 bits (183), Expect = 2e-15
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 9/90 (10%)

Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
           G             + +K  +  + D   AD  G +  + AI   N  +   LL  GA K
Sbjct: 1   GMDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 260 SRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
                + +  L  +           + K+L
Sbjct: 58  --NLLENEFPLHQAATLE----DTKIVKIL 81

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  101 bits (254), Expect = 1e-26
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWT-PLHIAIQS 243
            LL+ G + ++ +  G  P+   +  G+ +  +LL+ +  + N AD    T P+H A + 
Sbjct: 30  ALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAARE 88

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              D   VL   GA    +   G+  +D++   G      D+A+ L
Sbjct: 89  GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG----HRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 98.3 bits (246), Expect = 1e-25
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 185 MLLDGGLDIDSVDKDGAT-PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           +LL  G + +  D    T P+H A + G + ++ +L +    ++V D  G  P+ +A + 
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALD 271
            +RD+A+ L                A +
Sbjct: 122 GHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 88.7 bits (221), Expect = 6e-22
 Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 187 LDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR 246
           ++         +  A  L  A   G ++ V+ L++   + N  ++ G  P+ + +   + 
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SA 57

Query: 247 DIAKVLLINGADKSRKTKDGKTA 269
            +A++LL++GA+ +       T 
Sbjct: 58  RVAELLLLHGAEPNCADPATLTR 80

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 62.5 bits (153), Expect = 3e-12
 Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +L   G  +D  D  G  P+  A ++G     + L             G     I     
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEG 150

Query: 245 NRDIA 249
             DI 
Sbjct: 151 PSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD 284
               +       L  A      +  + LL  GA+ +     G+  +   +  G    S  
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMG----SAR 58

Query: 285 LAKLL 289
           +A+LL
Sbjct: 59  VAELL 63

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (263), Expect = 1e-26
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL  G  +   + D A+P+H A + G ++ V  LI Y  +++   +   TPL++A +++
Sbjct: 143 LLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ 201

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            R   K LL +GAD + + K   + L   +       S +LA LL
Sbjct: 202 QRACVKKLLESGADVN-QGKGQDSPLHAVVRTA----SEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (262), Expect = 1e-26
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           ++ L+  G +ID       TPL+ A +      VK L++   DVN       +PLH  ++
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVR 231

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 277
           + + ++A +L+  GAD   K  +GK  +++     
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  103 bits (259), Expect = 4e-26
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L+  G  ++ +  D  +PLH A   G +  VK+L+K+   VN    +  TPL  A  S +
Sbjct: 78  LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137

Query: 246 RDIAKVLLINGADKSRKTKDGKTAL 270
            D   +LL +GA       D  + +
Sbjct: 138 WDCVNLLLQHGASVQ-PESDLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  100 bits (251), Expect = 4e-25
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL   L  D       +P+H A   G   S++ LI     VN+   +  +PLH A    +
Sbjct: 47  LLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH 104

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
               K+LL +GA  +  T D  T L  +   G    S+D   LL
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSG----SWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.8 bits (216), Expect = 5e-20
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL+ G D++   K   +PLH  V+  + +   LL+ +  D    + EG  P+ +     
Sbjct: 208 KLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV--PP 264

Query: 245 NRDIAKVLLI-NGAD 258
              +A++ L   GA 
Sbjct: 265 ESPLAQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.1 bits (209), Expect = 4e-19
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 16/109 (14%)

Query: 186 LLDGGLDIDSVDK-----DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 240
           L+  G  + S+D      DG+ P       G    ++LL              W+P+H A
Sbjct: 14  LVPRGSHMASMDGKQGGMDGSKPAGPRDFPG----IRLLSNPL---MGDAVSDWSPMHEA 66

Query: 241 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
               ++   + L+  G   +  T D  + L  +   G         K+L
Sbjct: 67  AIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG----HLSCVKIL 111

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 8/88 (9%), Positives = 19/88 (21%), Gaps = 16/88 (18%)

Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNE-----GWTPLHIAIQSRNRDIAKVLLINGADKSR 261
                       L+     +   D +     G  P          D   + L++      
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPR------DFPGIRLLSNPLMG- 54

Query: 262 KTKDGKTALDMSLCYGRDFKSYDLAKLL 289
                 + +  +  +G         + L
Sbjct: 55  DAVSDWSPMHEAAIHGHQ----LSLRNL 78

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  104 bits (262), Expect = 1e-26
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 185 MLLD-GGLDIDSVDKDGATPLHYAVQVGAMQS----VKLLIKYNVDVNVADNEGWTPLHI 239
           +LLD  G D+++ D  G   L +A+             LL+ +  DVNV    G TPL +
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 240 AIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           A++ ++  + + LL     + +    DGKTAL +++          +A+LL
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK----LKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  104 bits (261), Expect = 2e-26
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 186 LLDGGLDIDSVDKD-GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           LL+GG +++  +++ G TPLH AVQ+     V+LL+++  D  +    G TP  +A  + 
Sbjct: 24  LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +  + K+ L  GAD +     G TA   +  YG         K L
Sbjct: 84  SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG----KVKALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 99.9 bits (250), Expect = 7e-25
 Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 14/114 (12%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G D     K+GATP   A   G+++ +KL +    DVN  D  G+T    A     
Sbjct: 58  LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117

Query: 246 RDIAKVLLINGAD----------KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
               K L   GA+          + R  K G TAL  +   G      ++ K+L
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG----HVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 99.9 bits (250), Expect = 8e-25
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 11/115 (9%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN----------EGWT 235
            L  G D++  D  G T    A   G ++++K L K   +VN+              G T
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150

Query: 236 PLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            L  A +  + ++ K+LL   GAD +     G+ AL  +L    D     +  LL
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 97.5 bits (244), Expect = 5e-24
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 5/94 (5%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLIN 255
             +    L  AVQ   +  V+ L++   +VN  + E GWTPLH A+Q    DI ++LL +
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 256 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           GAD   + K+G T   ++   G    S  L KL 
Sbjct: 62  GADPVLRKKNGATPFLLAAIAG----SVKLLKLF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 94.1 bits (235), Expect = 9e-23
 Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSR 244
           LLD G D++   + G TPL  AV+   +  V+ L+ + ++++N  D++G T L +A++ +
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 245 NRDIAKVLLINGADKSRK 262
            + IA++L   GA     
Sbjct: 265 LKKIAELLCKRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.8 bits (133), Expect = 7e-09
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 229 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD-GKTALDMSLCYGRDFKSYDLAK 287
           A  E    L  A+Q+ + D+ + LL  GA+ + + ++ G T L  ++         D+ +
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS----REDIVE 56

Query: 288 LL 289
           LL
Sbjct: 57  LL 58

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 185 MLLD-GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 231
            LL+   ++I+  D DG T L  AV++   +  +LL K     +  D 
Sbjct: 237 RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  102 bits (256), Expect = 1e-26
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L D    +D VD +G TPL+ AV    ++  K LI    D+N+ ++   +P   A     
Sbjct: 25  LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR 84

Query: 246 RDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +I   +L +   D ++  + G  AL  +   G      D  KLL
Sbjct: 85  TEILAYMLKHATPDLNKHNRYGGNALIPAAEKG----HIDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  101 bits (255), Expect = 2e-26
 Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 11/112 (9%)

Query: 185 MLLD-GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQ 242
            +L     D++  ++ G   L  A + G + +VKLL++    D++  ++ G+T L  A+ 
Sbjct: 90  YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149

Query: 243 SRNR-----DIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            R       DI K+L+ NGAD+S K   G+TA+D +   G      +++K+L
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG----YTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 96.0 bits (240), Expect = 3e-24
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSR 244
           L+D G DI+  +    +P  YA   G  + +  ++K+   D+N  +  G   L  A +  
Sbjct: 58  LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117

Query: 245 NRDIAKVLLING-ADKSRKTKDGKTALDMSLCYGRDFKSY-DLAKLL 289
           + D  K+LL +G  D   +   G TAL  ++      + Y D+ KLL
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 95.6 bits (239), Expect = 6e-24
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
             +    L  A Q    +  ++L      V+  D EG TPL+IA+ + + +IAK L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           AD + +     +    +   GR     ++   +
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRT----EILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 185 MLLD-GGLDIDSVDKDGATPLHYAVQVGAMQS-----VKLLIKYNVDVNVADNEGWTPLH 238
           +LL+ G  DID  +  G T L  AV +          VKLL++   D ++ DN G T + 
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD 183

Query: 239 IAIQSRNRDIAKVLL 253
            A Q    +I+K+L 
Sbjct: 184 YANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
           +   E    L  A Q   + + ++L            +G T L++++         ++AK
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNN----DIEIAK 56

Query: 288 LL 289
            L
Sbjct: 57  AL 58

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.2 bits (116), Expect = 6e-07
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN 223
           L++ G D    D  G T + YA Q G  +  K+L +YN
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  102 bits (256), Expect = 4e-26
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQS 243
            LL+   D+D+VD++G T L +   +G+ + V+LL +   D++  D   G T LH+A   
Sbjct: 63  QLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121

Query: 244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
              ++ + L+  GAD   + + G TAL+++    +           
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKT----TPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 89.2 bits (222), Expect = 3e-21
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
                  D   V  +  TP   A +    Q++  L++ + DV+  D  G T L       
Sbjct: 33  PSSYIAAD---VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLG 88

Query: 245 NRDIAKVLLINGADKSRK-TKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +    ++L   GAD   +  + G TAL M+  Y       ++ + L
Sbjct: 89  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV----RPEVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 185 MLLDGGLDIDSVD-KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           +L + G D+D  D + G T LH A      + V+ L++   D+ V D  G T L +A + 
Sbjct: 95  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154

Query: 244 RNRDIAKVLLINGADKSRK 262
                    +  G     +
Sbjct: 155 LKTTPKGNPMQFGRRIGLE 173

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 24/108 (22%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY---------------------- 222
            L++ G DI+  D+ G T L  A ++         +++                      
Sbjct: 129 ALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAE 188

Query: 223 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
             ++     +G    ++       D   V  ++ A+     KD +  L
Sbjct: 189 VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAED--VAKDYEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 77.3 bits (191), Expect = 7e-17
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 8/93 (8%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
             +GA       + G   S         DV    +E  TP   A +  +       L+  
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALS-QLLED 67

Query: 257 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            D     ++G+TAL      G    S    +LL
Sbjct: 68  RDVDAVDENGRTALLFVAGLG----SDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 3/44 (6%)

Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 270
           +    EG     I  +  +           AD      + +T  
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPW 49

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 97.3 bits (243), Expect = 1e-25
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 7/106 (6%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            L+  G  +     D    L  A + G    V++L+    DV   D  G TPLH+A ++ 
Sbjct: 12  GLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
           + ++ K+LL  GAD   + K GKTA D+S+  G +    DLA++L+
Sbjct: 69  HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNE----DLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
                       L+     +    ++    L  A ++   D  ++L+ NGAD + K K+G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 267 KTAL 270
            T L
Sbjct: 58  STPL 61

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  102 bits (256), Expect = 3e-25
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 184 DMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQ 242
            +  DG    DS    G T LHYA QV  M  VK L+     + +  D +G TP+ +A Q
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
               ++   L+  GA          TA  ++         +++  + 
Sbjct: 323 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN----HHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  101 bits (254), Expect = 6e-25
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
            +  G D++++D D  TPL  AV     + V  L+K   D  + +    + LH A  +R+
Sbjct: 152 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRD 211

Query: 246 RDIAKVLL---INGADKSRKTKDGKTAL 270
             +   +L       D     ++G TAL
Sbjct: 212 FGMMVYMLNSTKLKGDIEELDRNGMTAL 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 13/115 (11%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--------DVNVADNEGW 234
            + +    ++I    +   T LH+     + +  + LI +          DVN  D +  
Sbjct: 109 TEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 167

Query: 235 TPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           TPL +A+ +R R +   L+  GAD +   K  ++AL  +         + +   +
Sbjct: 168 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR----DFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 95.0 bits (237), Expect = 1e-22
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 18/118 (15%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLI---KYNVDVNVADNEGWTPLHIAIQ 242
           L+  G D    +K   + LH A        +  ++   K   D+   D  G T L I   
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244

Query: 243 SRNRD---IAKVLLINGAD--------KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +  RD    AK+L+  GA         K  +   G+TAL  +        +  + K L
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS----NMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 18/74 (24%), Positives = 33/74 (44%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           + + G + D  D+DG TP+  A Q G ++ V  LI+    V   D    T   +A  + +
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358

Query: 246 RDIAKVLLINGADK 259
            +I  +      ++
Sbjct: 359 HNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 90.4 bits (225), Expect = 7e-21
 Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 184 DMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           D            + +    LH     G+    + + + +V++        T LH    +
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASN 135

Query: 244 RNRDIAKVLLIN--------GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            + + ++ L+++        GAD +    D  T L +++   R      L   L
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR----RRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 11/102 (10%), Positives = 23/102 (22%), Gaps = 14/102 (13%)

Query: 188 DGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD 247
           +               L  A   G ++  +         N   +    P      + N  
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDF 75

Query: 248 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +      N    +    +    L      G    SY + + +
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTE-AAG----SYAITEPI 112

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 98.8 bits (246), Expect = 7e-25
 Identities = 31/94 (32%), Positives = 47/94 (50%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            +L         D+D  T LH+A   G  + V+ L++  V VN  D+ GW+PLHIA  + 
Sbjct: 25  RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
             +I K LL+ GA  +   ++G T L  +    R
Sbjct: 85  XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.2 bits (221), Expect = 2e-21
 Identities = 31/93 (33%), Positives = 43/93 (46%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           LL  G+ ++  D  G +PLH A   G  + VK L+     VN  +  G TPLH A     
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

Query: 246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
            +IA +LL  GA+   K     TA+  +   G 
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 87.6 bits (217), Expect = 1e-20
 Identities = 13/72 (18%), Positives = 25/72 (34%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
                 + A      +  + ++         D +  T LH A  + + +I + LL  G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 259 KSRKTKDGKTAL 270
            + K   G + L
Sbjct: 66  VNDKDDAGWSPL 77

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 2e-20
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 159 NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKL 218
           ++  ++     PL       +     MLL+GG + D+ D   AT +H A   G ++ V +
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 219 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
           L+ Y    N+ D EG TPLH+A      + AK L+  GA    + K+ KT L ++     
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK---- 213

Query: 279 DFKSYDLAKLL 289
                 L    
Sbjct: 214 --GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 82.2 bits (203), Expect = 8e-19
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           +  LL  G  +++V+++G TPLHYA      +   +L++   + +  D+   T +H A  
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
             N  +  +LL   A  + +  +G T L ++    R
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.4 bits (188), Expect = 1e-16
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 159 NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKL 218
           N           +        ++ + +LL      +  D +G TPLH A     ++  K 
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

Query: 219 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           L+     + + + E  TPL +A       +    L  G +
Sbjct: 191 LVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 2/70 (2%)

Query: 159 NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKL 218
           +     T    PL       ++     L+  G  I   +K+  TPL  A   G +  +  
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILK 221

Query: 219 LIKYNVDVNV 228
            +    + ++
Sbjct: 222 RLAEGEEASM 231

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.3 bits (236), Expect = 9e-25
 Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
           +G TPLH A + G ++ VKLL++   DVN  D  G TPLH+A ++ + ++ K+LL  GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            + K K+G+T L ++   G      ++ KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNG----HLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 91.6 bits (229), Expect = 7e-24
 Identities = 32/73 (43%), Positives = 50/73 (68%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
           +LL+ G D+++ DK+G TPLH A + G ++ VKLL++   DVN  D  G TPLH+A ++ 
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79

Query: 245 NRDIAKVLLINGA 257
           + ++ K+LL  GA
Sbjct: 80  HLEVVKLLLEAGA 92

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 22/122 (18%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDV-----NVADNEGWTPLHIA 240
           L   G ++      G T LH A     +++  +L++   ++          EG T LHIA
Sbjct: 23  LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82

Query: 241 IQSRNRDIAKVLLINGADKSRKTKD-------------GKTALDMSLCYGRDFKSYDLAK 287
           + ++N ++ + LL  GA  S +                G+  L  + C G    S ++ +
Sbjct: 83  VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG----SEEIVR 138

Query: 288 LL 289
           LL
Sbjct: 139 LL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 90.4 bits (225), Expect = 7e-22
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 27/127 (21%)

Query: 186 LLDGGLDIDSVDKD-------------GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE 232
           LL  G  + +                 G  PL +A  VG+ + V+LLI++  D+   D+ 
Sbjct: 94  LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL 153

Query: 233 GWTPLHIAIQSRNRDIA----KVLLINGADKSRKT------KDGKTALDMSLCYGRDFKS 282
           G T LHI I   N+  A     +LL        K+        G T   ++   G    +
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG----N 209

Query: 283 YDLAKLL 289
             + + L
Sbjct: 210 IVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 10/96 (10%)

Query: 200 GATPLHYAVQVGAMQSV-KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
             +PL  A +   +Q++ KLL     +V+     G T LHIA    N + A VL+    +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 259 KSR-----KTKDGKTALDMSLCYGRDFKSYDLAKLL 289
                   +  +G+TAL +++       + +L + L
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQ----NVNLVRAL 94

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 99.7 bits (248), Expect = 2e-24
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 5/196 (2%)

Query: 80  DDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKE 139
            D   +  DD+D          +DL  +      +      +            E  L+ 
Sbjct: 10  GDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQR 69

Query: 140 VEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDS-VDK 198
           +      E    LN +++    +  ++  +       S+     D   +  L+++  VD+
Sbjct: 70  LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE 129

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN----RDIAKVLLI 254
            G TPLH+   +  ++ VK L+K+  +    DN G + L  A++S N         +L  
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189

Query: 255 NGADKSRKTKDGKTAL 270
                  +    +T L
Sbjct: 190 LYPCLILEDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.2 bits (200), Expect = 7e-18
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 16/204 (7%)

Query: 91  DDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEERE 150
           +DD  +G           D E   +      +G   T       D L    ++++     
Sbjct: 1   NDDINKGP--------SGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSP 52

Query: 151 ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV 210
           ++N N      K+     R L      M       L +   + +S          +    
Sbjct: 53  VVNDNEQKM--KLEAFLQRLLFPEIQEMPTS----LNNDSSNRNSEGGSSNQQQQHVSFD 106

Query: 211 GAMQSV-KLLIKYNVDVNVA-DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT 268
             +Q V        +++N+  D  G TPLH      N ++ K L+ +G+++      G++
Sbjct: 107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166

Query: 269 ALDMSLCYGRDFKSYDLAKLLKIL 292
            L  ++    ++ S     LL  L
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYL 190

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 140 VEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD 199
           ++ L+    ++      +    K   +K            +  +D+       +++ D +
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEK--ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282

Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           G T L+ A ++G +  V  L+ Y  D  +A+  G  P+      
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN----VDVNVADNEGWTPLH 238
           M  ++           +               S+   +         +N  D+ G T L+
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288

Query: 239 IAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 271
           IA +  N  I   LL  GAD     K G   +D
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.7 bits (139), Expect = 9e-10
 Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 21/130 (16%)

Query: 177 SMQIRYMDMLLD-GGLDIDSVDKDGATPLHYAVQVGAMQS------------VKLLIKYN 223
           +      + LLD     +   D    T LH+ +    M              +  ++K  
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236

Query: 224 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR----KTKDGKTALDMSLCYGRD 279
                +                +D     L      +     +  +G T L+++   G  
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG-- 294

Query: 280 FKSYDLAKLL 289
             +  +   L
Sbjct: 295 --NISIVDAL 302

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 84.4 bits (209), Expect = 3e-19
 Identities = 42/192 (21%), Positives = 61/192 (31%), Gaps = 45/192 (23%)

Query: 119 AAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM 178
           A A  +         E LL  +++  +        +          T     L    L++
Sbjct: 20  AVAQSNCQEL-----ESLLPFLQRSKK--------RLTDSEFKDPET-GKTCLLKAMLNL 65

Query: 179 QIRYMD---MLLDGGLDIDSV-----------DKDGATPLHYAVQVGAMQSVKLLIKYNV 224
                D   +LLD     DS+              G T LH A++   M  V LL++   
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 225 DVNVADNE--------------GWTPLHIAIQSRNRDIAKVLLING---ADKSRKTKDGK 267
           DV  A N               G  PL +A  +    I K LL N    AD S +   G 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 268 TALDMSLCYGRD 279
           T L   +    +
Sbjct: 186 TVLHALVEVADN 197

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 37/138 (26%)

Query: 185 MLLDGGLDIDSVDKD--------------GATPLHYAVQVGAMQSVKLLIK---YNVDVN 227
           +L++ G D+ +                  G  PL  A     +  VK L++      D++
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLI----------------NGADKSRKTKDGKTALD 271
             D+ G T LH  ++  +  +     +                    +    + G T L 
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238

Query: 272 MSLCYGRDFKSYDLAKLL 289
           ++   G+      +   +
Sbjct: 239 LAASSGK----IGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.5 bits (191), Expect = 9e-17
 Identities = 29/139 (20%), Positives = 48/139 (34%), Gaps = 33/139 (23%)

Query: 180 IRYMDMLLDGGLDIDSVDKD-GATPLHYAV---QVGAMQSVKLLIKY-----------NV 224
           + ++        D +  D + G T L  A+     G   ++ LL+             N 
Sbjct: 33  LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA 92

Query: 225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD--------------GKTAL 270
               +  +G T LHIAI+ RN  +  +L+ NGAD                     G+  L
Sbjct: 93  SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152

Query: 271 DMSLCYGRDFKSYDLAKLL 289
            ++ C         + K L
Sbjct: 153 SLAACTN----QLAIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.9 bits (179), Expect = 4e-15
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 26/112 (23%)

Query: 185 MLLDGGL---DIDSVDKDGATPLHYAVQVG-----------AMQS-----VKLLIKYNVD 225
            LL       DI + D  G T LH  V+V            +M +        L      
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225

Query: 226 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 277
             + + +G TPL +A  S    +   +L                   +  + 
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.0 bits (148), Expect = 6e-11
 Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 26/122 (21%)

Query: 190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY-------NVDVNVADNE-GWTPLHIA- 240
                         +  AV     Q ++ L+ +         D    D E G T L  A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 241 --IQSRNRDIAKVLLINGADKSR-----------KTKDGKTALDMSLCYGRDFKSYDLAK 287
             + +   D   +LL                       G+TAL +++          L  
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN----MTLVT 118

Query: 288 LL 289
           LL
Sbjct: 119 LL 120

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 7/62 (11%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 245
           L       +  ++ G TPL  A   G +  +  +++        +       H A    +
Sbjct: 219 LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ-------REIHEPECRHAAAHHHH 271

Query: 246 RD 247
             
Sbjct: 272 HH 273

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 192 DIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN--------------EGWTPL 237
               V   G T LH A++      V+LL++   DV+                   G  PL
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144

Query: 238 HIAIQSRNRDIAKVLLING---ADKSRKTKDGKTALDMSLCYGRDFK 281
            +A  +    I   L  NG   AD  R+   G T L   +    + +
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR 191

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 36/136 (26%)

Query: 186 LLDGGLDIDSVD----KDGATPLHYAV---QVGAMQSVKLLIKY-----------NVDVN 227
           LL     +   +      G T L  A+     G   ++ +L+             N    
Sbjct: 28  LLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK--------------DGKTALDMS 273
                G T LHIAI+ R +   ++L+  GAD   + +               G+  L ++
Sbjct: 88  DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147

Query: 274 LCYGRDFKSYDLAKLL 289
            C         +   L
Sbjct: 148 ACTN----QPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 19/94 (20%)

Query: 184 DMLLDGGL---DIDSVDKDGATPLHYAVQVG---------AMQSVKLLIKYNVDVN---- 227
             L + G    D+   D  G T LH  V +            +   LL+     +     
Sbjct: 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216

Query: 228 ---VADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
              + +N+G +PL +A ++    I + ++     
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 26/110 (23%)

Query: 202 TPLHYAVQVGAMQS----VKLLIKYNVDVNVAD----NEGWTPLHIAIQSRNR---DIAK 250
             L   V  G+       +  L+ +   +   +    + G T L  A+ + +    D   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 251 VLLINGADKSR-----------KTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +LL                       G+TAL +++            +LL
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR----CKHYVELL 112

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 184 DMLLDGGLDIDS-------VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 231
           D+LL     +         ++ DG +PL  A + G +   + +I+  +    A +
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.4 bits (201), Expect = 3e-18
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 16/108 (14%)

Query: 192 DIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-------------GWTPLH 238
                   G + LH A++  ++Q VKLL++   DV++                 G  PL 
Sbjct: 82  QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141

Query: 239 IAIQSRNRDIAKVLLING---ADKSRKTKDGKTALDMSLCYGRDFKSY 283
           +A  ++  D+   LL N    A        G T L   +    +    
Sbjct: 142 LAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPEN 189

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.8 bits (197), Expect = 9e-18
 Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 36/143 (25%)

Query: 179 QIRYMDMLLDGGLDIDSVD-------------KDGATPLHYAVQVGAMQSVKLLIK---Y 222
            ++ + +L++ G D+                   G  PL  A        V  L++    
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161

Query: 223 NVDVNVADNEGWTPLHIAIQSRNR----------------DIAKVLLINGADKSRKTKDG 266
              +   D+ G T LH  +   +                  +   L      +      G
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQG 221

Query: 267 KTALDMSLCYGRDFKSYDLAKLL 289
            T L ++   G+     ++ + +
Sbjct: 222 LTPLKLAAKEGK----IEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 31/125 (24%)

Query: 192 DIDSVDKDGATPLHYAV---QVGAMQSVKLLIKY-----------NVDVNVADNEGWTPL 237
              +    G T L  AV   Q G    +  L++            N        +G + L
Sbjct: 35  SAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL 94

Query: 238 HIAIQSRNRDIAKVLLINGADKSRKT-------------KDGKTALDMSLCYGRDFKSYD 284
           HIAI+ R+    K+L+ NGAD   +                G+  L ++ C       +D
Sbjct: 95  HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK----QWD 150

Query: 285 LAKLL 289
           +   L
Sbjct: 151 VVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 19/94 (20%)

Query: 184 DMLLDGGL---DIDSVDKDGATPLH----------------YAVQVGAMQSVKLLIKYNV 224
             LL+       +++ D  G T LH                  +  G +Q    L     
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212

Query: 225 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
              +++++G TPL +A +    +I + +L     
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 26/110 (23%)

Query: 202 TPLHYAVQVGAMQSVKLLIKY--------NVDVNVADNEGWTPLHIAIQSRNR---DIAK 250
             L   V  G  + +  L++Y                + G T L  A+ +          
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 251 VLL-----------INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            LL           +  A  + +   G +AL +++            KLL
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS----LQCVKLL 109

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 9/69 (13%), Positives = 23/69 (33%)

Query: 165 TAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV 224
           + +   L        ++    L       +  +  G TPL  A + G ++  + +++   
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245

Query: 225 DVNVADNEG 233
               A +  
Sbjct: 246 SGAAAHHHH 254

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 80.8 bits (199), Expect = 6e-18
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 177 SMQIRYMDMLLDGGLDIDSVDK------DGATPLHYAVQVG---AMQSVKLLIKYNVDVN 227
           +  I  +      G+D+              T LH AV+     ++  V  L++ + +++
Sbjct: 140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 199

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
               +G T LH    + N +  K+LL   A      + G+T LD      +  K     +
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD----IAKRLKHEHCEE 255

Query: 288 LL 289
           LL
Sbjct: 256 LL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.8 bits (186), Expect = 3e-16
 Identities = 19/75 (25%), Positives = 37/75 (49%)

Query: 179 QIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH 238
            +  +D L+    ++D     G+T LHY       + +KLL++    + +A+  G TPL 
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243

Query: 239 IAIQSRNRDIAKVLL 253
           IA + ++    ++L 
Sbjct: 244 IAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 150 EILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ 209
           + L QN+  NL K +      L    L+     + +LL G   I+  ++ G TPL  A +
Sbjct: 189 DFLVQNS-GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247

Query: 210 VGAMQSVKLLIKY 222
           +      +LL + 
Sbjct: 248 LKHEHCEELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 79.6 bits (196), Expect = 2e-17
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 199 DGATPLHYAVQVGAMQS---VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 255
                LH AV+V    S   V  +I+    ++    +G T LH A      D  K+LL  
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 256 GADKSRKTKDGKTALDMSLCYG 277
            A      + G+TALD++    
Sbjct: 249 RALVGTVNEAGETALDIARKKH 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 74.6 bits (183), Expect = 1e-15
 Identities = 21/70 (30%), Positives = 35/70 (50%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           +D ++  G  +D+   DG T LHYA        +KLL+K    V   +  G T L IA +
Sbjct: 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268

Query: 243 SRNRDIAKVL 252
             +++  ++L
Sbjct: 269 KHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVN------VADNEGWTPLHIAIQSRNRD--- 247
                  L  A+    + SV        D         A       LH+A++  N+    
Sbjct: 148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 207

Query: 248 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +   ++ NG     K  DG TAL  +  Y +     D  KLL
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQ----PDCLKLL 245

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 150 EILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ 209
           + + QN   +L   +      L    L  Q   + +LL G   + +V++ G T L  A +
Sbjct: 210 DFIIQNGG-HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268

Query: 210 VGAMQSVKLLI-----KYNVDVNV 228
               +  +LL       +   ++V
Sbjct: 269 KHHKECEELLEQAQAGTFAFPLHV 292

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 76.0 bits (186), Expect = 8e-16
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 1/135 (0%)

Query: 146 PEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLH 205
           P   + L   A  N          PL   T +  +   + LL  G +++  D  G  PLH
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273

Query: 206 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 265
           +A  +G      L +K   D+   D+EG  PL IA+++ N DI  +L +    ++     
Sbjct: 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA-AQ 332

Query: 266 GKTALDMSLCYGRDF 280
           G+   +  L   RDF
Sbjct: 333 GQAGDETYLDIFRDF 347

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 27/149 (18%), Positives = 50/149 (33%), Gaps = 10/149 (6%)

Query: 147 EEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATP--- 203
            E++ L +       +    + R    +     IR     L    +  S D     P   
Sbjct: 143 VEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGAL 202

Query: 204 -LHYAVQVGAMQSVKLLIKYNVDVN--VADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 260
               +    ++ ++   + +  DVN      +  TPL  A  + +    + LL NGA+ +
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 261 RKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +    G+  L  +   G       LA L 
Sbjct: 263 QADSAGRGPLHHATILGH----TGLACLF 287

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.2 bits (182), Expect = 3e-15
 Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD--NEGWTPLHIAIQS 243
           LL     +  +  +       A + G +  +  L +      +A    E +    +A ++
Sbjct: 114 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN 173

Query: 244 RNRDIAKVLLINGADKSRKT--KDGKTALDMS 273
            +  +   L      ++      +   A   +
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 10/89 (11%)

Query: 188 DGGLDI--DSVDKDGATPLHYAVQVGAMQSVKLL--------IKYNVDVNVADNEGWTPL 237
           DG  D+   S    G   L   ++      +  +        IK          +    L
Sbjct: 264 DGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL 323

Query: 238 HIAIQSRNRDIAKVLLINGADKSRKTKDG 266
            +A++  N+    +LL   +  +    + 
Sbjct: 324 RLALRLGNQGACALLLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 5/84 (5%)

Query: 192 DIDSVDKDGATPLHYAVQVGAMQS---VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 248
           D              A   G   +   + LL+  +  V V   E +    +A ++ +  +
Sbjct: 84  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV 143

Query: 249 AKVLLINGADKSRKTK--DGKTAL 270
              L      +       +   A 
Sbjct: 144 LNRLCELAPTEIMAMIQAENYHAF 167

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 187 LDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR 246
           +       ++  D    L  A+++G   +  LL+     + +         +I       
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINETGGRL 362

Query: 247 DIAKVLLINGA 257
           D+  V L +  
Sbjct: 363 DLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 25/125 (20%)

Query: 186 LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG------------ 233
           LLD  + +   +          V     + V  L + +    +++ +G            
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277

Query: 234 -WTPLHIAIQSRNRDIAKVL--------LINGADKSRKTKDGKTALDMSLCYGRDFKSYD 284
            +  L   I+  +  +   +        +   A  +    D    L ++L  G       
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGN----QG 333

Query: 285 LAKLL 289
              LL
Sbjct: 334 ACALL 338

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 74.2 bits (182), Expect = 4e-15
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 197 DKDGATPLHYAVQVGAMQS---VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
                  LH AV+V    S   V  +I+    ++    +G T LH A      D  K+LL
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227

Query: 254 INGADKSRKTKDGKTALDMS 273
              A      + G+TALD++
Sbjct: 228 KGRALVGTVNEAGETALDIA 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 58.0 bits (140), Expect = 9e-10
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 184 DMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 243
           D ++  G  +D+   DG T LHYA        +KLL+K    V   +  G T L IA + 
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250

Query: 244 RNRDIAKVL 252
            +++  ++L
Sbjct: 251 HHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 204 LHYAVQVGAMQSVKLLIKYNVDVN------VADNEGWTPLHIAIQSRNRD---IAKVLLI 254
           L  A+    + SV        D         A       LH+A++  N+    +   ++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 255 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           NG     K  DG TAL     Y   +   D  KLL
Sbjct: 196 NGGHLDAKAADGNTALH----YAALYNQPDCLKLL 226

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 73/242 (30%)

Query: 33  SKVLVSSRQGSV-----GLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEY 87
            K+L+++R   V       + T   L          + ++LL                +Y
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---------------LKY 310

Query: 88  DDDDDDDEEGEVKE-NDLDFESDWEEERSGIGAAASGDAAT--TISKYEEDLLKEVEQL- 143
            D    D   EV   N            S I  +     AT         D L  + +  
Sbjct: 311 LDCRPQDLPREVLTTNPRRL--------SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 144 ---LEPEE-RE------ILNQNATPNLGKISTAKWRPLQTLTL---------SMQIRYMD 184
              LEP E R+      +   +A      I      P   L+L          M +  ++
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSA-----HI------PTILLSLIWFDVIKSDVMVV--VN 409

Query: 185 MLLDGGLDIDSVDKDGATPLH-----YAVQVGAMQSV--KLLIKYNVDVNVADNEGWTPL 237
            L    L ++   K+    +        V++    ++   ++  YN+     D++   P 
Sbjct: 410 KLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPP 467

Query: 238 HI 239
           ++
Sbjct: 468 YL 469

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=3.7e-35  Score=240.05  Aligned_cols=159  Identities=30%  Similarity=0.474  Sum_probs=151.4

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  209 (295)
                      +.+.+.|+.|+..|+.+.++.||+.|++++..  |..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+.
T Consensus         2 sdlg~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~--d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            2 SELGKRLIEAAENGNKDRVKDLIENGADVNAS--DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             CHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHH
Confidence            45677899999999999999999999998864  8899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          210 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      .|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+.+|+    .+|+++|
T Consensus        80 ~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~----~~iv~~L  155 (169)
T 4gpm_A           80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN----EEVVKLL  155 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHH
T ss_pred             cCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999997    8999999


Q ss_pred             hhcCC
Q 022566          290 KILPV  294 (295)
Q Consensus       290 ~~lp~  294 (295)
                      .+..+
T Consensus       156 l~~GA  160 (169)
T 4gpm_A          156 EKQGG  160 (169)
T ss_dssp             HTC--
T ss_pred             HHCCC
Confidence            88665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=4e-31  Score=211.46  Aligned_cols=152  Identities=29%  Similarity=0.361  Sum_probs=145.8

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ....|+.|+..++.+.++.|++.|.+.+   .+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            4568999999999999999999998765   4788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+    .+++++|+
T Consensus        79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~i~~~L~  153 (153)
T 1awc_B           79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN----EDLAEILQ  153 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHC
T ss_pred             hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997    89999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.4e-30  Score=211.91  Aligned_cols=156  Identities=36%  Similarity=0.552  Sum_probs=149.2

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      .....++.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            345679999999999999999999988775  488899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+    .+++++|.
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~L~  166 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN----EDLAEILQ  166 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC----HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999997    99999998


Q ss_pred             hc
Q 022566          291 IL  292 (295)
Q Consensus       291 ~l  292 (295)
                      ++
T Consensus       167 ~~  168 (169)
T 2y1l_E          167 KL  168 (169)
T ss_dssp             TC
T ss_pred             Hc
Confidence            76

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.8e-30  Score=209.06  Aligned_cols=157  Identities=24%  Similarity=0.363  Sum_probs=147.8

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      ....+++.|+..++.+.++.|++.|.+++.  .+..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNA--QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTC--CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccc--cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            456789999999999999999999888765  48889999999999 999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+.+|+    .+++++|
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~----~~~~~~L  156 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLM  156 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC----HHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC----HHHHHHH
Confidence            999999999999999999999999999999999999999999999998 69999999999999999997    9999999


Q ss_pred             hhcCC
Q 022566          290 KILPV  294 (295)
Q Consensus       290 ~~lp~  294 (295)
                      .+..+
T Consensus       157 l~~GA  161 (162)
T 1ihb_A          157 QANGA  161 (162)
T ss_dssp             HHTC-
T ss_pred             HHhCC
Confidence            87654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=7.9e-30  Score=206.54  Aligned_cols=152  Identities=25%  Similarity=0.303  Sum_probs=145.1

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+++.|+..++.+.++.++..+.+++.  .+..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus         5 t~L~~A~~~g~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            5 LSVHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             CCHHHHHHTTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             chHHHHHHCCCHHHHHHHHHcCCCcCC--CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            458999999999999999999877665  488999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+    .+++++|.+
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~L~~  156 (167)
T 3v31_A           83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY----RSVQQVIES  156 (167)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999997    899998864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=9.8e-30  Score=203.57  Aligned_cols=152  Identities=25%  Similarity=0.355  Sum_probs=143.6

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+++.|+..++.+.++.++.. ...+....+..|+||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            5679999999999999999998 534455568899999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|..|.||||+|+..|+    .+++++|.+
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~  154 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA----QDLVDILQG  154 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC----HHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHh
Confidence            9999999999999999999999999999999999999999999 9999999999999999999997    899999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=7.7e-30  Score=207.62  Aligned_cols=152  Identities=24%  Similarity=0.318  Sum_probs=144.2

Q ss_pred             HHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHH
Q 022566          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQ  214 (295)
Q Consensus       135 ~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~  214 (295)
                      +++.|+..++.+.++.++..+... +...+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus         5 ~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A            5 SIHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             CHHHHHHTTCHHHHHHHHTTCSGG-GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHcCCHHHHHHHHHcCccc-ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            588999999999999999987652 3445889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       215 ~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~~~~L~~  156 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY----RKVQQVIEN  156 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc----HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999997    899999865

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=6e-30  Score=206.87  Aligned_cols=158  Identities=31%  Similarity=0.412  Sum_probs=145.6

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  209 (295)
                      ......++.|+..++.+.++.++..+. .+....+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+.
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            345678999999999999999998643 4455568889999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          210 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+. |+    .+|+++|
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~----~~i~~~L  159 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GD----TDIQDLL  159 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TC----HHHHHHH
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CC----hHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999877 65    7999999


Q ss_pred             hhcC
Q 022566          290 KILP  293 (295)
Q Consensus       290 ~~lp  293 (295)
                      +.-.
T Consensus       160 ~~~g  163 (165)
T 3twr_A          160 RGDA  163 (165)
T ss_dssp             HTC-
T ss_pred             hhcc
Confidence            8754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=8.9e-30  Score=211.03  Aligned_cols=155  Identities=23%  Similarity=0.260  Sum_probs=147.6

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...+|+.|+..+..+.++.|+..+++++.  .+..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           35 NRTPLMVACMLGMENAIDKLVENFDKLED--KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             CCCHHHHHHHHTCGGGHHHHHHHHCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccccc--ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            34579999999999999999999987765  4888999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+    .+++++|.+
T Consensus       113 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~  188 (192)
T 2rfm_A          113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR----QEVIKIFTE  188 (192)
T ss_dssp             CHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC----HHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCc----HHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999997    899999976


Q ss_pred             c
Q 022566          292 L  292 (295)
Q Consensus       292 l  292 (295)
                      .
T Consensus       189 ~  189 (192)
T 2rfm_A          189 V  189 (192)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.6e-29  Score=207.38  Aligned_cols=156  Identities=24%  Similarity=0.280  Sum_probs=145.7

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCC-CCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNA-TPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~-~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ..+++.|+..++.+.++.++..+. +++  ..+..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLN--QGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCccccc--ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            456899999999999999999843 344  45889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++    .+++++|.+
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~----~~~~~~L~~  159 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR----ELLRERAEK  159 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHH----HHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHH----HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999986    899999987


Q ss_pred             cCC
Q 022566          292 LPV  294 (295)
Q Consensus       292 lp~  294 (295)
                      ..+
T Consensus       160 ~g~  162 (179)
T 3f6q_A          160 MGQ  162 (179)
T ss_dssp             TTC
T ss_pred             hhc
Confidence            654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=7.7e-30  Score=223.50  Aligned_cols=154  Identities=24%  Similarity=0.304  Sum_probs=143.0

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...+|+.|+..+..+.++.|+..+++++..  +..|.||+|+|+..++.+++++|++.|++++.+|..|+||||+|+..|
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~--~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGAR--NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCcc--CCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            345799999999999999999999988764  788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +.+++++|+++|+++|.++..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.++      +|+++|+.
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~------~i~~lL~~  237 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS------KIMELLQV  237 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC------HHHHHTTC
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC------cHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998876      46777766


Q ss_pred             cC
Q 022566          292 LP  293 (295)
Q Consensus       292 lp  293 (295)
                      ++
T Consensus       238 l~  239 (269)
T 4b93_B          238 VP  239 (269)
T ss_dssp             --
T ss_pred             HH
Confidence            54

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=1.4e-28  Score=212.77  Aligned_cols=157  Identities=20%  Similarity=0.216  Sum_probs=141.3

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCC-CCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNA-TPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~-~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      ...+|+.|+..+..+.++.|+..+. +++.  .+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus        90 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~  167 (253)
T 1yyh_A           90 GRTPLHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV  167 (253)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHSTTSCTTC--CCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCccc--cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3467888999999999999998876 4443  478899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+    .+|+++|+
T Consensus       168 ~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~----~~i~~~l~  243 (253)
T 1yyh_A          168 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH----HDIVRLLD  243 (253)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCC----HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998    89999998


Q ss_pred             hcCC
Q 022566          291 ILPV  294 (295)
Q Consensus       291 ~lp~  294 (295)
                      ..++
T Consensus       244 ~~~~  247 (253)
T 1yyh_A          244 LEHH  247 (253)
T ss_dssp             C---
T ss_pred             HHhh
Confidence            7654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=2.5e-29  Score=197.30  Aligned_cols=132  Identities=23%  Similarity=0.273  Sum_probs=125.3

Q ss_pred             CCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCC-CChH
Q 022566          158 PNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTP  236 (295)
Q Consensus       158 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~-g~Tp  236 (295)
                      +++...+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++|+++|++++.+|.. |+||
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            3445568899999999999999999999999999999999999999999999 9999999999999999999999 9999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          237 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       237 Lh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+..+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~----~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH----RDIARYLHAATG  135 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTC----HHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999997    999999987544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=4.2e-28  Score=205.46  Aligned_cols=157  Identities=23%  Similarity=0.239  Sum_probs=141.2

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCccc-CCCCCChHHHHHHHcCCHHHHHHHHhCC--CCCCccCCCCChHHHHHHH
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGK-ISTAKWRPLQTLTLSMQIRYMDMLLDGG--LDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~d~~~~d~~g~tpLh~A~~  209 (295)
                      ..+++.|+..+..+.++.|+..+++++... .+..|+||||+|+..|+.+++++|+++|  ++++..+..|.||||+|+.
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~  116 (228)
T 2dzn_A           37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG  116 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHH
Confidence            457888999999999999999997777766 7888999999999999999999999988  8888889999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHhcCCCCChHHHHHH
Q 022566          210 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING-ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKL  288 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~  288 (295)
                      .|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+    .+++++
T Consensus       117 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~----~~~v~~  192 (228)
T 2dzn_A          117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH----GDAAVL  192 (228)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC----HHHHHH
T ss_pred             cCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCC----HHHHHH
Confidence            99999999999999999999999999999999999999999999999 8999999999999999999997    899998


Q ss_pred             hh-hcC
Q 022566          289 LK-ILP  293 (295)
Q Consensus       289 L~-~lp  293 (295)
                      |. ..+
T Consensus       193 Ll~~~g  198 (228)
T 2dzn_A          193 LVEKYG  198 (228)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            87 544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=2.4e-28  Score=207.85  Aligned_cols=155  Identities=21%  Similarity=0.215  Sum_probs=142.5

Q ss_pred             cHHHHHHHHhcChHHHHHHHhc-CCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCC-----CccCCCCChHHHH
Q 022566          133 EEDLLKEVEQLLEPEEREILNQ-NATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI-----DSVDKDGATPLHY  206 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~-g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~-----~~~d~~g~tpLh~  206 (295)
                      ..+|+.|+..++.+.++.|+.. |.+++.  .+..|+||||+|+..|+.+++++|++.|+++     +..+..|.||||+
T Consensus         4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            4 ESPLLLAAKENDVQALSKLLKFEGCEVHQ--RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             TCHHHHHHHTTCHHHHHHHHTTTCSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCCCccc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            4578999999999999999998 877765  4889999999999999999999999999887     6677899999999


Q ss_pred             HHHhCCHHHHHHHHhCCCCCcccCC-------------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 022566          207 AVQVGAMQSVKLLIKYNVDVNVADN-------------EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS  273 (295)
Q Consensus       207 A~~~g~~~~v~~Ll~~ga~in~~d~-------------~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A  273 (295)
                      |+..|+.+++++|+++|++++..+.             .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998765             799999999999999999999999999999999999999999


Q ss_pred             HhcCCCCChHHHH----HHhhhcC
Q 022566          274 LCYGRDFKSYDLA----KLLKILP  293 (295)
Q Consensus       274 ~~~g~~~~~~~iv----~~L~~lp  293 (295)
                      +..|+    .+++    ++|....
T Consensus       162 ~~~~~----~~~~~~i~~~Ll~~g  181 (232)
T 2rfa_A          162 ILQPN----KTFACQMYNLLLSYD  181 (232)
T ss_dssp             HTCSC----HHHHHHHHHHHHHTT
T ss_pred             HHcCC----hHHHHHHHHHHHhcC
Confidence            99998    6666    8887654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.96  E-value=5.2e-28  Score=205.47  Aligned_cols=153  Identities=22%  Similarity=0.275  Sum_probs=96.0

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+|+.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus        42 t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  119 (231)
T 3aji_A           42 TALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH  119 (231)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCcHHHHHHHHHhCCCCCC--cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            345666666666666666666555443  355566666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      +++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+.
T Consensus       120 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~  194 (231)
T 3aji_A          120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER----VEEAKFLVTQ  194 (231)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCC----HHHHHHHHHC
Confidence            66666666666666666666666666666666666666666666666666666666666666665    5666666544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=7.3e-28  Score=212.35  Aligned_cols=157  Identities=22%  Similarity=0.301  Sum_probs=145.0

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ....++.|+..++.+.++.|+..|++++.  .+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTC--BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            45679999999999999999999988776  4888999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCC------------------------------------------------------------
Q 022566          212 AMQSVKLLIKYNVDVNVADN------------------------------------------------------------  231 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~------------------------------------------------------------  231 (295)
                      +.+++++|+++|++++..+.                                                            
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence            99999999999998876553                                                            


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          232 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       232 ~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+    .+++++|.+...
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~~ga  256 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK----EEACRILVENLC  256 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCC----HHHHHHHHHcCC
Confidence            47788999999999999999999999999999999999999999997    899999987653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=2.1e-28  Score=213.52  Aligned_cols=156  Identities=24%  Similarity=0.275  Sum_probs=143.4

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCC--------------------
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLD--------------------  192 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d--------------------  192 (295)
                      ..+|+.|+..+..+.++.|++.|++++..  +..|+||||+|+..|+.+++++|+++|++                    
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           46 QTALHLAAILGEASTVEKLYAAGAGVLVA--ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            46789999999999999999999888764  78899999999999999999999998765                    


Q ss_pred             ---------------------------CCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCC-CChHHHHHHHcC
Q 022566          193 ---------------------------IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSR  244 (295)
Q Consensus       193 ---------------------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~-g~TpLh~A~~~g  244 (295)
                                                 ++..+..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  203 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (282)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC
Confidence                                       6677889999999999999999999999999999999864 999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       245 ~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      +.+++++|+++|++++.+|..|.||||+|+..|+    .+|+++|.+..+
T Consensus       204 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~~ga  249 (282)
T 1oy3_D          204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPN----PILARLLRAHGA  249 (282)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC----HHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC----cHHHHHHHHcCC
Confidence            9999999999999999999999999999999997    899999987654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.96  E-value=3.3e-28  Score=210.40  Aligned_cols=157  Identities=27%  Similarity=0.314  Sum_probs=148.9

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCChHHHHHHHh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL-DIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpLh~A~~~  210 (295)
                      ...+|+.|+..+..+.++.|++.|++++..  +..|+||||+|+..|+.+++++|++.|. +++..+..|.||||+|+..
T Consensus        57 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  134 (253)
T 1yyh_A           57 GETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL  134 (253)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHc
Confidence            346799999999999999999999988764  8899999999999999999999999987 8999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.
T Consensus       135 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~----~~~v~~Ll  210 (253)
T 1yyh_A          135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS----YETAKVLL  210 (253)
T ss_dssp             TCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCC----HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999997    89999998


Q ss_pred             hcCC
Q 022566          291 ILPV  294 (295)
Q Consensus       291 ~lp~  294 (295)
                      +..+
T Consensus       211 ~~ga  214 (253)
T 1yyh_A          211 DHFA  214 (253)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            7653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=216.25  Aligned_cols=155  Identities=25%  Similarity=0.288  Sum_probs=130.0

Q ss_pred             HHHHHHHHhcCh-HHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          134 EDLLKEVEQLLE-PEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       134 ~~l~~ai~~~~~-~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      .+++.++..+.. ..+..|+..|+++|..  +..|+||||+|+..|+.+++++|++.|++++..+..|.||+|+|+..++
T Consensus        54 t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~--d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~  131 (269)
T 4b93_B           54 HPLCQCPKCAPAQKRLAKVPASGLGVNVT--SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGH  131 (269)
T ss_dssp             ---------------------CCCCTTCC--CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHhCCHHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccCh
Confidence            345555554443 4677888999988764  8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+    .+++++|.+.
T Consensus       132 ~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~  207 (269)
T 4b93_B          132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH----VFVVELLLLH  207 (269)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC----HHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCC----HHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999999999999999999997    9999999876


Q ss_pred             CC
Q 022566          293 PV  294 (295)
Q Consensus       293 p~  294 (295)
                      .+
T Consensus       208 Ga  209 (269)
T 4b93_B          208 GA  209 (269)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=8.6e-28  Score=203.05  Aligned_cols=156  Identities=20%  Similarity=0.228  Sum_probs=143.9

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCC-CCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNA-TPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~-~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ..+++.|+..+..+.++.|+..+. +++.  .+..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus        59 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  136 (223)
T 2f8y_A           59 RTPLHAAVSADAQGVFQILIRNRATDLDA--RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN  136 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHBTTSCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC
Confidence            457889999999999999998876 4443  4788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+    .+|+++|.+
T Consensus       137 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~i~~~L~~  212 (223)
T 2f8y_A          137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH----HDIVRLLDE  212 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc----hHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999997    899999987


Q ss_pred             cCC
Q 022566          292 LPV  294 (295)
Q Consensus       292 lp~  294 (295)
                      ...
T Consensus       213 ~g~  215 (223)
T 2f8y_A          213 YNL  215 (223)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=5.9e-28  Score=200.84  Aligned_cols=154  Identities=25%  Similarity=0.347  Sum_probs=144.0

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHH-hCCCCCCccCCCCChHHHHHHHhC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLL-DGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll-~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ..+++.|+..+..+.++.|++.|++++..  +..|+||||+|+..|+.+++++|+ ..+++++..+..|.||||+|+..|
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  117 (201)
T 3hra_A           40 NTPLNIAVHNNDIEIAKALIDRGADINLQ--NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG  117 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcC
Confidence            34789999999999999999999988764  888999999999999999999999 678899999999999999999999


Q ss_pred             CHHHHHHHHhCC-CCCcccCCCCChHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHH
Q 022566          212 AMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRN-----RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL  285 (295)
Q Consensus       212 ~~~~v~~Ll~~g-a~in~~d~~g~TpLh~A~~~g~-----~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~i  285 (295)
                      +.+++++|+++| ++++.++..|+||||+|+..++     .+++++|+++|++++.+|..|.||||+|+..|+    .++
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~  193 (201)
T 3hra_A          118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY----TEI  193 (201)
T ss_dssp             CHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHH
T ss_pred             CHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC----HhH
Confidence            999999999998 9999999999999999999998     999999999999999999999999999999997    899


Q ss_pred             HHHhhhc
Q 022566          286 AKLLKIL  292 (295)
Q Consensus       286 v~~L~~l  292 (295)
                      +++|.+.
T Consensus       194 ~~~Ll~~  200 (201)
T 3hra_A          194 SKILAQY  200 (201)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhc
Confidence            9999865

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.96  E-value=1.1e-27  Score=202.38  Aligned_cols=157  Identities=27%  Similarity=0.312  Sum_probs=148.3

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCChHHHHHHHh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL-DIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpLh~A~~~  210 (295)
                      ...+++.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  102 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL  102 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH
T ss_pred             CCchHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh
Confidence            35679999999999999999999988876  48899999999999999999999999887 8999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      |+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.
T Consensus       103 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll  178 (223)
T 2f8y_A          103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS----YETAKVLL  178 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC----HHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCC----HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999997    89999998


Q ss_pred             hcCC
Q 022566          291 ILPV  294 (295)
Q Consensus       291 ~lp~  294 (295)
                      +..+
T Consensus       179 ~~ga  182 (223)
T 2f8y_A          179 DHFA  182 (223)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            7643

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=4.4e-28  Score=211.43  Aligned_cols=159  Identities=21%  Similarity=0.265  Sum_probs=146.6

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCC-cccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPN-LGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~-~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      -..+|+.|+..+..+.++.|+..+++++ +...+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~   88 (282)
T 1oy3_D            9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV   88 (282)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            3457999999999999999999998854 455688999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCC-----------------------------------------------CcccCCCCChHHHHHHHc
Q 022566          211 GAMQSVKLLIKYNVD-----------------------------------------------VNVADNEGWTPLHIAIQS  243 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~-----------------------------------------------in~~d~~g~TpLh~A~~~  243 (295)
                      |+.+++++|+++|++                                               ++.++..|+||||+|+..
T Consensus        89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  168 (282)
T 1oy3_D           89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH  168 (282)
T ss_dssp             TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHT
T ss_pred             CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHc
Confidence            999999999998765                                               677889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          244 RNRDIAKVLLINGADKSRKTKD-GKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~~~~d~~-g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      |+.+++++|+++|++++.++.. |.||||+|+..|+    .+++++|....+
T Consensus       169 g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~----~~~v~~Ll~~ga  216 (282)
T 1oy3_D          169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA----ASVLELLLKAGA  216 (282)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            9999999999999999999865 9999999999997    999999987643

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=3e-29  Score=208.06  Aligned_cols=152  Identities=16%  Similarity=0.087  Sum_probs=136.4

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCH----HHHHHHHhCCCCCCccCCCCChHHHHHHH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQI----RYMDMLLDGGLDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~----~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  209 (295)
                      ..++.|+..++.+.++.++..+.+.  . .+..|+||||+|+..|+.    +++++|+++|++++.+|..|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~--~-~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED--K-ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC--H-HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc--c-cccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            4689999999999999999876432  1 136799999999999975    59999999999999999999999999999


Q ss_pred             hCC------HHHHHHHHhCCCCCcccCCCCC-hHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHhc
Q 022566          210 VGA------MQSVKLLIKYNVDVNVADNEGW-TPLHIAIQSR-----NRDIAKVLLI-NGADKSRKTKDGKTALDMSLCY  276 (295)
Q Consensus       210 ~g~------~~~v~~Ll~~ga~in~~d~~g~-TpLh~A~~~g-----~~~iv~~Ll~-~gad~~~~d~~g~TpL~~A~~~  276 (295)
                      .++      .+++++|+++|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|++++.+|..|.||||+|+..
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~  164 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC  164 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence            987      6889999999999999999999 9999999944     4579999999 9999999999999999999999


Q ss_pred             CCCCChHHHHHHhhhc
Q 022566          277 GRDFKSYDLAKLLKIL  292 (295)
Q Consensus       277 g~~~~~~~iv~~L~~l  292 (295)
                      |+    .+++++|..+
T Consensus       165 ~~----~~~v~~L~~~  176 (186)
T 3t8k_A          165 QK----PIALKMMEDY  176 (186)
T ss_dssp             TC----HHHHHHHHHH
T ss_pred             CC----HHHHHHHHHH
Confidence            98    8999988653

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=8.1e-28  Score=204.61  Aligned_cols=156  Identities=21%  Similarity=0.223  Sum_probs=143.9

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCc---ccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCC-----------
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNL---GKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK-----------  198 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~---~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~-----------  198 (295)
                      ..+|+.|+..+..+.++.|++.++++..   ...+..|+||||+|+..|+.+++++|+++|++++..+.           
T Consensus        38 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~  117 (232)
T 2rfa_A           38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL  117 (232)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeeccccc
Confidence            4579999999999999999999987532   34577899999999999999999999999999998765           


Q ss_pred             --CCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHH----HHHHHcCCCC------CCCCCCC
Q 022566          199 --DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA----KVLLINGADK------SRKTKDG  266 (295)
Q Consensus       199 --~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv----~~Ll~~gad~------~~~d~~g  266 (295)
                        .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++    ++|+++|+++      +.+|..|
T Consensus       118 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g  197 (232)
T 2rfa_A          118 IYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG  197 (232)
T ss_dssp             CCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTS
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCC
Confidence              799999999999999999999999999999999999999999999999988    9999999998      5899999


Q ss_pred             CCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          267 KTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       267 ~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      .||||+|+..|+    .+++++|.+.
T Consensus       198 ~tpl~~A~~~g~----~~~v~~Ll~~  219 (232)
T 2rfa_A          198 LTPFKLAGVEGN----IVMFQHLMQK  219 (232)
T ss_dssp             CCHHHHHHHHTC----HHHHHHHHHH
T ss_pred             CCHHHHHHHcCC----HHHHHHHHhc
Confidence            999999999997    9999999653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1.7e-28  Score=212.15  Aligned_cols=157  Identities=17%  Similarity=0.186  Sum_probs=144.5

Q ss_pred             hcHHHHHHHHh---cChHHHHHHHhcCCCCCcc---------cCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCC
Q 022566          132 YEEDLLKEVEQ---LLEPEEREILNQNATPNLG---------KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD  199 (295)
Q Consensus       132 ~~~~l~~ai~~---~~~~~~~~lL~~g~~~~~~---------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~  199 (295)
                      ...+|+.|+..   +..+.++.|++.|++++..         ..+..|+||||+|+..|+.+++++|+++|++++..+..
T Consensus        43 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  122 (256)
T 2etb_A           43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG  122 (256)
T ss_dssp             TBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCS
T ss_pred             CCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccc
Confidence            34578999998   9999999999998876522         24577999999999999999999999999999999886


Q ss_pred             -------------CChHHHHHHHhCCHHHHHHHHh---CCCCCcccCCCCChHHHHHHH--cCCHH-------HHHHHHH
Q 022566          200 -------------GATPLHYAVQVGAMQSVKLLIK---YNVDVNVADNEGWTPLHIAIQ--SRNRD-------IAKVLLI  254 (295)
Q Consensus       200 -------------g~tpLh~A~~~g~~~~v~~Ll~---~ga~in~~d~~g~TpLh~A~~--~g~~~-------iv~~Ll~  254 (295)
                                   |.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|++
T Consensus       123 ~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~  202 (256)
T 2etb_A          123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ  202 (256)
T ss_dssp             GGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH
Confidence                         9999999999999999999999   999999999999999999999  88888       9999999


Q ss_pred             cCCCC-------CCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          255 NGADK-------SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       255 ~gad~-------~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      +|+++       +.+|..|.||||+|+..|+    .+++++|.+.
T Consensus       203 ~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~  243 (256)
T 2etb_A          203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGK----IEIFRHILQR  243 (256)
T ss_dssp             HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC----HHHHHHHHHH
T ss_pred             cCCCcccccccccccCCCCCCHHHHHHHhCC----HHHHHHHHhC
Confidence            99999       9999999999999999997    9999999753

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=5.2e-28  Score=189.71  Aligned_cols=125  Identities=37%  Similarity=0.503  Sum_probs=120.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHc
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  243 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~  243 (295)
                      ...+.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.++
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~----~~~~~~Ll~~  135 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN----EDLAEILQKL  135 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCC----HHHHHHHHHc
Confidence            99999999999999999999999999999999997    9999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=2.4e-28  Score=208.77  Aligned_cols=157  Identities=24%  Similarity=0.289  Sum_probs=146.5

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCC------CCccCCCCChHHH
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLD------IDSVDKDGATPLH  205 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d------~~~~d~~g~tpLh  205 (295)
                      ...+|+.|+..+..+.++.|+..|++++.  .+..|+||||+|+..|+.+++++|++.|++      ++..+..|.||||
T Consensus        45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  122 (236)
T 1ikn_D           45 QQTPLHLAVITNQPEIAEALLGAGCDPEL--RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  122 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHCCCSCCCCSCC--CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence            34679999999999999999999988876  488999999999999999999999999876      5667888999999


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHH
Q 022566          206 YAVQVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD  284 (295)
Q Consensus       206 ~A~~~g~~~~v~~Ll~~ga~in~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~  284 (295)
                      +|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+
T Consensus       123 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~----~~  198 (236)
T 1ikn_D          123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS----TR  198 (236)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC----HH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc----hH
Confidence            99999999999999999999999998 99999999999999999999999999999999999999999999997    99


Q ss_pred             HHHHhhhcCC
Q 022566          285 LAKLLKILPV  294 (295)
Q Consensus       285 iv~~L~~lp~  294 (295)
                      ++++|.+..+
T Consensus       199 ~~~~Ll~~ga  208 (236)
T 1ikn_D          199 IQQQLGQLTL  208 (236)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHHcch
Confidence            9999987654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=1.9e-27  Score=197.81  Aligned_cols=160  Identities=24%  Similarity=0.237  Sum_probs=146.0

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCC-CCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNA-TPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~-~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ..+++.|+..++.+.++.++..+. +++.  .+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            457999999999999999998876 5554  5889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHH-hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHhcCCC-CChHHHHHH
Q 022566          212 AMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING-ADKSRKTKDGKTALDMSLCYGRD-FKSYDLAKL  288 (295)
Q Consensus       212 ~~~~v~~Ll-~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g-ad~~~~d~~g~TpL~~A~~~g~~-~~~~~iv~~  288 (295)
                      +.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..+.. ....+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999 568899999999999999999999999999999999 99999999999999999998852 123799999


Q ss_pred             hhhcCC
Q 022566          289 LKILPV  294 (295)
Q Consensus       289 L~~lp~  294 (295)
                      |.+..+
T Consensus       164 Ll~~ga  169 (201)
T 3hra_A          164 LMENGA  169 (201)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            987643

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=9.6e-28  Score=195.93  Aligned_cols=122  Identities=34%  Similarity=0.513  Sum_probs=118.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHH
Q 022566          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  248 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~i  248 (295)
                      ++|+.||..|+.++|++|++.|+++|.+|..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       249 v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      +++|+++|++++.+|..|+||||+|+..|+    .+++++|.+..+
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~----~~~v~~Ll~~ga  127 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGH----KEVVKLLISKGA  127 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            999999999999999999999999999997    999999987654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=1.6e-28  Score=212.67  Aligned_cols=155  Identities=19%  Similarity=0.206  Sum_probs=141.2

Q ss_pred             cHHHHHHH---HhcChHHHHHHHhcCCC---------CCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC---
Q 022566          133 EEDLLKEV---EQLLEPEEREILNQNAT---------PNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD---  197 (295)
Q Consensus       133 ~~~l~~ai---~~~~~~~~~~lL~~g~~---------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d---  197 (295)
                      ..+|+.|+   ..+..+.++.|+..|++         .+....+..|+||||+|+..|+.++|++|+++|++++..+   
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  126 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR  126 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEEC
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccc
Confidence            45678887   67889999999998754         3344556689999999999999999999999999999998   


Q ss_pred             -----------CCCChHHHHHHHhCCHHHHHHHHh---CCCCCcccCCCCChHHHHHHHcCC---------HHHHHHHHH
Q 022566          198 -----------KDGATPLHYAVQVGAMQSVKLLIK---YNVDVNVADNEGWTPLHIAIQSRN---------RDIAKVLLI  254 (295)
Q Consensus       198 -----------~~g~tpLh~A~~~g~~~~v~~Ll~---~ga~in~~d~~g~TpLh~A~~~g~---------~~iv~~Ll~  254 (295)
                                 ..|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .+++++|++
T Consensus       127 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~  206 (260)
T 3jxi_A          127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI  206 (260)
T ss_dssp             CCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             ccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence                       689999999999999999999999   999999999999999999999888         799999999


Q ss_pred             cCCCC-------CCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          255 NGADK-------SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       255 ~gad~-------~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +|+++       +.+|..|.||||+|+..|+    .+++++|.+
T Consensus       207 ~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~  246 (260)
T 3jxi_A          207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGK----IGIFQHIIR  246 (260)
T ss_dssp             HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             hCcccccccchhhcccCCCCCHHHHHHHcCC----HHHHHHHHH
Confidence            99998       6799999999999999998    999999965

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=2.5e-27  Score=201.29  Aligned_cols=157  Identities=22%  Similarity=0.280  Sum_probs=147.1

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+++.|+..++.+.++.++..+... ....+..|+||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            34699999999999999999887653 34568899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+    .+++++|...
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~  161 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN----LKMVHILLFY  161 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC----HHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999997    9999999876


Q ss_pred             CC
Q 022566          293 PV  294 (295)
Q Consensus       293 p~  294 (295)
                      +.
T Consensus       162 g~  163 (231)
T 3aji_A          162 KA  163 (231)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=6.4e-27  Score=199.50  Aligned_cols=145  Identities=22%  Similarity=0.304  Sum_probs=108.7

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcC-CCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQN-ATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g-~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      ...+++.|+..+..+.++.|+..+ .+++.  .+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  154 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNC--QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS  154 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCccc--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC
Confidence            345677777777777777777766 44443  366677777777777777777777777777777777777777777777


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  278 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  278 (295)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus       155 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777776

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=5.6e-27  Score=200.02  Aligned_cols=151  Identities=24%  Similarity=0.314  Sum_probs=75.4

Q ss_pred             HHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCC----CCCccCCCCChHHHHHHHh
Q 022566          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL----DIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       135 ~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~----d~~~~d~~g~tpLh~A~~~  210 (295)
                      +++.|+..+..+.++.|++.|++++..  +..|+||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..
T Consensus        49 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~  126 (241)
T 1k1a_A           49 PLHLAVITTLPSVVRLLVTAGASPMAL--DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT  126 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHc
Confidence            344455555555555555544444332  4444555555555555555555555443    4444444455555555555


Q ss_pred             CCHHHHHHHHhCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          211 GAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      |+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|
T Consensus       127 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~L  202 (241)
T 1k1a_A          127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL----LPLVRTL  202 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHH
Confidence            55555555555555555444 445555555555555555555555555555555555555555555544    4555544


Q ss_pred             hh
Q 022566          290 KI  291 (295)
Q Consensus       290 ~~  291 (295)
                      .+
T Consensus       203 l~  204 (241)
T 1k1a_A          203 VR  204 (241)
T ss_dssp             HH
T ss_pred             Hh
Confidence            43

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=209.70  Aligned_cols=155  Identities=27%  Similarity=0.314  Sum_probs=145.5

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCC-CCCcccCCCCCChHHHHHH-----HcCCHHHHHHHHhCCCCCCccCCCCChHHH
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNA-TPNLGKISTAKWRPLQTLT-----LSMQIRYMDMLLDGGLDIDSVDKDGATPLH  205 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~-~~~~~~~d~~g~t~Lh~A~-----~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh  205 (295)
                      ...+|+.|+..+..+.++.|++.|+ +++.  .+..|+||||+|+     ..++.+++++|++.|.+++..+..|+||||
T Consensus       111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh  188 (276)
T 4hbd_A          111 GNTALHYSVSHANFPVVQQLLDSGVCKVDK--QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALM  188 (276)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcCCC--CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            3467999999999999999999997 6655  5889999999999     668899999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHhcCCCCChHH
Q 022566          206 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYD  284 (295)
Q Consensus       206 ~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~TpL~~A~~~g~~~~~~~  284 (295)
                      +|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+..|+    .+
T Consensus       189 ~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~----~~  264 (276)
T 4hbd_A          189 LAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ----SE  264 (276)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC----HH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC----HH
Confidence            9999999999999999999999999999999999999999999999999 899999999999999999999997    99


Q ss_pred             HHHHhhhc
Q 022566          285 LAKLLKIL  292 (295)
Q Consensus       285 iv~~L~~l  292 (295)
                      ++++|.+-
T Consensus       265 iv~~Ll~~  272 (276)
T 4hbd_A          265 IASMLYSR  272 (276)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99999754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=7.9e-28  Score=210.07  Aligned_cols=158  Identities=18%  Similarity=0.233  Sum_probs=142.8

Q ss_pred             hcHHHHHHHHh---cChHHHHHHHhcCCCC---------CcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCC-
Q 022566          132 YEEDLLKEVEQ---LLEPEEREILNQNATP---------NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK-  198 (295)
Q Consensus       132 ~~~~l~~ai~~---~~~~~~~~lL~~g~~~---------~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~-  198 (295)
                      ...+|+.|+..   +..+.++.|+..|+++         .....+..|+||||+|+..|+.+++++|+++|++++..+. 
T Consensus        54 g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  133 (273)
T 2pnn_A           54 GKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG  133 (273)
T ss_dssp             CCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCS
T ss_pred             CCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccc
Confidence            34578888875   8999999999988643         2233567899999999999999999999999999999987 


Q ss_pred             -------------CCChHHHHHHHhCCHHHHHHHHh---CCCCCcccCCCCChHHHHHHHcCC---------HHHHHHHH
Q 022566          199 -------------DGATPLHYAVQVGAMQSVKLLIK---YNVDVNVADNEGWTPLHIAIQSRN---------RDIAKVLL  253 (295)
Q Consensus       199 -------------~g~tpLh~A~~~g~~~~v~~Ll~---~ga~in~~d~~g~TpLh~A~~~g~---------~~iv~~Ll  253 (295)
                                   .|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .+++++|+
T Consensus       134 ~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll  213 (273)
T 2pnn_A          134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL  213 (273)
T ss_dssp             GGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH
Confidence                         79999999999999999999999   999999999999999999999998         89999999


Q ss_pred             HcCCCCC-------CCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          254 INGADKS-------RKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       254 ~~gad~~-------~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      ++|++++       .+|..|.||||+|+..|+    .+|+++|.+..
T Consensus       214 ~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~g  256 (273)
T 2pnn_A          214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGK----IGVLAYILQRE  256 (273)
T ss_dssp             HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC----HHHHHHHHHHH
T ss_pred             HhhhhcccccccccccCCCCCCHHHHHHHhCh----HHHHHHHHHCC
Confidence            9999997       589999999999999997    99999997653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=3.3e-28  Score=208.98  Aligned_cols=153  Identities=25%  Similarity=0.316  Sum_probs=116.7

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+|+.|+..+..+.++.++..|++++.   +..|.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred             cccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            4567888999999999999999999885   4678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHH--HhcCCCCChHHHHHHh
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK-TALDMS--LCYGRDFKSYDLAKLL  289 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~-TpL~~A--~~~g~~~~~~~iv~~L  289 (295)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+    .+++++|
T Consensus        83 ~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~----~~~~~~L  158 (239)
T 1ycs_B           83 TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY----TQCSQFL  158 (239)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTC----CCHHHHH
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhcc----HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998887 999999  67776    7899998


Q ss_pred             hhc
Q 022566          290 KIL  292 (295)
Q Consensus       290 ~~l  292 (295)
                      ...
T Consensus       159 l~~  161 (239)
T 1ycs_B          159 YGV  161 (239)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=3.1e-27  Score=181.38  Aligned_cols=125  Identities=35%  Similarity=0.580  Sum_probs=121.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC
Q 022566          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN  245 (295)
Q Consensus       166 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  245 (295)
                      +|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.++..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       246 ~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      .+++++|+++|++++.+|..|.|||++|+..|+    .+++++|.+..+
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH----LEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCc----HHHHHHHHHcCC
Confidence            999999999999999999999999999999997    999999987654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=6.7e-27  Score=206.07  Aligned_cols=151  Identities=25%  Similarity=0.268  Sum_probs=77.0

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+|+.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|++.|++++..+ .|.||||+|+..|+.
T Consensus        94 t~L~~A~~~g~~~~v~~Ll~~ga~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~  170 (285)
T 3d9h_A           94 SPLHEACLGGHLSCVKILLKHGAQVNG--VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHV  170 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSSC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCH
T ss_pred             CHHHHHHHCCcHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCH
Confidence            444455555555555555554444433  24444555555555555555555555555444322 245555555555555


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+    .+++++|.+.
T Consensus       171 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~----~~~v~~Ll~~  244 (285)
T 3d9h_A          171 ECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTAS----EELACLLMDF  244 (285)
T ss_dssp             HHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTC----HHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCC----HHHHHHHHHC
Confidence            555555555555555555555555555555555555555555555553 4455555555555554    4555555443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=1e-26  Score=198.25  Aligned_cols=158  Identities=24%  Similarity=0.280  Sum_probs=137.6

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCccCCCCChHHHHHHH
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGG-LDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpLh~A~~  209 (295)
                      ....+++.|+..+..+.++.|+..|++++..  +..|.||||+|+..|+.+++++|++.| .+++..+..|.||||+|+.
T Consensus        43 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  120 (237)
T 3b7b_A           43 DQRTPLMEAAENNHLEAVKYLIKAGALVDPK--DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE  120 (237)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC--CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence            3456788888888888888888888877653  777889999999999999999999888 7888888889999999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          210 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|
T Consensus       121 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~L  196 (237)
T 3b7b_A          121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR----YDCVVLF  196 (237)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC----HhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999987    8899988


Q ss_pred             hhcCC
Q 022566          290 KILPV  294 (295)
Q Consensus       290 ~~lp~  294 (295)
                      .+...
T Consensus       197 l~~ga  201 (237)
T 3b7b_A          197 LSRDS  201 (237)
T ss_dssp             HTTTC
T ss_pred             HHcCC
Confidence            76543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=8.4e-27  Score=197.44  Aligned_cols=155  Identities=26%  Similarity=0.272  Sum_probs=144.2

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCC--CCCCc-cCCCCChHHHHHHHh
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGG--LDIDS-VDKDGATPLHYAVQV  210 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g--~d~~~-~d~~g~tpLh~A~~~  210 (295)
                      .+|+.|+..+..+.++.|+..+..... ..+..|+||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+..
T Consensus         4 t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A            4 YPLHQACMENEFFKVQELLHSKPSLLL-QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGGGTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHhCCHHHHHHHHhcCccccc-cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence            478999999999999999999877653 25889999999999999999999999999  66666 788999999999999


Q ss_pred             CCHHHHHHHHhCC--CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHH
Q 022566          211 GAMQSVKLLIKYN--VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKL  288 (295)
Q Consensus       211 g~~~~v~~Ll~~g--a~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~  288 (295)
                      |+.+++++|+++|  ++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+    .+++++
T Consensus        83 ~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~  158 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS----LKLIEL  158 (228)
T ss_dssp             CCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC----HHHHHH
T ss_pred             CCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHH
Confidence            9999999999998  8999999999999999999999999999999999999999999999999999997    999999


Q ss_pred             hhhcC
Q 022566          289 LKILP  293 (295)
Q Consensus       289 L~~lp  293 (295)
                      |...+
T Consensus       159 Ll~~g  163 (228)
T 2dzn_A          159 LCGLG  163 (228)
T ss_dssp             HHTTT
T ss_pred             HHhcC
Confidence            98765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=3e-28  Score=191.08  Aligned_cols=125  Identities=27%  Similarity=0.295  Sum_probs=118.1

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHH
Q 022566          163 ISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       163 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~  242 (295)
                      .+..|+||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       243 ~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      .|+.+++++|+++|++++.+|..|.|||++|+..+.    .+++++|..
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~----~~~l~~l~~  130 (137)
T 3c5r_A           86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM----KSLLLLPEK  130 (137)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHH----HHHHSCC--
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccH----HHHHhhccc
Confidence            999999999999999999999999999999998874    777776654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=8.8e-28  Score=192.81  Aligned_cols=135  Identities=23%  Similarity=0.308  Sum_probs=59.1

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCCh-HHHHHHHhCC
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGAT-PLHYAVQVGA  212 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~t-pLh~A~~~g~  212 (295)
                      .+|+.|+..+..+.++.|+..|++++..  +..|+||||+|+ .|+.+++++|+++|++++.++..|+| |||+|+..|+
T Consensus        14 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~   90 (156)
T 1bi7_B           14 DWLATAAARGRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   90 (156)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCC
Confidence            3444455555555555555444443332  444445555442 44555555555555555555544544 5555555555


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD  271 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~  271 (295)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||.+
T Consensus        91 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           91 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            55555555555555555555555555555555555555555555555555554544443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=6.1e-28  Score=206.18  Aligned_cols=158  Identities=25%  Similarity=0.290  Sum_probs=141.4

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCC--CcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHh
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATP--NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~--~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      ..+|+.|+..+..+.++.|+..+...  ++...+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   88 (236)
T 1ikn_D            9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ   88 (236)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH
T ss_pred             CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            34688999999999888888876642  4455688999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCC------CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHhcCCCCChH
Q 022566          211 GAMQSVKLLIKYNVD------VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK-DGKTALDMSLCYGRDFKSY  283 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~------in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~-~g~TpL~~A~~~g~~~~~~  283 (295)
                      |+.+++++|++.|++      ++..+..|+||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+    .
T Consensus        89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~----~  164 (236)
T 1ikn_D           89 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN----P  164 (236)
T ss_dssp             TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----H
T ss_pred             CCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC----H
Confidence            999999999999876      577888999999999999999999999999999999998 99999999999997    9


Q ss_pred             HHHHHhhhcCC
Q 022566          284 DLAKLLKILPV  294 (295)
Q Consensus       284 ~iv~~L~~lp~  294 (295)
                      +++++|....+
T Consensus       165 ~~v~~Ll~~ga  175 (236)
T 1ikn_D          165 DLVSLLLKCGA  175 (236)
T ss_dssp             HHHHHHHTTTC
T ss_pred             HHHHHHHHcCC
Confidence            99999987653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=6.4e-27  Score=217.39  Aligned_cols=155  Identities=29%  Similarity=0.450  Sum_probs=128.8

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+++.|+..+..+.++.|+..+++++..  +..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  323 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANGNLG--NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN  323 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCc
Confidence            45677788888888888888877776654  7778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      .+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+    .+++++|+.+
T Consensus       324 ~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~----~~~~~~l~~~  399 (437)
T 1n11_A          324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY----ISVTDVLKVV  399 (437)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC----HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc----HHHHHHHHhc
Confidence            888888888888888888888888888888888888888888888888888888888888888887    7888888655


Q ss_pred             C
Q 022566          293 P  293 (295)
Q Consensus       293 p  293 (295)
                      .
T Consensus       400 ~  400 (437)
T 1n11_A          400 T  400 (437)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=1.6e-26  Score=207.35  Aligned_cols=156  Identities=24%  Similarity=0.282  Sum_probs=108.4

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC---------------
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD---------------  197 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d---------------  197 (295)
                      ..+|+.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|+++|++++..+               
T Consensus        92 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~  169 (351)
T 3utm_A           92 LVPLHNACSYGHYEVTELLLKHGACVNA--MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL  169 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHH
T ss_pred             CcHHHHHHHCCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhh
Confidence            3445555555555555555555555443  24455555555555555555555555555544332               


Q ss_pred             ---------------------------------------CCCChHHHHHHHh---CCHHHHHHHHhCCCCCcccCCCCCh
Q 022566          198 ---------------------------------------KDGATPLHYAVQV---GAMQSVKLLIKYNVDVNVADNEGWT  235 (295)
Q Consensus       198 ---------------------------------------~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~in~~d~~g~T  235 (295)
                                                             ..|.||||+|+..   +..+++++|++.|++++.++..|+|
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  249 (351)
T 3utm_A          170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT  249 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             HHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCC
Confidence                                                   2344555555555   3355666666667777778889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          236 PLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       236 pLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+..+
T Consensus       250 ~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~ga  304 (351)
T 3utm_A          250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH----LQTCRLLLSYGS  304 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999997    899999987654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=4e-27  Score=203.54  Aligned_cols=155  Identities=20%  Similarity=0.156  Sum_probs=136.7

Q ss_pred             HHHHHHHHhcChHHH----HHHHhcCCCCCcc--cCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCcc--------
Q 022566          134 EDLLKEVEQLLEPEE----REILNQNATPNLG--KISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDIDSV--------  196 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~----~~lL~~g~~~~~~--~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~d~~~~--------  196 (295)
                      .+|+.|+..++.+.+    +.++..|.+++..  ..+..|+||||+|+..   |+.+++++|++.|++++..        
T Consensus         4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   83 (256)
T 2etb_A            4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC   83 (256)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence            578999999999744    5555678887751  1488999999999999   9999999999998877643        


Q ss_pred             ---CCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCC-------------CChHHHHHHHcCCHHHHHHHHH---cCC
Q 022566          197 ---DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-------------GWTPLHIAIQSRNRDIAKVLLI---NGA  257 (295)
Q Consensus       197 ---d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~-------------g~TpLh~A~~~g~~~iv~~Ll~---~ga  257 (295)
                         |..|.||||+|+..|+.+++++|+++|++++.++..             |+||||+|+..|+.+++++|++   +|+
T Consensus        84 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga  163 (256)
T 2etb_A           84 TDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA  163 (256)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence               367999999999999999999999999999999886             9999999999999999999999   999


Q ss_pred             CCCCCCCCCCCHHHHHHh--cCCCCChHH-------HHHHhhhc
Q 022566          258 DKSRKTKDGKTALDMSLC--YGRDFKSYD-------LAKLLKIL  292 (295)
Q Consensus       258 d~~~~d~~g~TpL~~A~~--~g~~~~~~~-------iv~~L~~l  292 (295)
                      +++.+|..|+||||+|+.  .++    .+       ++++|.+.
T Consensus       164 ~~n~~d~~g~TpLh~A~~~~~~~----~~~~~~~~~iv~~Ll~~  203 (256)
T 2etb_A          164 SLEATDSLGNTVLHALVMIADNS----PENSALVIHMYDGLLQM  203 (256)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSC----HHHHHHHHHHHHHHHHH
T ss_pred             CcCccCCCCCCHHHHHHHcccCC----chhhHHHHHHHHHHHHc
Confidence            999999999999999999  554    66       89988653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.95  E-value=3.6e-26  Score=198.96  Aligned_cols=155  Identities=26%  Similarity=0.305  Sum_probs=146.3

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ...++.|+..++.+.++.|++.|++++.. .+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence            46789999999999999999999888754 37789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCCHHHHHHhcCCCCCh
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK----------TKDGKTALDMSLCYGRDFKS  282 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~----------d~~g~TpL~~A~~~g~~~~~  282 (295)
                      .+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+    
T Consensus        85 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~----  160 (285)
T 1wdy_A           85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH----  160 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC----
T ss_pred             HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCC----
Confidence            99999999999999999999999999999999999999999999999988          7889999999999997    


Q ss_pred             HHHHHHhhhc
Q 022566          283 YDLAKLLKIL  292 (295)
Q Consensus       283 ~~iv~~L~~l  292 (295)
                      .+++++|...
T Consensus       161 ~~~v~~Ll~~  170 (285)
T 1wdy_A          161 VEVLKILLDE  170 (285)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            8999999764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=2.7e-27  Score=215.00  Aligned_cols=159  Identities=17%  Similarity=0.126  Sum_probs=146.4

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhc----CCCCCc---------------ccCCCCCChHHHHHHHcC--CHHHHHHHHhC
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQ----NATPNL---------------GKISTAKWRPLQTLTLSM--QIRYMDMLLDG  189 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~----g~~~~~---------------~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~  189 (295)
                      ....+|+.|+..+..+.++.|+..    +.+++.               ...+..|+||||+|+..|  +.+++++|+++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            345689999999999999999988    665543               114778999999999999  99999999999


Q ss_pred             CCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCC-----CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 022566          190 GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD-----VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK  264 (295)
Q Consensus       190 g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-----in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~  264 (295)
                      |++++..|..|.||||+|+..|+.+++++|+++|++     ++..|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~  242 (364)
T 3ljn_A          163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN  242 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999999998     999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          265 DGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       265 ~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      .|.||||+|+..|+    .+++++|.+..
T Consensus       243 ~g~tpL~~A~~~g~----~~~v~~Ll~~~  267 (364)
T 3ljn_A          243 EHTVPLYLSVRAAM----VLLTKELLQKT  267 (364)
T ss_dssp             TSCCHHHHHHHTCC----HHHHHHHHHHS
T ss_pred             CCCCHHHHHHHhCh----HHHHHHHHHcC
Confidence            99999999999997    99999997653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.95  E-value=3.6e-26  Score=194.96  Aligned_cols=157  Identities=20%  Similarity=0.296  Sum_probs=145.8

Q ss_pred             hcHHHHHHHHhcChHHHHHHHh----cCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHH
Q 022566          132 YEEDLLKEVEQLLEPEEREILN----QNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYA  207 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~----~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A  207 (295)
                      -..+|+.|+..++.+.++.|++    .+.+++.  .+..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A   86 (241)
T 1k1a_A            9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   86 (241)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            3567999999999999999997    5666655  488899999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhCCC----CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCCh
Q 022566          208 VQVGAMQSVKLLIKYNV----DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKS  282 (295)
Q Consensus       208 ~~~g~~~~v~~Ll~~ga----~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~~  282 (295)
                      +..|+.+++++|++.|+    +++..+..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+    
T Consensus        87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~----  162 (241)
T 1k1a_A           87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS----  162 (241)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC----
T ss_pred             HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC----
Confidence            99999999999999987    889999999999999999999999999999999999999 889999999999997    


Q ss_pred             HHHHHHhhhcCC
Q 022566          283 YDLAKLLKILPV  294 (295)
Q Consensus       283 ~~iv~~L~~lp~  294 (295)
                      .+++++|.+...
T Consensus       163 ~~~v~~Ll~~g~  174 (241)
T 1k1a_A          163 LSMVQLLLQHGA  174 (241)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999987543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=8.2e-27  Score=211.81  Aligned_cols=156  Identities=18%  Similarity=0.214  Sum_probs=123.1

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCc----------------
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDS----------------  195 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~----------------  195 (295)
                      -..+|+.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|++.|++++.                
T Consensus        20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~   97 (364)
T 3ljn_A           20 NMEKIHVAARKGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKT   97 (364)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccc--cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence            34567777777777777777777766654  366677777777777777777777777665544                


Q ss_pred             ------------------------------------cCCCCChHHHHHHHhC--CHHHHHHHHhCCCCCcccCCCCChHH
Q 022566          196 ------------------------------------VDKDGATPLHYAVQVG--AMQSVKLLIKYNVDVNVADNEGWTPL  237 (295)
Q Consensus       196 ------------------------------------~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~in~~d~~g~TpL  237 (295)
                                                          .+..|.||||+|+..|  +.+++++|+++|++++.+|..|+|||
T Consensus        98 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L  177 (364)
T 3ljn_A           98 DLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL  177 (364)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHH
Confidence                                                5667888888888888  88888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          238 HIAIQSRNRDIAKVLLINGAD-----KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       238 h~A~~~g~~~iv~~Ll~~gad-----~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      |+|+..|+.+++++|+++|++     ++.+|..|.||||+|+..|+    .+++++|.+..
T Consensus       178 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g  234 (364)
T 3ljn_A          178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW----EDVAMRFVEMG  234 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC----HHHHHHHHTTT
T ss_pred             HHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC----HHHHHHHHHcC
Confidence            888888888888888888888     88888888888888888887    88888887654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=201.15  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=114.6

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+|+.|+..+..+.++.|+..|++++.  .+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus        61 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~  138 (285)
T 3d9h_A           61 SPMHEAAIHGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW  138 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCE--ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHH
Confidence            457777777777777777777766654  366777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      +++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+..
T Consensus       139 ~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~g  213 (285)
T 3d9h_A          139 DCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ----RACVKKLLESG  213 (285)
T ss_dssp             HHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHCC
Confidence            77777777777776433 47777777777777777777777777777777777777777777776    77777776543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=7.5e-27  Score=193.35  Aligned_cols=129  Identities=25%  Similarity=0.303  Sum_probs=124.0

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHH
Q 022566          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI  241 (295)
Q Consensus       162 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~  241 (295)
                      .+|..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            35888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          242 QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       242 ~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+...
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga  158 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR----SEIVKKLLELGA  158 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC----HHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCC
Confidence            9999999999999999999999999999999999997    899999987643

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=3.3e-26  Score=212.59  Aligned_cols=157  Identities=28%  Similarity=0.304  Sum_probs=145.2

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...+++.|+..+..+.++.|+..|++++..  +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus       212 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  289 (437)
T 1n11_A          212 GYTPLHIAAKQNQVEVARSLLQYGGSANAE--SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG  289 (437)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence            346788899999999999999998887654  778999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+
T Consensus       290 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~----~~iv~~Ll~  365 (437)
T 1n11_A          290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH----TDIVTLLLK  365 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             CHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCCh----HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999997    899999987


Q ss_pred             cCC
Q 022566          292 LPV  294 (295)
Q Consensus       292 lp~  294 (295)
                      ..+
T Consensus       366 ~ga  368 (437)
T 1n11_A          366 NGA  368 (437)
T ss_dssp             TTC
T ss_pred             CcC
Confidence            643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=8.2e-26  Score=196.72  Aligned_cols=159  Identities=22%  Similarity=0.244  Sum_probs=148.6

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccC--------CCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCCh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKI--------STAKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGAT  202 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~--------d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~t  202 (295)
                      ...+++.|+..+..+.++.|+..|++++....        +..|.||||+|+..|+.+++++|++. |++++..+..|.|
T Consensus       105 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t  184 (285)
T 1wdy_A          105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN  184 (285)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred             cCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            35679999999999999999999998876422        67799999999999999999999997 9999999999999


Q ss_pred             HHHHHHHhCC----HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHhcC
Q 022566          203 PLHYAVQVGA----MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYG  277 (295)
Q Consensus       203 pLh~A~~~g~----~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~TpL~~A~~~g  277 (295)
                      |||+|+..++    .+++++|+++|++++.++..|+||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+..|
T Consensus       185 ~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            9999999999    999999999999999999999999999999999999999999 89999999999999999999999


Q ss_pred             CCCChHHHHHHhhhcCC
Q 022566          278 RDFKSYDLAKLLKILPV  294 (295)
Q Consensus       278 ~~~~~~~iv~~L~~lp~  294 (295)
                      +    .+++++|.+..+
T Consensus       265 ~----~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          265 L----KKIAELLCKRGA  277 (285)
T ss_dssp             C----HHHHHHHHHHSS
T ss_pred             c----HHHHHHHHHcCC
Confidence            7    999999987654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=4.6e-27  Score=200.98  Aligned_cols=141  Identities=26%  Similarity=0.347  Sum_probs=116.5

Q ss_pred             HHHHHhcCCCCCcc-cCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCC
Q 022566          148 EREILNQNATPNLG-KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDV  226 (295)
Q Consensus       148 ~~~lL~~g~~~~~~-~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~i  226 (295)
                      ++.||..+++++.. ..+..+.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            35677788877643 44667888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHH--HhcCCCCChHHHHHHhhhc
Q 022566          227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALDMS--LCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       227 n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~TpL~~A--~~~g~~~~~~~iv~~L~~l  292 (295)
                      +.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|  +..|+    .+++++|.+.
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~----~~~v~~Ll~~  145 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGY----ADCATYLADV  145 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTH----HHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcCh----HHHHHHHHHc
Confidence            9999999999999999999999999999999999886 5899999999  77775    8999988653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=2.6e-26  Score=176.76  Aligned_cols=119  Identities=26%  Similarity=0.358  Sum_probs=110.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHc
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  243 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~  243 (295)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            55688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      |+.+++++|+++|++++.+|..|.||||+|..       .++.++|
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~-------~~~~~ll  122 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDN-------QAIKALL  122 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC-------HHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC-------HHHHHHh
Confidence            99999999999999999999999999999943       4555555

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=9e-26  Score=202.41  Aligned_cols=155  Identities=22%  Similarity=0.237  Sum_probs=95.2

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+|+.|+..+..+.++.|++.|++++..  +..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus        59 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  136 (351)
T 3utm_A           59 STPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR  136 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            34555555566666666666555554432  5555566666666666666666666666666555556666666666666


Q ss_pred             HHHHHHHHhCCCCCcccC------------------------------------------------------CCCChHHH
Q 022566          213 MQSVKLLIKYNVDVNVAD------------------------------------------------------NEGWTPLH  238 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d------------------------------------------------------~~g~TpLh  238 (295)
                      .+++++|+++|++++..+                                                      ..|.||||
T Consensus       137 ~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~  216 (351)
T 3utm_A          137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH  216 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH
T ss_pred             HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH
Confidence            666666666655554332                                                      33445555


Q ss_pred             HHHHc---CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          239 IAIQS---RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       239 ~A~~~---g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      +|+..   +..+++++|+++|++++.++..|.||||+|+..|+    .+++++|.+.+
T Consensus       217 ~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g  270 (351)
T 3utm_A          217 CAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH----NDVMEVLHKHG  270 (351)
T ss_dssp             HHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             HHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCC----HHHHHHHHHCC
Confidence            55555   33556666666666777777788888888888886    78888876654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.94  E-value=6.1e-26  Score=192.86  Aligned_cols=156  Identities=23%  Similarity=0.285  Sum_probs=144.4

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+++.|+..+..+.++.|++.|++++..  +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLI--DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC
Confidence            46789999999999999999999888764  7889999999999999999999999999999999999999999997776


Q ss_pred             -HHHHHHHHhCCCCCcccCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          213 -MQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       213 -~~~v~~Ll~~ga~in~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                       ..++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+    .+++++|.
T Consensus       155 ~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~v~~L~  230 (240)
T 3eu9_A          155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN----VWMINHLQ  230 (240)
T ss_dssp             SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTC----HHHHHHHH
T ss_pred             hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHH
Confidence             8899999999999999987 89999999999999999999999999999999999999999999997    99999998


Q ss_pred             hcCC
Q 022566          291 ILPV  294 (295)
Q Consensus       291 ~lp~  294 (295)
                      +...
T Consensus       231 ~~~~  234 (240)
T 3eu9_A          231 EARQ  234 (240)
T ss_dssp             HHC-
T ss_pred             Hhhh
Confidence            7653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=3.4e-26  Score=185.03  Aligned_cols=125  Identities=22%  Similarity=0.275  Sum_probs=120.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC
Q 022566          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN  245 (295)
Q Consensus       166 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  245 (295)
                      .|.||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       246 ~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      .+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+.+.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~  126 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH----VKCVKMLLESGA  126 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            999999999999999999999999999999997    999999987543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=1.2e-26  Score=200.85  Aligned_cols=160  Identities=21%  Similarity=0.180  Sum_probs=137.7

Q ss_pred             cHHHHHHHHhcChHHHHHHHh----cCCCCCccc--CCCCCChHHHHHH---HcCCHHHHHHHHhCCCC-----------
Q 022566          133 EEDLLKEVEQLLEPEEREILN----QNATPNLGK--ISTAKWRPLQTLT---LSMQIRYMDMLLDGGLD-----------  192 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~----~g~~~~~~~--~d~~g~t~Lh~A~---~~g~~~~v~~Ll~~g~d-----------  192 (295)
                      ...++.|+..++.+.++.++.    .+.+++...  .+..|+||||+|+   ..|+.+++++|++.|++           
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~   85 (260)
T 3jxi_A            6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP   85 (260)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence            357999999999997766666    888887653  2477999999999   67999999999998744           


Q ss_pred             CCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccC--------------CCCChHHHHHHHcCCHHHHHHHHH---c
Q 022566          193 IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD--------------NEGWTPLHIAIQSRNRDIAKVLLI---N  255 (295)
Q Consensus       193 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d--------------~~g~TpLh~A~~~g~~~iv~~Ll~---~  255 (295)
                      ++..|..|+||||+|+..|+.+++++|+++|++++.++              ..|+||||+|+..|+.+++++|++   +
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  165 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK  165 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            44455689999999999999999999999999999998              689999999999999999999999   9


Q ss_pred             CCCCCCCCCCCCCHHHHHHhcCCCCC-----hHHHHHHhhhc
Q 022566          256 GADKSRKTKDGKTALDMSLCYGRDFK-----SYDLAKLLKIL  292 (295)
Q Consensus       256 gad~~~~d~~g~TpL~~A~~~g~~~~-----~~~iv~~L~~l  292 (295)
                      |++++.+|..|.||||+|+..|+...     ..+++++|.+.
T Consensus       166 ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~  207 (260)
T 3jxi_A          166 QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK  207 (260)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh
Confidence            99999999999999999998876211     15788887643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=9.4e-27  Score=205.20  Aligned_cols=155  Identities=12%  Similarity=0.029  Sum_probs=133.5

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCC-ChHHHHHHHhC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDG-ATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g-~tpLh~A~~~g  211 (295)
                      ..+|+.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|
T Consensus        63 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~  140 (285)
T 3kea_A           63 EFPLHQAATLEDTKIVKILLFSGLDDSQ--FDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN  140 (285)
T ss_dssp             CCHHHHHTTSSSCHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Confidence            5678888888889999999988888776  47788899999999999999999999999999888888 79999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHhcCCCCChHHHHHHhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA-LDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~Tp-L~~A~~~g~~~~~~~iv~~L~  290 (295)
                      +.+++++|+++|+++... ..|+||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..|+    .+++++|.
T Consensus       141 ~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~----~~~v~~Ll  215 (285)
T 3kea_A          141 DVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD----IEMLQALF  215 (285)
T ss_dssp             CHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC----HHHHHHHT
T ss_pred             CHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC----HHHHHHHH
Confidence            999999999988876322 278899999999999999999999999999999999997 999999987    89999987


Q ss_pred             hcCC
Q 022566          291 ILPV  294 (295)
Q Consensus       291 ~lp~  294 (295)
                      +..+
T Consensus       216 ~~ga  219 (285)
T 3kea_A          216 KYDI  219 (285)
T ss_dssp             TSCB
T ss_pred             HcCC
Confidence            6543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=1.5e-26  Score=203.91  Aligned_cols=152  Identities=24%  Similarity=0.211  Sum_probs=140.5

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...+|+.|+..+..+.++.|+..|++++..    +|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|
T Consensus        31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g  106 (285)
T 3kea_A           31 GHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG  106 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcC
Confidence            345799999999999999999999888754    4899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEG-WTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g-~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      +.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++... ..|.||||+|+..|+    .+++++|.
T Consensus       107 ~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~----~~~v~~Ll  181 (285)
T 3kea_A          107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGH----VDMMILLL  181 (285)
T ss_dssp             CHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTC----HHHHHHHH
T ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcCh----HHHHHHHH
Confidence            9999999999999999999999 79999999999999999999999987333 289999999999997    99999996


Q ss_pred             hc
Q 022566          291 IL  292 (295)
Q Consensus       291 ~l  292 (295)
                      +.
T Consensus       182 ~~  183 (285)
T 3kea_A          182 DY  183 (285)
T ss_dssp             HH
T ss_pred             Hc
Confidence            53

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=5.5e-27  Score=204.69  Aligned_cols=161  Identities=24%  Similarity=0.197  Sum_probs=137.5

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhc----CCCCCcc--cCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCC-------C
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQ----NATPNLG--KISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDI-------D  194 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~----g~~~~~~--~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~d~-------~  194 (295)
                      ....+|+.|+..++.+.++.|++.    +.+.+-.  ..+..|+||||+|+..   |+.+++++|++.|+++       +
T Consensus        12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~   91 (273)
T 2pnn_A           12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN   91 (273)
T ss_dssp             CCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence            345789999999999999988874    4333211  3478999999999987   9999999999988653       2


Q ss_pred             c----cCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCC--------------CCChHHHHHHHcCCHHHHHHHHH--
Q 022566          195 S----VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN--------------EGWTPLHIAIQSRNRDIAKVLLI--  254 (295)
Q Consensus       195 ~----~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~--------------~g~TpLh~A~~~g~~~iv~~Ll~--  254 (295)
                      .    .|..|.||||+|+..|+.+++++|+++|++++.++.              .|+||||+|+..|+.+++++|++  
T Consensus        92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            2    567899999999999999999999999999999987              79999999999999999999999  


Q ss_pred             -cCCCCCCCCCCCCCHHHHHHhcCCCCC-----hHHHHHHhhh
Q 022566          255 -NGADKSRKTKDGKTALDMSLCYGRDFK-----SYDLAKLLKI  291 (295)
Q Consensus       255 -~gad~~~~d~~g~TpL~~A~~~g~~~~-----~~~iv~~L~~  291 (295)
                       +|++++.+|..|+||||+|+..|+...     ..+++++|..
T Consensus       172 ~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~  214 (273)
T 2pnn_A          172 WQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI  214 (273)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH
Confidence             999999999999999999999886211     1578888764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=7.5e-26  Score=183.75  Aligned_cols=127  Identities=29%  Similarity=0.443  Sum_probs=120.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHc
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  243 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~  243 (295)
                      ...+.++||.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            45677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+...
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~  137 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH----LEIVEVLLKNGA  137 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            99999999999999999999999999999999997    999999987643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=5.2e-26  Score=200.45  Aligned_cols=144  Identities=26%  Similarity=0.353  Sum_probs=133.3

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCC-------------
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK-------------  198 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~-------------  198 (295)
                      ...+|+.|+..+..+.++.|++.|++++..  +..|+||||+|+..|+.+++++|+++|++++..+.             
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  150 (299)
T 1s70_B           73 GLTALHQACIDDNVDMVKFLVENGANINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA  150 (299)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc
Confidence            346799999999999999999999888764  88899999999999999999999999999876653             


Q ss_pred             -----------------------------------------------CCChHHHHHHHhCCHHHHHHHHhCCCCCcccCC
Q 022566          199 -----------------------------------------------DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN  231 (295)
Q Consensus       199 -----------------------------------------------~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~  231 (295)
                                                                     .|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~  230 (299)
T 1s70_B          151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (299)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence                                                           477889999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcC
Q 022566          232 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG  277 (295)
Q Consensus       232 ~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g  277 (295)
                      .|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+...
T Consensus       231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG
T ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=1.1e-26  Score=186.29  Aligned_cols=128  Identities=22%  Similarity=0.267  Sum_probs=119.9

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCCh-HHHHH
Q 022566          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWT-PLHIA  240 (295)
Q Consensus       162 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~T-pLh~A  240 (295)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            34677899999999999999999999999999999999999999996 99999999999999999999999999 99999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          241 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       241 ~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+..+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~----~~~v~~Ll~~ga  135 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH----RDVARYLRAAAG  135 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC----HHHHHHHSSCC-
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCH----HHHHHHHHHcCC
Confidence            99999999999999999999999999999999999997    899999977643

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.94  E-value=4.5e-26  Score=208.30  Aligned_cols=160  Identities=20%  Similarity=0.273  Sum_probs=114.5

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCCcc----------------------------------cCCCCCChHHHHHHH
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLG----------------------------------KISTAKWRPLQTLTL  176 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~----------------------------------~~d~~g~t~Lh~A~~  176 (295)
                      ....+|+.|+..+..+.++.|+..|++++..                                  ..+..|+||||+|+.
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~  244 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH  244 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHH
Confidence            3455677777777777888887777766542                                  124445555555555


Q ss_pred             cC---CHHHHHHHHhCCCCCCc--------cCCCCChHHHHHHHhCCHHHHHHHHhCC-CCCcccCCCCChHHHHHHHcC
Q 022566          177 SM---QIRYMDMLLDGGLDIDS--------VDKDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSR  244 (295)
Q Consensus       177 ~g---~~~~v~~Ll~~g~d~~~--------~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~in~~d~~g~TpLh~A~~~g  244 (295)
                      .+   +.+++++|+++|++++.        .+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|
T Consensus       245 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g  324 (373)
T 2fo1_E          245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG  324 (373)
T ss_dssp             SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred             hCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence            55   55666666666666654        4556777777777777778888888664 778888888888888888888


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          245 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       245 ~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      +.+++++|+++|++++.+|..|.|||++|+.+|+    .+|+++|.+..+
T Consensus       325 ~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~----~~iv~~Ll~~~a  370 (373)
T 2fo1_E          325 RIEVVMYLIQQGASVEAVDATDHTARQLAQANNH----HNIVDIFDRCRP  370 (373)
T ss_dssp             CHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC----HHHHHHHHTTC-
T ss_pred             CHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC----HHHHHHHHhcCc
Confidence            8888888888888888888888888888888886    788888876544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=6.7e-28  Score=206.19  Aligned_cols=156  Identities=16%  Similarity=0.150  Sum_probs=138.5

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ....|+.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|
T Consensus        21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g   98 (229)
T 2vge_A           21 PLVLLLDAALTGELEVVQQAVKEMNDPSQ--PNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN   98 (229)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            34578999999999999999999998876  4889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccC-CCCChHHHHH--HHcCCHHHHHHHHHcCCCC-----------------------------
Q 022566          212 AMQSVKLLIKYNVDVNVAD-NEGWTPLHIA--IQSRNRDIAKVLLINGADK-----------------------------  259 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A--~~~g~~~iv~~Ll~~gad~-----------------------------  259 (295)
                      +.+++++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++|+++                             
T Consensus        99 ~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~  178 (229)
T 2vge_A           99 DTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGES  178 (229)
T ss_dssp             CHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCE
T ss_pred             CHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCcccccc
Confidence            9999999999999999987 6999999999  9999999999999876554                             


Q ss_pred             ---CCCCCCCCCHHHHHHhcCCCCChHHHHH--HhhhcC
Q 022566          260 ---SRKTKDGKTALDMSLCYGRDFKSYDLAK--LLKILP  293 (295)
Q Consensus       260 ---~~~d~~g~TpL~~A~~~g~~~~~~~iv~--~L~~lp  293 (295)
                         +.+|..|.||||+|+..|+    .++++  +|..+|
T Consensus       179 ~~~~~~d~~G~TpL~~A~~~g~----~~~v~~~~l~~~p  213 (229)
T 2vge_A          179 VTVLRRDGPEETDWWWAALHGQ----EGYVPRNYFGLFP  213 (229)
T ss_dssp             EEEEESSCTTCSSEEEEEETTE----EEEEEGGGEESSC
T ss_pred             ccccccCCCcccHHHHHHHcCC----cceeehhhhhhCC
Confidence               3456778899999999887    56665  344444

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=9.7e-27  Score=204.26  Aligned_cols=151  Identities=21%  Similarity=0.225  Sum_probs=137.3

Q ss_pred             HHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCChHHHHHH-----Hh
Q 022566          137 LKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL-DIDSVDKDGATPLHYAV-----QV  210 (295)
Q Consensus       137 ~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~-d~~~~d~~g~tpLh~A~-----~~  210 (295)
                      +.++..+....++.++..+.+..++..|..|+||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+     ..
T Consensus        81 ~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~  160 (276)
T 4hbd_A           81 HPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ  160 (276)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh
Confidence            4556666677777777666554445568999999999999999999999999998 99999999999999999     67


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      ++.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.
T Consensus       161 ~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~----~~iv~~Ll  236 (276)
T 4hbd_A          161 DDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH----KEIAGLLL  236 (276)
T ss_dssp             HHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC----HHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999997    99999998


Q ss_pred             h
Q 022566          291 I  291 (295)
Q Consensus       291 ~  291 (295)
                      .
T Consensus       237 ~  237 (276)
T 4hbd_A          237 A  237 (276)
T ss_dssp             T
T ss_pred             h
Confidence            7

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=3.3e-25  Score=188.31  Aligned_cols=154  Identities=23%  Similarity=0.193  Sum_probs=87.6

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+++.|+..+..+.++.|++.+.+++.. .+..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus        44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  122 (240)
T 3eu9_A           44 TLLHWAAINNRIDLVKYYISKGAIVDQL-GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT  122 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCC-BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CHHHHHHHhCCHHHHHHHHHcCCcchhh-cCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHH
Confidence            3455555555555555555555544422 233355555555555555555555555555555555555666666655555


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCC-HHHHHHHHHcCCCCCCCCC-CCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN-RDIAKVLLINGADKSRKTK-DGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~-~~iv~~Ll~~gad~~~~d~-~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +++++|+++|++++.++..|.||||+|+..++ .+++++|+++|++++..+. .|.||||+|+..|+    .+++++|.+
T Consensus       123 ~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~  198 (240)
T 3eu9_A          123 SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN----TTVISLLLE  198 (240)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTC----HHHHHHHHH
T ss_pred             HHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCC----HHHHHHHHH
Confidence            66666655555555555555566666554444 5555555555666555554 55666666666654    566666654


Q ss_pred             c
Q 022566          292 L  292 (295)
Q Consensus       292 l  292 (295)
                      .
T Consensus       199 ~  199 (240)
T 3eu9_A          199 A  199 (240)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=1.4e-25  Score=204.97  Aligned_cols=139  Identities=23%  Similarity=0.279  Sum_probs=102.7

Q ss_pred             HHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCC--
Q 022566          146 PEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN--  223 (295)
Q Consensus       146 ~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g--  223 (295)
                      ..++.++..|++++..  |..|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|  
T Consensus       147 ~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~  224 (373)
T 2fo1_E          147 HEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKL  224 (373)
T ss_dssp             HHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH
T ss_pred             HHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCcc
Confidence            3456788899988764  889999999999999999999999999999999888888888888888888888777776  


Q ss_pred             -CCCcccCCCCChHHHHHHHcC---CHHHHHHHHHcCCCCCC--------CCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          224 -VDVNVADNEGWTPLHIAIQSR---NRDIAKVLLINGADKSR--------KTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       224 -a~in~~d~~g~TpLh~A~~~g---~~~iv~~Ll~~gad~~~--------~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                       ++++..+..|+||||+|+..+   +.+++++|+++|++++.        .+..|.||||+|+..|+    .+++++|.
T Consensus       225 ~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll  299 (373)
T 2fo1_E          225 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN----MPIVKYLV  299 (373)
T ss_dssp             HHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC----HHHHHHHH
T ss_pred             ccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCC----HHHHHHHH
Confidence             566666666666666666655   55556666655555554        34455555555555554    55555554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=1e-25  Score=181.10  Aligned_cols=123  Identities=17%  Similarity=0.223  Sum_probs=117.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC
Q 022566          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN  245 (295)
Q Consensus       166 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  245 (295)
                      ...||||.|+..|+.+++++|++.|++++..+..|+||||+|+. |+.+++++|+++|++++.++..|+||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            35689999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       246 ~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      .+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+.+
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g  126 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH----LRVVEFLVKHT  126 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHcc
Confidence            999999999999999999999999999999997    99999997654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=3.4e-25  Score=176.85  Aligned_cols=122  Identities=26%  Similarity=0.318  Sum_probs=116.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHH
Q 022566          168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD  247 (295)
Q Consensus       168 ~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~  247 (295)
                      .++||.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            489999999999999999999999887 5888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          248 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       248 iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      ++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+...
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga  124 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNH----QEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            9999999999999999999999999999997    899999987653

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=3.1e-26  Score=194.05  Aligned_cols=125  Identities=26%  Similarity=0.327  Sum_probs=115.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHH
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~  242 (295)
                      +..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       243 ~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      .|+.+++++|+++|++++.+|..|.|||++|+..|+    .++++.|...
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~l~~l~~~  195 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC----ASLLKKKQGT  195 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHH----HHHHC-----
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhH----HHHHHHHhcc
Confidence            999999999999999999999999999999999885    8888877654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=4.1e-25  Score=180.92  Aligned_cols=126  Identities=26%  Similarity=0.331  Sum_probs=117.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHc
Q 022566          165 TAKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  243 (295)
Q Consensus       165 ~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~  243 (295)
                      ..+.++||.|+..|+.+++++|++. +.+++..+..|+||||+|+..|+.+++++|++.|++++.++..|+||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4577899999999999999999997 778999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.....
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~ga  129 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ----DQVAEDLVANGA  129 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHHHCCC
Confidence            99999999999999999999999999999999997    899999987653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.93  E-value=1.1e-24  Score=195.67  Aligned_cols=155  Identities=26%  Similarity=0.305  Sum_probs=144.0

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      -...|+.|+..++.+.++.||+.|+++|.. .+..|+||||+|+..|+.++|++|+++|++++.++..+.++++.++..+
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            456799999999999999999999999865 2456999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCCHHHHHHhcCCCCC
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK----------TKDGKTALDMSLCYGRDFK  281 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~----------d~~g~TpL~~A~~~g~~~~  281 (295)
                      ...++..++..+++++..|..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+   
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---  180 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH---  180 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC---
Confidence            999999999999999999999999999999999999999999999998764          4468999999999997   


Q ss_pred             hHHHHHHhhh
Q 022566          282 SYDLAKLLKI  291 (295)
Q Consensus       282 ~~~iv~~L~~  291 (295)
                       .+++++|..
T Consensus       181 -~~~v~~LL~  189 (337)
T 4g8k_A          181 -VEVLKILLD  189 (337)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHh
Confidence             999999863

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=3.7e-26  Score=205.35  Aligned_cols=153  Identities=20%  Similarity=0.155  Sum_probs=128.5

Q ss_pred             HHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC---H
Q 022566          137 LKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA---M  213 (295)
Q Consensus       137 ~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~---~  213 (295)
                      +.++.......++.++..|++++.. .+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+   .
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccH
Confidence            3455566667777777788887762 48889999999999999999999999999999999999999999999988   6


Q ss_pred             HHHHHHHhCC-CCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCC-------------------------------
Q 022566          214 QSVKLLIKYN-VDVNVADNEGWTPLHIAIQ----SRNRDIAKVLLINGA-------------------------------  257 (295)
Q Consensus       214 ~~v~~Ll~~g-a~in~~d~~g~TpLh~A~~----~g~~~iv~~Ll~~ga-------------------------------  257 (295)
                      ++++.|++.+ ++++.+|..|+||||+|+.    .|+.+++++|++.++                               
T Consensus       181 ~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t  260 (327)
T 1sw6_A          181 GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD  260 (327)
T ss_dssp             TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------C
T ss_pred             HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCC
Confidence            7778888875 7799999999999999998    899999999987743                               


Q ss_pred             --------------CCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          258 --------------DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       258 --------------d~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                                    +++.+|..|+||||+|+.+|+    .+++++|.+..+
T Consensus       261 ~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~----~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN----ISIVDALLDYGA  307 (327)
T ss_dssp             HHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCC----HHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence                          578888899999999999997    899999987654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.93  E-value=1e-24  Score=195.92  Aligned_cols=156  Identities=22%  Similarity=0.270  Sum_probs=105.9

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCccc--------CCCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCccCCCCChHH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGK--------ISTAKWRPLQTLTLSMQIRYMDMLLD-GGLDIDSVDKDGATPL  204 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~--------~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL  204 (295)
                      .+++.|+..+..+.++.++..|++++...        .+..|.||||+|+..|+.++|++|++ .|++++.++..|.|+|
T Consensus       127 t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l  206 (337)
T 4g8k_A          127 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  206 (337)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHH
Confidence            45677777777777777777777665432        24456777777777777777777774 5777777777777777


Q ss_pred             HHHHHhCC----HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHhcCCC
Q 022566          205 HYAVQVGA----MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRD  279 (295)
Q Consensus       205 h~A~~~g~----~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~TpL~~A~~~g~~  279 (295)
                      |+++..+.    ..++++|+++|+++|.+|..|+||||+|+..|+.+++++|+.. |++++.+|..|+||||+|+.+|+ 
T Consensus       207 ~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-  285 (337)
T 4g8k_A          207 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-  285 (337)
T ss_dssp             HHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-
T ss_pred             HHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-
Confidence            66665443    3466677777777777777777777777777777777776654 66777777777777777777775 


Q ss_pred             CChHHHHHHhhhcC
Q 022566          280 FKSYDLAKLLKILP  293 (295)
Q Consensus       280 ~~~~~iv~~L~~lp  293 (295)
                         .+|+++|.+..
T Consensus       286 ---~~iv~~Ll~~G  296 (337)
T 4g8k_A          286 ---KKIAELLCKRG  296 (337)
T ss_dssp             ---HHHHHHHHTTS
T ss_pred             ---HHHHHHHHHCC
Confidence               67777766543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=2.9e-25  Score=179.21  Aligned_cols=127  Identities=23%  Similarity=0.313  Sum_probs=119.6

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHh-CCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHH
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLD-GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~  242 (295)
                      +..+.|+||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            6678899999999999999999998 567788888899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       243 ~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+...
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga  132 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK----YEICKLLLQHGA  132 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            999999999999999999999999999999999997    999999987643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.6e-25  Score=184.45  Aligned_cols=127  Identities=24%  Similarity=0.325  Sum_probs=100.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccC-CCCChHHHHHHH
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQ  242 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~  242 (295)
                      +..|.||||+|+..|+.++++.|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3456788888888888888888888 88888888888888888888888888888888888888777 778888888888


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC------------hHHHHHHhhh
Q 022566          243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK------------SYDLAKLLKI  291 (295)
Q Consensus       243 ~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~------------~~~iv~~L~~  291 (295)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++...            ..+++++|.+
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHH
Confidence            888888888888888888888888888888876533211            3677777754

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=3.6e-25  Score=179.84  Aligned_cols=124  Identities=20%  Similarity=0.266  Sum_probs=117.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCC-CCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC
Q 022566          167 KWRPLQTLTLSMQIRYMDMLLDGGLD-IDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN  245 (295)
Q Consensus       167 g~t~Lh~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  245 (295)
                      +.+|||.|+..|+.++++.|++.+.+ ++..+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            46899999999999999999999887 88889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       246 ~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      .+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+...
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga  126 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH----VKCVEALLARGA  126 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            999999999999999999999999999999997    999999987643

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=5.2e-26  Score=204.35  Aligned_cols=146  Identities=20%  Similarity=0.094  Sum_probs=132.3

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCC---HHHHHHHHhCC-CCCCccCCCCChHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ---IRYMDMLLDGG-LDIDSVDKDGATPLH  205 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~g-~d~~~~d~~g~tpLh  205 (295)
                      .....+|+.|+..+..+.++.||+.|++++.  .+..|+||||+|+..|+   .++++.|++.+ ++++.++..|+||||
T Consensus       129 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~--~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  206 (327)
T 1sw6_A          129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLY--GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  206 (327)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB--CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHH
Confidence            4456789999999999999999999999885  48899999999999998   68888888876 789999999999999


Q ss_pred             HHHH----hCCHHHHHHHHhCCC---------------------------------------------CCcccCCCCChH
Q 022566          206 YAVQ----VGAMQSVKLLIKYNV---------------------------------------------DVNVADNEGWTP  236 (295)
Q Consensus       206 ~A~~----~g~~~~v~~Ll~~ga---------------------------------------------~in~~d~~g~Tp  236 (295)
                      +|+.    .|+.+++++|++.++                                             +++.+|..|+||
T Consensus       207 ~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~Tp  286 (327)
T 1sw6_A          207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  286 (327)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCH
Confidence            9999    899999999998743                                             578889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcC
Q 022566          237 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG  277 (295)
Q Consensus       237 Lh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g  277 (295)
                      ||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus       287 Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          287 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            99999999999999999999999999999999999998765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.9e-25  Score=198.74  Aligned_cols=141  Identities=18%  Similarity=0.173  Sum_probs=125.0

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCccc----CCCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCccCCCCChHH
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGK----ISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDIDSVDKDGATPL  204 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~----~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpL  204 (295)
                      ....|+.|+..++...++.++..|++++...    .+..|+||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            3467999999999999999999999887521    478899999999997   899999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Q 022566          205 HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  278 (295)
Q Consensus       205 h~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  278 (295)
                      |+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++      .|.||||+|+.+|+
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999987      58999999999987

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=3.9e-25  Score=190.63  Aligned_cols=121  Identities=26%  Similarity=0.372  Sum_probs=73.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccC-CCCChHHHHHHHcC
Q 022566          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSR  244 (295)
Q Consensus       166 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~~g  244 (295)
                      .|.||||+|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            34555666666666666655555 55555555555666666666666666666666665555555 45556666666666


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHH----------------hcCCCCChHHHHHHhhh
Q 022566          245 NRDIAKVLLINGADKSRKTKDGKTALDMSL----------------CYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       245 ~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~----------------~~g~~~~~~~iv~~L~~  291 (295)
                      +.+++++|+++|++++.+|..|.||||+|+                ..|+    .+++++|..
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~----~~iv~~L~~  181 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL----EKVINVLEG  181 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHH----HHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcCh----HHHHHHHHH
Confidence            666666666556665555555555555555                6664    788988865

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=3.3e-24  Score=167.93  Aligned_cols=125  Identities=30%  Similarity=0.411  Sum_probs=118.0

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  209 (295)
                      .....+++.|+..++.+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNA--KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            3456789999999999999999999988775  48889999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 022566          210 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING  256 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  256 (295)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999886

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.1e-24  Score=174.09  Aligned_cols=121  Identities=22%  Similarity=0.262  Sum_probs=115.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC
Q 022566          167 KWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN  245 (295)
Q Consensus       167 g~t~Lh~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  245 (295)
                      +.|+||.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            46899999999999999999998 45899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       246 ~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      .+++++|+++|++++.+|..|.||||+|+..|+    .+++++|...
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~  123 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH----TAVVSFLAAE  123 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC----HHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhCh----HHHHHHHHhc
Confidence            999999999999999999999999999999997    9999999754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=5.5e-25  Score=172.36  Aligned_cols=124  Identities=23%  Similarity=0.356  Sum_probs=118.1

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCC-CChHHHHHHHh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD-GATPLHYAVQV  210 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~-g~tpLh~A~~~  210 (295)
                      ...+|+.|+..+..+.++.|++.|++++.  .+..|+||||+|+. |+.+++++|+++|++++.++.. |.||||+|+..
T Consensus        12 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~   88 (136)
T 1d9s_A           12 SDAGLATAAARGQVETVRQLLEAGADPNA--LNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAARE   88 (136)
T ss_dssp             CSCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCcCC--cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHc
Confidence            34579999999999999999999988775  48899999999999 9999999999999999999999 99999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  258 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad  258 (295)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+|
T Consensus        89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=1.1e-24  Score=186.84  Aligned_cols=126  Identities=18%  Similarity=0.139  Sum_probs=87.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHc
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  243 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~  243 (295)
                      +..|.||||.|+..++.++++.|+++|++++.. ..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            346899999999999999999999999999864 6789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          244 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       244 g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+..+
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~~ga  127 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN----VQVCKFLVESGA  127 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            99999999999999999999999999999999997    999999987653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=1.5e-23  Score=160.63  Aligned_cols=123  Identities=31%  Similarity=0.456  Sum_probs=117.6

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+++.|+..+..+.++.|+..+.+++.  .+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus         4 t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            4 TPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            468899999999999999999988765  488899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  258 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad  258 (295)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++||+
T Consensus        82 ~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           82 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999986

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=8e-24  Score=154.82  Aligned_cols=93  Identities=37%  Similarity=0.614  Sum_probs=78.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCC
Q 022566          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN  245 (295)
Q Consensus       166 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  245 (295)
                      +|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36788888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCC
Q 022566          246 RDIAKVLLINGAD  258 (295)
Q Consensus       246 ~~iv~~Ll~~gad  258 (295)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            8888888888874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=1.9e-23  Score=190.59  Aligned_cols=122  Identities=26%  Similarity=0.371  Sum_probs=87.7

Q ss_pred             CCChHHHHHHHc-CCHHHHHHHHhCCCCCCccC--CCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHH
Q 022566          166 AKWRPLQTLTLS-MQIRYMDMLLDGGLDIDSVD--KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       166 ~g~t~Lh~A~~~-g~~~~v~~Ll~~g~d~~~~d--~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~  242 (295)
                      .+.|+||.|+.. |+.+++++|++.|++++..+  ..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            344677777777 77777777777777777666  667777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       243 ~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+    .+|+++|+.
T Consensus       278 ~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~----~~iv~lLl~  322 (368)
T 3jue_A          278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN----ADIVTLLRL  322 (368)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCC----HHHHHHHHH
Confidence            777777777777777777777777777777777775    677777653

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=4e-23  Score=183.64  Aligned_cols=123  Identities=23%  Similarity=0.232  Sum_probs=116.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCc------cCCCCChHHHHHHHh---CCHHHHHHHHhCCCCCcccCCCCChH
Q 022566          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDS------VDKDGATPLHYAVQV---GAMQSVKLLIKYNVDVNVADNEGWTP  236 (295)
Q Consensus       166 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~------~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~in~~d~~g~Tp  236 (295)
                      ...++||.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|+++|.+|..|+||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            345789999999999999999999999998      688999999999997   89999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          237 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       237 Lh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+|+++|...
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~----~~iv~~Ll~~  281 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH----KECEELLEQA  281 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTC----HHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHh
Confidence            999999999999999999999999999999999999999997    8999999753

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=2.9e-23  Score=182.49  Aligned_cols=125  Identities=19%  Similarity=0.242  Sum_probs=75.7

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCC----cccCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCccCCCCChHHH
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPN----LGKISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDIDSVDKDGATPLH  205 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~----~~~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpLh  205 (295)
                      ...++.|+..++...+..++..|.+++    +...+..|+||||+|+..   |+.+++++|+++|++++.+|..|+||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            345566666666666666666665544    223355566666666665   5566666666666666666666666666


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 022566          206 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA  257 (295)
Q Consensus       206 ~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~ga  257 (295)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            6666666666666666666666666666666666666666666666666655

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.90  E-value=2.1e-23  Score=197.78  Aligned_cols=125  Identities=22%  Similarity=0.210  Sum_probs=118.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCCCcc------CCCCChHHHHHHH---hCCHHHHHHHHhCCCCCcccCCCCChH
Q 022566          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV------DKDGATPLHYAVQ---VGAMQSVKLLIKYNVDVNVADNEGWTP  236 (295)
Q Consensus       166 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~------d~~g~tpLh~A~~---~g~~~~v~~Ll~~ga~in~~d~~g~Tp  236 (295)
                      ...+.||.|+..|+.++++.|++.|++++..      +..|.||||+||.   .|+.+++++|+++|+++|.+|..|+||
T Consensus       131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp  210 (497)
T 3lvq_E          131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  210 (497)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred             ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence            3448999999999999999999999999987      8899999999977   899999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          237 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       237 Lh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      ||+|+..|+.+++++|+++||+++.+|..|.||||+|+..|+    .+++++|.+..+
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~----~~~~~~Ll~~ga  264 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH----KECEELLEQAQA  264 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTC----HHHHHHHHHTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999998    999999987654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=4.3e-24  Score=162.17  Aligned_cols=108  Identities=31%  Similarity=0.429  Sum_probs=103.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHH
Q 022566          163 ISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       163 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~  242 (295)
                      .|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHH
Q 022566          243 SRNRDIAKVLLINGADKSRKTKDGKTAL  270 (295)
Q Consensus       243 ~g~~~iv~~Ll~~gad~~~~d~~g~TpL  270 (295)
                      .|+.+++++|+++|++++.++..|.||-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999884

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1e-22  Score=179.08  Aligned_cols=125  Identities=22%  Similarity=0.272  Sum_probs=117.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCC------ccCCCCChHHHHHHHh---CCHHHHHHHHhCCCCCcccCCCCC
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDID------SVDKDGATPLHYAVQV---GAMQSVKLLIKYNVDVNVADNEGW  234 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~------~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~in~~d~~g~  234 (295)
                      .....++|+.|+..|+.+.+..++..|++++      ..+..|+||||+|+..   |+.+++++|+++|+++|.+|..|+
T Consensus       127 ~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~  206 (278)
T 1dcq_A          127 TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS  206 (278)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred             cchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCC
Confidence            4455689999999999999999999999954      4478899999999999   899999999999999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          235 TPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       235 TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|.+.
T Consensus       207 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~~  260 (278)
T 1dcq_A          207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH----EHCEELLTQA  260 (278)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCC----HHHHHHHHHc
Confidence            99999999999999999999999999999999999999999997    8999999764

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.3e-22  Score=148.34  Aligned_cols=92  Identities=39%  Similarity=0.624  Sum_probs=87.5

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Q 022566          199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  278 (295)
Q Consensus       199 ~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  278 (295)
                      +|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCChHHHHHHhhhcCC
Q 022566          279 DFKSYDLAKLLKILPV  294 (295)
Q Consensus       279 ~~~~~~iv~~L~~lp~  294 (295)
                          .+++++|.+..+
T Consensus        81 ----~~~~~~Ll~~ga   92 (93)
T 1n0q_A           81 ----LEVVKLLLEAGA   92 (93)
T ss_dssp             ----HHHHHHHHHTTC
T ss_pred             ----HHHHHHHHHcCC
Confidence                999999987765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=2.9e-22  Score=182.75  Aligned_cols=145  Identities=24%  Similarity=0.337  Sum_probs=118.0

Q ss_pred             cHHHHHHHHh-cChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          133 EEDLLKEVEQ-LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~-~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...|+.|+.. ++.+.++.||..|++++....+..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g  279 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG  279 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            3478889998 999999999999999987654588999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHhcC
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA---DKSRKTKDGKTALDMSLCYG  277 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~ga---d~~~~d~~g~TpL~~A~~~g  277 (295)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+.++.   +....+..+.|+++++..+.
T Consensus       280 ~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             cHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998764   44566677899998887664

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=7.3e-23  Score=173.22  Aligned_cols=134  Identities=17%  Similarity=0.138  Sum_probs=111.8

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHh
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGATPLHYAVQV  210 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~  210 (295)
                      ....|+.|+..+..+.++.|+..|++++.  .+..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGVNG--LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccCcHHHHHHHHhCCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            35689999999999999999999988775  488999999999999999999999998 999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 022566          211 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK  267 (295)
Q Consensus       211 g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~  267 (295)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|+.+|+.....+..|.
T Consensus       151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            999999999999999999999999999999999999999999999999888776653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=2.7e-22  Score=154.11  Aligned_cols=110  Identities=24%  Similarity=0.301  Sum_probs=103.3

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...+++.|+..++.+.++.|+..+.+++.  .+..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   84 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTS--CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcCc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence            45789999999999999999999988765  4889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHc
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  243 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~  243 (295)
                      +.+++++|+++|++++.+|..|+||||+|+..
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            99999999999999999999999999999433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=1.6e-22  Score=158.30  Aligned_cols=125  Identities=21%  Similarity=0.286  Sum_probs=112.8

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      ...+|+.|+..+..+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        10 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   87 (137)
T 3c5r_A           10 GETLLHIASIKGDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNG   87 (137)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcC
Confidence            35679999999999999999999988775  4889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  258 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad  258 (295)
                      +.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+.+..
T Consensus        88 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           88 HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            99999999999999999999999999999999999998888766543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=1.8e-23  Score=191.37  Aligned_cols=147  Identities=9%  Similarity=0.030  Sum_probs=124.6

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCc-ccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCC---CccCCCCChHHHHHH
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNL-GKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI---DSVDKDGATPLHYAV  208 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~-~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~---~~~d~~g~tpLh~A~  208 (295)
                      ..+|+.|+..|..+.++.|+..|+.... ...+..|.||||+|+..|+.++|++|+++|+++   +..+.. .||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            4789999999999999999999874321 234567889999999999999999999999763   222222 89999999


Q ss_pred             HhCCHHHHHHHHhCCCCCcc--cCCCCChHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHH
Q 022566          209 QVGAMQSVKLLIKYNVDVNV--ADNEGWTPLHIAI-QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL  285 (295)
Q Consensus       209 ~~g~~~~v~~Ll~~ga~in~--~d~~g~TpLh~A~-~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~i  285 (295)
                      ..|+.+++++|+++|++++.  .|..|+||||+|+ ..|+.++|++|+++|++       |.|||++|+.+|+    .++
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~----~ev  240 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGE----KYV  240 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTT----TTH
T ss_pred             HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCC----HHH
Confidence            99999999999999999887  8889999999999 99999999999998753       8999999999998    789


Q ss_pred             HHHhhh
Q 022566          286 AKLLKI  291 (295)
Q Consensus       286 v~~L~~  291 (295)
                      +++|.+
T Consensus       241 v~lL~~  246 (376)
T 2aja_A          241 NPFIAR  246 (376)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999865

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.86  E-value=2.9e-22  Score=165.83  Aligned_cols=129  Identities=13%  Similarity=0.060  Sum_probs=114.2

Q ss_pred             cHHHHHHHHhcCh----HHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCC------HHHHHHHHhCCCCCCccCCCCC-
Q 022566          133 EEDLLKEVEQLLE----PEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ------IRYMDMLLDGGLDIDSVDKDGA-  201 (295)
Q Consensus       133 ~~~l~~ai~~~~~----~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~------~~~v~~Ll~~g~d~~~~d~~g~-  201 (295)
                      ..+|+.|+..+..    +.++.||..|++++..  +..|+||||+|+..++      .+++++|+++|++++.+|..|+ 
T Consensus        39 ~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~t  116 (186)
T 3t8k_A           39 SNILYDVLRNNNDEARYKISMFLINKGADIKSR--TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKI  116 (186)
T ss_dssp             TTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCC--CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTB
T ss_pred             CCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCc
Confidence            4578888888764    4788999999998875  7899999999999987      6889999999999999999999 


Q ss_pred             hHHHHHHHhC-----CHHHHHHHHh-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 022566          202 TPLHYAVQVG-----AMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT  263 (295)
Q Consensus       202 tpLh~A~~~g-----~~~~v~~Ll~-~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d  263 (295)
                      ||||+|+..+     +.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|+++....+.++
T Consensus       117 tpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             CTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            9999999844     4679999999 999999999999999999999999999999998766655554

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=4.4e-21  Score=157.67  Aligned_cols=129  Identities=20%  Similarity=0.274  Sum_probs=115.8

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCChHHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD-KDGATPLHYAV  208 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d-~~g~tpLh~A~  208 (295)
                      .....+++.|+..+..+.++.|+. +.+++.  .+..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            355678999999999999999998 777665  58899999999999999999999999999999998 88999999999


Q ss_pred             HhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Q 022566          209 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  278 (295)
Q Consensus       209 ~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~  278 (295)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..++.                 ..+.+||++|+..|+
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~  171 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGL  171 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCH
Confidence            99999999999999999999999999999999975432                 346789999887765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=3.3e-21  Score=165.91  Aligned_cols=125  Identities=22%  Similarity=0.265  Sum_probs=114.4

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCChHHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD-KDGATPLHYAV  208 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d-~~g~tpLh~A~  208 (295)
                      .....+|+.|+..+..+.++.|+. +++++.  .+..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCC--cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            345678999999999999999998 777765  58899999999999999999999999999999998 78999999999


Q ss_pred             HhCCHHHHHHHHhCCCCCcccCCCCChHHHHHH----------------HcCCHHHHHHHHHcCC
Q 022566          209 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI----------------QSRNRDIAKVLLINGA  257 (295)
Q Consensus       209 ~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~----------------~~g~~~iv~~Ll~~ga  257 (295)
                      ..|+.+++++|+++|++++.+|..|+||||+|+                ..|+.+++++|++++.
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            999999999999999999999999999999888                6688999999998643

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=9.4e-21  Score=142.94  Aligned_cols=90  Identities=37%  Similarity=0.527  Sum_probs=54.1

Q ss_pred             cCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHh
Q 022566          196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC  275 (295)
Q Consensus       196 ~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~  275 (295)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCCCChHHHHHHh
Q 022566          276 YGRDFKSYDLAKLL  289 (295)
Q Consensus       276 ~g~~~~~~~iv~~L  289 (295)
                      .|+    .+++++|
T Consensus       100 ~~~----~~~~~~L  109 (110)
T 2zgd_A          100 NGN----EDLAEIL  109 (110)
T ss_dssp             HTC----HHHHHHH
T ss_pred             cCC----HHHHHHh
Confidence            664    5666555

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.83  E-value=4.6e-22  Score=181.97  Aligned_cols=137  Identities=7%  Similarity=0.006  Sum_probs=112.4

Q ss_pred             hcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCC---CccCCCCChHHHHHHHhCCHHHHHH
Q 022566          142 QLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI---DSVDKDGATPLHYAVQVGAMQSVKL  218 (295)
Q Consensus       142 ~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~---~~~d~~g~tpLh~A~~~g~~~~v~~  218 (295)
                      .+..+..+.++..|.         .++||||+|+..|+.++|++|++.|+..   +..+..|.||||+|+..|+.++|++
T Consensus        76 ~~~~~~~~~l~~~g~---------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~  146 (376)
T 2aja_A           76 RNAKQLWSDAHKKGI---------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR  146 (376)
T ss_dssp             TTCTTHHHHHHHHTC---------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHHHcCC---------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHH
Confidence            345566666666554         3459999999999999999999999832   2334568899999999999999999


Q ss_pred             HHhCCCCC---cccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHH-hcCCCCChHHHHHHhhhc
Q 022566          219 LIKYNVDV---NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR--KTKDGKTALDMSL-CYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       219 Ll~~ga~i---n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~--~d~~g~TpL~~A~-~~g~~~~~~~iv~~L~~l  292 (295)
                      |+++|+++   +..+.. +||||+|+..|+.++|++|+++|++++.  .|..|.||||+|+ ..|+    .+|+++|.+.
T Consensus       147 Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~----~eiv~~Ll~~  221 (376)
T 2aja_A          147 LCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH----HNVINFLLDC  221 (376)
T ss_dssp             HHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC----HHHHHHHTTS
T ss_pred             HHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCC----HHHHHHHHhC
Confidence            99999762   333333 8999999999999999999999999887  8889999999999 9998    9999999763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=1.4e-20  Score=142.62  Aligned_cols=96  Identities=38%  Similarity=0.549  Sum_probs=91.7

Q ss_pred             ccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 022566          195 SVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL  274 (295)
Q Consensus       195 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~  274 (295)
                      .+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCChHHHHHHhhhcCC
Q 022566          275 CYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       275 ~~g~~~~~~~iv~~L~~lp~  294 (295)
                      ..|+    .+++++|.+..+
T Consensus        84 ~~~~----~~~~~~Ll~~ga   99 (115)
T 2l6b_A           84 KNGH----HEIVKLLDAKGA   99 (115)
T ss_dssp             TTTC----HHHHHHHHTTSS
T ss_pred             HCCC----HHHHHHHHHcCC
Confidence            9997    999999987654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=4.3e-20  Score=139.28  Aligned_cols=91  Identities=32%  Similarity=0.486  Sum_probs=86.5

Q ss_pred             cCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHH
Q 022566          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI  241 (295)
Q Consensus       162 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~  241 (295)
                      ..+..|.|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHH
Q 022566          242 QSRNRDIAKVL  252 (295)
Q Consensus       242 ~~g~~~iv~~L  252 (295)
                      ..|+.+++++|
T Consensus        99 ~~~~~~~~~~L  109 (110)
T 2zgd_A           99 DNGNEDLAEIL  109 (110)
T ss_dssp             HHTCHHHHHHH
T ss_pred             HcCCHHHHHHh
Confidence            99999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-20
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-18
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-16
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-14
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	9e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-10
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 9e-23
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
             PL  +     +   D+L+  G+ +D+  + G TPLH A   G ++ VK L+++  DVN
Sbjct: 265 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 324

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
                G++PLH A Q  + DI  +LL NGA  +  + DG T L ++   G       +  
Sbjct: 325 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYI----SVTD 380

Query: 288 LLKIL 292
           +LK++
Sbjct: 381 VLKVV 385

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 8e-22
 Identities = 28/77 (36%), Positives = 44/77 (57%)

Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
           TPLH A  +G +  VK L++     NV++ +  TPLH+A ++ + ++AK LL N A  + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 262 KTKDGKTALDMSLCYGR 278
           K KD +T L  +   G 
Sbjct: 62  KAKDDQTPLHCAARIGH 78

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 3e-19
 Identities = 27/94 (28%), Positives = 44/94 (46%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           +  LL  G   +  +    TPLH A + G  +  K L++    VN    +  TPLH A +
Sbjct: 16  VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR 75

Query: 243 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 276
             + ++ K+LL N A+ +  T  G T L ++   
Sbjct: 76  IGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 109

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 5e-17
 Identities = 36/131 (27%), Positives = 56/131 (42%)

Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQ 214
               N    +TA   PL        +  +  LL+       + K G TPLH A + G ++
Sbjct: 87  ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 146

Query: 215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 274
             +LL++ +   N A   G TPLH+A+   N DI K+LL  G        +G T L ++ 
Sbjct: 147 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 206

Query: 275 CYGRDFKSYDL 285
              +   +  L
Sbjct: 207 KQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 4e-15
 Identities = 34/113 (30%), Positives = 51/113 (45%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           + PL       Q+     LL  G   ++    G TPLH A Q G  + V LL+    + N
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 258

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 280
           + +  G TPLH+  Q  +  +A VL+ +G      T+ G T L ++  YG   
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 311

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 4e-15
 Identities = 32/110 (29%), Positives = 54/110 (49%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           + PL       ++R  ++LL+     ++  K+G TPLH AV    +  VKLL+      +
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 277
                G+TPLHIA +    ++A+ LL  G   + ++  G T L ++   G
Sbjct: 193 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 242

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 8e-15
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 39/174 (22%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV 208
           + +L + A+PN    +     PL     +        LL     +++  KD  TPLH A 
Sbjct: 17  KNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 74

Query: 209 QVGAMQSVKLLIKYNVDV---------------------------------NVADNEGWT 235
           ++G    VKLL++ N +                                       +G+T
Sbjct: 75  RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT 134

Query: 236 PLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           PLH+A +     +A++LL   A  +   K+G T L +++ +     + D+ KLL
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN----NLDIVKLL 184

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 3e-12
 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
             PL           + +LL    + +  +K G TPLH   Q G +    +LIK+ V V+
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
                G+TPLH+A    N  + K LL + AD + KTK G + L  +   G      D+  
Sbjct: 292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH----TDIVT 347

Query: 288 LL 289
           LL
Sbjct: 348 LL 349

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 5e-12
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 2/130 (1%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV 208
             +L ++A PN          PL        +  + +LL  G    S   +G TPLH A 
Sbjct: 149 ELLLERDAHPN--AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 206

Query: 209 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT 268
           +   ++  + L++Y    N    +G TPLH+A Q  + ++  +LL   A+ +   K G T
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 269 ALDMSLCYGR 278
            L +    G 
Sbjct: 267 PLHLVAQEGH 276

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 2e-21
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 12/162 (7%)

Query: 102 NDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLG 161
           N      + +E     GA A  DAA      E+  ++ ++ LL+       + NA  N+G
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAA------EKGHVEVLKILLD---EMGADVNACDNMG 182

Query: 162 KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLI- 220
           + +          +    I    +LLD G D++   + G TPL  AV+   +  V+ L+ 
Sbjct: 183 RNALIHALLSSDDSDVEAI--THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 221 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 262
           + ++++N  D++G T L +A++ + + IA++L   GA     
Sbjct: 241 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 8e-16
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 10/113 (8%)

Query: 183 MDMLLD-GGLDIDSVDKDGATPLHYAVQVGAMQSV----KLLIKYNVDVNVADNEGWTPL 237
           + +LLD  G D+++ D  G   L +A+       V     LL+ +  DVNV    G TPL
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

Query: 238 HIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +A++ ++  + + LL     + +    DGKTAL +++          +A+LL
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL----KKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 8e-13
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 193 IDSVDKDGATPLHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNR----D 247
            + + K GAT L  A + G ++ +K+L+ +   DVN  DN G   L  A+ S +      
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 248 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           I  +LL +GAD + + + GKT L +++          L + L
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKH----LGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLIN 255
           +    L  AVQ   +  V+ L++   +VN  + E GWTPLH A+Q    DI ++LL +
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 144 LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLD-GGLDIDSVDKDGAT 202
           +E     +L+  A  N          PL        +  +  LL+   ++I+  D DG T
Sbjct: 198 VEAITHLLLDHGADVN--VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 203 PLHYAVQVGAMQSVKLLIKYNVDVNVAD 230
            L  AV++   +  +LL K     +  D
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 183 MDMLLDGGLDIDSVDKD-GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 241
           +  LL+GG +++  +++ G TPLH AVQ+     V+LL+++  D  +    G TP  +A 
Sbjct: 21  VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

Query: 242 QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 276
            + +  + K+ L  GAD +     G TA   +  Y
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 229 ADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGR 278
           A  E    L  A+Q+ + D+ + LL  GA+   ++ + G T L  ++   R
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR 51

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 86.3 bits (212), Expect = 3e-20
 Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPL 237
           M       L  G ++     K G T LH A   G  + +KLLI+   DVN+ D +GWTPL
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236

Query: 238 HIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           H A      +  ++L+ N  D     K G+TA D++          D+   L+ L
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA--------DEDILGYLEEL 283

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.9 bits (172), Expect = 9e-15
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
              L           + +L+    D++  D DG TPLH A   G  ++ ++L++   D+ 
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLL 253
             +  G T   +A    + DI   L 
Sbjct: 260 AVNKVGQTAFDVA----DEDILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 248
           V  D       A   G  + V  L++   D+N A+ +G T LH A    N D+
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.9 bits (102), Expect = 9e-06
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 205 HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK 264
               ++    + + L   +++       G T LH+A      ++ K+L+    D + K  
Sbjct: 171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY 230

Query: 265 DGKTALDMSLCYGRDFKSYDLAKLL 289
           DG T L  +  +G+     +  ++L
Sbjct: 231 DGWTPLHAAAHWGK----EEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 230 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
             +       A  S + +    LL  GAD +    DG TAL  +     
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 34/88 (38%), Positives = 46/88 (52%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 244
            LL+ G DI+  + DG T LH A     +  VK L++   ++N  DNEGW PLH A    
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 245 NRDIAKVLLINGADKSRKTKDGKTALDM 272
             DIA+ L+  GA       +G T LD+
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 2e-18
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 4/151 (2%)

Query: 125 AATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMD 184
           A  +++ Y+    + +   L P      + N T     I T+                M 
Sbjct: 147 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 206

Query: 185 MLLD-GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIK---YNVDVNVADNEGWTPLHIA 240
            ++      I S   +  +  +          ++ L         +N  D+ G T L+IA
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

Query: 241 IQSRNRDIAKVLLINGADKSRKTKDGKTALD 271
            +  N  I   LL  GAD     K G   +D
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.1 bits (170), Expect = 2e-14
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 180 IRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHI 239
           +  +D+       +++ D +G T L+ A ++G +  V  L+ Y  D  +A+  G  P+  
Sbjct: 239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 298

Query: 240 AI 241
             
Sbjct: 299 GA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.1 bits (144), Expect = 4e-11
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 121 ASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQI 180
           A        ++ +  L   +++LL PE +E+       +  + S       Q   +S   
Sbjct: 24  ALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDS 83

Query: 181 RYMDM---LLDGGLDID-SVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP 236
              ++     +  L+++  VD+ G TPLH+   +  ++ VK L+K+  +    DN G + 
Sbjct: 84  LLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESC 143

Query: 237 LHIAIQSRN----RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
           L  A++S N         +L         +    +T L   +           AK
Sbjct: 144 LVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 198

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 200 GATPLHYAVQVGAMQSVKLLIKYNVDVNVA-DNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
                H +      +         +++N+  D  G TPLH      N ++ K L+ +G++
Sbjct: 73  NQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN 132

Query: 259 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 292
           +      G++ L  ++    ++ S     LL  L
Sbjct: 133 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 166

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 119 AAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM 178
            + + +  +  +    +    + + L+ +       NA  + G         L       
Sbjct: 217 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG------DTCLNIAARLG 270

Query: 179 QIRYMDMLLDGGLDIDSVDKDGATPLHYAV 208
            I  +D LLD G D    +K G  P+ +  
Sbjct: 271 NISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.2 bits (196), Expect = 4e-18
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 168 WRPLQTLTLSMQIRYM-DMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDV 226
              L        +  +  ++ + G + D  D+DG TP+  A Q G ++ V  LI+    V
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLL 253
              D    T   +A  + + +I  +  
Sbjct: 248 EAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 73.6 bits (179), Expect = 7e-16
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTP 236
           +  +   +  DG    DS    G T LHYA QV  M  VK L+     + +  D +G TP
Sbjct: 165 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 224

Query: 237 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           + +A Q    ++   L+  GA          TA  ++         +++  + 
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH----HNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 63.6 bits (153), Expect = 2e-12
 Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 202 TPLHYAVQ-VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN----- 255
           +P+    +  G+    + + + +V++ +      T LH    + + + ++ L+++     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 256 ---GADKSRKTKDGKTALDMSLCY 276
              GAD +    D  T L +++  
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLA 84

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 1e-08
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 9/73 (12%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNV--------DVNVADNEGW 234
            + +    ++I    +   T LH+     + +  + LI +          DVN  D +  
Sbjct: 17  TEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 75

Query: 235 TPLHIAIQSRNRD 247
           TPL +A+ +R R 
Sbjct: 76  TPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 6e-08
 Identities = 9/55 (16%), Positives = 18/55 (32%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY 222
             P+       +I  +  L+  G  +++VD    T    A        V +  + 
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 4/55 (7%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 235 TPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           +P+ +  ++         +   +      +  +T L             + ++ L
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSS----AEKSEDL 52

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 5e-18
 Identities = 34/105 (32%), Positives = 52/105 (49%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
             PL       +     MLL+GG + D+ D   AT +H A   G ++ + +L+ Y    N
Sbjct: 104 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 163

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 272
           + D EG TPLH+A      + AK+L+  GA    + K+ KT L +
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 6e-17
 Identities = 30/134 (22%), Positives = 42/134 (31%), Gaps = 33/134 (24%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVGAMQS----------------------------- 215
            +L         D+D  T LH+A   G  +                              
Sbjct: 22  SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 81

Query: 216 ----VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 271
               VK L+     VN  +  G TPLH A      +IA +LL  GA+   K     TA+ 
Sbjct: 82  RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH 141

Query: 272 MSLCYGRDFKSYDL 285
            +   G     + L
Sbjct: 142 RAAAKGNLKMIHIL 155

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 2e-16
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 4/122 (3%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
           W PL     + +   +  LL  G  +++V+++G TPLHYA      +   +L++   + +
Sbjct: 71  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 130

Query: 228 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 287
             D+   T +H A    N  +  +LL   A  + +  +G T L ++    R     + AK
Sbjct: 131 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER----VEEAK 186

Query: 288 LL 289
           LL
Sbjct: 187 LL 188

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 5e-14
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV 208
             +L   A P+       +   +        ++ + +LL      +  D +G TPLH A 
Sbjct: 120 VMLLEGGANPD--AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 177

Query: 209 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 253
               ++  KLL+     + + + E  TPL +A +     I K ++
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.4 bits (173), Expect = 2e-15
 Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPL 237
                ++ L+    DI++ D  G T LH+A  V   ++V +L+ ++ + +  D++  TPL
Sbjct: 101 AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 160

Query: 238 HIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            +A +  + + +K LL N A++       +   D++         +D+ +LL
Sbjct: 161 FLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLH----HDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.7 bits (153), Expect = 1e-12
 Identities = 19/99 (19%), Positives = 40/99 (40%)

Query: 154 QNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM 213
             A  ++     +    L           +++LL    + D+ D    TPL  A + G+ 
Sbjct: 110 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 169

Query: 214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 252
           ++ K L+    +  + D+    P  +A +  + DI ++L
Sbjct: 170 EASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 216 VKLLIKYNVDVNV-ADNEGWTPLHIAIQSRNRDIAKVL 252
           +  L+    ++N   D  G T LH+A +    D AK L
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 183 MDMLLDGGLDIDS-VDKDGATPLHYAVQVGAMQSVKLLIKYN 223
           +  LL  G ++++ +DK G T LH A +     + K L+   
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG 46

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.2 bits (176), Expect = 4e-15
 Identities = 21/159 (13%), Positives = 43/159 (27%), Gaps = 17/159 (10%)

Query: 129 ISKYEED---------LLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ 179
           I  YE D         L + + Q         L   +      I     + ++ +   + 
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 66

Query: 180 IRYMDM---LLDGGLDIDSVDKDGATPLHYAVQVG---AMQSVKLLIKYNVDVNVADNEG 233
           + Y            D              A   G   A+ ++ LL+  +  V V   E 
Sbjct: 67  LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 126

Query: 234 WTPLHIAIQSRNRDIAKVLLINGAD--KSRKTKDGKTAL 270
           +    +A ++ +  +   L         +    +   A 
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 53.4 bits (127), Expect = 9e-09
 Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 5/67 (7%)

Query: 192 DIDSVDKDGATPLHYAVQVGAMQSVKLLI-----KYNVDVNVADNEGWTPLHIAIQSRNR 246
                       L        +  ++ L+     K          +    L +A++  N+
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

Query: 247 DIAKVLL 253
               +LL
Sbjct: 331 GACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 5e-08
 Identities = 20/139 (14%), Positives = 33/139 (23%), Gaps = 24/139 (17%)

Query: 153 NQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA 212
           N    P L  I    W  L    +S             L + ++    A  +        
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFIS----------ANELSLMTLSYKEAIHIFLPGTKNM 58

Query: 213 MQSVKLLIKYNVDVNVADNEGW-----------TPLHIAIQSRNRDIAKV---LLINGAD 258
            Q  +LL  Y    N    + W               +A  +           LL +   
Sbjct: 59  EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI 118

Query: 259 KSRKTKDGKTALDMSLCYG 277
                 +   A  ++   G
Sbjct: 119 VKVIQAENYQAFRLAAENG 137

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 17/157 (10%), Positives = 44/157 (28%), Gaps = 17/157 (10%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV---DKDGATPLH 205
             +     T  +  I    +   +    +  +  ++ L +      +     ++      
Sbjct: 143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 202

Query: 206 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI-------QSRNRDIAKVLLINGAD 258
            AV  G    +  L+   V +  A+   +      +        +R +++     ++  D
Sbjct: 203 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD 262

Query: 259 ------KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
                    +   G   L  +L    D    D  + L
Sbjct: 263 GVFDLVTKSECLQGFYML-RNLIRRNDEVLLDDIRFL 298

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.7 bits (107), Expect = 3e-06
 Identities = 19/163 (11%), Positives = 35/163 (21%), Gaps = 26/163 (15%)

Query: 149 REILNQNATPNLGKISTAK-WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYA 207
             +     T     I     +              ++ LLD  + +   +          
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 237

Query: 208 V---------QVGAMQSVKLLIKYNVDVNVADNE-------GWTPLHIAIQSRNRDIAKV 251
           V         ++  M     L   +   ++               L         D  + 
Sbjct: 238 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRF 297

Query: 252 LLINGADKSRK-----TKDGKTALDMSLCYGRDFKSYDLAKLL 289
           LL     K+         D    L ++L  G          LL
Sbjct: 298 LLSIPGIKALAPTATIPGDANELLRLALRLGN----QGACALL 336

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (167), Expect = 2e-14
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
           TPLH AV+  A   ++LL+K   D       G TPL  A+   N  +A++L  +GA +  
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP- 252

Query: 262 KTKDG 266
             +DG
Sbjct: 253 --EDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 6e-09
 Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 3/110 (2%)

Query: 160 LGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLD---IDSVDKDGATPLHYAVQVGAMQSV 216
            G ++      L    +     ++D LL        +D  +  G T LH A  +G   +V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 217 KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 266
           + L      V VA+  G T LH+A + R    A VLL       R   D 
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 7e-09
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 9/155 (5%)

Query: 140 VEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMD----MLLDGGLDIDS 195
              LL+P      + + T                  +  Q    +       D  L +++
Sbjct: 94  ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA 153

Query: 196 VDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV-ADNEGWTPLHIAIQSRNRDIAKVLLI 254
            + DG TPLH AV     + V+LL     D+N      G TPLH+A++++   + ++LL 
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 255 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
            GAD + +   G+T L  +L          LA+LL
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPN----PILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY 222
           +++LL  G D  +    G TPL  A+        +LL  +
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 3e-14
 Identities = 20/83 (24%), Positives = 39/83 (46%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
             PL     +  +  + +LL  G ++++    G++ LH A   G +  V+ L++   D +
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 228 VADNEGWTPLHIAIQSRNRDIAK 250
           + +    TPL +A   R  DI +
Sbjct: 205 LKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-11
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKY----NVDVNVADNEGWTPLHIAIQ 242
           DG TPLH AV  G + +V  L+        ++++ +N   TPLH+A+ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI 49

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-10
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK-DGATPLHYAVQVGAMQSVKLLIKYNVDV 226
              L     +     + +LL+ G DID+VD   G +PL +AV+  ++  V+LL+++  +V
Sbjct: 111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 170

Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 278
           N     G + LH A       + + L+ +GAD S K     T L ++     
Sbjct: 171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-07
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 232 EGWTPLHIAIQSRNRDIAKVLL----INGADKSRKTKDGKTALDMSLCY 276
           +G TPLHIA+   N      L+      G +        +T L +++  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
           +++   GG ++D  +    TPLH AV       V+LL+         D  G T  H+A +
Sbjct: 23  VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 82

Query: 243 SRNRDIAKVLLINGA----DKSRKTKDGKTALDMSLCYGRDFKSYDL 285
            R+    + LL + A    D   +  DG TAL +++          L
Sbjct: 83  HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.5 bits (163), Expect = 7e-14
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 168 WRPLQTLTLSMQIR-YMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLI-KYNVD 225
             PL        ++    +   G   ++  DK G TPL +A+  G   +  LL+ KY  +
Sbjct: 139 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 198

Query: 226 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 258
            ++ DN+G     +A+   N  + K  L N  D
Sbjct: 199 YDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 3e-12
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVD-VNVADNEGWTP 236
                   L++ G  +   DK    PLH A  VG+++ ++LL       VN  D +GWTP
Sbjct: 116 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 175

Query: 237 LHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
           L  A+   + D A +L+   GA+       G  A D++L       +  + K  
Sbjct: 176 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL-------NEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.1 bits (141), Expect = 5e-11
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 202 TPLHYAVQVGAMQSVK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
            PLH A        V+ LL      +   D +G  PLH ++  +  +I   LL   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 235 TPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSY 283
            PLH A         + LL    +   +K +DG+  L  S+ +     + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS 51

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 185 MLLDGGLDIDSVDKDGATPLHYAVQVG 211
           +L      +   D+DG  PLH++V   
Sbjct: 19  LLHSKPSLLLQKDQDGRIPLHWSVSFQ 45

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (153), Expect = 1e-12
 Identities = 18/85 (21%), Positives = 33/85 (38%)

Query: 183 MDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 242
             ++  G         +G T LH AV +     V LL+K   DVN    +G++P  +   
Sbjct: 128 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 187

Query: 243 SRNRDIAKVLLINGADKSRKTKDGK 267
             +  I + L     +  +   + +
Sbjct: 188 RPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 3e-10
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKY----NVDVNVADNEGWTPLHIAIQ 242
           DG + LH A+          +I+        +N  +N   TPLH+A+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-07
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 203 PLHYAVQVGAMQSVKLLIKYNVDV-NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 261
            LH A   G +  V+LL+    DV       G T LH+A+  +N D+  +LL  GAD +R
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 173

Query: 262 KTKDGKTALDMSLCYGRDFKSYDLAKLLK 290
            T  G +   ++        S  + + L 
Sbjct: 174 VTYQGYSPYQLTWGRP----STRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-07
 Identities = 10/65 (15%), Positives = 21/65 (32%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVN 227
              L           + +LL  G D++ V   G +P        + +  + L +  ++  
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 205

Query: 228 VADNE 232
               E
Sbjct: 206 QMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 232 EGWTPLHIAIQSRNRDIA----KVLLINGADKSRKTKDGKTALDMSLCY 276
           +G + LH+AI    + +     + +  + A  + +    +T L +++  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (136), Expect = 9e-11
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPL 237
                +++LL  G D+++ D    T LH+A +    + V+LLIKY  DV+       T  
Sbjct: 78  GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137

Query: 238 HIAIQSRNRDIAKVL 252
            I+I + N D+A++L
Sbjct: 138 DISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (94), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 222 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK 281
           +  DVN  D    T LH A +  ++++ ++L+  GAD   ++K  KTA D+S+  G    
Sbjct: 89  HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN--- 145

Query: 282 SYDLAKLLK 290
             DLA++L+
Sbjct: 146 -EDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 199 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH 238
           D    L  A + G    V++L+         D  G +PLH
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLH 39

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 3e-10
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPL 237
             +  + +L++ G D++  D  GA P+H AVQ G    V  L     D++  D  G TPL
Sbjct: 79  GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPL 137

Query: 238 HIAIQSRNRDIAKVLL 253
            +A+Q   +D+  +L 
Sbjct: 138 ELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 30/179 (16%)

Query: 114 RSG---IGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRP 170
           R+G    GAAA GD            ++EV +LL    RE+++ +A    GK  TA    
Sbjct: 1   RAGDRLSGAAARGD------------VQEVRRLLH---RELVHPDALNRFGK--TALQVM 43

Query: 171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD 230
           +   T                  +  D  G +P+H A + G + ++K+L+++  DVNV D
Sbjct: 44  MFGSTAIALELLKQGA-----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98

Query: 231 NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 289
             G  P+H+A+Q  +  +   L    +D  R+   G T L+++L  G      DL  +L
Sbjct: 99  GTGALPIHLAVQEGHTAVVSFL-AAESDLHRRDARGLTPLELALQRGA----QDLVDIL 152

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 42/116 (36%)

Query: 186 LLDGGLDID------SVDKDGATPLHYAVQV---GAMQSVKLLIKYNVDV---------- 226
               G+D+       +  +   T LH AV+     ++  V  L++ + ++          
Sbjct: 25  AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 84

Query: 227 -----------------------NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 259
                                   +A+  G TPL IA + ++    ++L    + +
Sbjct: 85  LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 199 DGATPLHY---AVQVGAMQSVKLLIKYNVDVNV------ADNEGWTPLHIAIQSRNR--- 246
           D A  LH    AV+   +  +       VD+              T LH+A++S +R   
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 247 DIAKVLLINGAD 258
            I   L+ N  +
Sbjct: 62  HIVDFLVQNSGN 73

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-06
 Identities = 6/35 (17%), Positives = 15/35 (42%)

Query: 222 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 256
              +V   +++G T   +A      ++  ++  NG
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 5e-06
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH 238
             L  A   G ++ +  L++ NV+VN  +  G T L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 6/45 (13%), Positives = 13/45 (28%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKY 222
                  ++     ++   +  G T    A   G  + V L+   
Sbjct: 111 HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 235 TPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 276
             L  A    + +    LL N  + + +   G+TAL +    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG 44

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 227 NVADNEGWTPLHIAIQSRNRDIAKVLLINGA 257
           +V D  G  P+ +A +  +RD+A+  L   A
Sbjct: 96  DVRDAWGRLPVDLAEELGHRDVAR-YLRAAA 125

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 5/108 (4%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAV 208
           + I+ +   P+L                  +I    +    G+++++ D DG TPLH A 
Sbjct: 18  QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAADSDGWTPLHCAA 75

Query: 209 QVGAMQSVKLLIKYNVDVNVADN---EGWTPLHIAIQSRNRDIAKVLL 253
               +Q  K L++    V        +        ++      ++ L 
Sbjct: 76  SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 6e-04
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 36/122 (29%)

Query: 202 TPLHYAVQVGAMQSVKLLIKYNVDVNVADN------------------------------ 231
             L  +   G    V+ +I    D ++ ++                              
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 232 ---EGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKSYDLAK 287
              +GWTPLH A    N  + K L+ +GA     T  D +TA D   C   +      ++
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD--KCEEMEEGYTQCSQ 120

Query: 288 LL 289
            L
Sbjct: 121 FL 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.9
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.85
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.82
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.79
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.72

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-28  Score=194.93  Aligned_cols=151  Identities=26%  Similarity=0.377  Sum_probs=141.0

Q ss_pred             cHHHHHHHHhcChHHHHHHHhc-CCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQ-NATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVG  211 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~-g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  211 (295)
                      +..|+.|+..|+.+.++.||.. +.+++.  .|..|+||||+|+ .|+.+++++|++++.+++..+..|.+|+++++..+
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~--~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTC--CCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCc--cCCCCCccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            4679999999999999999986 556654  5899999999987 48899999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          212 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       212 ~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      +.+++++++++|++++.+|..|+||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+.+|+    .+|+++|++
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~----~~iv~~Ll~  154 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGA----QDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCC----HHHHHHHHT
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCC----HHHHHHHHh
Confidence            999999999999999999999999999999999999999887 789999999999999999999998    999999975

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-27  Score=188.51  Aligned_cols=151  Identities=29%  Similarity=0.363  Sum_probs=144.0

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+|+.|+..|+.+.++.||+.|++.+   .+..|+||||+|+..++.++++.++.........+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc---cccCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            478999999999999999999998766   48899999999999999999999999988888888889999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhh
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  290 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~  290 (295)
                      .+++++|+.+|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+    .+|+++|+
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~----~eiv~lL~  153 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN----EDLAEILQ  153 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHC
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCC----HHHHHhCc
Confidence            999999999999999999999999999999999999999999999999999999999999999998    99999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.7e-28  Score=205.76  Aligned_cols=94  Identities=34%  Similarity=0.468  Sum_probs=85.4

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHhCCCCCccc-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHh
Q 022566          197 DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA-DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC  275 (295)
Q Consensus       197 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~  275 (295)
                      +..|.||||+|+..++.+++++|++.+++++.. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       155 d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~  234 (255)
T d1oy3d_         155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL  234 (255)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             cccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            346889999999999999999999999888754 6789999999999999999999999999999999999999999999


Q ss_pred             cCCCCChHHHHHHhhhcCC
Q 022566          276 YGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       276 ~g~~~~~~~iv~~L~~lp~  294 (295)
                      +++    .+|+++|.+..+
T Consensus       235 ~~~----~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         235 RPN----PILARLLRAHGA  249 (255)
T ss_dssp             SSC----HHHHHHHHHTTC
T ss_pred             CCC----HHHHHHHHHcCC
Confidence            997    899999987654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-27  Score=199.49  Aligned_cols=152  Identities=26%  Similarity=0.327  Sum_probs=141.2

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ...+..++..+..+.++.|+..+++++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus        71 ~~~~~~~~~~~~~~i~~~Ll~~~~d~~~--~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~  148 (223)
T d1uoha_          71 WSPLHIAASAGRDEIVKALLGKGAQVNA--VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN  148 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccchhHHHhccCceeEe--eCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCC
Confidence            4557778888899999999999987765  58899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      ..++++|+..|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|. .|+    .+|+++|.+
T Consensus       149 ~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~----~~i~~~Ll~  222 (223)
T d1uoha_         149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGL----GLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTH----HHHHHHHHC
T ss_pred             cchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCC----HHHHhcccC
Confidence            99999999999999999999999999999999999999999999999999999999999984 564    789998864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.6e-27  Score=186.78  Aligned_cols=153  Identities=24%  Similarity=0.358  Sum_probs=145.0

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+|+.|+..++.+.++.|++.|++++.  .|..|+||||+|+ .|+.+++++|+++|++++..+..|.++++.++..+.
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~--~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQNNVNVNA--QNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTC--CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHCCCCcCc--cCCcccccccccc-cccccccccccccccccccccccCcccccccccccc
Confidence            4679999999999999999999999876  4889999999886 789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~ga-d~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      ..+++.|+..+.+++..+..|.+|||+|+..++.+++++|+++|+ +++.+|..|.||||+|+.+|+    .+|+++|.+
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~----~~iv~~Ll~  154 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQA  154 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC----HHHHHHHHh
Confidence            999999999999999999999999999999999999999999987 899999999999999999997    999999976


Q ss_pred             c
Q 022566          292 L  292 (295)
Q Consensus       292 l  292 (295)
                      .
T Consensus       155 ~  155 (156)
T d1ihba_         155 N  155 (156)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-28  Score=186.80  Aligned_cols=120  Identities=23%  Similarity=0.297  Sum_probs=114.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCC-hHHHHHHHcCC
Q 022566          167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW-TPLHIAIQSRN  245 (295)
Q Consensus       167 g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~-TpLh~A~~~g~  245 (295)
                      +.++||+|+..|+.++|++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            458999999999999999999999999999999999999775 7999999999999999999998876 69999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          246 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       246 ~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      .+++++|+++|++++.+|..|+||||+|+.+|+    .+|+++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~----~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH----RDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC----HHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCC----HHHHHHHHh
Confidence            999999999999999999999999999999998    999999974

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.9e-27  Score=197.00  Aligned_cols=152  Identities=22%  Similarity=0.287  Sum_probs=126.9

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCC--------------------------------
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ--------------------------------  179 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~--------------------------------  179 (295)
                      ...+|+.|+..+..+.++.|+..|+.++..  +..+.++++.++..++                                
T Consensus        23 G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (209)
T d1ot8a_          23 GETSLHLAARFARADAAKRLLDAGADANSQ--DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL  100 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhhccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            355677777777777777777777776643  5555566655555443                                


Q ss_pred             --HHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 022566          180 --IRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA  257 (295)
Q Consensus       180 --~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~ga  257 (295)
                        ..+.+.|+..+++++.++..|.|||++++..+...+++.|+..+++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus       101 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         101 AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             TCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCC
Confidence              234445566677777777789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHhcCCCCChHHHHHHh
Q 022566          258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  289 (295)
Q Consensus       258 d~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L  289 (295)
                      +++.+|..|.||||+|+++|+    .+||++|
T Consensus       181 d~n~~d~~g~Tpl~~A~~~~~----~~iv~lL  208 (209)
T d1ot8a_         181 NREITDHMDRLPRDVASERLH----HDIVRLL  208 (209)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTC----HHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCC----HHHHhhc
Confidence            999999999999999999998    8999998

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=8.6e-28  Score=182.76  Aligned_cols=107  Identities=28%  Similarity=0.390  Sum_probs=104.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHH
Q 022566          168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD  247 (295)
Q Consensus       168 ~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~  247 (295)
                      .|||++|+..|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 022566          248 IAKVLLINGADKSRKTKDGKTALDMSL  274 (295)
Q Consensus       248 iv~~Ll~~gad~~~~d~~g~TpL~~A~  274 (295)
                      ++++|+++|++++.+|.+|.||||+|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999999883

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.5e-27  Score=180.85  Aligned_cols=120  Identities=31%  Similarity=0.388  Sum_probs=112.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHH
Q 022566          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  248 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~i  248 (295)
                      ++|+.||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCC-CCCCHHHHHH--hcCCCCChHHHHHHhhhc
Q 022566          249 AKVLLINGADKSRKTK-DGKTALDMSL--CYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       249 v~~Ll~~gad~~~~d~-~g~TpL~~A~--~~g~~~~~~~iv~~L~~l  292 (295)
                      +++|+++|++++..+. .|+||++++.  ..|+    .+|+++|...
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~----~eiv~~L~~~  125 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY----TQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTC----CCHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcCh----HHHHHHHHhH
Confidence            9999999999998775 5899988764  5566    7999999754

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=4e-26  Score=196.43  Aligned_cols=152  Identities=19%  Similarity=0.227  Sum_probs=123.3

Q ss_pred             HHHHHHHHhcChHHHHH--------HHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHH
Q 022566          134 EDLLKEVEQLLEPEERE--------ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLH  205 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~--------lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh  205 (295)
                      .+|+.|+..+..+.++.        ++..|+++|.  +|..|+||||+|+..|+.+++++|+++|++++.++..|.|||+
T Consensus        35 T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~--~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~  112 (277)
T d2fo1e1          35 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA--MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH  112 (277)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc--cCCCCCeeecccccccccccccccccccccccccccccccccc
Confidence            46777777776655544        4666777775  4888999999999999999999999999998888776666666


Q ss_pred             HHHHhC--------------------------------------------------------------------------
Q 022566          206 YAVQVG--------------------------------------------------------------------------  211 (295)
Q Consensus       206 ~A~~~g--------------------------------------------------------------------------  211 (295)
                      +|+..+                                                                          
T Consensus       113 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  192 (277)
T d2fo1e1         113 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH  192 (277)
T ss_dssp             HHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH
T ss_pred             chhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccc
Confidence            665544                                                                          


Q ss_pred             ------CHHHHHHH-HhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHH
Q 022566          212 ------AMQSVKLL-IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD  284 (295)
Q Consensus       212 ------~~~~v~~L-l~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~  284 (295)
                            +.++++++ ...+.+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+    .+
T Consensus       193 ~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~----~~  268 (277)
T d2fo1e1         193 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH----HN  268 (277)
T ss_dssp             HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC----HH
T ss_pred             cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC----HH
Confidence                  44445443 34566777889999999999999999999999999999999999999999999999997    99


Q ss_pred             HHHHhhh
Q 022566          285 LAKLLKI  291 (295)
Q Consensus       285 iv~~L~~  291 (295)
                      |+++|.+
T Consensus       269 iv~lL~~  275 (277)
T d2fo1e1         269 IVDIFDR  275 (277)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999864

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.3e-25  Score=184.11  Aligned_cols=155  Identities=23%  Similarity=0.275  Sum_probs=139.4

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+|+.|+..+..+.++.++..+......  +..+.++++.++..++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus        39 TpLh~Aa~~g~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~  116 (223)
T d1uoha_          39 TALHWACSAGHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH  116 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHhhhhcccccccccccccccc--cccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCH
Confidence            4677888888888888887777665543  55667788888888888899999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          214 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      +++++|+++|++++.++..|.||||+|+..++.+++++|+.+|++++.+|..|.||||+|+..|+    .+++++|.+.+
T Consensus       117 e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~----~~~v~~LL~~G  192 (223)
T d1uoha_         117 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER----VEEAKLLVSQG  192 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCc----HHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999997    99999998765


Q ss_pred             C
Q 022566          294 V  294 (295)
Q Consensus       294 ~  294 (295)
                      +
T Consensus       193 a  193 (223)
T d1uoha_         193 A  193 (223)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-25  Score=201.70  Aligned_cols=156  Identities=28%  Similarity=0.418  Sum_probs=145.9

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ..+++.++..+..+.++.++..+...+.  .+..|.|||+.|+..++.+++++|+++|++++..+..+.||||+++..++
T Consensus       232 ~t~l~~a~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~  309 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN  309 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             CCHHHHHHHhCcHhHhhhhhcccccccc--ccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCc
Confidence            3467889999999999999888777665  48889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      ..+++++++.|+++|.+|..|+||||+|++.|+.++|++|+++||+++.+|.+|+||||+|++.|+    ++||++|+.+
T Consensus       310 ~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~----~~iv~~L~~~  385 (408)
T d1n11a_         310 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY----ISVTDVLKVV  385 (408)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC----HHHHHHHHHH
T ss_pred             ceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998    8999999766


Q ss_pred             CC
Q 022566          293 PV  294 (295)
Q Consensus       293 p~  294 (295)
                      ..
T Consensus       386 ~~  387 (408)
T d1n11a_         386 TD  387 (408)
T ss_dssp             CC
T ss_pred             Hh
Confidence            43

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.9e-25  Score=188.63  Aligned_cols=158  Identities=27%  Similarity=0.337  Sum_probs=135.6

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCC--------------
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK--------------  198 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~--------------  198 (295)
                      ...|+.|+..++.+.++.|++.|++++.. .+..|+||||+|+..|+.+++++|++.+..+...+.              
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~-~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQ-EEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            45689999999999999999999998865 356799999999999999999999988765433221              


Q ss_pred             --------------------------------------------------------------CCChHHHHHHHhCCHHHH
Q 022566          199 --------------------------------------------------------------DGATPLHYAVQVGAMQSV  216 (295)
Q Consensus       199 --------------------------------------------------------------~g~tpLh~A~~~g~~~~v  216 (295)
                                                                                    .|.||||+|+..|+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence                                                                          588999999999877666


Q ss_pred             HHHH--------------------------------------hCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCC
Q 022566          217 KLLI--------------------------------------KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI-NGA  257 (295)
Q Consensus       217 ~~Ll--------------------------------------~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~ga  257 (295)
                      ++|+                                      ++|++++.++..|.||||+|+..|+.+++++|++ .|+
T Consensus       165 ~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~  244 (285)
T d1wdya_         165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  244 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred             HHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCC
Confidence            6655                                      4455666678889999999999999999999997 499


Q ss_pred             CCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCCC
Q 022566          258 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE  295 (295)
Q Consensus       258 d~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~~  295 (295)
                      +++.+|.+|.||||+|+.+|+    .+++++|.+..++
T Consensus       245 din~~d~~G~TpL~~A~~~~~----~eiv~~Ll~~GAd  278 (285)
T d1wdya_         245 EINDTDSDGKTALLLAVELKL----KKIAELLCKRGAS  278 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHSSC
T ss_pred             CCcCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCC
Confidence            999999999999999999997    9999999887654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=183.62  Aligned_cols=149  Identities=22%  Similarity=0.281  Sum_probs=134.2

Q ss_pred             cHHHHHHHHhcChHHHHHHHh----cCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCC----------
Q 022566          133 EEDLLKEVEQLLEPEEREILN----QNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK----------  198 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~----~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~----------  198 (295)
                      ..+|+.|+..+..+.++.|+.    .|++++.  .|..|+||||+|+..|+.+++++|+++|++++....          
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~--~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCc--cCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            457999999999999888875    6676665  588999999999999999999999999988766443          


Q ss_pred             -------------------------------------------------------------CCChHHHHHHHhCCHHHHH
Q 022566          199 -------------------------------------------------------------DGATPLHYAVQVGAMQSVK  217 (295)
Q Consensus       199 -------------------------------------------------------------~g~tpLh~A~~~g~~~~v~  217 (295)
                                                                                   .+.+||+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                                         5778999999999999999


Q ss_pred             HHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHH
Q 022566          218 LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK  287 (295)
Q Consensus       218 ~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~  287 (295)
                      .++..|..++.+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|+.+|+    ++|||
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~----~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV----IDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH----HHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC----ccccC
Confidence            9999999999999999999999999999999999999999999999999999999999986    77775

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=2.4e-24  Score=186.91  Aligned_cols=89  Identities=20%  Similarity=0.299  Sum_probs=70.4

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      ...|+.|+..|+.+.++.||+.|++++.  .|..|+||||+|+..|+.+++++|+++|++....+..+.+||++|+..++
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~--~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTC--BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCc--cCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            3569999999999999999999998876  48899999999999999999999999998877666555555555555555


Q ss_pred             HHHHHHHHhCC
Q 022566          213 MQSVKLLIKYN  223 (295)
Q Consensus       213 ~~~v~~Ll~~g  223 (295)
                      .++++.|+++|
T Consensus       119 ~~~~~~l~~~~  129 (291)
T d1s70b_         119 LDIAEYLISQG  129 (291)
T ss_dssp             HHHHHHHHHTT
T ss_pred             cchhhcccccC
Confidence            55555554444

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.5e-24  Score=178.28  Aligned_cols=139  Identities=25%  Similarity=0.294  Sum_probs=90.8

Q ss_pred             HHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCcc---CC-------------
Q 022566          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV---DK-------------  198 (295)
Q Consensus       135 ~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~---d~-------------  198 (295)
                      +|+.|+..++.+.++.||..... .+..+|.+|+||||+|+..|+.+++++|+++|++++..   +.             
T Consensus         3 pLh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           3 PLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             hHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            67888888888888888876432 23446788888888888888888888888888876543   22             


Q ss_pred             -------------------------------------------------------CCChHHHHHHHhCCHHHHHHHHhCC
Q 022566          199 -------------------------------------------------------DGATPLHYAVQVGAMQSVKLLIKYN  223 (295)
Q Consensus       199 -------------------------------------------------------~g~tpLh~A~~~g~~~~v~~Ll~~g  223 (295)
                                                                             .|+||||+|+..|+.+++++|++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence                                                                   4555555555555555555555554


Q ss_pred             -CCCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH
Q 022566          224 -VDVNVADNEGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSL  274 (295)
Q Consensus       224 -a~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~TpL~~A~  274 (295)
                       .+++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence             4455555555555555555555555555554 35555555555555555554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.7e-24  Score=170.77  Aligned_cols=125  Identities=18%  Similarity=0.227  Sum_probs=100.5

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcc----cCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCCCccCCCCChHHHH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLG----KISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDIDSVDKDGATPLHY  206 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~----~~d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~  206 (295)
                      ..++.|+..++...+..++..|.+.+..    ..+..|+||||+|+..   +..+++++|+++|++++.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            3577888888888888888887765432    2356678888888864   56788888888888888888888888888


Q ss_pred             HHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 022566          207 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  258 (295)
Q Consensus       207 A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad  258 (295)
                      |+..|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            8888888888888888888888888888888888888888888888877654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.5e-24  Score=178.68  Aligned_cols=156  Identities=24%  Similarity=0.270  Sum_probs=139.8

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCc------cCCCCChHHH
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDS------VDKDGATPLH  205 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~------~d~~g~tpLh  205 (295)
                      -..+|+.|+..+....++.|++.|++++..  +..|.||||.++..++.++++.|+..+.....      ....|.||||
T Consensus        39 g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~--d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~  116 (221)
T d1iknd_          39 QQTPLHLAVITNQPEIAEALLGAGCDPELR--DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  116 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHCCCSCCCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             CCcccccccccccccccccccccccccccc--ccccccccccccccccccccchhhhhcccccccccccccccccchhhh
Confidence            346799999999999999999999888764  88899999999999999999999998765432      3456899999


Q ss_pred             HHHHhCCHHHHHHHHhCCCCCcccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHH
Q 022566          206 YAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD  284 (295)
Q Consensus       206 ~A~~~g~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~  284 (295)
                      +|+..++.+++++|+..|+.++..+ ..|+||||+|++.|+.+++++|+++|+|++.+|.+|+||||+|+..++    .+
T Consensus       117 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~----~~  192 (221)
T d1iknd_         117 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS----TR  192 (221)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC----HH
T ss_pred             HHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCC----HH
Confidence            9999999999999999999988765 579999999999999999999999999999999999999999999997    89


Q ss_pred             HHHHhhhcC
Q 022566          285 LAKLLKILP  293 (295)
Q Consensus       285 iv~~L~~lp  293 (295)
                      ++++|..+.
T Consensus       193 ~~~~l~~~~  201 (221)
T d1iknd_         193 IQQQLGQLT  201 (221)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHHcC
Confidence            999997653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.2e-23  Score=166.95  Aligned_cols=121  Identities=21%  Similarity=0.262  Sum_probs=112.1

Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCCCcc------CCCCChHHHHHHHh---CCHHHHHHHHhCCCCCcccCCCCChHHH
Q 022566          168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSV------DKDGATPLHYAVQV---GAMQSVKLLIKYNVDVNVADNEGWTPLH  238 (295)
Q Consensus       168 ~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~------d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~in~~d~~g~TpLh  238 (295)
                      ...|..|+..+++..+..++..|++++..      +..|+||||+|+..   +..+++++|+++|+++|.+|..|+||||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            35789999999999999999999887765      66799999999985   6789999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          239 IAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       239 ~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+    .+|+++|.+.
T Consensus        87 ~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~----~~i~~~L~~~  136 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH----EHCEELLTQA  136 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHH
T ss_pred             cccccccccccccccccCccccccCCCCCCHHHHHHHcCC----HHHHHHHHHh
Confidence            9999999999999999999999999999999999999997    8999999764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.90  E-value=1.3e-23  Score=182.33  Aligned_cols=142  Identities=27%  Similarity=0.382  Sum_probs=128.4

Q ss_pred             hcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC--------------
Q 022566          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD--------------  197 (295)
Q Consensus       132 ~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d--------------  197 (295)
                      ...+|+.|+..+..+.++.|+..+.++...  +..+.+||+.++..++.++++.|+++|+..+..+              
T Consensus        73 G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~--~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~  150 (291)
T d1s70b_          73 GLTALHQACIDDNVDMVKFLVENGANINQP--DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA  150 (291)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred             CCcHHHHHHhcCCceeeeeecccccccccc--cccccccccccccccccchhhcccccCcccccccccCccccccccccc
Confidence            345899999999999999999999876654  7778899999999999999999999887655443              


Q ss_pred             ----------------------------------------------CCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCC
Q 022566          198 ----------------------------------------------KDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN  231 (295)
Q Consensus       198 ----------------------------------------------~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~  231 (295)
                                                                    ..|.||||+|+..|+.+++++|++.|+++|.++.
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~  230 (291)
T d1s70b_         151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (291)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             cchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceeccccccc
Confidence                                                          2688999999999999999999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHh
Q 022566          232 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC  275 (295)
Q Consensus       232 ~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~~  275 (295)
                      .|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|++
T Consensus       231 ~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999964

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=162.75  Aligned_cols=118  Identities=25%  Similarity=0.337  Sum_probs=110.3

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCC-hHHHHHHHhCC
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGA-TPLHYAVQVGA  212 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~-tpLh~A~~~g~  212 (295)
                      ..|+.|+..|+.+.++.|++.|++++.  .+..|+||||+|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~--~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNA--PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTC--CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCcccc--ccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            468999999999999999999998876  4889999999775 7999999999999999999998876 69999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI  254 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~  254 (295)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999974

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-23  Score=179.09  Aligned_cols=159  Identities=21%  Similarity=0.266  Sum_probs=142.2

Q ss_pred             hhcHHHHHHHHhcChHHHHHHHhcCCCCC-cccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHH
Q 022566          131 KYEEDLLKEVEQLLEPEEREILNQNATPN-LGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       131 ~~~~~l~~ai~~~~~~~~~~lL~~g~~~~-~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  209 (295)
                      .-..+|+.|+..+..+.++.|+..|+++. +...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR   87 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhc
Confidence            34678999999999999999999998866 45678899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCC-----------------------------------------------CCcccCCCCChHHHHHHH
Q 022566          210 VGAMQSVKLLIKYNV-----------------------------------------------DVNVADNEGWTPLHIAIQ  242 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga-----------------------------------------------~in~~d~~g~TpLh~A~~  242 (295)
                      .++.+++++|++.+.                                               +++.++..|+||||+|+.
T Consensus        88 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~  167 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI  167 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccc
Confidence            999999999976432                                               234567889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          243 SRNRDIAKVLLINGADKSR-KTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       243 ~g~~~iv~~Ll~~gad~~~-~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      .++.+++++|++++++++. .+..|.||||+|+..|+    .+++++|.+..
T Consensus       168 ~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~----~~~v~~Ll~~g  215 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA----ASVLELLLKAG  215 (255)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             ccccccccchhcccccccccccccccccccccccccH----HHHHHHHHHCC
Confidence            9999999999999999885 46789999999999997    99999998754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2e-22  Score=168.63  Aligned_cols=124  Identities=22%  Similarity=0.286  Sum_probs=112.2

Q ss_pred             chhcHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCCCccCCCCChHHHHHH
Q 022566          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGG-LDIDSVDKDGATPLHYAV  208 (295)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpLh~A~  208 (295)
                      ......+..++..+..+.+..++..+...+.  .+..|+||||+|+..|+.+++++|++.| .+++.+|..|+||||+|+
T Consensus       103 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~  180 (229)
T d1ixva_         103 NQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL  180 (229)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhhcccccc--cCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhc
Confidence            3445668888899999999999998887765  4888999999999999999999999987 688999999999999999


Q ss_pred             HhCCHHHHHHHHh-CCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 022566          209 QVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  258 (295)
Q Consensus       209 ~~g~~~~v~~Ll~-~ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad  258 (295)
                      ..|+.+++++|++ .|++++.+|..|+||||+|+   +.+++++|+++|+|
T Consensus       181 ~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             ccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            9999999999997 59999999999999999998   46899999999997

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2.2e-24  Score=163.60  Aligned_cols=107  Identities=25%  Similarity=0.314  Sum_probs=101.9

Q ss_pred             cHHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCC
Q 022566          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGA  212 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  212 (295)
                      +.+|+.|+..++.+.++.|++.|++++.  .+..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~--~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCC--CSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccc--ccccccccccccccccccccccccccccceeeecccccccchhhhhhcCc
Confidence            3579999999999999999999998876  48899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcccCCCCChHHHHHH
Q 022566          213 MQSVKLLIKYNVDVNVADNEGWTPLHIAI  241 (295)
Q Consensus       213 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~  241 (295)
                      .+++++|+++|++++.+|..|+||||+|.
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            99999999999999999999999999983

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.2e-22  Score=179.44  Aligned_cols=153  Identities=27%  Similarity=0.373  Sum_probs=133.5

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      .+|+.|+..|+.+.++.|+..|++++..  |..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH
Confidence            3789999999999999999999988764  88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCC---------------------------------CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 022566          214 QSVKLLIKYNVD---------------------------------VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  260 (295)
Q Consensus       214 ~~v~~Ll~~ga~---------------------------------in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~  260 (295)
                      +++++|+..+.+                                 .+..+..+.++|+.|+..++.+++++|+++|++++
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999888865433                                 23456677888888888888888888888888888


Q ss_pred             CCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          261 RKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       261 ~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      ..+..|.+||++|+..|+    .+++++|...
T Consensus       160 ~~~~~~~~~L~~A~~~~~----~~~~~~Ll~~  187 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNN----LDIVKLLLPR  187 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTC----HHHHHHHGGG
T ss_pred             cCCCcCchHHHHHHHcCC----HHHHHHHHhc
Confidence            888888888888888886    7888887653

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=4.4e-23  Score=159.04  Aligned_cols=121  Identities=18%  Similarity=0.196  Sum_probs=110.5

Q ss_pred             HHHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH
Q 022566          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM  213 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  213 (295)
                      ..|+.|+..++.+.++.|++.|++++..  +..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~--d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccc--ccccccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            3578999999999999999999998764  88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCcccCC-CCChHHHHH--HHcCCHHHHHHHHHcC
Q 022566          214 QSVKLLIKYNVDVNVADN-EGWTPLHIA--IQSRNRDIAKVLLING  256 (295)
Q Consensus       214 ~~v~~Ll~~ga~in~~d~-~g~TpLh~A--~~~g~~~iv~~Ll~~g  256 (295)
                      +++++|+++|++++..+. .|.||++++  +..|+.+++++|+..+
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999998775 588887765  5779999999998653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.7e-23  Score=181.49  Aligned_cols=111  Identities=26%  Similarity=0.230  Sum_probs=83.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCH-------HHHHH------------------
Q 022566          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAM-------QSVKL------------------  218 (295)
Q Consensus       164 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~-------~~v~~------------------  218 (295)
                      |..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..++.       .++++                  
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            67777888888888888888888888888887777788888877764431       22222                  


Q ss_pred             ------------------------HHhCCC-------------------------------------CCcccCCCCChHH
Q 022566          219 ------------------------LIKYNV-------------------------------------DVNVADNEGWTPL  237 (295)
Q Consensus       219 ------------------------Ll~~ga-------------------------------------~in~~d~~g~TpL  237 (295)
                                              ++..+.                                     .+|.+|..|+|||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpL  263 (301)
T d1sw6a_         184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  263 (301)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             HHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHH
Confidence                                    222111                                     1567788888999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 022566          238 HIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL  274 (295)
Q Consensus       238 h~A~~~g~~~iv~~Ll~~gad~~~~d~~g~TpL~~A~  274 (295)
                      |+|++.|+.++|++|+++||+++.+|..|.|||++|+
T Consensus       264 h~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         264 NIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            9999999999999999889999988888999988875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.6e-22  Score=169.03  Aligned_cols=155  Identities=26%  Similarity=0.288  Sum_probs=130.3

Q ss_pred             HHHHHHHHhcChHHH----HHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHH
Q 022566          134 EDLLKEVEQLLEPEE----REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQ  209 (295)
Q Consensus       134 ~~l~~ai~~~~~~~~----~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  209 (295)
                      .+|+.|+..+..+.+    +.+...+.++|.  .|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus         4 t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~--~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~   81 (221)
T d1iknd_           4 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNF--QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE   81 (221)
T ss_dssp             CTTHHHHHTTCSSSSSCCCC-----CCCCCC--CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCCCCccc--CCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            346777777775443    344456666665  48899999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHhCCCCC------cccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCCh
Q 022566          210 VGAMQSVKLLIKYNVDV------NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKS  282 (295)
Q Consensus       210 ~g~~~~v~~Ll~~ga~i------n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d-~~g~TpL~~A~~~g~~~~~  282 (295)
                      .++.++++.|+..+...      ......|.||||+|+..++.+++++|+..|+.++..+ .+|.||||+|+..|+    
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~----  157 (221)
T d1iknd_          82 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN----  157 (221)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----
T ss_pred             cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc----
Confidence            99999999999987653      3345578999999999999999999999999998766 579999999999997    


Q ss_pred             HHHHHHhhhcCC
Q 022566          283 YDLAKLLKILPV  294 (295)
Q Consensus       283 ~~iv~~L~~lp~  294 (295)
                      .+++++|.+..+
T Consensus       158 ~~~v~~Ll~~ga  169 (221)
T d1iknd_         158 PDLVSLLLKCGA  169 (221)
T ss_dssp             HHHHHHHHTTTC
T ss_pred             HHHHHHHHhcCC
Confidence            999999987643

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=5e-23  Score=176.78  Aligned_cols=126  Identities=25%  Similarity=0.338  Sum_probs=106.4

Q ss_pred             CCCChHHHHHHHcCCHHHHHHH--------HhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChH
Q 022566          165 TAKWRPLQTLTLSMQIRYMDML--------LDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP  236 (295)
Q Consensus       165 ~~g~t~Lh~A~~~g~~~~v~~L--------l~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~Tp  236 (295)
                      ..|+||||+||..|+.++|++|        ++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            4699999999999999887766        57899999999999999999999999999999999999998777777776


Q ss_pred             HHHHHHcC------------------------------------------------------------------------
Q 022566          237 LHIAIQSR------------------------------------------------------------------------  244 (295)
Q Consensus       237 Lh~A~~~g------------------------------------------------------------------------  244 (295)
                      |++|+..+                                                                        
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            66666554                                                                        


Q ss_pred             --------CHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          245 --------NRDIAKVLL-INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       245 --------~~~iv~~Ll-~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                              +.+++++++ ..+.+++.+|..|.||||+|+..|+    .+++++|.+..+
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~----~~iv~~Ll~~ga  245 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR----IEVVMYLIQQGA  245 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC----HHHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCC----HHHHHHHHHCcC
Confidence                    344444433 5678888899999999999999997    899999987654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-22  Score=158.05  Aligned_cols=120  Identities=18%  Similarity=0.258  Sum_probs=114.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHH
Q 022566          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  248 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~i  248 (295)
                      ++||+||..|++++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++.++..|.+||+.++..++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcC
Q 022566          249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  293 (295)
Q Consensus       249 v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp  293 (295)
                      +++|+.++.+++..+..|.+||++|+..++    .+++++|.+.+
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~  122 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGH----LRVVEFLVKHT  122 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHS
T ss_pred             cccccccccccccccccccccccccccccc----ccccccccccc
Confidence            999999999999999999999999999997    89999886544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=5.6e-24  Score=190.57  Aligned_cols=122  Identities=8%  Similarity=0.055  Sum_probs=89.0

Q ss_pred             cHHHHHHHHhcChHHHHH---HHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccC--CCCChHHHHH
Q 022566          133 EEDLLKEVEQLLEPEERE---ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD--KDGATPLHYA  207 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~---lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d--~~g~tpLh~A  207 (295)
                      ...++.|+..|..+.++.   |+..|++++.  ++..|+||||+||..|+.++|++|++.|++++..+  ..|+||||+|
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~--~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKV--IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcccc--cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            456777888887665543   5666766665  47778888888888888888888888888887765  3478888888


Q ss_pred             HHhCCHHHHHHHHhCCCCC---cccCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 022566          208 VQVGAMQSVKLLIKYNVDV---NVADNEGWTPLHIAIQSRNRDIAKVLLING  256 (295)
Q Consensus       208 ~~~g~~~~v~~Ll~~ga~i---n~~d~~g~TpLh~A~~~g~~~iv~~Ll~~g  256 (295)
                      +..|+.++|++|++.|++.   +..+..|.||+|.|+..|+.+++++|+++|
T Consensus       169 a~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            8888888888888887654   333455667777777888888888876554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.7e-21  Score=158.05  Aligned_cols=125  Identities=23%  Similarity=0.303  Sum_probs=113.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHh----CCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcc-------------
Q 022566          166 AKWRPLQTLTLSMQIRYMDMLLD----GGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNV-------------  228 (295)
Q Consensus       166 ~g~t~Lh~A~~~g~~~~v~~Ll~----~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~-------------  228 (295)
                      +|+||||+||..|+.++++.|++    .|++++.+|..|+||||+|+..|+.+++++|+++|++++.             
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            58999999999999999998874    8999999999999999999999999999999999886542             


Q ss_pred             ----------------------------------------------------------cCCCCChHHHHHHHcCCHHHHH
Q 022566          229 ----------------------------------------------------------ADNEGWTPLHIAIQSRNRDIAK  250 (295)
Q Consensus       229 ----------------------------------------------------------~d~~g~TpLh~A~~~g~~~iv~  250 (295)
                                                                                ....|.+||+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                                      2235678999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          251 VLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       251 ~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      .++++|.+++.+|..|.||||+|+..|+    .+++++|.+..+
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~Ga  201 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGL----LPLVRTLVRSGA  201 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHHHHTTC
T ss_pred             hhhhhccccccccccCcchHHHHHHcCC----HHHHHHHHHCCC
Confidence            9999999999999999999999999997    899999987654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.6e-21  Score=153.16  Aligned_cols=118  Identities=23%  Similarity=0.290  Sum_probs=111.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHH
Q 022566          169 RPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD  247 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~  247 (295)
                      +.||.||..|+.++|+.|++. +++++.+|..|+||||+|+ .|+.+++++|++.+++++..+..|.+|+++++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            469999999999999999985 8899999999999999987 58899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhh
Q 022566          248 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  291 (295)
Q Consensus       248 iv~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~  291 (295)
                      ++++++++|++++.+|..|.||||+|+..|+    .+++++|..
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~----~~i~~~L~~  122 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGH----TAVVSFLAA  122 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC----HHHHHHHHT
T ss_pred             ccccccccccccccccCCCCeeecccccccc----ccccccccc
Confidence            9999999999999999999999999999997    899999853

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=2e-23  Score=186.93  Aligned_cols=126  Identities=10%  Similarity=0.040  Sum_probs=109.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHH---HHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccC--CCCChHH
Q 022566          163 ISTAKWRPLQTLTLSMQIRYMDM---LLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD--NEGWTPL  237 (295)
Q Consensus       163 ~d~~g~t~Lh~A~~~g~~~~v~~---Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d--~~g~TpL  237 (295)
                      .+..|.||||+||..|+.+++++   |++.|++++.++..|+||||+||..|+.++|++|++.|++++..+  ..|+|||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            46788999999999999877665   789999999999999999999999999999999999999998876  4699999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhc
Q 022566          238 HIAIQSRNRDIAKVLLINGADK---SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  292 (295)
Q Consensus       238 h~A~~~g~~~iv~~Ll~~gad~---~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~l  292 (295)
                      |+|+..|+.++|++|+++|++.   +..+..|.||++.|+.+|+    .+|+++|.+.
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~----~~iv~~Ll~~  219 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH----HNVINFLLDC  219 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC----HHHHHHHTTS
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCH----HHHHHHHHhC
Confidence            9999999999999999999875   3344567888899999998    9999999764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.4e-20  Score=147.72  Aligned_cols=121  Identities=26%  Similarity=0.332  Sum_probs=115.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHH
Q 022566          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  248 (295)
Q Consensus       169 t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~i  248 (295)
                      ||||.||+.|+.++|++|+++|++++ .+..|+||||+|+..++.++++.++.........+..+.++++.++...+.++
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            89999999999999999999999887 68999999999999999999999999988888888899999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          249 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       249 v~~Ll~~gad~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                      +++|+.+|++++.++..|.||||+|+..|+    .+++++|.+..+
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~----~~iv~~ll~~ga  124 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNH----QEVVELLIKYGA  124 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             eecccccCCccccccccCchHHHhhhhcch----hheeeecccccc
Confidence            999999999999999999999999999997    999999988754

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-19  Score=156.17  Aligned_cols=130  Identities=25%  Similarity=0.312  Sum_probs=114.5

Q ss_pred             cHHHHHHHHhcChHHHHHHHhc-CCCCCcccCCCCCChHHHHHHHcC----CHHHHHHHHhCCCCCCccCCCCChHHHHH
Q 022566          133 EEDLLKEVEQLLEPEEREILNQ-NATPNLGKISTAKWRPLQTLTLSM----QIRYMDMLLDGGLDIDSVDKDGATPLHYA  207 (295)
Q Consensus       133 ~~~l~~ai~~~~~~~~~~lL~~-g~~~~~~~~d~~g~t~Lh~A~~~g----~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A  207 (295)
                      ..+|+.|+..+..+.++.|+.. |++++  ..+..|.++++.+...+    ...++++|+++|++++.++..|.||||+|
T Consensus       149 ~t~L~~A~~~~~~~~~~~Ll~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         149 ATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  226 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHhccCCCcc--cccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchh
Confidence            3468899999999999999975 55554  45778888777665433    35799999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHhC-CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 022566          208 VQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK  264 (295)
Q Consensus       208 ~~~g~~~~v~~Ll~~-ga~in~~d~~g~TpLh~A~~~g~~~iv~~Ll~~gad~~~~d~  264 (295)
                      +..|+.+++++|++. |++++.+|..|.||||+|++.|+.+++++|+++||+++++|.
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999999985 999999999999999999999999999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=7.3e-19  Score=144.53  Aligned_cols=116  Identities=19%  Similarity=0.258  Sum_probs=104.5

Q ss_pred             HHHHHHHhcChHHHHHHHhcCCCCCcccCCCCCChHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCChHHHHHHHhCCHH
Q 022566          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGATPLHYAVQVGAMQ  214 (295)
Q Consensus       135 ~l~~ai~~~~~~~~~~lL~~g~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~  214 (295)
                      ....+...........++..+.+++.  .+..|+|||++++..+...+++.++..+.+++..|..|.||||+|+..|+.+
T Consensus        93 ~~~~~~~~~~~~~~~~L~~~~~~~~~--~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_          93 PLILAARLAIEGMVEDLITADADINA--ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE  170 (209)
T ss_dssp             HHHHHHHTTCTTHHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhhhhhcccccc--cCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHH
Confidence            34455556666667777777777665  4888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 022566          215 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL  252 (295)
Q Consensus       215 ~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~iv~~L  252 (295)
                      ++++|+++|++++.+|..|+||||+|++.|+.+||++|
T Consensus       171 ~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         171 ASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999999999999999987

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.8e-17  Score=144.70  Aligned_cols=109  Identities=23%  Similarity=0.313  Sum_probs=87.8

Q ss_pred             HHHHHHhCCCCCCcc-CCCCChHHHHHHHhCCHHHHHHHHhCCCCCcccCCCCChHHHHHHHcCCH-------HHHHHH-
Q 022566          182 YMDMLLDGGLDIDSV-DKDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR-------DIAKVL-  252 (295)
Q Consensus       182 ~v~~Ll~~g~d~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~-------~iv~~L-  252 (295)
                      +...+...+.++|.. |..|+||||+||..|+.++|++|+++|++++.+|..|+||||.||..++.       +++++| 
T Consensus        88 ~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_          88 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             HHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            333333467888865 89999999999999999999999999999999999999999999976541       233322 


Q ss_pred             -----------------------------------------HHcCC----------------------------------
Q 022566          253 -----------------------------------------LINGA----------------------------------  257 (295)
Q Consensus       253 -----------------------------------------l~~ga----------------------------------  257 (295)
                                                               +..+.                                  
T Consensus       168 ~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (301)
T d1sw6a_         168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  247 (301)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHH
Confidence                                                     12211                                  


Q ss_pred             ---CCCCCCCCCCCHHHHHHhcCCCCChHHHHHHhhhcCC
Q 022566          258 ---DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  294 (295)
Q Consensus       258 ---d~~~~d~~g~TpL~~A~~~g~~~~~~~iv~~L~~lp~  294 (295)
                         .+|.+|.+|+||||+|++.|+    .+|+++|.+..+
T Consensus       248 ~~~~in~~D~~G~TpLh~A~~~g~----~~iv~~Ll~~GA  283 (301)
T d1sw6a_         248 IANMLNAQDSNGDTCLNIAARLGN----ISIVDALLDYGA  283 (301)
T ss_dssp             HHHTTTCCCTTSCCHHHHHHHHCC----HHHHHHHHHTTC
T ss_pred             HhcCccCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCC
Confidence               168889999999999999998    999999988765