Citrus Sinensis ID: 022608

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFIVPYH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHccccccEcccccccEEEEccc
Coil and Loop (DISEMBL)
mienmeekgsnshvkrqkggmitmpfifSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAntltnfggtgsltpLIGAFVADAYAGRFWTITIASIIYQIGMICLTIsailpqlrpppcegeqvcqEANKGQVAILYVSLLLAALgsggirpcvvafgadqfdetdpkqatkTWKYFNWYYFVMGAAILVAVTVLVYIQdnigwgwglgipTFAMFLSIIAFLIgyplyrnldpagspfTRLLQVCVAAFRKrkltmvtdpkllyenEELDAAISLGGKLLHTKHMNFIVPYH
Flexible Loop (DISEMBL)
mienmeekgsnshvkrqkggMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGadqfdetdpkQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKltmvtdpkllyeNEELDAAISLGGKLLHTKHMNFIVPYH
Low Complexity Region (SEG)
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVslllaalgsggIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFIVPYH
Disordered region (IsUnstruct)
*******************GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFIVP**
Disordered Region (DISOPRED)
***N***************GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPP************KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDET*****TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYE***************HTKHMNFIVPYH
Disordered Region (DISEMBL)
***************RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFIVPYH
Disordered Region (DISPRO)
****MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFIVPYH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFIVPYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9SX20	596	Probable nitrite transpor	yes	no	0.969	0.478	0.768	1e-125
Q9LFB8	570	Peptide transporter PTR5	no	no	0.952	0.491	0.475	1e-71
Q9M390	570	Peptide transporter PTR1	no	no	0.942	0.485	0.462	4e-70
P46032	585	Peptide transporter PTR2	no	no	0.948	0.476	0.475	5e-70
Q93Z20	590	Probable peptide/nitrate	no	no	0.982	0.489	0.449	8e-67
Q84WG0	545	Probable peptide/nitrate	no	no	0.850	0.458	0.474	2e-61
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.952	0.477	0.400	1e-57
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.870	0.439	0.417	5e-56
Q8LPL2	591	Probable peptide/nitrate	no	no	0.829	0.412	0.449	2e-55
Q9M817	607	Probable peptide transpor	no	no	0.829	0.401	0.431	6e-55

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/285 (76%), Positives = 251/285 (88%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
           EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 66  NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
           NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
           C  A+  Q++ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct: 132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query: 186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
           GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct: 192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query: 246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM+F+
Sbjct: 252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFL 296

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  269 bits (688), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 136/286 (47%), Positives = 187/286 (65%), Gaps = 6/286 (2%)

Query: 4   NMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANT 63
           ++ +K +N   K + G      FI   E CE+LA  G +TN+I+YL  Q++M    A+ +
Sbjct: 15  DIHKKPAN---KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKS 71

Query: 64  LTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE 123
           ++N+ GT   TPLIGAF+ADAY GR+WTI    +IY  GM  LTISA +P L  P C GE
Sbjct: 72  VSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGE 130

Query: 124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF 183
             C  A  GQ AI +++L L ALG+GGI+PCV +FGADQFD+TD K+      +FNW+YF
Sbjct: 131 -TCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query: 184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRL 243
           V+    ++A +VLV+IQ N+GWGWGLG+PT AM ++++ F  G   YR   P GSP TR+
Sbjct: 189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRM 248

Query: 244 LQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNF 289
           LQV VA+ RK K+ +  D  LLYEN++ +++I    KL HTK + F
Sbjct: 249 LQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTF 294

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  264 bits (675), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 129/279 (46%), Positives = 174/279 (62%), Gaps = 2/279 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N   K + G      FI  NE CE+LA  G  TN+++YL ++L+     AAN +TN+ GT
Sbjct: 18  NPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGT 77

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             +TPLIGAF+ADAY GR+WTI     IY  GM  LT+SA +P L+P  C  +  C   N
Sbjct: 78  CYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD-TCH-PN 135

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q A+ +V+L + ALG+GGI+PCV +FGADQFDE D  +  K   +FNW+YF +    L
Sbjct: 136 SSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGAL 195

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           +A TVLV+IQ N+GWGWG G+PT AM +++  F  G   YR   P GSP TR+ QV VAA
Sbjct: 196 IAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAA 255

Query: 251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNF 289
           FRK  + +  D  LL+E  + ++ I    KL+HT ++ F
Sbjct: 256 FRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKF 294

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  264 bits (675), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/280 (47%), Positives = 178/280 (63%), Gaps = 1/280 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N  +K + G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T + GT
Sbjct: 35  NPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGT 94

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             LTPLIGA +ADAY GR+WTI   S IY IGM  LT+SA +P L+P  C G+  C  A 
Sbjct: 95  CYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSAT 153

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q A+ +  L L ALG+GGI+PCV +FGADQFD+TD ++  +   +FNW+YF +    L
Sbjct: 154 PAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGAL 213

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           V+ ++LV+IQ+N GWG G GIPT  M L+I +F  G PLYR   P GSP TR+ QV VA+
Sbjct: 214 VSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVAS 273

Query: 251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           FRK  + +  D  LLYE ++ ++AI+   K+ HT    ++
Sbjct: 274 FRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYL 313

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  253 bits (647), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/296 (44%), Positives = 181/296 (61%), Gaps = 7/296 (2%)

Query: 2   IENMEEKGS-----NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP 56
           + +  E GS     N   K++ G     PFI  NE CE+LA  G   N+I+Y T++LH  
Sbjct: 32  LSSTAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHES 91

Query: 57  LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR 116
              AA+ +  + GT  +TPLIGA +AD+Y GR+WTI   S IY IGM  LT+SA LP L+
Sbjct: 92  NVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLK 151

Query: 117 PPPCEGEQ--VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT 174
           P  C G    +C  A   Q A+ +  L L ALG+GGI+PCV +FGADQFD+TDP++  + 
Sbjct: 152 PAACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRK 211

Query: 175 WKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLD 234
             +FNW+YF +     ++ T+LV++Q+N+GWG G  IPT  M +SI +F IG PLYR   
Sbjct: 212 ASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQK 271

Query: 235 PAGSPFTRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           P GSP TR+ QV VAA+RK KL +  D   LYE  E ++ I+   K+ HT    F+
Sbjct: 272 PGGSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFL 327

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 119/251 (47%), Positives = 156/251 (62%), Gaps = 1/251 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N  +K+  G     PFIF+NE CE+LA  G   N+I+Y T +LH     AA  +  + GT
Sbjct: 36  NPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGT 95

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
             +TPLIGA +ADAY GR+WTI   S IY  GM+ LT+SA +P L+P  C G  +C  A 
Sbjct: 96  CYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIG-SLCPPAT 154

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q  +L+  L L ALG+GGI+PCV +FGADQFD+TDP +  +   +FNW+YF +     
Sbjct: 155 MVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAF 214

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           V+ TVLV+IQ+N GW  G  IPT  M L+ ++F  G PLYR   P GSP T + QV VAA
Sbjct: 215 VSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAA 274

Query: 251 FRKRKLTMVTD 261
           +RK  L +  D
Sbjct: 275 YRKSNLKVPED 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/282 (40%), Positives = 167/282 (59%), Gaps = 2/282 (0%)

Query: 11  NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
           N   + Q G      F+   EV E++A  G ++N++ Y+TT+LH    K++N +TN+ GT
Sbjct: 21  NRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGT 80

Query: 71  GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQE 128
             LTP++GA+VADA+ GR+ T  I+S IY +GM  LT+S  LP L+PP C    V  C++
Sbjct: 81  SWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEK 140

Query: 129 ANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
           A+  Q+A+ + +L   A+G+GG +P +   GADQFDE DPK       +FNW+ F +   
Sbjct: 141 ASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFG 200

Query: 189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
              A TVLVY+QDN+GW  G G+ T  +  SI  FL+G  LYR+  P GSPFT++ +V V
Sbjct: 201 TFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIV 260

Query: 249 AAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           A+ RK +  M +D    YE   ++ A      +  T  + F+
Sbjct: 261 ASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFL 302

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  218 bits (555), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 111/266 (41%), Positives = 163/266 (61%), Gaps = 10/266 (3%)

Query: 14  VKRQ-KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGS 72
           V+R  +G      F+   EV E++A  G ++N+  Y+TT+LH    K++N +TN+ GT  
Sbjct: 23  VRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSW 82

Query: 73  LTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQEAN 130
           LTP++GA+V DA  GR+ T  I+  IY  GM+ LT+S  +P ++PP C    V  C++A+
Sbjct: 83  LTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKAS 142

Query: 131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
             Q+A+ + +L   A+G+GG +P +   GADQFD  DPK+ T+   +FNW+ F +    L
Sbjct: 143 VLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTL 202

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
            A TVLVY+QDN+GW  G G+PT  + +SI  FL+G P YR+  P GSPFT++ +V VA+
Sbjct: 203 FANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVAS 262

Query: 251 FRKRKLTMVTD-------PKLLYENE 269
           FRK    M  D       P L YE +
Sbjct: 263 FRKANAPMTHDITSFHELPSLEYERK 288

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 111/247 (44%), Positives = 151/247 (61%), Gaps = 3/247 (1%)

Query: 15  KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
           +R KGG++TMPFI +NE  EK+A  G   NMI YL +   + L K    L  +    +  
Sbjct: 21  RRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVAATNFM 80

Query: 75  PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC--EGEQVCQEANKG 132
           PL+GAF++D+Y GRF TI IAS+   +GM+ L ++A+LPQ++P PC       C  A   
Sbjct: 81  PLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCSSATSS 140

Query: 133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAILV 191
           Q+A+LY +  L ++GSGGIRPC +AFGADQ D + +PK       +F WYY     A+L+
Sbjct: 141 QLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSSVAVLI 200

Query: 192 AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAF 251
           A TV+VYIQD++GW  G GIP   M L+   F+   PLY   D + S FT L QV  AA+
Sbjct: 201 AFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQVVAAAY 260

Query: 252 RKRKLTM 258
            KR LT+
Sbjct: 261 VKRNLTL 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1

 Score =  214 bits (545), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 107/248 (43%), Positives = 154/248 (62%), Gaps = 4/248 (1%)

Query: 15  KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
           K+ KGG+ITMPFI +NE  EK+A  G   NMI YL       + K  N L  +    + T
Sbjct: 19  KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query: 75  PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV---CQEANK 131
           PL+GAF++D+Y GRF TI+IAS+   +GM+ L ++A+LPQ++P PC+       C  +  
Sbjct: 79  PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query: 132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFD-ETDPKQATKTWKYFNWYYFVMGAAIL 190
            Q+A+LY +  L ++GSGGIRPC +AFGADQ D + +PK       +F WYY     A+L
Sbjct: 139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query: 191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
           +A T +VYIQ+++GW  G G+P   M ++ + F++  PLY       S FT L Q  VAA
Sbjct: 199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query: 251 FRKRKLTM 258
           ++KRKL++
Sbjct: 259 YKKRKLSL 266

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
255576453	286	nitrate transporter, putative [Ricinus c	0.969	0.996	0.822	1e-135
297737830	795	unnamed protein product [Vitis vinifera]	0.965	0.357	0.783	1e-135
359472693	672	PREDICTED: probable nitrite transporter	0.965	0.422	0.783	1e-134
357488469	584	Peptide transporter PTR [Medicago trunca	0.972	0.489	0.767	1e-132
356495939	576	PREDICTED: probable nitrite transporter	0.965	0.493	0.797	1e-132
449465908	584	PREDICTED: probable nitrite transporter	0.972	0.489	0.720	1e-127
449514761	575	PREDICTED: probable nitrite transporter	0.942	0.481	0.732	1e-125
356498272	576	PREDICTED: probable nitrite transporter	0.935	0.477	0.778	1e-124
15221439	596	putative nitrite transporter [Arabidopsi	0.969	0.478	0.768	1e-123
297838617	597	proton-dependent oligopeptide transport	0.969	0.477	0.769	1e-122

>gi|255576453|ref|XP_002529118.1| nitrate transporter, putative [Ricinus communis] gi|223531397|gb|EEF33231.1| nitrate transporter, putative [Ricinus communis]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/288 (82%), Positives = 268/288 (93%), Gaps = 3/288 (1%)

Query: 2   IENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAA 61
           +E MEEKG ++  K QKGGMITMPFIF+NE CEKLAVVGFNTNMISYLTTQLH+PLTKAA
Sbjct: 1   MEKMEEKGFDA--KGQKGGMITMPFIFANEACEKLAVVGFNTNMISYLTTQLHLPLTKAA 58

Query: 62  NTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE 121
           NTLTNF GT SLTPL+GAF+AD+YAGRFWTIT+ASIIYQ+GM  LT+SA+LP LRPPPC+
Sbjct: 59  NTLTNFSGTSSLTPLLGAFLADSYAGRFWTITVASIIYQLGMTSLTLSAVLPNLRPPPCK 118

Query: 122 -GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180
            G++VCQEA+ GQ+AILYVSLLL ALGSGGIRPCVVAFGADQFDETDPKQ TKTW+YFNW
Sbjct: 119 LGDEVCQEADAGQLAILYVSLLLGALGSGGIRPCVVAFGADQFDETDPKQTTKTWRYFNW 178

Query: 181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPF 240
           YYFVMG +IL+AVTVLVY+QDNIGWGWGLGIPT AMFLSIIAF++GYPLYRNLDPAGSPF
Sbjct: 179 YYFVMGVSILLAVTVLVYVQDNIGWGWGLGIPTIAMFLSIIAFIVGYPLYRNLDPAGSPF 238

Query: 241 TRLLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMN 288
           TRLLQVCVAAF+KRKL++V+DPKLLY+N+ELDA IS+GG L+HTKHM 
Sbjct: 239 TRLLQVCVAAFKKRKLSVVSDPKLLYQNDELDAPISIGGNLVHTKHMK 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737830|emb|CBI27031.3| unnamed protein product [Vitis vinifera]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/287 (78%), Positives = 257/287 (89%), Gaps = 3/287 (1%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+KGS  H  R KGG+ITMPFIF+NE CEKLAVVGF+ NMI+YLT QLH+PLTKAANT+
Sbjct: 1   MEKKGS--HGGRTKGGLITMPFIFANEACEKLAVVGFSANMITYLTQQLHLPLTKAANTI 58

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE- 123
           TNF GT SLTPL+GAF++DAYAGRFWTIT+ASI++Q+GM  LT+SA+LPQLRPPPC+GE 
Sbjct: 59  TNFSGTASLTPLLGAFISDAYAGRFWTITVASILWQMGMTSLTLSAVLPQLRPPPCKGEH 118

Query: 124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF 183
           QVCQEA+ GQ+AILY SLLL ALG+GGIRPCVVAFGADQFDETDPK+ TKTW +FNWYYF
Sbjct: 119 QVCQEADGGQLAILYGSLLLTALGAGGIRPCVVAFGADQFDETDPKEKTKTWNFFNWYYF 178

Query: 184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRL 243
           VMGA+ILVAVTVLVYIQDN+GWGWGLGIPT AMFLSII F++GYPLYRNLDP GSPFTRL
Sbjct: 179 VMGASILVAVTVLVYIQDNVGWGWGLGIPTTAMFLSIITFVVGYPLYRNLDPVGSPFTRL 238

Query: 244 LQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           LQVCVAA +KR L MV+DP LLYEN+ELDA+IS  GKLLHT  + F+
Sbjct: 239 LQVCVAASKKRNLRMVSDPNLLYENDELDASISAAGKLLHTNELKFL 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472693|ref|XP_002282337.2| PREDICTED: probable nitrite transporter At1g68570 [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 225/287 (78%), Positives = 257/287 (89%), Gaps = 3/287 (1%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+KGS  H  R KGG+ITMPFIF+NE CEKLAVVGF+ NMI+YLT QLH+PLTKAANT+
Sbjct: 93  MEKKGS--HGGRTKGGLITMPFIFANEACEKLAVVGFSANMITYLTQQLHLPLTKAANTI 150

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE- 123
           TNF GT SLTPL+GAF++DAYAGRFWTIT+ASI++Q+GM  LT+SA+LPQLRPPPC+GE 
Sbjct: 151 TNFSGTASLTPLLGAFISDAYAGRFWTITVASILWQMGMTSLTLSAVLPQLRPPPCKGEH 210

Query: 124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF 183
           QVCQEA+ GQ+AILY SLLL ALG+GGIRPCVVAFGADQFDETDPK+ TKTW +FNWYYF
Sbjct: 211 QVCQEADGGQLAILYGSLLLTALGAGGIRPCVVAFGADQFDETDPKEKTKTWNFFNWYYF 270

Query: 184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRL 243
           VMGA+ILVAVTVLVYIQDN+GWGWGLGIPT AMFLSII F++GYPLYRNLDP GSPFTRL
Sbjct: 271 VMGASILVAVTVLVYIQDNVGWGWGLGIPTTAMFLSIITFVVGYPLYRNLDPVGSPFTRL 330

Query: 244 LQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           LQVCVAA +KR L MV+DP LLYEN+ELDA+IS  GKLLHT  + F+
Sbjct: 331 LQVCVAASKKRNLRMVSDPNLLYENDELDASISAAGKLLHTNELKFL 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488469|ref|XP_003614522.1| Peptide transporter PTR [Medicago truncatula] gi|355515857|gb|AES97480.1| Peptide transporter PTR [Medicago truncatula]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 221/288 (76%), Positives = 259/288 (89%), Gaps = 2/288 (0%)

Query: 3   ENMEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAN 62
           E ME+ G+ +  +R+KGG+ TMPFIF+NEV EKLAVVGFN NMISYLTTQLHMPLTKAAN
Sbjct: 6   EKMEKNGNLT--RRKKGGLATMPFIFANEVTEKLAVVGFNANMISYLTTQLHMPLTKAAN 63

Query: 63  TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG 122
           TLTNFGGT SLTPL+GAF++D++AG+F TIT+ASIIYQIGMI LT+SA+LPQLRPPPC+G
Sbjct: 64  TLTNFGGTSSLTPLLGAFISDSFAGKFMTITVASIIYQIGMISLTMSAVLPQLRPPPCKG 123

Query: 123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY 182
           E+VCQEA+  Q+AILYVSLLL+ALGSGGIRPCVVAFGADQFDE+DP Q T+TW YFNWYY
Sbjct: 124 EEVCQEASSRQLAILYVSLLLSALGSGGIRPCVVAFGADQFDESDPNQKTRTWTYFNWYY 183

Query: 183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTR 242
           FVMG AILVAVTVLVYIQDN+GWGWGLGIPT AMF+SIIAF+ GYPLYRNL+P GSPFTR
Sbjct: 184 FVMGTAILVAVTVLVYIQDNVGWGWGLGIPTLAMFISIIAFIGGYPLYRNLNPEGSPFTR 243

Query: 243 LLQVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           L++V VAAFRKRK+  V +  LLY+N+ELDA+I+LGGKLLH+  + F+
Sbjct: 244 LVKVGVAAFRKRKIPKVPNSTLLYQNDELDASITLGGKLLHSDQLKFL 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495939|ref|XP_003516828.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/286 (79%), Positives = 263/286 (91%), Gaps = 2/286 (0%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME+K   +H +R+KGG+ITMPFIF NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL
Sbjct: 1   MEQK--ENHARRKKGGLITMPFIFGNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 58

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNFGGT SLTPL+GAF+AD+YAG+FWT+T+ASIIYQIGMI LT+SA+LPQ RPPPC+GE+
Sbjct: 59  TNFGGTASLTPLLGAFIADSYAGKFWTVTLASIIYQIGMISLTLSAVLPQFRPPPCKGEE 118

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           VCQ+A+ GQ+AILY+SLLL ALGSGGIRPC+VAFGADQFDE+DPKQ T+TW YFNWYYFV
Sbjct: 119 VCQQASAGQLAILYISLLLGALGSGGIRPCIVAFGADQFDESDPKQTTRTWTYFNWYYFV 178

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MG AILVAVTVLVYIQDNIGWG GLGIPT AMFLSIIAF++GYPLYRNL+P+GSPFTRL+
Sbjct: 179 MGVAILVAVTVLVYIQDNIGWGIGLGIPTIAMFLSIIAFIVGYPLYRNLNPSGSPFTRLV 238

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           QV VAAFRKRK+  V+ P LLY+N+ELDA+IS+GGKLLH+  M F+
Sbjct: 239 QVAVAAFRKRKVPNVSHPSLLYQNDELDASISMGGKLLHSGQMKFL 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465908|ref|XP_004150669.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 206/286 (72%), Positives = 249/286 (87%)

Query: 5   MEEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           ME +    H++R+KGG+ITMPFIF+NE+CEK+AVVGFNTNMISYLT QLHMP TKAANT+
Sbjct: 1   MEMEKKEKHMERKKGGLITMPFIFANEICEKIAVVGFNTNMISYLTKQLHMPSTKAANTI 60

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNF GT SLTPLIGAF+AD+Y GRFWTIT+ASI+YQIGM+ LT SA++P LRPPPC+  +
Sbjct: 61  TNFSGTASLTPLIGAFIADSYVGRFWTITVASILYQIGMVSLTTSAVVPGLRPPPCKAGE 120

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           +C+EA  GQ+ ILYVSLLL ALGSGGIRPCVV+FGADQF+E DPK+ TKT+KYFNWYYF 
Sbjct: 121 ICKEATGGQLGILYVSLLLTALGSGGIRPCVVSFGADQFEEGDPKRGTKTYKYFNWYYFA 180

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MGA++LVAVTVLVY+QDNIGWGWG GIPT AM +SII F++GYP+YR+LDP+GSPFTRLL
Sbjct: 181 MGASMLVAVTVLVYVQDNIGWGWGFGIPTIAMLVSIITFVVGYPIYRHLDPSGSPFTRLL 240

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           QV VAA++KRK+ +V+D  LLY+N ++D  IS  G LLHTKHM F+
Sbjct: 241 QVGVAAYKKRKVCIVSDSNLLYQNRDIDDPISRDGNLLHTKHMRFL 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449514761|ref|XP_004164473.1| PREDICTED: probable nitrite transporter At1g68570-like [Cucumis sativus]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 203/277 (73%), Positives = 245/277 (88%)

Query: 14  VKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSL 73
           ++R+KGG+ITMPFIF+NE+CEK+AVVGFNTNMISYLT QLHMP TKAANT+TNF GT SL
Sbjct: 1   MERKKGGLITMPFIFANEICEKIAVVGFNTNMISYLTKQLHMPSTKAANTITNFSGTASL 60

Query: 74  TPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ 133
           TPLIGAF+AD+Y GRFWTIT+ASI+YQIGM+ LT SA++P LRPPPC+  ++C+EA  GQ
Sbjct: 61  TPLIGAFIADSYVGRFWTITVASILYQIGMVSLTTSAVVPGLRPPPCKAGEICKEATGGQ 120

Query: 134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV 193
           + ILYVSLLL ALGSGGIRPCVV+FGADQF+E DPK+ TKT+KYFNWYYF MGA++LVAV
Sbjct: 121 LGILYVSLLLTALGSGGIRPCVVSFGADQFEEGDPKRGTKTYKYFNWYYFAMGASMLVAV 180

Query: 194 TVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRK 253
           TVLVY+QDNIGWGWG GIPT AM +SII F++GYP+YR+LDP+GSPFTRLLQV VAA++K
Sbjct: 181 TVLVYVQDNIGWGWGFGIPTIAMLVSIITFVVGYPIYRHLDPSGSPFTRLLQVGVAAYKK 240

Query: 254 RKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           RK+ +V+D  LLY+N ++D  IS  G LLHTKHM F+
Sbjct: 241 RKVCIVSDSNLLYQNRDIDDPISRDGNLLHTKHMRFL 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498272|ref|XP_003517977.1| PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/275 (77%), Positives = 251/275 (91%)

Query: 16  RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTP 75
           R+KGG+ITMPFIF+NEVCEKLAVVGFNTNM SYLTTQLHMPLTKAANTLTNFGGT SLTP
Sbjct: 10  RKKGGLITMPFIFANEVCEKLAVVGFNTNMNSYLTTQLHMPLTKAANTLTNFGGTASLTP 69

Query: 76  LIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVA 135
           L+GAF+AD+YAG+FWT+T+ASI+YQIGMI LT+SA+LPQ RPPPC+GE+VC++A+ GQ+A
Sbjct: 70  LLGAFIADSYAGKFWTVTVASILYQIGMISLTLSAVLPQFRPPPCKGEEVCRQASAGQLA 129

Query: 136 ILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV 195
           +LY+SLLL ALGSGGIRPC+VAFGADQF E+DPKQ TKTW YFNWYYFVMG A+LVAVTV
Sbjct: 130 VLYISLLLGALGSGGIRPCIVAFGADQFHESDPKQNTKTWSYFNWYYFVMGVAMLVAVTV 189

Query: 196 LVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRK 255
           LVYIQDNIGWG GLGIPT AMF SI AF++GYPLYRNL+P GSP+TRL+QV VAAF KR 
Sbjct: 190 LVYIQDNIGWGIGLGIPTIAMFFSIAAFIVGYPLYRNLNPDGSPYTRLVQVIVAAFHKRN 249

Query: 256 LTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           +  +++P LLY+N+ELDA+ISL GKLLHT+ M F+
Sbjct: 250 VPYLSNPSLLYQNDELDASISLEGKLLHTEQMKFL 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221439|ref|NP_177024.1| putative nitrite transporter [Arabidopsis thaliana] gi|75266596|sp|Q9SX20.1|PTR18_ARATH RecName: Full=Probable nitrite transporter At1g68570 gi|5734721|gb|AAD49986.1|AC008075_19 Similar to gb|AF023472 peptide transporter from Hordeum vulgare and is a member of the PF|00854 Peptide transporter family. ESTs gb|T41927 and gb|AA395024 come from this gene [Arabidopsis thaliana] gi|20147231|gb|AAM10330.1| At1g68570/F24J5_7 [Arabidopsis thaliana] gi|25090385|gb|AAN72289.1| At1g68570/F24J5_7 [Arabidopsis thaliana] gi|110742209|dbj|BAE99031.1| peptide transporter like [Arabidopsis thaliana] gi|332196691|gb|AEE34812.1| putative nitrite transporter [Arabidopsis thaliana]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/285 (76%), Positives = 251/285 (88%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
           EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query: 66  NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
           NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct: 72  NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query: 126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
           C  A+  Q++ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct: 132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query: 186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
           GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct: 192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query: 246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM+F+
Sbjct: 252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFL 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838617|ref|XP_002887190.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297333031|gb|EFH63449.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/286 (76%), Positives = 250/286 (87%), Gaps = 1/286 (0%)

Query: 6   EEKGSNSHVKRQKGGMITMPFIFS-NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL 64
           EEK  +    R KGG+ITMPFIF  NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTL
Sbjct: 12  EEKQLHGRPNRPKGGLITMPFIFGMNEICEKLAVVGFHANMISYLTTQLHLPLTKAANTL 71

Query: 65  TNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ 124
           TNF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+
Sbjct: 72  TNFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEE 131

Query: 125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV 184
           VC  A+  Q+ ILYV+LLL ALGSGGIRPCVVAFGADQFDE+DP Q TKTW YFNWYYF 
Sbjct: 132 VCVVADTAQLTILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFC 191

Query: 185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLL 244
           MGAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+LDPAGSPFTRL+
Sbjct: 192 MGAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLDPAGSPFTRLI 251

Query: 245 QVCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
           QV VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM+F+
Sbjct: 252 QVGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFL 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.969	0.478	0.736	7.3e-114
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.925	0.477	0.461	5.4e-63
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.928	0.478	0.443	2.1e-61
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.948	0.476	0.45	7.1e-61
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.952	0.474	0.436	6.4e-60
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.850	0.458	0.446	7e-54
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.948	0.476	0.386	6.5e-51
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.918	0.457	0.405	5.8e-50
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.880	0.445	0.396	7.4e-50
TAIR|locus:2037452	607	AT1G52190 [Arabidopsis thalian	0.829	0.401	0.411	6.7e-49

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 210/285 (73%), Positives = 241/285 (84%)

Query:     6 EEKGSNSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT 65
             EEK  +    R KGG+ITMPFIF+NE+CEKLAVVGF+ NMISYLTTQLH+PLTKAANTLT
Sbjct:    12 EEKQLHGRPNRPKGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLT 71

Query:    66 NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV 125
             NF GT SLTPL+GAF+AD++AGRFWTIT ASIIYQIGM  LTISAI+P LRPPPC+GE+V
Sbjct:    72 NFAGTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGEEV 131

Query:   126 CQEANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185
             C  A+  Q++ILYV           IRPCVVAFGADQFDE+DP Q TKTW YFNWYYF M
Sbjct:   132 CVVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCM 191

Query:   186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQ 245
             GAA+L+AVTVLV+IQDN+GWG GLGIPT AMFLS+IAF+ G+ LYR+L PAGSPFTRL+Q
Sbjct:   192 GAAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQ 251

Query:   246 VCVAAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
             V VAAFRKRKL MV+DP LLY N+E+DA ISLGGKL HTKHM+F+
Sbjct:   252 VGVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFL 296

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 127/275 (46%), Positives = 172/275 (62%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K + G      FI   E CE+LA  G +TN+I+YL  Q++M    A+ +++N+ GT   T
Sbjct:    23 KNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYAT 82

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV 134
             PLIGAF+ADAY GR+WTI    +IY  GM  LTISA +P L P  C GE  C  A  GQ 
Sbjct:    83 PLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CSGE-TCH-ATAGQT 139

Query:   135 AILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT 194
             AI ++           I+PCV +FGADQFD+TD K+      +FNW+YFV+    ++A +
Sbjct:   140 AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASS 199

Query:   195 VLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
             VLV+IQ N+GWGWGLG+PT AM ++++ F  G   YR   P GSP TR+LQV VA+ RK 
Sbjct:   200 VLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKS 259

Query:   255 KLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNF 289
             K+ +  D  LLYEN++ +++I    KL HTK + F
Sbjct:   260 KVKIPEDESLLYENQDAESSIIGSRKLEHTKILTF 294

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 122/275 (44%), Positives = 164/275 (59%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K + G      FI  NE CE+LA  G  TN+++YL ++L+     AAN +TN+ GT  +T
Sbjct:    22 KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYIT 81

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV 134
             PLIGAF+ADAY GR+WTI     IY  GM  LT+SA +P L+P  C  +  C   N  Q 
Sbjct:    82 PLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD-TCHP-NSSQT 139

Query:   135 AILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT 194
             A+ +V           I+PCV +FGADQFDE D  +  K   +FNW+YF +    L+A T
Sbjct:   140 AVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAAT 199

Query:   195 VLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
             VLV+IQ N+GWGWG G+PT AM +++  F  G   YR   P GSP TR+ QV VAAFRK 
Sbjct:   200 VLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKI 259

Query:   255 KLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNF 289
              + +  D  LL+E  + ++ I    KL+HT ++ F
Sbjct:   260 SVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKF 294

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 126/280 (45%), Positives = 170/280 (60%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N  +K + G     PFI  NE CE+LA  G   N+I+YLTT+LH     AA  +T + GT
Sbjct:    35 NPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGT 94

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
               LTPLIGA +ADAY GR+WTI   S IY IGM  LT+SA +P L+P  C G+  C  A 
Sbjct:    95 CYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD-FCPSAT 153

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q A+ +            I+PCV +FGADQFD+TD ++  +   +FNW+YF +    L
Sbjct:   154 PAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGAL 213

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             V+ ++LV+IQ+N GWG G GIPT  M L+I +F  G PLYR   P GSP TR+ QV VA+
Sbjct:   214 VSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVAS 273

Query:   251 FRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
             FRK  + +  D  LLYE ++ ++AI+   K+ HT    ++
Sbjct:   274 FRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYL 313

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 123/282 (43%), Positives = 168/282 (59%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N   K++ G     PFI  NE CE+LA  G   N+I+Y T++LH     AA+ +  + GT
Sbjct:    46 NPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGT 105

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG--EQVCQE 128
               +TPLIGA +AD+Y GR+WTI   S IY IGM  LT+SA LP L+P  C G    +C  
Sbjct:   106 CYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSP 165

Query:   129 ANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
             A   Q A+ +            I+PCV +FGADQFD+TDP++  +   +FNW+YF +   
Sbjct:   166 ATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFYFSINIG 225

Query:   189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
               ++ T+LV++Q+N+GWG G  IPT  M +SI +F IG PLYR   P GSP TR+ QV V
Sbjct:   226 SFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVLV 285

Query:   249 AAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
             AA+RK KL +  D   LYE  E ++ I+   K+ HT    F+
Sbjct:   286 AAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFL 327

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 112/251 (44%), Positives = 148/251 (58%)

Query:    11 NSHVKRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             N  +K+  G     PFIF+NE CE+LA  G   N+I+Y T +LH     AA  +  + GT
Sbjct:    36 NPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHVMTWQGT 95

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN 130
               +TPLIGA +ADAY GR+WTI   S IY  GM+ LT+SA +P L+P  C G  +C  A 
Sbjct:    96 CYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAECIGS-LCPPAT 154

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q  +L+            I+PCV +FGADQFD+TDP +  +   +FNW+YF +     
Sbjct:   155 MVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASFFNWFYFTINIGAF 214

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             V+ TVLV+IQ+N GW  G  IPT  M L+ ++F  G PLYR   P GSP T + QV VAA
Sbjct:   215 VSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRGSPITSVCQVLVAA 274

Query:   251 FRKRKLTMVTD 261
             +RK  L +  D
Sbjct:   275 YRKSNLKVPED 285

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 109/282 (38%), Positives = 161/282 (57%)

Query:    12 SHVKR-QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT 70
             + V+R Q G      F+   EV E++A  G ++N++ Y+TT+LH    K++N +TN+ GT
Sbjct:    21 NRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGT 80

Query:    71 GSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQE 128
               LTP++GA+VADA+ GR+ T  I+S IY +GM  LT+S  LP L+PP C    V  C++
Sbjct:    81 SWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEK 140

Query:   129 ANKGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA 188
             A+  Q+A+ +             +P +   GADQFDE DPK       +FNW+ F +   
Sbjct:   141 ASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFG 200

Query:   189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCV 248
                A TVLVY+QDN+GW  G G+ T  +  SI  FL+G  LYR+  P GSPFT++ +V V
Sbjct:   201 TFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIV 260

Query:   249 AAFRKRKLTMVTDPKLLYENEELDAAISLGGKLLHTKHMNFI 290
             A+ RK +  M +D    YE   ++ A      +  T  + F+
Sbjct:   261 ASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFL 302

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 112/276 (40%), Positives = 163/276 (59%)

Query:    16 RQK-GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             R K GG  +   I   E  E+L  +G   N+++YLT  +H+    AANT+TNF GT  + 
Sbjct:    25 RSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFML 84

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG--EQVCQEANKG 132
              L+G F+AD + GR+ TI I + I   G+  LT+S I+P LRPP C       C++A+  
Sbjct:    85 CLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGI 144

Query:   133 QVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA 192
             Q+ +LY+           ++  V  FG+DQFDET+PK+ +K   +FN ++F +    L+A
Sbjct:   145 QLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLA 204

Query:   193 VTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFR 252
             VTVLVY+QD++G  WG GI  FA+ L++  FL G   YR     GSP T++  V VAA+R
Sbjct:   205 VTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWR 264

Query:   253 KRKLTMVTDPKLLYENEELDAAI-SLGGK--LLHTK 285
              RKL +  DP  LY+ +++ AA  S+ GK  L HT+
Sbjct:   265 NRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTE 300

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 104/262 (39%), Positives = 154/262 (58%)

Query:    14 VKRQ-KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGS 72
             V+R  +G      F+   EV E++A  G ++N+  Y+TT+LH    K++N +TN+ GT  
Sbjct:    23 VRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSW 82

Query:    73 LTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV--CQEAN 130
             LTP++GA+V DA  GR+ T  I+  IY  GM+ LT+S  +P ++PP C    V  C++A+
Sbjct:    83 LTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKAS 142

Query:   131 KGQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL 190
               Q+A+ +             +P +   GADQFD  DPK+ T+   +FNW+ F +    L
Sbjct:   143 VLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTL 202

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
              A TVLVY+QDN+GW  G G+PT  + +SI  FL+G P YR+  P GSPFT++ +V VA+
Sbjct:   203 FANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVAS 262

Query:   251 FRKRKLTMVTDPKLLYENEELD 272
             FRK    M  D    +E   L+
Sbjct:   263 FRKANAPMTHDITSFHELPSLE 284

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 102/248 (41%), Positives = 145/248 (58%)

Query:    15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLT 74
             K+ KGG+ITMPFI +NE  EK+A  G   NMI YL       + K  N L  +    + T
Sbjct:    19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFT 78

Query:    75 PLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV---CQEANK 131
             PL+GAF++D+Y GRF TI+IAS+   +GM+ L ++A+LPQ++P PC+       C  +  
Sbjct:    79 PLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTA 138

Query:   132 GQVAILYVXXXXXXXXXXXIRPCVVAFGADQFDETD-PKQATKTWKYFNWYYFVMGAAIL 190
              Q+A+LY            IRPC +AFGADQ D  + PK       +F WYY     A+L
Sbjct:   139 SQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVL 198

Query:   191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAA 250
             +A T +VYIQ+++GW  G G+P   M ++ + F++  PLY       S FT L Q  VAA
Sbjct:   199 IAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAA 258

Query:   251 FRKRKLTM 258
             ++KRKL++
Sbjct:   259 YKKRKLSL 266

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SX20	PTR18_ARATH	No assigned EC number	0.7684	0.9693	0.4781	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030327001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (583 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam00854	372	pfam00854, PTR2, POT family	3e-48
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	1e-25
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	7e-20
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	2e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	8e-04
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	0.002

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  164 bits (417), Expect = 3e-48
 Identities = 78/198 (39%), Positives = 107/198 (54%), Gaps = 19/198 (9%)

Query: 89  FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGS 148
           F TI + SIIY IG + LT+ AI P L P               QVA+ Y+ L L ALG+
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPV--------------QVALFYIGLYLIALGT 46

Query: 149 GGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWG 208
           GGI+P V AFGADQFDET   +      +F+W+YF + A  L+A  +  Y+Q N+G+  G
Sbjct: 47  GGIKPNVSAFGADQFDETQDPR---RDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLG 103

Query: 209 LGIPTFAMFLSIIAFLIGYPLYRNLDPA-GSPFTR-LLQVCVAAFRKRKLTMVTDPKLLY 266
            G+P   M L+++ FL+G   Y+   P  GSPFT  +  +  AA + RKL +  D   LY
Sbjct: 104 FGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLY 163

Query: 267 ENEELDAAISLGGKLLHT 284
              E     S+    +HT
Sbjct: 164 WALEKYNKRSISQTKVHT 181

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  106 bits (265), Expect = 1e-25
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 24/224 (10%)

Query: 38  VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI 97
             G  T ++ YL   L      A N    F     LTPLIGA +AD++ G+F TI   S+
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 98  IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVA 157
           +Y +G    ++ A+ P L  P                A+  V L L ALG+GGI+PCV A
Sbjct: 63  VYVVGHALASLGAV-PSLGHPL-------------HDALSLVGLALIALGTGGIKPCVSA 108

Query: 158 FGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-------WGWGLG 210
           FG DQF+E   +Q +  +++F+++YF + A  L +  +   ++ ++G       +    G
Sbjct: 109 FGGDQFEE---RQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFG 165

Query: 211 IPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKR 254
           +P   M L++I F +G  +Y+   P G+  +++++  V A +KR
Sbjct: 166 VPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 88.9 bits (221), Expect = 7e-20
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 28/204 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQ----LHMPLTKAANTLTNFGGTGSLTPLIGAFVA 82
           IF  E+ E+ +  G    +I YL  Q    L    T A    + +G    LTP+IG ++A
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 83  DAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLL 142
           D   G   TI + +I+  IG + L IS++                         LY+ L 
Sbjct: 86  DRVLGTRRTIVLGAILMAIGHLVLAISSV--------------------SGPGGLYIGLA 125

Query: 143 LAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 202
           L  +G+G  +P + +   + + + DP++       F  +Y  +    L+A  +   +  N
Sbjct: 126 LIIVGTGLFKPNISSLLGELYPKDDPRRDGG----FTLFYMGINIGSLIAPIITGLLAIN 181

Query: 203 IGWGWGLGIPTFAMFLSIIAFLIG 226
            GW  G G+    M + ++ FL+G
Sbjct: 182 YGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 44/201 (21%), Positives = 79/201 (39%), Gaps = 25/201 (12%)

Query: 26  FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY 85
           ++ + ++ E  +  G    +I YLT QL      A    + +     +TP++G F+AD  
Sbjct: 13  YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKV 72

Query: 86  AGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAA 145
            G    + + +++  IG + L  S I P                     + LY+SL +  
Sbjct: 73  LGNRMAVMLGALLMAIGHVVLGASEIHP---------------------SFLYLSLAIIV 111

Query: 146 LGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGW 205
            G G  +  V     + ++ TDP++       F+  Y       ++A     Y Q+   W
Sbjct: 112 CGYGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYSW 167

Query: 206 GWGLGIPTFAMFLSIIAFLIG 226
             G G+    M   ++ FL G
Sbjct: 168 AMGFGLAAVGMIAGLVIFLCG 188

Length = 493

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 29/187 (15%)

Query: 43  TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG 102
           +  +  L   L +  ++A   ++ F    +L  L+  +++D + GR   + +  +++ +G
Sbjct: 19  SPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALG 77

Query: 103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQ 162
            + L  ++ L  L                       V   L  LG G + P   A  A+ 
Sbjct: 78  SLLLAFASSLWLL----------------------LVGRFLLGLGGGALYPAAAALIAEW 115

Query: 163 FDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA 222
           F   +  +A         +    G   L+   +   + +++GW W   I      L  + 
Sbjct: 116 FPPKERGRA------LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169

Query: 223 FLIGYPL 229
            L    L
Sbjct: 170 LLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 29/217 (13%)

Query: 36  LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA 95
           L        +  YL   L +  T+    LT F    +L   +   ++D + GR   + I 
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 96  SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCV 155
            +++ +G++ L  ++                       + +L V  +L  LG G + P  
Sbjct: 69  LLLFALGLLLLLFAS----------------------SLWLLLVLRVLQGLGGGALFPAA 106

Query: 156 VAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFA 215
            A  AD F   +  +A              G    +   +   +    GW     I    
Sbjct: 107 AALIADWFPPEERGRA------LGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAIL 160

Query: 216 MFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFR 252
             L+ +   +  P          P        V A++
Sbjct: 161 ALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197

Length = 346

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 27/202 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK--AANTLTNFGGTGSLTPLIGAFVADA 84
           +F  E+ E+ +  G    +  YL  Q  +  ++  A      +     L   +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 85  YAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLA 144
             G   T+ +  I+  +G   L +S                          +++  L   
Sbjct: 75  VWGTKKTMVLGGIVLMLGHFMLAMSIYP----------------------DLIFYGLGTI 112

Query: 145 ALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG 204
           A+GSG  +    +     ++  D  +       F  +Y  +     ++  +   I +N G
Sbjct: 113 AVGSGLFKANPSSMVGKLYERGDMPRRDGG---FTLFYMSINIGSFISPLLAGVIAENYG 169

Query: 205 WGWGLGIPTFAMFLSIIAFLIG 226
           +  G  +    M + ++ F  G
Sbjct: 170 YHVGFNLAAVGMVIGLLTFFAG 191

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.93
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	99.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.87
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.85
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.82
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.79
PRK10054	395	putative transporter; Provisional	99.78
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.78
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.77
PRK03545	390	putative arabinose transporter; Provisional	99.77
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.76
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.75
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.75
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.75
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.75
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.75
PRK12382	392	putative transporter; Provisional	99.74
TIGR00891	405	2A0112 putative sialic acid transporter.	99.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.74
PRK10504	471	putative transporter; Provisional	99.73
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.73
TIGR00900	365	2A0121 H+ Antiporter protein.	99.73
PRK05122	399	major facilitator superfamily transporter; Provisi	99.72
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.72
PRK10091	382	MFS transport protein AraJ; Provisional	99.71
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.71
TIGR00895	398	2A0115 benzoate transport.	99.71
PRK11663	434	regulatory protein UhpC; Provisional	99.71
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.71
PRK12307	426	putative sialic acid transporter; Provisional	99.71
TIGR00893	399	2A0114 d-galactonate transporter.	99.7
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.7
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.69
PRK03893	496	putative sialic acid transporter; Provisional	99.69
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.69
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.69
PRK09874	408	drug efflux system protein MdtG; Provisional	99.69
PRK10642	490	proline/glycine betaine transporter; Provisional	99.69
PRK03699	394	putative transporter; Provisional	99.68
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.68
PRK09705	393	cynX putative cyanate transporter; Provisional	99.68
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.67
PRK11043	401	putative transporter; Provisional	99.67
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.67
PLN00028	476	nitrate transmembrane transporter; Provisional	99.67
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.67
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.67
PRK10133	438	L-fucose transporter; Provisional	99.67
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.66
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.66
PRK03633	381	putative MFS family transporter protein; Provision	99.65
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.65
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.65
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.64
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.64
PRK09952	438	shikimate transporter; Provisional	99.63
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.63
PRK15011	393	sugar efflux transporter B; Provisional	99.63
PRK10642	490	proline/glycine betaine transporter; Provisional	99.63
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.63
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.63
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.63
PRK10489	417	enterobactin exporter EntS; Provisional	99.62
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.62
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.62
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.61
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.61
TIGR00805	633	oat sodium-independent organic anion transporter.	99.6
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.6
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.59
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.58
TIGR00898	505	2A0119 cation transport protein.	99.58
PRK15075	434	citrate-proton symporter; Provisional	99.58
PRK15011	393	sugar efflux transporter B; Provisional	99.58
PRK03699	394	putative transporter; Provisional	99.57
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.56
PRK05122	399	major facilitator superfamily transporter; Provisi	99.56
PRK09952	438	shikimate transporter; Provisional	99.56
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.56
KOG2532	466	consensus Permease of the major facilitator superf	99.56
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.55
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.55
PRK09528	420	lacY galactoside permease; Reviewed	99.54
KOG0254	513	consensus Predicted transporter (major facilitator	99.53
PRK11010	491	ampG muropeptide transporter; Validated	99.53
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.53
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.53
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.52
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.52
PRK09705	393	cynX putative cyanate transporter; Provisional	99.52
TIGR00901	356	2A0125 AmpG-related permease.	99.51
PRK03893	496	putative sialic acid transporter; Provisional	99.51
TIGR00893	399	2A0114 d-galactonate transporter.	99.5
PRK03545	390	putative arabinose transporter; Provisional	99.5
PRK11902	402	ampG muropeptide transporter; Reviewed	99.5
PTZ00207	591	hypothetical protein; Provisional	99.49
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.49
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.48
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.48
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.48
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.48
PRK09874	408	drug efflux system protein MdtG; Provisional	99.48
PRK12382	392	putative transporter; Provisional	99.48
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.47
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.47
TIGR00891	405	2A0112 putative sialic acid transporter.	99.46
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.46
PRK11663	434	regulatory protein UhpC; Provisional	99.45
PRK10489	417	enterobactin exporter EntS; Provisional	99.45
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.45
PRK09528	420	lacY galactoside permease; Reviewed	99.45
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.45
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.45
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.43
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.42
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.42
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.42
PRK15075	434	citrate-proton symporter; Provisional	99.42
PRK03633	381	putative MFS family transporter protein; Provision	99.42
PLN00028	476	nitrate transmembrane transporter; Provisional	99.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.41
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.4
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.39
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.39
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.39
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.39
PRK11010	491	ampG muropeptide transporter; Validated	99.39
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.37
KOG0569	485	consensus Permease of the major facilitator superf	99.36
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.35
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.34
PRK10504	471	putative transporter; Provisional	99.34
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.34
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.34
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.33
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.33
TIGR00900	365	2A0121 H+ Antiporter protein.	99.33
KOG2615	451	consensus Permease of the major facilitator superf	99.32
PRK10091	382	MFS transport protein AraJ; Provisional	99.31
PRK12307	426	putative sialic acid transporter; Provisional	99.31
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.3
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.3
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.3
KOG2533	495	consensus Permease of the major facilitator superf	99.27
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.27
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.27
PRK09669	444	putative symporter YagG; Provisional	99.27
TIGR00895	398	2A0115 benzoate transport.	99.27
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.26
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.26
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.26
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.25
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.25
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.25
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.25
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.24
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.23
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.23
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.23
PRK10133	438	L-fucose transporter; Provisional	99.23
PRK09848	448	glucuronide transporter; Provisional	99.23
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.22
PRK10429	473	melibiose:sodium symporter; Provisional	99.21
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.2
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.2
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.19
PF13347	428	MFS_2: MFS/sugar transport protein	99.18
PRK11902	402	ampG muropeptide transporter; Reviewed	99.17
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.17
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.16
PRK10054	395	putative transporter; Provisional	99.16
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.14
PRK10429	473	melibiose:sodium symporter; Provisional	99.14
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.14
PRK11462	460	putative transporter; Provisional	99.12
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.12
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.12
TIGR00901	356	2A0125 AmpG-related permease.	99.12
PF13347	428	MFS_2: MFS/sugar transport protein	99.11
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.11
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.1
PRK09848	448	glucuronide transporter; Provisional	99.09
TIGR00898	505	2A0119 cation transport protein.	99.08
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.08
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.08
PRK11043	401	putative transporter; Provisional	99.08
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.07
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.05
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.01
PRK09669	444	putative symporter YagG; Provisional	98.99
KOG2532	466	consensus Permease of the major facilitator superf	98.99
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.97
COG2211	467	MelB Na+/melibiose symporter and related transport	98.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.93
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.92
KOG0569	485	consensus Permease of the major facilitator superf	98.9
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.89
COG2211	467	MelB Na+/melibiose symporter and related transport	98.88
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.87
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.87
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.83
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.82
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.81
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.78
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.73
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.72
PRK11462	460	putative transporter; Provisional	98.72
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.7
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.69
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.69
KOG2563	480	consensus Permease of the major facilitator superf	98.66
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.57
COG0477	338	ProP Permeases of the major facilitator superfamil	98.51
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.5
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.49
KOG2533	495	consensus Permease of the major facilitator superf	98.47
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.42
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.4
KOG3626	735	consensus Organic anion transporter [Secondary met	98.4
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.36
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.34
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.29
KOG0254	513	consensus Predicted transporter (major facilitator	98.29
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.27
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.27
PF12832	77	MFS_1_like: MFS_1 like family	98.25
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.18
KOG3762	618	consensus Predicted transporter [General function	98.15
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.09
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.04
TIGR00805	633	oat sodium-independent organic anion transporter.	97.97
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.94
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.81
KOG0637	498	consensus Sucrose transporter and related proteins	97.79
PRK03612	521	spermidine synthase; Provisional	97.68
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.66
KOG2563	480	consensus Permease of the major facilitator superf	97.64
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.64
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.53
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.53
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.53
KOG2615	451	consensus Permease of the major facilitator superf	97.51
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.5
PTZ00207	591	hypothetical protein; Provisional	97.45
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.27
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.22
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.04
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.73
KOG3762	618	consensus Predicted transporter [General function	96.58
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.57
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.53
KOG3626	735	consensus Organic anion transporter [Secondary met	96.37
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.21
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.11
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.4
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.14
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.84
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.61
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.44
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	92.26
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.9
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.41
KOG3097	390	consensus Predicted membrane protein [Function unk	89.87
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	89.71
KOG0637	498	consensus Sucrose transporter and related proteins	88.7
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	88.6
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	87.13
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	87.0
COG3202	509	ATP/ADP translocase [Energy production and convers	86.97
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	84.65
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	83.23
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	81.27

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.93  E-value=1.7e-25  Score=206.22  Aligned_cols=194  Identities=27%  Similarity=0.475  Sum_probs=178.7

Q ss_pred             ccCCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcC----CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHH
Q 022608           16 RQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH----MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT   91 (294)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~   91 (294)
                      ...+++|.++.++.++++|+++||++...+..|+..+++    +|.+++..+.+.+....++.++++||++||++|+|++
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            335689999999999999999999999999999998888    9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 022608           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (294)
Q Consensus        92 l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  171 (294)
                      +..|.+++.+|.++++...                    ...+..++++.+++++|.|+..+++..+++|++|++|+   
T Consensus        95 I~lGail~~iGh~~L~~~~--------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp---  151 (498)
T COG3104          95 IVLGAILMAIGHLVLAISS--------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP---  151 (498)
T ss_pred             HHHHHHHHHHHHHHHhccc--------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc---
Confidence            9999999999999988752                    01466788999999999999999999999999999986   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhccceecc
Q 022608          172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNL  233 (294)
Q Consensus       172 ~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  233 (294)
                       ||-..++.+|++.|+|++++|++.+++.+++||+..|...++.+.++++.++++++++...
T Consensus       152 -rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~  212 (498)
T COG3104         152 -RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI  212 (498)
T ss_pred             -ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence             5888999999999999999999999999999999999999999999999999988766543

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=99.92  E-value=1.3e-23  Score=201.49  Aligned_cols=246  Identities=51%  Similarity=0.894  Sum_probs=228.2

Q ss_pred             cCCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHH
Q 022608           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (294)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~   96 (294)
                      ..+.|+++..++..+.++++++|++..++..|++..+|.+...+...++.+.+...+.++++++++|.++||.+++.++.
T Consensus        32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s  111 (571)
T KOG1237|consen   32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS  111 (571)
T ss_pred             eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCC---CCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhh
Q 022608           97 IIYQIGMICLTISAILPQLRPPPC---EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (294)
Q Consensus        97 ~~~~i~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (294)
                      +++.+|..++.+...+|++.++.|   .+.+.|..+.......++.++.+.++|.|+..++..++.+|++++.++.++..
T Consensus       112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~  191 (571)
T KOG1237|consen  112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG  191 (571)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence            999999999999988999999887   34557888888888899999999999999999999999999999776666667


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhccceeccCCCCChhHHHHHHHHHHHHh
Q 022608          174 TWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRK  253 (294)
Q Consensus       174 rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (294)
                      ....+.|+++..++|..++..+..+++++.||.+.|.++.+++.+++++++...+.|+.++|.++|...+.+++..+.++
T Consensus       192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k  271 (571)
T KOG1237|consen  192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFK  271 (571)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             CccccCCCC
Q 022608          254 RKLTMVTDP  262 (294)
Q Consensus       254 ~~~~~~~~~  262 (294)
                      ++...+.++
T Consensus       272 ~~~~~~~~~  280 (571)
T KOG1237|consen  272 RKAVVSLDP  280 (571)
T ss_pred             HhccCCCcc
Confidence            887766653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=1e-22  Score=193.87  Aligned_cols=189  Identities=17%  Similarity=0.304  Sum_probs=165.3

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~   97 (294)
                      ++++|.++.++++++++++++|++..+++.|+++++|++..+++++.+.+....++..+++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999994499999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      ++.++.+.+.++..                     ....++++++++++|.|...++..++++|++|++++    +|++.
T Consensus        90 ~~~~g~~~~~~~~~---------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~  144 (489)
T PRK10207         90 VLAIGYFMTGMSLL---------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGA  144 (489)
T ss_pred             HHHHHHHHHHHhcc---------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcc
Confidence            99999988887540                     123456789999999999999999999999998752    46788


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcccee
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  231 (294)
                      +++++++.|+|..++|.+++++.++.||++.|++..+.+.++++.+...++.++
T Consensus       145 ~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~  198 (489)
T PRK10207        145 FTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVK  198 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhc
Confidence            999999999999999999999999999999999987766666666655554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=2.7e-21  Score=183.75  Aligned_cols=189  Identities=19%  Similarity=0.310  Sum_probs=165.5

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhh--cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA   95 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~   95 (294)
                      .++++.++.+++.++++++++|++.++++.|++++  +|++..+++.+.+.+.++..++++++|+++||++|||++++++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            35677888999999999999999999999999887  9999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhh
Q 022608           96 SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  175 (294)
Q Consensus        96 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg  175 (294)
                      .++..++.+++.++.                      +.+.+.+++++.|+|.|...++..++++|++|+++++   +|+
T Consensus        86 ~~~~~~g~~~~~~~~----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~  140 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRD  140 (475)
T ss_pred             HHHHHHHHHHHHhcc----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---ccc
Confidence            999999988877654                      5566778899999999999999999999999876421   588


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcccee
Q 022608          176 KYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (294)
Q Consensus       176 ~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  231 (294)
                      ++++++|++.++|+++||.+++++.+.+||++.|.+.++.++++.+.+...++.++
T Consensus       141 ~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~  196 (475)
T TIGR00924       141 GGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLR  196 (475)
T ss_pred             ceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            89999999999999999999999999899999999988776666666655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.87  E-value=8.9e-21  Score=179.40  Aligned_cols=186  Identities=23%  Similarity=0.416  Sum_probs=159.5

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      +++.++.++..++++++++|++..+++.|+++.+|++..+++.+.+.+....+++++++|+++||++||||+++++.++.
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence            78889999999999999999999999999999999999999999999999999999999999999779999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.+++....                     .....++++..+..+|.|...++..++++|++|++++    +|.+.++
T Consensus        87 ~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~  141 (493)
T PRK15462         87 AIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFS  141 (493)
T ss_pred             HHHHHHHHHhh---------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceeh
Confidence            88877665322                     0122344555566788888888889999999998643    5888999


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhccce
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY  230 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  230 (294)
                      ++|...++|+.++|.+.+++.+.+||++.|.+.++.++++++.+...++.+
T Consensus       142 i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l  192 (493)
T PRK15462        142 LMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHF  192 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999998877777777776655544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.85  E-value=8.1e-20  Score=174.67  Aligned_cols=185  Identities=19%  Similarity=0.365  Sum_probs=157.7

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      ++++.++.++..++++++++|++..+++.|+++++|++..+++++.+.+........+++|+++||++|||++++++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999888888777777889999999944999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..++.+++.++.                     ...+.+.+++++.|+|.|...++..++++|++|++++    ++++.+
T Consensus        98 ~~ig~~l~~~~~---------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~  152 (500)
T PRK09584         98 LAIGYALVAWSG---------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAF  152 (500)
T ss_pred             HHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcc
Confidence            998887777643                     0345567788899999999999999999999987642    456678


Q ss_pred             HHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      +++|++.++|+.++|.+.+++.+.+||++.|.+.++...++++.++...+
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~  202 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQR  202 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            89999999999999999999999999999999988766666655554443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.82  E-value=7.2e-19  Score=171.66  Aligned_cols=203  Identities=31%  Similarity=0.596  Sum_probs=172.3

Q ss_pred             HhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022608           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (294)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~  115 (294)
                      ++||++...+..|+++.+|++.+.+..+...+....++.++++|+++|+++||++++.++.+++.+|.+++++.. .|..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence            468999999999999999999999999999999999999999999999999999999999999999998888754 2211


Q ss_pred             CCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 022608          116 RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~  195 (294)
                      .             ........+++..+.++|.|++.++..++.+|++++++   ++++.++++++|++.|+|+++++.+
T Consensus        80 ~-------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i  143 (654)
T TIGR00926        80 G-------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTII  143 (654)
T ss_pred             c-------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0             01134456788889999999999999999999998754   2358899999999999999999999


Q ss_pred             hhheeec-------cchhhhhhHhHHHHHHHHHHHHHhccceeccCCCCChhHHHHHHHHHHHHhCc
Q 022608          196 LVYIQDN-------IGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRK  255 (294)
Q Consensus       196 ~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (294)
                      .+++.+.       .+|..+|.+++++++++++++...+++++..++.+++..+..+++....+++.
T Consensus       144 ~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~  210 (654)
T TIGR00926       144 TPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRF  210 (654)
T ss_pred             HHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhh
Confidence            9988744       36999999999999999999988888887777778877777777777776543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.79  E-value=9.1e-18  Score=155.88  Aligned_cols=177  Identities=11%  Similarity=0.127  Sum_probs=149.9

Q ss_pred             cccCCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHH
Q 022608           15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI   94 (294)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~   94 (294)
                      +.++..|+..+.+.+..++.....|.....+|.+ .+++|+++.+.++..+...++..+++++.|+++||+ |||++++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~   90 (394)
T PRK10213         13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVIL   90 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHH
Confidence            3445677776666666666656666656666654 568999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhh
Q 022608           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (294)
Q Consensus        95 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  174 (294)
                      +.++..++.+++....                      +.+.+++.|++.|++.+...+...+++.|++|++      +|
T Consensus        91 ~~~~~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~  142 (394)
T PRK10213         91 FAVLLTLSCLLVSFAN----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TV  142 (394)
T ss_pred             HHHHHHHHHHHHHHHC----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HH
Confidence            9999998888777655                      7889999999999999999999999999999987      59


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          175 WKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       175 g~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      ++..+.+....++|..++|.+++++.+.+||++.|++.+++.++..+
T Consensus       143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999989999999887765544433

>PRK10054 putative transporter; Provisional

Probab=99.78  E-value=2.4e-17  Score=153.11  Aligned_cols=173  Identities=13%  Similarity=0.134  Sum_probs=148.0

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .|+.+.+++..++...+++.+.++++.|+++++|++..+.+++.+...+...+++++.|+++||+ |||++++++.++..
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHHHH
Confidence            45677777888899999999999999999999999999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+...+..                      +.+.+++++.+.+.+.+...+...+...|.+|++      +|++.+++
T Consensus        85 ~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~  136 (395)
T PRK10054         85 SGFIAIPLVN----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSL  136 (395)
T ss_pred             HHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHH
Confidence            8877776655                      5666777777777777777788889999999876      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      .+...++|..++|.+++++.+ .||+..|++.+++.++.++..
T Consensus       137 ~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        137 NYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence            999999999999999998764 689999988777666654433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.78  E-value=6.7e-19  Score=160.85  Aligned_cols=179  Identities=12%  Similarity=0.160  Sum_probs=156.0

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      ..++.+..+.++.+++++--|.+.+.+ .-.++.+|+++...+++.+++++..++.+|++|+++||+ .|++++.+|..+
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i  107 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI  107 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence            344556666677777777777766644 445678999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..+.++...++.                      .+|++.++|.+.|+|.+.+.+..+++++|.||..      +|++.+
T Consensus       108 W~~Av~~~~fs~----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~  159 (493)
T KOG1330|consen  108 WTLAVFASGFSN----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVL  159 (493)
T ss_pred             HHHHHHHHHHHH----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHH
Confidence            999999999887                      8999999999999999999999999999999998      699999


Q ss_pred             HHHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHHHhc
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      +++|++..+|+.+|.+++.++.+..+ ||++|+..+++.++..++..+..
T Consensus       160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~  209 (493)
T KOG1330|consen  160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFV  209 (493)
T ss_pred             HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhc
Confidence            99999999999999999999888777 99999999988766655444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.77  E-value=2.4e-17  Score=153.91  Aligned_cols=175  Identities=13%  Similarity=0.124  Sum_probs=144.2

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      +|+.++.+.+..+++......+ .+..+.+++++|++..+.+++.+++.++..+++++.|+++||+ |||+++..++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~   83 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW   83 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence            4555555555555555544444 3444578899999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.++..++.                      +.+.+++.|++.|++.+...+....++.|++|++      +|++..+
T Consensus        84 ~~~~~~~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~  135 (412)
T TIGR02332        84 GIASTATMFAT----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANA  135 (412)
T ss_pred             HHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHH
Confidence            99988888766                      6788999999999999999988889999999987      5999999


Q ss_pred             HHHHHHHHHHHHHHHhhhheee------ccchhhhhhHhHHHHHHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQD------NIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +++....+|..+++.+++++.+      ..|||+.|.+.++..++..++..
T Consensus       136 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~  186 (412)
T TIGR02332       136 LFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTW  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999887653      46999999987766554443333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.77  E-value=3.2e-17  Score=151.69  Aligned_cols=174  Identities=9%  Similarity=0.048  Sum_probs=143.4

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      |...+.+.+..++.....+.....+ +.+.+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   85 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI   85 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence            4444444455555444444332333 456778999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+.+.++.                      +.+.+.++|++.|++.+...+...+++.|++|++      +|++.+++
T Consensus        86 ~~~~~~~~~~----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~  137 (390)
T PRK03545         86 ASHVLSALAW----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSL  137 (390)
T ss_pred             HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHH
Confidence            9988887766                      7888999999999999888888899999999987      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +..+.++|..++|.+++.+.+..||++.|++.+++.++..+...
T Consensus       138 ~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~  181 (390)
T PRK03545        138 LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLI  181 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988889999999988776655544333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.76  E-value=3.9e-17  Score=147.53  Aligned_cols=166  Identities=17%  Similarity=0.304  Sum_probs=141.9

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 022608           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLT  107 (294)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~  107 (294)
                      ++..++..+........++.++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+++.++.++..++..+..
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            3445555666665666666588889999999999999999999999999999999998 999999999999988855555


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHH
Q 022608          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  187 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~i  187 (294)
                      ++.                      +.+.+++++++.|++.+...+....++.|.+|++      +|++.++..+...++
T Consensus        81 ~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~  132 (352)
T PF07690_consen   81 FAS----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSL  132 (352)
T ss_dssp             HHC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHH
T ss_pred             hhh----------------------hHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhh
Confidence            433                      5568899999999999999999999999999997      499999999999999


Q ss_pred             HHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHH
Q 022608          188 AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       188 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      |..++|.+++++.+..+|++.|++.++..++..++
T Consensus       133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            99999999999998999999999988877776654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.75  E-value=9.4e-17  Score=147.86  Aligned_cols=159  Identities=16%  Similarity=0.076  Sum_probs=123.6

Q ss_pred             HhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022608           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (294)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~  115 (294)
                      ..+..+ ....+.+++++|++..+.+++.+.+.+++.+++++.|+++||+ |||++++.+.+....+.+ .....     
T Consensus         5 ~~~~~~-~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~-----   76 (368)
T TIGR00903         5 AIWVTF-SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP-----   76 (368)
T ss_pred             HHHHHH-HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh-----
Confidence            333433 3444555778999999999999999999999999999999998 999887665544444432 22221     


Q ss_pred             CCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 022608          116 RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~  195 (294)
                                      .+...++++|++.|+|.+.. .......+|++|++      +|+++.++.+.+..+|..+++.+
T Consensus        77 ----------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~  133 (368)
T TIGR00903        77 ----------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAA  133 (368)
T ss_pred             ----------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                            16788999999999999864 45556669999987      69999999999999999999999


Q ss_pred             hhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          196 LVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       196 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ++++.+.+|||+.|.+.+++.++..++...
T Consensus       134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~  163 (368)
T TIGR00903       134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLA  163 (368)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            999988899999998866665554444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.75  E-value=1.3e-16  Score=149.05  Aligned_cols=148  Identities=10%  Similarity=0.139  Sum_probs=128.6

Q ss_pred             hhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccc
Q 022608           49 LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQE  128 (294)
Q Consensus        49 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~  128 (294)
                      +.+++|.+..+.++..+.+.++..++++++|+++||+ |||++++.+.++..++.+++..+.                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            5678999999999999999999999999999999998 999999999998888888877765                  


Q ss_pred             ccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhh
Q 022608          129 ANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWG  208 (294)
Q Consensus       129 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~  208 (294)
                          +.+.++++|++.|++.+...+....++.|.+|++      ++++.+++++...++|..++|.+++.+.+..||++.
T Consensus       103 ----~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~  172 (413)
T PRK15403        103 ----SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVL  172 (413)
T ss_pred             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence                7788999999999998876667778889999987      588889999999999999999999988888899999


Q ss_pred             hhHhHHHHHHHHHHHHH
Q 022608          209 LGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       209 f~~~~~~~~~~~~~~~~  225 (294)
                      |++.++..++..+..++
T Consensus       173 f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        173 FAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99887766655544333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.75  E-value=1.5e-16  Score=145.90  Aligned_cols=175  Identities=17%  Similarity=0.144  Sum_probs=144.9

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .+.++.+.+..+...+........+| .+++++|.+..+.+++.+...++..++.++.|+++||+ |||+++..+.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            34444444555555555555555554 45678999999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+.+....                      +.+.+.+.+++.|++.+...+...+++.|.+|++      +|++.++.
T Consensus        82 ~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  133 (385)
T TIGR00710        82 LSSLGLALSN----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSI  133 (385)
T ss_pred             HHHHHHHHHc----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHH
Confidence            8888777665                      6778889999999999999999999999999977      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      .+....+|..+++.+++++.+..+|+..|++.++..++..+....
T Consensus       134 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       134 LMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888889999998877766555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.75  E-value=1.7e-16  Score=147.64  Aligned_cols=168  Identities=13%  Similarity=0.130  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 022608           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (294)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i  104 (294)
                      +.++...++...+.+.+.++++.|+++++|++..+.+++.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5566788888899899999999999999999999999999999999999999999999998 999999999999998888


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  184 (294)
                      .+....                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..++.+..
T Consensus        92 ~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~  143 (400)
T PRK11646         92 TMAIAH----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQ  143 (400)
T ss_pred             HHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHH
Confidence            776654                      6778888999999999888888899999999887      599999999999


Q ss_pred             HHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHH
Q 022608          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       185 ~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      .++|..+||.+++++. ..||++.|++.++..++..+.
T Consensus       144 ~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        144 DSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888 679999998877665554433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.9e-16  Score=144.57  Aligned_cols=182  Identities=12%  Similarity=0.102  Sum_probs=164.3

Q ss_pred             cCCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHH
Q 022608           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (294)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~   96 (294)
                      .+..|..++.+.+..|+....=+...+.+|.- .+++|++...+++.++.+..+..++.|+-..+.||+ .||++++..+
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~i-A~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l   85 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPI-AADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL   85 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence            35567778888888888888777776666554 578999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus        97 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      .+++++.++.+++.                      +++.+.++|++.|+..|.+++...++.+++.|++      +|++
T Consensus        86 ~lFi~~n~l~alAp----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~  137 (394)
T COG2814          86 ALFIVSNLLSALAP----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGR  137 (394)
T ss_pred             HHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhh
Confidence            99999999999988                      8999999999999999999999999999999999      6999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          177 YFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       177 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      +.+..+.+..+...+|..++.++.+.+|||.+|+..+.+.++.++..+...|
T Consensus       138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999988888777776666555

>PRK12382 putative transporter; Provisional

Probab=99.74  E-value=2.9e-16  Score=145.19  Aligned_cols=171  Identities=15%  Similarity=0.101  Sum_probs=137.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      ..+.+.+..++..++.....+.+|.|+++++|+|..+.+++.+.+.+...+++++.|+++||+ |||++++.+.++..++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA   94 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence            445555566666666666777888899999999999999999999999999999999999998 9999999998877666


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      .+........+..              ...+.+.++++|++.|++.+...+...+++.|.+|++      +|++++++++
T Consensus        95 ~~~~~~~~~~~~~--------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~  154 (392)
T PRK12382         95 GLAYLLAAILPVS--------------APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNG  154 (392)
T ss_pred             HHHHHhhhccccc--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHH
Confidence            5443332211110              0126778899999999999988888888999999887      5999999999


Q ss_pred             HHHHHHHHHHHHhhhheeeccchhhhhhHhHH
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTF  214 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~  214 (294)
                      .+.++|..++|.+++++.+.+||+..+.+..+
T Consensus       155 ~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  186 (392)
T PRK12382        155 MAMYGALAAGAPLGLLLHSHFGFAALALTTMV  186 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence            99999999999999988888899976665444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.74  E-value=2.5e-16  Score=145.14  Aligned_cols=173  Identities=12%  Similarity=0.168  Sum_probs=146.1

Q ss_pred             cCCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHH
Q 022608           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (294)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~   96 (294)
                      .+.+|+.+..+.+..+...+..+...... +.+++++|++..+.+++.+...++..++.++.|+++||+ |||++++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVL-AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            35667777777777777777766665555 456788999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus        97 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      ++..++.+++.+..                      +++.+++.|++.|++.+...+...+++.|.+|++      +|++
T Consensus        85 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~  136 (405)
T TIGR00891        85 VLFSAGTLACGFAP----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNK  136 (405)
T ss_pred             HHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhH
Confidence            88888888777655                      6788889999999999999999999999999987      5999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeccc--hhhhhhHhHHHHHHH
Q 022608          177 YFNWYYFVMGAAILVAVTVLVYIQDNIG--WGWGLGIPTFAMFLS  219 (294)
Q Consensus       177 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~  219 (294)
                      ..++++....+|..+++.+.+.+.+..+  |++.|.+.++..++.
T Consensus       137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            9999999999999999999888776655  998888765544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.74  E-value=1.8e-16  Score=151.53  Aligned_cols=179  Identities=12%  Similarity=0.059  Sum_probs=144.9

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      |..+..+.+..++..+-...+...+|.. .+++|.+..+.+++.+.+.++...+.++.|+++||+ |||++++++.++..
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            3444444455555555444444445554 578999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+++..+.                      +.+.++++|++.|+|.+...+.....+.+.+++++     +|++++++
T Consensus        83 ~~~~~~~~a~----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~  135 (495)
T PRK14995         83 LASLAAAFSP----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGV  135 (495)
T ss_pred             HHHHHHHHcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHH
Confidence            9999888766                      78899999999999999888877777878775432     69999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      +....++|..+||.+++++.+..|||+.|++...+.++.+++.....+
T Consensus       136 ~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~  183 (495)
T PRK14995        136 WAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVP  183 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999877665555444444333

>PRK10504 putative transporter; Provisional

Probab=99.73  E-value=2.6e-16  Score=149.06  Aligned_cols=178  Identities=13%  Similarity=0.110  Sum_probs=149.5

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .+..+.+....++..+..+.+...+|.+.+ ++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++.+.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            335666677777777777777787877765 6999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+.+.+..                      +.+.++++|++.|++.+...+....++.|.+|++      +|++..++
T Consensus        87 ~~~~~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  138 (471)
T PRK10504         87 LGSLFCALSG----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTF  138 (471)
T ss_pred             HHHHHHHHhC----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHH
Confidence            8877766544                      6778889999999999999999999999999876      58999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      ++...++|..++|.+++++.+..||++.|++......+..+......+
T Consensus       139 ~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        139 VTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999998899999998877665555544444333

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.73  E-value=3.1e-16  Score=145.48  Aligned_cols=173  Identities=14%  Similarity=0.141  Sum_probs=144.6

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      .+|..+...+...+++.+..+......| .+.+++|++..+.+++.+...++..++.++.|+++||+ |||+++..+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            4566666666677777766665544444 45578999999999999999999999999999999998 999999999888


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..++.+++.+..                      +.+.+.+.|++.|++.+...+...+++.|.+|++      +|++.+
T Consensus        90 ~~~~~~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~  141 (406)
T PRK11551         90 FGLFSLATAQAW----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAV  141 (406)
T ss_pred             HHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHH
Confidence            888777766655                      6788889999999999999999999999999887      599999


Q ss_pred             HHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      ++++....+|+.+++.+++.+.+..+|+..|++.+++.++..+
T Consensus       142 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (406)
T PRK11551        142 SLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP  184 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888888999998887665444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.73  E-value=2.9e-16  Score=142.40  Aligned_cols=173  Identities=14%  Similarity=0.086  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~  106 (294)
                      ++...++..+........+|.|.. +++.+..+.+++.+...++..++.++.|+++||+ |||++++.+.++..++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            345555666665556666777765 5799999999999999999999999999999998 99999999988887777666


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  186 (294)
                      ......+                 ..+.+.+++++++.|++.+...+...+++.|++|++      +|++.+++++...+
T Consensus        82 ~~~~~~~-----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  138 (365)
T TIGR00900        82 PFVALLG-----------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRS  138 (365)
T ss_pred             HHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHH
Confidence            6543111                 126788889999999999999999999999999987      59999999999999


Q ss_pred             HHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       187 ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +|..++|.+++++.+..||++.|++.++..++..+...
T Consensus       139 ~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       139 LFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888999999887765555544333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.72  E-value=4.8e-16  Score=144.00  Aligned_cols=178  Identities=12%  Similarity=0.029  Sum_probs=146.2

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      +.++.+..+....+...++.......++.|+++++|.+..+.+++.+.+.+...+++++.|+++||+ |||++++.+.++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~   90 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG   90 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence            3455667777778888888777788899999999999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..++.+.+.+.....+.              ...+...+++.|++.|++.+...+....++.|.+|++      +|++..
T Consensus        91 ~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~  150 (399)
T PRK05122         91 CALSGLLYLLAGLLAAW--------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVI  150 (399)
T ss_pred             HHHHHHHHHHhhhhhcc--------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccch
Confidence            87776665543211000              0114567889999999999999999889999999887      599999


Q ss_pred             HHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHH
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMF  217 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~  217 (294)
                      +++....++|..+++.+++.+.+..||+..+++..+..+
T Consensus       151 ~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        151 SWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            998888899999999999988888899988776555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.72  E-value=6.5e-16  Score=143.58  Aligned_cols=158  Identities=13%  Similarity=0.101  Sum_probs=130.8

Q ss_pred             hHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 022608           37 AVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR  116 (294)
Q Consensus        37 ~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~  116 (294)
                      ....+...++. +++++|.+..+.++..+.+.++..++.++.|+++||+ |||++++.+.++..++.+......      
T Consensus        28 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~------   99 (406)
T PRK15402         28 ANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQ------   99 (406)
T ss_pred             hhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHc------
Confidence            33334444444 4578999999999999999999999999999999998 999999999988888887776655      


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 022608          117 PPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (294)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~  196 (294)
                                      +.+.+++.|++.|++.+...+...+++.|.+|++      +|++..++.+....+|..++|.++
T Consensus       100 ----------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~  157 (406)
T PRK15402        100 ----------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITALMANVALLAPLLGPLVG  157 (406)
T ss_pred             ----------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            6778888999999999988888899999999887      477888888777788999999999


Q ss_pred             hheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          197 VYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       197 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +++.+..+|++.|++.++..++..+...
T Consensus       158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK15402        158 AALIHVLPWRGMFVLFAALAALSFFGLW  185 (406)
T ss_pred             HHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence            9888888999999887776655554433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.71  E-value=5.2e-16  Score=143.34  Aligned_cols=171  Identities=12%  Similarity=0.117  Sum_probs=144.9

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.++.+.+..++.....+...+.+|. +++++|++..+.+++.+...++..++.++.|+++||+ |||+++..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            34555666666676766666666655 5678999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +.+++..+.                      +++.+++.|++.|++.+...+....++.|.++++      +|++.++.+
T Consensus        81 ~~~l~~~~~----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  132 (382)
T PRK10091         81 GNAMFTLSS----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGM  132 (382)
T ss_pred             HHHHHHHhC----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHH
Confidence            888887766                      7888999999999999988888888889998876      588899999


Q ss_pred             HHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHH
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      ..+..+|..+++.+++++.+..||++.|++.++..++..+.
T Consensus       133 ~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        133 VSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999888889999999887765554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.71  E-value=9.3e-16  Score=141.92  Aligned_cols=172  Identities=12%  Similarity=0.093  Sum_probs=140.4

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      .+|..+.+....++..+........+|.+ .+++|+|..+.+++.+.+.++..++.++.|+++||+ |||++++++.++.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            45566666666666666655555555544 578999999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.+.+....                      +.+.+++.|++.|++.+...+....+..|.++.+      +++...+
T Consensus        84 ~~~~~~~~~~~----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  135 (394)
T PRK11652         84 ILGTLVALFAH----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANS  135 (394)
T ss_pred             HHHHHHHHHHc----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHH
Confidence            88887776654                      6778889999999998887777778888888776      5888899


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      +++.+..++..++|.+++.+.+..||++.|++.++..++..+
T Consensus       136 ~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        136 LLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            999999999999999999888888999999887665544433

>TIGR00895 2A0115 benzoate transport

Probab=99.71  E-value=1.5e-15  Score=139.33  Aligned_cols=173  Identities=12%  Similarity=0.107  Sum_probs=140.2

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      .|+.+...+...+......+.. ....+++.+++|++..+.+++.+...++..++.++.|+++||+ |||+++..+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            3444444444445444444433 3445566678999999999999999999999999999999998 9999999998888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.+++....                      +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..+
T Consensus        93 ~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~  144 (398)
T TIGR00895        93 SVFTLLCALAT----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVG  144 (398)
T ss_pred             HHHHHHHHHcc----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHh
Confidence            88877766654                      6777888999999999999999999999999987      5999999


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      +++....+|..+++.+.+++.+..||+..|++.+++..+..++
T Consensus       145 ~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  187 (398)
T TIGR00895       145 LMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLL  187 (398)
T ss_pred             hHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHH
Confidence            9999999999999999999988899999888876544444333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.71  E-value=6.7e-16  Score=145.08  Aligned_cols=161  Identities=16%  Similarity=0.134  Sum_probs=135.9

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~  108 (294)
                      +..++..+..+.+...++.+. +++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+++..
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~~~  107 (434)
T PRK11663         30 LGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINILFGF  107 (434)
T ss_pred             HHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHHHHH
Confidence            334444444444455555554 57999999999999999999999999999999998 9999999999999888887777


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHH
Q 022608          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig  188 (294)
                      ..                      +.+.+.+.|++.|++.|...+....++.|++|++      +|++.+++++...++|
T Consensus       108 ~~----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g  159 (434)
T PRK11663        108 SS----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVG  159 (434)
T ss_pred             Hh----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHH
Confidence            65                      6788888899999999988899999999999987      5999999999999999


Q ss_pred             HHHHHHhhhheeeccchhhhhhHhHHHHHHH
Q 022608          189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       189 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  219 (294)
                      +.+++.+.+++.+.+||++.|++.++..++.
T Consensus       160 ~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        160 GALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            9999999999888899999998877654443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.71  E-value=5.1e-16  Score=147.16  Aligned_cols=171  Identities=12%  Similarity=0.216  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 022608           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (294)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i  104 (294)
                      ..+....++..+....... ..+.+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNV-AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHH
Confidence            3344444444444443433 44555678999999999999999999999999999999998 999999999999999888


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  184 (294)
                      ++....                      +.+.++++|++.|++.+...+...+++.|.+|++      +|+++.++++..
T Consensus        83 ~~~~~~----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~  134 (485)
T TIGR00711        83 LCGVAP----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLT  134 (485)
T ss_pred             HHhCcC----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHH
Confidence            877655                      7788899999999999999999999999999987      599999999999


Q ss_pred             HHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       185 ~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ..+|..++|.+++++.+..||++.|++.....++..+....
T Consensus       135 ~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  175 (485)
T TIGR00711       135 VLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF  175 (485)
T ss_pred             HHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999998877665555444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.71  E-value=1e-15  Score=142.98  Aligned_cols=166  Identities=13%  Similarity=0.159  Sum_probs=141.6

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      .+++......+..+...+..+.. .++.+++++++|++..+.+++.+...++..++.++.|+++||+ |||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            34455555555555555555443 4455677789999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..++.++..++.                      +.+.++++|++.|++.+...+....++.|.+|++      +|++..
T Consensus        93 ~~~~~~~~~~~~----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~  144 (426)
T PRK12307         93 YSVGTGLSGLAS----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKAS  144 (426)
T ss_pred             HHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhh
Confidence            999988887766                      7888999999999999999999999999999988      599999


Q ss_pred             HHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHH
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTF  214 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~  214 (294)
                      ++++.+..+|..+++.+.+.+.+..||++.|++..+
T Consensus       145 ~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        145 AFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            999999999999999998888888899999987543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.70  E-value=5e-16  Score=141.70  Aligned_cols=153  Identities=13%  Similarity=0.203  Sum_probs=134.9

Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 022608           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (294)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~  122 (294)
                      +...+++++++|++..+.+++.+...++..++.++.|+++||+ |||+++..+.++..++.+++.+..            
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------   80 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------   80 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence            3444567889999999999999999999999999999999998 999999999998888888877765            


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec
Q 022608          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (294)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~  202 (294)
                                +.+.++++|++.|++.+...+....++.|.+|++      +|++.+++.+...++|..+++.+.+.+.+.
T Consensus        81 ----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  144 (399)
T TIGR00893        81 ----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIH  144 (399)
T ss_pred             ----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence                      7888999999999999999999999999999987      599999999999999999999999988888


Q ss_pred             cchhhhhhHhHHHHHHHHHHHH
Q 022608          203 IGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       203 ~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      .+|++.|++.++..++..+...
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~  166 (399)
T TIGR00893       145 FSWQWAFIIEGVLGIIWGVLWL  166 (399)
T ss_pred             CCchHHHHHHHHHHHHHHHHhh
Confidence            8999999887776555444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.70  E-value=8.6e-16  Score=139.75  Aligned_cols=155  Identities=17%  Similarity=0.149  Sum_probs=130.3

Q ss_pred             HHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022608           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (294)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~  117 (294)
                      .|.. +.+.+++++++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+...++.       
T Consensus        19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-------   89 (377)
T TIGR00890        19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD-------   89 (377)
T ss_pred             Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence            4443 4456777889999999999999999999999999999999998 999999999999999998888776       


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 022608          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (294)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~  197 (294)
                                     +.+.++++|++.|++.+...+.....+.|.+|+       +|++..+++..+.++|..+++.+.+
T Consensus        90 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~  147 (377)
T TIGR00890        90 ---------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLIT  147 (377)
T ss_pred             ---------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHH
Confidence                           788899999999999988777777888888874       4899999999998999887666666


Q ss_pred             heeeccchhhhhhHhHHHHHHHHHHH
Q 022608          198 YIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       198 ~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      .+.+..||++.|.+.++..++..+..
T Consensus       148 ~~~~~~~~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890       148 SVINLEGVPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            66667799999998877665554433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.69  E-value=1.9e-15  Score=141.93  Aligned_cols=167  Identities=15%  Similarity=0.162  Sum_probs=120.6

Q ss_pred             HHHHHHhHHhhHHHHHHHhhhhcC---CCHHHHHH---HHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 022608           31 EVCEKLAVVGFNTNMISYLTTQLH---MPLTKAAN---TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (294)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i  104 (294)
                      .+++.+-... .++..+++.++++   .+..+.+.   +.+...++..++++++|+++||+ |||+++..+.+++.++.+
T Consensus        31 ~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~~  108 (432)
T PRK10406         31 NLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFGSL  108 (432)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            4444444443 4556667777774   55554333   34444555559999999999998 999999999999999988


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  184 (294)
                      +..++.++...              ....+..+.+.|++.|+|.|+..+...++++|.+|++      +|++..+..+.+
T Consensus       109 ~~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~~~~~~~~  168 (432)
T PRK10406        109 VIACLPGYETI--------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFYASFQYVT  168 (432)
T ss_pred             HHhhcCCchhH--------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHHHHHHHHH
Confidence            87765411000              0113456889999999999999999999999999988      589999988888


Q ss_pred             HHHHHHHHHHhhhhee--------eccchhhhhhHhHHHHHHH
Q 022608          185 MGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       185 ~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~~~  219 (294)
                      .+.|..+++.+...+.        ..+|||+.|++.++..++.
T Consensus       169 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        169 LIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            8888888776544332        2579999998876655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.69  E-value=2.2e-15  Score=143.52  Aligned_cols=167  Identities=13%  Similarity=0.185  Sum_probs=140.9

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~   97 (294)
                      +.+|+.+..+.+..++..+..+.. ..+.+++.+++|++..+.+++.+...++..++.++.|+++||+ |||++++.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLI-TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            345555555555555555555444 4445666788999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      +..++.+++.+..                      +.+.+.+.+++.|++.+...+....++.|.+|++      +|++.
T Consensus        94 ~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~  145 (496)
T PRK03893         94 LFSVGTLACGFAP----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKA  145 (496)
T ss_pred             HHHHHHHHHHHHh----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHH
Confidence            8888888877765                      7788899999999999999999999999999987      59999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHH
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTF  214 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~  214 (294)
                      .+.++...++|..+++.+.+++.+..+|++.|++..+
T Consensus       146 ~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            9999999999999999999999888999998876544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.69  E-value=3.5e-15  Score=137.98  Aligned_cols=164  Identities=11%  Similarity=0.092  Sum_probs=135.2

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~  108 (294)
                      ...+....+.......+|. +.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++.+.++..++.+.+..
T Consensus        10 ~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHHHH
Confidence            3444444554444455544 4567999999999999999999999999999999998 9999999999888888877766


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHH
Q 022608          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAA  188 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig  188 (294)
                      ..                      +.+.+++.|++.|++.+...+....++.|.+|++      +|++..++.+...++|
T Consensus        88 ~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~  139 (392)
T PRK10473         88 AE----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCII  139 (392)
T ss_pred             hC----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHH
Confidence            54                      6677788999999999988888999999999987      5999999999999999


Q ss_pred             HHHHHHhhhheeeccchhhhhhHhHHHHHHHHHH
Q 022608          189 ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       189 ~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      ..++|.+++.+.+..||++.|++.+++..+..++
T Consensus       140 ~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        140 PVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence            9999999888878889999888877665554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.69  E-value=2.5e-15  Score=137.11  Aligned_cols=159  Identities=15%  Similarity=0.193  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      .+......++....++...+.+|.++++++|+|..+.+++.+...++..++.++.|+++||+ |||++++++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            45555666666777777777777789999999999999999999999999999999999998 99999999999998888


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      +++....                     .+.+.+++.|++.|++.+. .+...++++|++|++      +|++..+++..
T Consensus        82 ~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~r~~~~~~~~~  133 (366)
T TIGR00886        82 LWAGLAV---------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKK------IQGTALGLAAG  133 (366)
T ss_pred             HHHHHHh---------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHh------hhhHHHHHHHH
Confidence            7776543                     0567788899999998664 456688999999987      59999999887


Q ss_pred             HHHHHHHHHHHhhhheee----------ccchhhhhhH
Q 022608          184 VMGAAILVAVTVLVYIQD----------NIGWGWGLGI  211 (294)
Q Consensus       184 ~~~ig~~~~~~~~~~l~~----------~~g~~~~f~~  211 (294)
                      ..++|..+++.+.+.+..          ..+|++.|++
T Consensus       134 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            777777777766655433          3479988843

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.69  E-value=4.7e-15  Score=137.36  Aligned_cols=174  Identities=14%  Similarity=0.028  Sum_probs=139.9

Q ss_pred             Ccch-HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHH-----HHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHH
Q 022608           20 GMIT-MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK-----AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT   93 (294)
Q Consensus        20 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~   93 (294)
                      +|++ ...+....++..+++......++.|++ ++|++..+     .+++.+...+...++.++.|+++||+ |||+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~   88 (408)
T PRK09874         11 NWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLL   88 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHH
Confidence            3443 455556777777877777788888875 58888654     37788889999999999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhh
Q 022608           94 IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (294)
Q Consensus        94 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (294)
                      .+.++..++.+++....                      +.+.+++.+++.|++.+ ..+....++.|.+|++      +
T Consensus        89 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~  139 (408)
T PRK09874         89 RSALGMGIVMVLMGLAQ----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRN------K  139 (408)
T ss_pred             HHHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------h
Confidence            99888888877766654                      67788889999998765 4566777888988877      5


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          174 TWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       174 rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      |++..+.++...++|..++|.+.+.+.+..+|++.|++.++..++..+...
T Consensus       140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  190 (408)
T PRK09874        140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTL  190 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999988888999999888776655544433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.69  E-value=3e-15  Score=142.89  Aligned_cols=176  Identities=11%  Similarity=0.077  Sum_probs=125.8

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      +++.....+...++..+.+|++..++|.|+++.+|++..+.........++..++.+++|+++||+ |||+++..+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344444444455567788889999999999888999998888888888888889999999999998 9999988887654


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.+.+....                   ...+...+++++++.+++.+...+....++.|.+|++      .|++..+
T Consensus       327 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~------~Rg~~~g  381 (490)
T PRK10642        327 FVLAIPAFILI-------------------NSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH------IRYSALA  381 (490)
T ss_pred             HHHHHHHHHHH-------------------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc------cchHHHH
Confidence            44333322211                   0113556667778778777777777788889999998      5999999


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSII  221 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~  221 (294)
                      +.+....+++.++|.+.+++.+..+ |+..+++..+..++.++
T Consensus       382 ~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~  424 (490)
T PRK10642        382 AAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI  424 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence            7555556677888988888776544 55555444444444433

>PRK03699 putative transporter; Provisional

Probab=99.68  E-value=4.8e-15  Score=137.42  Aligned_cols=174  Identities=11%  Similarity=0.131  Sum_probs=140.1

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      +++|..+...+..++.....+.....++. +.+++|+|..+.+++.+...++..++.+++|+++||+ |||+++..+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            44555666556666665555544444544 5678999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..++.++..+..                      +.+.+++.|++.|++.+...+....++.|.+|++      +|+...
T Consensus        82 ~~i~~~l~~~~~----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~  133 (394)
T PRK03699         82 MILAVAGLMFSH----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRL  133 (394)
T ss_pred             HHHHHHHHHHcc----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHH
Confidence            888888777655                      6778889999999999988888899999999876      588888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhee-eccchhhhhhHhHHHHHHHHHH
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQ-DNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~-~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      +..+....+|+.++|.+.+++. +..|||+.|.+.++..++..++
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        134 LFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            8888888889999998887765 4579999998777655544433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.68  E-value=4.4e-15  Score=147.01  Aligned_cols=151  Identities=15%  Similarity=0.109  Sum_probs=126.9

Q ss_pred             HHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 022608           42 NTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (294)
Q Consensus        42 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~  121 (294)
                      ...+.+++++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++++++++..++.+++.++.           
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~-----------  253 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ-----------  253 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            34455667778999999999999999999999999999999998 999999999998888888877765           


Q ss_pred             CccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee
Q 022608          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~  201 (294)
                                 +.+.++++|++.|+|.|+..+....+++|.+|++      .|+..+++++....+|.++++.++..+..
T Consensus       254 -----------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~  316 (742)
T TIGR01299       254 -----------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIP  316 (742)
T ss_pred             -----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       6788999999999999999999999999999987      69999999999999999998876544432


Q ss_pred             c-------------cchhhhhhHhHHHHHHHHH
Q 022608          202 N-------------IGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       202 ~-------------~g~~~~f~~~~~~~~~~~~  221 (294)
                      .             .+||+.+++.++..++.++
T Consensus       317 ~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll  349 (742)
T TIGR01299       317 HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIG  349 (742)
T ss_pred             hccchhccccccccccHHHHHHHHHHHHHHHHH
Confidence            2             3688877776665444433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.68  E-value=2.4e-15  Score=139.53  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=128.8

Q ss_pred             HHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022608           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (294)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~  117 (294)
                      ++.....+ +.+++++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..++.+...++.       
T Consensus        25 ~~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~-------   95 (393)
T PRK09705         25 LTSVGPLL-PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP-------   95 (393)
T ss_pred             hhccchhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc-------
Confidence            34444444 456789999999999999999999999999999999998 999999999999999999998876       


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 022608          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (294)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~  197 (294)
                                     ++..++++|++.|+|.+...+....++.|++| +      +|+++.+.+..+.++|..+++.+.+
T Consensus        96 ---------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~g~~~~~  153 (393)
T PRK09705         96 ---------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGLGAAITP  153 (393)
T ss_pred             ---------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence                           67788999999999999999998999999987 4      4899999999999999999999988


Q ss_pred             heeecc-chhhhhhHhHHHHHHH
Q 022608          198 YIQDNI-GWGWGLGIPTFAMFLS  219 (294)
Q Consensus       198 ~l~~~~-g~~~~f~~~~~~~~~~  219 (294)
                      ++.+.. +|+..+.+.++..++.
T Consensus       154 ~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        154 WLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHH
Confidence            877765 7998776554443333

>TIGR00897 2A0118 polyol permease family

Probab=99.67  E-value=9.9e-15  Score=135.72  Aligned_cols=171  Identities=13%  Similarity=0.154  Sum_probs=135.8

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      +-||++.......++..+..+....+++.++ +++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~~   87 (402)
T TIGR00897        10 GIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLLL   87 (402)
T ss_pred             CCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHH
Confidence            4456667777777777777776777788887 56899999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..++.+++.... .                 ...+.+.+.+.|++.|+|.+...+.....+.+.+|++      +|+++.
T Consensus        88 ~~~~~~~~~~~~-~-----------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~  143 (402)
T TIGR00897        88 WCVGHAAFIVFG-L-----------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAV  143 (402)
T ss_pred             HHHHHHHHHHHh-c-----------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHH
Confidence            888766543221 0                 0115677778899999988877777777888888877      599999


Q ss_pred             HHHHHHHHHHH-HHHHHhhhheeeccchhhhhhHhHHH
Q 022608          179 NWYYFVMGAAI-LVAVTVLVYIQDNIGWGWGLGIPTFA  215 (294)
Q Consensus       179 ~~~~~~~~ig~-~~~~~~~~~l~~~~g~~~~f~~~~~~  215 (294)
                      ++++.+.++|. .++|.+++++.+.+||+..++.....
T Consensus       144 g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       144 GWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99999999996 57898888888888876555544433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11043 putative transporter; Provisional

Probab=99.67  E-value=4.9e-15  Score=137.40  Aligned_cols=159  Identities=16%  Similarity=0.205  Sum_probs=130.8

Q ss_pred             hHHhhHHHHHHH--hhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022608           37 AVVGFNTNMISY--LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQ  114 (294)
Q Consensus        37 ~~~~~~~~l~~y--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~  114 (294)
                      .+++...++|.+  +++++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.++.....    
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~----   92 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE----   92 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc----
Confidence            333333444433  5678999999999999999999999999999999998 999999999888888877776655    


Q ss_pred             CCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 022608          115 LRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT  194 (294)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~  194 (294)
                                        +.+.+++.|++.|++.+...+...+++.|.++++      ++++..+..+....+|..++|.
T Consensus        93 ------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~  148 (401)
T PRK11043         93 ------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPL  148 (401)
T ss_pred             ------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                              6778888999999998887777788999999887      5777888888888899999999


Q ss_pred             hhhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          195 VLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       195 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +++++.+.+||++.|++..+..++..+..+
T Consensus       149 i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        149 LGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            999998889999999887766655544433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.67  E-value=3.3e-15  Score=137.06  Aligned_cols=155  Identities=14%  Similarity=0.165  Sum_probs=134.0

Q ss_pred             hhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022608           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (294)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~  119 (294)
                      .+.+.++.+. +++|++..+.+++.+...++..++.+++|+++||+ |||+++..+.++..++.+.+....         
T Consensus         9 ~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------   77 (377)
T PRK11102          9 MYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------   77 (377)
T ss_pred             HHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc---------
Confidence            3445666665 56899999999999999999999999999999998 999999999999888888877665         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                                   +.+.+.+.+++.|++.+...+...+++.|.+|++      +|++..++.+....+|..++|.+++.+
T Consensus        78 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l  138 (377)
T PRK11102         78 -------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWL  138 (377)
T ss_pred             -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         6778888999999999999899999999999887      599999999999999999999999998


Q ss_pred             eeccchhhhhhHhHHHHHHHHHHHH
Q 022608          200 QDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       200 ~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      .+..+|++.|++.++..++..+...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102        139 LVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHH
Confidence            8888999998887776655544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.67  E-value=5.9e-15  Score=140.40  Aligned_cols=175  Identities=9%  Similarity=0.066  Sum_probs=130.4

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      +++.+.......++..+..+.+.. +.+++++++|++..+.+++.+...++..++.+++|+++||+ |||+++..+.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            344444444545555555554433 34566789999999999999899999999999999999998 9999999998888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.++..+..                      +.+.+++.|++.|++.+... ....+++|++|++      +|+++.+
T Consensus       112 ~~~~~~~~~~~----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~------~rg~a~g  162 (476)
T PLN00028        112 APAVFCMSLVS----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK------IVGTANG  162 (476)
T ss_pred             HHHHHHHHHhc----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh------heeHHHH
Confidence            88877776655                      66778888999999887654 3456789999987      5999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhee----e-----ccchhhhhhHhHHHHHHHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQ----D-----NIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~----~-----~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ..+...++|+.+++.+.+.+.    +     ..|||+.|++.+++.++..+..++
T Consensus       163 ~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~  217 (476)
T PLN00028        163 IAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT  217 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            988777777777765554332    1     258999999887766555444333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.67  E-value=7e-16  Score=139.97  Aligned_cols=175  Identities=14%  Similarity=0.083  Sum_probs=153.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHH---HHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTN---MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      |.-+.++...++...++|.+.-+   ..+++.++.++|.++.+.+.+.+.+.+.++-.+.|.++||. +.|..+.+++++
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLil  103 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLIL  103 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHH
Confidence            34466777778888888876543   45788889999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..+..+++.++.                      +.+.+.+..++.|+.+|.-.|+....++.+++++|      ||+..
T Consensus       104 sai~nil~Gfs~----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~  155 (448)
T COG2271         104 SAIVNILFGFSP----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWW  155 (448)
T ss_pred             HHHHHHHHhhhh----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceE
Confidence            999999999877                      78888888999999999999999999999999995      99999


Q ss_pred             HHHHHHHHHHHHHHHHhh--hheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          179 NWYYFVMGAAILVAVTVL--VYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ++++.+.|+|+++.|.+.  +++..+.+|+..|++++++.++..++.+.
T Consensus       156 siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         156 SIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             EEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998  88888889999999999876554444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.67  E-value=5.4e-16  Score=147.08  Aligned_cols=174  Identities=10%  Similarity=0.006  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHhHHhhH---HHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFN---TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~---~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .+.++...++.....|...   ....+.+++++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~  105 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSA  105 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHH
Confidence            4444444444444444322   2234566789999999999999999999999999999999998 99999999888777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+......               |.  ...+.+.+++.|++.|++.+...+....+++|++|++      +||+++++
T Consensus       106 ~~~~~~~~~~---------------~~--~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi  162 (467)
T PRK09556        106 ICMLGFGASL---------------GS--GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGF  162 (467)
T ss_pred             HHHHHHHHHH---------------hc--ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEe
Confidence            7666655431               00  1127888999999999999999999999999999998      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeecc---chhhhhhHhHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNI---GWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~  221 (294)
                      +..+.++|+.+++.+..++....   +|+..|.+.+++.++..+
T Consensus       163 ~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i  206 (467)
T PRK09556        163 WNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGF  206 (467)
T ss_pred             eecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHH
Confidence            99999999999988876655432   588777776665544333

>PRK10133 L-fucose transporter; Provisional

Probab=99.67  E-value=1.2e-14  Score=136.96  Aligned_cols=154  Identities=13%  Similarity=0.044  Sum_probs=122.2

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      +....++.+....+...+........+| .+++++|++..+.++..+.+.++..+++++.|+++||+ |||+++..+.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~  100 (438)
T PRK10133         23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL  100 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence            3444555566666666666555544454 45899999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      +.++.+++....                   ...+++.+.++|++.|+|.|...+..++++.|..+++      ++...+
T Consensus       101 ~~~~~~l~~~~~-------------------~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~~  155 (438)
T PRK10133        101 YALGAALFWPAA-------------------EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRL  155 (438)
T ss_pred             HHHHHHHHHHHH-------------------hcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHHH
Confidence            999987764222                   0126788999999999999999999999999875554      355567


Q ss_pred             HHHHHHHHHHHHHHHHhhhhe
Q 022608          179 NWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l  199 (294)
                      +.++....+|..+++.+++.+
T Consensus       156 s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        156 NLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            788888888998888876543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.66  E-value=6.9e-15  Score=134.53  Aligned_cols=169  Identities=11%  Similarity=0.064  Sum_probs=130.8

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHH
Q 022608           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI-ASIIYQIGMICL  106 (294)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~-~~~~~~i~~i~~  106 (294)
                      ++..++..++.......++.|+++++|.+..+.+++.+.+.+...+.+++.|+++||+ ||||.++. +.++..++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3456677777777788899999999999999999999999999999999999999998 99887665 444445555555


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh--HHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK--YFNWYYFV  184 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~--~~~~~~~~  184 (294)
                      ..+.                      +++.+++.+++.+.+.+...+....+..|..|++.      |+.  ..+..+..
T Consensus        82 ~~~~----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~  133 (375)
T TIGR00899        82 AWNR----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQ  133 (375)
T ss_pred             Hhcc----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHH
Confidence            5544                      56777777888877777777777778888776552      433  35677777


Q ss_pred             HHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       185 ~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      .++|..++|.+++++.+..||++.|++.++..++..+..+.
T Consensus       134 ~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       134 ISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999988889999999887766555444433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.66  E-value=1.4e-14  Score=135.34  Aligned_cols=172  Identities=12%  Similarity=0.046  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      ++.+....+...+.. ++...+.+.+++++|++..+.+++.+...++..+++++.|++.||+ |||+++.++.++..++.
T Consensus         5 ~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            444445555555554 3444555677899999999999999999999999999999999998 99999999999999988


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      +++..+.                   ...+++.+.+.+++.|+|.|..++..++++.+..|++      ++++..+..+.
T Consensus        83 ~l~~~~~-------------------~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  137 (410)
T TIGR00885        83 FLFWPAA-------------------EIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQS  137 (410)
T ss_pred             HHHHHHH-------------------hhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHH
Confidence            7765443                   1126788889999999999999999999999998877      47888888888


Q ss_pred             HHHHHHHHHHHhhhheee--------------------------ccchhhhhhHhHHHHHHHHHH
Q 022608          184 VMGAAILVAVTVLVYIQD--------------------------NIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       184 ~~~ig~~~~~~~~~~l~~--------------------------~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      ..++|..++|.+.+.+..                          ..+|++.|.+.+++.++..++
T Consensus       138 ~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       138 FNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999988775532                          136999998777655544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.65  E-value=1.8e-14  Score=132.91  Aligned_cols=155  Identities=14%  Similarity=0.119  Sum_probs=133.9

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      |.++.++...++..+....+.+.+|.|++ ++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~~   83 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFAA   83 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            45777778888888888878888888875 6899999999999999999999999999999998 999999999999988


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +.+......                      +.+.+.++|++.|++.+...+.....+.+..+++      +|++.++.+
T Consensus        84 ~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  135 (381)
T PRK03633         84 GCAGLGLMV----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAY  135 (381)
T ss_pred             HHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHH
Confidence            888777665                      7788889999999999988887777778887776      599999999


Q ss_pred             HHHHHHHHHHHHHhhhheeeccchh
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGWG  206 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~~  206 (294)
                      +.+.++|..+|+.+.+.+.+...+.
T Consensus       136 ~~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        136 MMVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHHhcccccccch
Confidence            9999999999999998887654333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.65  E-value=9.7e-15  Score=131.27  Aligned_cols=166  Identities=17%  Similarity=0.326  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 022608           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (294)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~  105 (294)
                      .+....++..+..+......+.|.+ ++|.+..+.+++.+...+...++.++.|+++||+ |||+.+..+.++..++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence            3445667777777777777777764 6799999999999999999999999999999998 9999999999999998888


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 022608          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (294)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~  185 (294)
                      .....                      +.+.+.+.+++.|++.+...+...+++.|.+|++      +|++.+++.+...
T Consensus        81 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  132 (352)
T cd06174          81 LAFAS----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGF  132 (352)
T ss_pred             HHHhc----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHH
Confidence            77765                      6788899999999999999999999999999997      5999999999999


Q ss_pred             HHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       186 ~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      ++|..+++.+.+.+.+..+|++.+++.++...+..+
T Consensus       133 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (352)
T cd06174         133 GLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL  168 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            999999999999998888899988887766555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.65  E-value=4.8e-15  Score=138.87  Aligned_cols=142  Identities=20%  Similarity=0.294  Sum_probs=121.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhH
Q 022608           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (294)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (294)
                      .+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.++.....                   ...+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~  127 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAA-------------------FALSV  127 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhc-------------------cccch
Confidence            3389999999999999999999999999998 999999999999988888776544                   12245


Q ss_pred             HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhh---hheeeccchhhhhhH
Q 022608          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL---VYIQDNIGWGWGLGI  211 (294)
Q Consensus       135 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~---~~l~~~~g~~~~f~~  211 (294)
                      +.++++|++.|+|.+...+....+++|.+|++      +|++.+++++.+.++|..+++.+.   ....+..+|++.|++
T Consensus       128 ~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~  201 (481)
T TIGR00879       128 EMLIVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGL  201 (481)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHH
Confidence            68889999999999999999999999999988      599999999999999999999998   666677899999998


Q ss_pred             hHHHHHHHHHH
Q 022608          212 PTFAMFLSIIA  222 (294)
Q Consensus       212 ~~~~~~~~~~~  222 (294)
                      .++..++.++.
T Consensus       202 ~~~~~~~~~~~  212 (481)
T TIGR00879       202 QLIPAGLLFLG  212 (481)
T ss_pred             HHHHHHHHHHH
Confidence            65554444333

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.64  E-value=2e-15  Score=137.42  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=131.1

Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 022608           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (294)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  123 (294)
                      ...+++++++|++..+.+++.+...++..++.++.|+++||+ |||+++..+.++..++.+++....             
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-------------   81 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST-------------   81 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh-------------
Confidence            344577889999999999999999999999999999999998 999999999999988888887766             


Q ss_pred             cccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-Hhhhheeec
Q 022608          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV-TVLVYIQDN  202 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~-~~~~~l~~~  202 (294)
                               +.+.+++.+++.|++.+...+...+++.|.+|++      +|++..++.+.+.++|..+++ .+.+.+.+.
T Consensus        82 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  146 (379)
T TIGR00881        82 ---------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL  146 (379)
T ss_pred             ---------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence                     7788899999999999999999999999999987      599999999999999999999 566666677


Q ss_pred             cchhhhhhHhHHHHHHHHHHHH
Q 022608          203 IGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       203 ~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      .+|++.|++.+++.++..+..+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881       147 YSWHWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             CCchhHHHHHHHHHHHHHHHHh
Confidence            8999998877765554433333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.64  E-value=2.4e-14  Score=132.87  Aligned_cols=160  Identities=16%  Similarity=0.092  Sum_probs=129.3

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .++.+....++..+........++.. .++++.+..+.+++.+.+.+...++.+++|+++||+ |||++++++.++..++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~   81 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG   81 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence            44555666666666554444445544 568899999999999999999999999999999998 9999999999988887


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      .+.+....                      +.   ++.|++.|++.+...|...+++.|++|++      +|+++.++.+
T Consensus        82 ~~~~~~~~----------------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~  130 (393)
T PRK11195         82 CLLMLFGI----------------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWME  130 (393)
T ss_pred             HHHHHHHH----------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHH
Confidence            77665543                      22   67788999999999999999999999987      6999999999


Q ss_pred             HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHH
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~  216 (294)
                      ...++|..+||.+++++.+. .|+..+.+.+...
T Consensus       131 ~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~  163 (393)
T PRK11195        131 GSTIAAILLGTVLGGALADP-HAEAALAVCALIY  163 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            99999999999999988764 3665555544433

>PRK09952 shikimate transporter; Provisional

Probab=99.63  E-value=2e-14  Score=135.31  Aligned_cols=177  Identities=10%  Similarity=0.066  Sum_probs=124.4

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhc--CCCHHHHHHHH-----HHHHHHHhhhHHHHHHHHHhhcchhHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL--HMPLTKAANTL-----TNFGGTGSLTPLIGAFVADAYAGRFWT   91 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Grr~~   91 (294)
                      .+++..+..++..+++.+-...+....+.++.+++  +.++.. +++.     ++..++..+++++.|+++||+ |||++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~   96 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence            44555555555566665555444334444555554  666653 4332     234455668888899999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 022608           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (294)
Q Consensus        92 l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  171 (294)
                      ++.+.+++.++.+++.++.++...              .......+++.|++.|++.|+..+....++.|.+|++     
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~-----  157 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFSTI--------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN-----  157 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHH--------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC-----
Confidence            999999999998888876511000              0001235788999999999999999999999999998     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhhhee--------eccchhhhhhHhHHHHH
Q 022608          172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMF  217 (294)
Q Consensus       172 ~~rg~~~~~~~~~~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~  217 (294)
                       +|+...+..+.+..+|..++..+...+.        ..+|||..|++.++..+
T Consensus       158 -~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        158 -KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence             5899988888888888888876655443        25799999987766543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.63  E-value=7.8e-15  Score=138.86  Aligned_cols=147  Identities=10%  Similarity=0.134  Sum_probs=126.6

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 022608           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (294)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (294)
                      +++++..+.+.+.+.+.+++.++++++|+++||+ |||+++..+.++..++.++.....                    .
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------------~  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAA--------------------G  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHH--------------------H
Confidence            6889999999999999999999999999999998 999999999988888777665432                    0


Q ss_pred             hhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec-cchhhhhh
Q 022608          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN-IGWGWGLG  210 (294)
Q Consensus       132 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~-~g~~~~f~  210 (294)
                      .+.+.+++.|++.|++.+...+....+++|++|++      +|+++.++++.+.++|..+++.+.+++.+. .||+..|+
T Consensus       129 ~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~  202 (465)
T TIGR00894       129 GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFY  202 (465)
T ss_pred             cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehh
Confidence            14567888999999999999999999999999988      599999999999999999999999998887 49999999


Q ss_pred             HhHHHHHHHHHHHHH
Q 022608          211 IPTFAMFLSIIAFLI  225 (294)
Q Consensus       211 ~~~~~~~~~~~~~~~  225 (294)
                      +.++..++..++.+.
T Consensus       203 i~~~~~~~~~~~~~~  217 (465)
T TIGR00894       203 VFGIVGCAWSLLWFV  217 (465)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            887765555444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.63  E-value=3.5e-14  Score=131.67  Aligned_cols=176  Identities=14%  Similarity=0.092  Sum_probs=130.1

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      +++..+..+...+.....++.+..++|.|+++++|++..+++.+.+...+...++.+++|+++||+ |||+.+..+.+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~  292 (393)
T PRK15011        214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG  292 (393)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence            334444444444444444555667889999989999999999888887777888899999999998 9999888776555


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .+.........                      +.+.+.+.+++.+++.|...+....+..|.+|++       +++..+
T Consensus       293 ~~~~~~~~~~~----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-------~g~~~~  343 (393)
T PRK15011        293 VCFYAGMLMAH----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-------AGSATT  343 (393)
T ss_pred             HHHHHHHHHHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cchHHH
Confidence            54433332222                      4455556666666666666666677888988853       888999


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      .++...++|..+++.+.+.+.+..||+..|++..+..+++++..+.
T Consensus       344 ~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        344 LYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9888899999999999999999889999988877777666655543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.63  E-value=1.8e-14  Score=137.60  Aligned_cols=174  Identities=16%  Similarity=0.121  Sum_probs=123.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHH-HHH-----HHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK-AAN-----TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA   95 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~   95 (294)
                      +..+...+..+++.+-+. +..+..+++.++++.+... ..+     +.++..++..+++++.|+++||+ |||+++.++
T Consensus        16 ~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~   93 (490)
T PRK10642         16 KAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT   93 (490)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence            344444455566555443 3445556777777533211 111     24667788889999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhh
Q 022608           96 SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTW  175 (294)
Q Consensus        96 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg  175 (294)
                      .+++.++.++++++.++..+              ....+..+.++|++.|+|.|+..+....+++|++|++      +||
T Consensus        94 ~~l~~i~~~~~a~~~~~~~~--------------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg  153 (490)
T PRK10642         94 IVIMSISTFCIGLIPSYATI--------------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRG  153 (490)
T ss_pred             HHHHHHHHHHHHhcccHHHH--------------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCc
Confidence            99999999988876511000              0001124788999999999999999999999999988      599


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhee--------eccchhhhhhHhHHHHH
Q 022608          176 KYFNWYYFVMGAAILVAVTVLVYIQ--------DNIGWGWGLGIPTFAMF  217 (294)
Q Consensus       176 ~~~~~~~~~~~ig~~~~~~~~~~l~--------~~~g~~~~f~~~~~~~~  217 (294)
                      ...++.+.+..+|..+++.+...+.        ..+|||+.|++.++..+
T Consensus       154 ~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        154 FMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence            9999888877778777765543321        35799999998665433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.63  E-value=1.5e-14  Score=136.97  Aligned_cols=151  Identities=14%  Similarity=0.180  Sum_probs=120.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCCCCCccccccccch
Q 022608           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL-PQLRPPPCEGEQVCQEANKG  132 (294)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  132 (294)
                      +.+..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+...+.... ...           ...+..
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~-----------~~~~~~  118 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSI-----------GPDNTG  118 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccccc-----------cccchh
Confidence            88999999999999999999999999999998 99999999999988887766653200 000           000112


Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe--------eeccc
Q 022608          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI--------QDNIG  204 (294)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l--------~~~~g  204 (294)
                      ....++++|++.|++.|...+...++++|++|++      +|++.++..+.+..+|..+++.++..+        .+..|
T Consensus       119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  192 (479)
T PRK10077        119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG  192 (479)
T ss_pred             HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence            3567789999999999999999999999999988      599999999999999999888765433        24568


Q ss_pred             hhhhhhHhHHHHHHHHHH
Q 022608          205 WGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       205 ~~~~f~~~~~~~~~~~~~  222 (294)
                      ||+.|++.++..++..+.
T Consensus       193 Wr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        193 WRYMFASEAIPALLFLML  210 (479)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999998876665554433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.63  E-value=2e-14  Score=135.98  Aligned_cols=150  Identities=12%  Similarity=0.078  Sum_probs=124.4

Q ss_pred             HHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccc
Q 022608           46 ISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQV  125 (294)
Q Consensus        46 ~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~  125 (294)
                      ...+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.+++..+.               
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------  105 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS---------------  105 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence            3455678999999999999999999999999999999998 999999999988888888776655               


Q ss_pred             cccccchhHHHHHH-HHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccc
Q 022608          126 CQEANKGQVAILYV-SLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG  204 (294)
Q Consensus       126 ~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g  204 (294)
                             +.+.+++ .|++.|++.+...+....++.+.++ +      +|++..++.+.+..+|..++|.+.+.+.+.+|
T Consensus       106 -------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892       106 -------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-R------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             -------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-h------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence                   5555544 4678899988766666778889886 3      49999999999999999999999999888899


Q ss_pred             hhhhhhHhHHHHHHHHHHHHH
Q 022608          205 WGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       205 ~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      |++.|++.+++.++..+..++
T Consensus       172 wr~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       172 WRGSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH
Confidence            999999988776655444333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.63  E-value=1.4e-14  Score=131.61  Aligned_cols=181  Identities=17%  Similarity=0.170  Sum_probs=148.6

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc-chhHHHHH-HHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTITI-ASII   98 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~l~~-~~~~   98 (294)
                      -|.+|.+.+..++..+.-|++..|.|.|+.|..|+|..++++..+.+..+...+++++||+|||++ |||..+-+ .++.
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            367888999999999999999999999999999999999999999999999999999999999998 77755443 3444


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..++.+......                    +.++.+..+..+.+|+-..+.+-.+.....|..|++      ..|++.
T Consensus       331 i~~~~~~~w~~~--------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~------AaGtA~  384 (448)
T COG2271         331 ITASLVLYWLAP--------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK------AAGTAT  384 (448)
T ss_pred             HHHHHHHHHcCC--------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh------hccchh
Confidence            444444444432                    236777788888888888888878888889998887      589999


Q ss_pred             HHHHHHHHH-HHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 022608          179 NWYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       179 ~~~~~~~~i-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      |...++..+ |..++....+++.+.+||...|.+..+..+++.+++++..
T Consensus       385 Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         385 GFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             chhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            998888888 8888888899999999999999887777766666555544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.62  E-value=5.6e-15  Score=137.88  Aligned_cols=172  Identities=14%  Similarity=0.188  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~  106 (294)
                      ++...++..+........+|.+. ++++.+..+.+++.+...+...+++++.|+++||+ |||+++..+.++..++.+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         22 VFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHH
Confidence            34445555555554555566665 46788999999999999999999999999999998 99999998887777766555


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  186 (294)
                      .......                 ..+.+.+++.+++.|++.+...+...+++.|.+|++      +|++..+..+...+
T Consensus       100 ~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  156 (417)
T PRK10489        100 ALNAFLP-----------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVR  156 (417)
T ss_pred             HHHHHcC-----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHh
Confidence            4321000                 115677778899999988888888888999999887      58999999999999


Q ss_pred             HHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHH
Q 022608          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       187 ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      +|..+||.+++.+.+..+|++.|++.++..++..+..
T Consensus       157 ~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        157 LGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888899999888776655554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.62  E-value=5.2e-14  Score=134.74  Aligned_cols=143  Identities=17%  Similarity=0.173  Sum_probs=115.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchh
Q 022608           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (294)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (294)
                      +.+..+.+++.+...++..++.+++|+++||+ |||+++.++.++..++.++..++.+.                .+..+
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~~~~v~~~~~~~~~~~----------------~~~~~  114 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELIIMIIATVASGLSPGS----------------SPKSV  114 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHccCc----------------ccchH
Confidence            45667788999999999999999999999998 99999999999999888777664310                01113


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee------------
Q 022608          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD------------  201 (294)
Q Consensus       134 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~------------  201 (294)
                      ...++++|++.|++.|+..+..+.+++|.+|++      .|++..++++....+|..+++.+...+..            
T Consensus       115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  188 (502)
T TIGR00887       115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE  188 (502)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            678999999999999999999999999999998      59999999999999999888877653311            


Q ss_pred             -----------ccchhhhhhHhHHHHHHH
Q 022608          202 -----------NIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       202 -----------~~g~~~~f~~~~~~~~~~  219 (294)
                                 ..+||+.|.+.++..++.
T Consensus       189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~  217 (502)
T TIGR00887       189 ASCTGSCVPAVDYMWRILIGFGAVPALLA  217 (502)
T ss_pred             ccccccccchhcccHHHHHHHHHHHHHHH
Confidence                       237999887766554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.62  E-value=8.7e-14  Score=130.78  Aligned_cols=179  Identities=13%  Similarity=0.010  Sum_probs=129.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhh-hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      |.++. ....+...+......+.+...+.+ ++|++..+.+++.++..+.+.++.++.|++.||+ |.|+++.++.++..
T Consensus        34 r~l~~-s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWI-SVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            34443 334444455545555555566554 7999999999999999999999999999999998 99999999999988


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +.++...++...                 ...+++.+++.+++.|++ +...+.....++++||++      +||++.++
T Consensus       112 i~~~~~~~a~~~-----------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~------~rG~A~Gi  167 (462)
T PRK15034        112 IPCVWLGIAVQN-----------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA------KQGSALGI  167 (462)
T ss_pred             HHHHHHHHHHcc-----------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh------HhHHHHHH
Confidence            888877765100                 012788999999999998 667788899999999998      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhhee-----e-------------ccchhhhhhHhHHHHHHHHHHHHHh
Q 022608          181 YYFVMGAAILVAVTVLVYIQ-----D-------------NIGWGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~-----~-------------~~g~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                      +....++|..+++.+.+.+.     .             ..+|+..+++..++.++..+..++.
T Consensus       168 ~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        168 NGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            87666777766555443321     1             3346666666655555554444443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.61  E-value=2.1e-14  Score=135.70  Aligned_cols=152  Identities=14%  Similarity=0.110  Sum_probs=120.5

Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 022608           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (294)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  123 (294)
                      ...+|++++ |++..+.+++.+...++..+++++.|+++||+ |||++++++.++..++.+.+.+...            
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~------------  115 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW------------  115 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc------------
Confidence            445677777 99999999999999999999999999999998 9999999999888888877765420            


Q ss_pred             cccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHH-HHHHhhhheeec
Q 022608          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL-VAVTVLVYIQDN  202 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~-~~~~~~~~l~~~  202 (294)
                            ...+.+.+++.+++.|++.+...+.....+.|++|++      +|++.+++++.+.++|+. .+|.....+...
T Consensus       116 ------~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  183 (452)
T PRK11273        116 ------ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF  183 (452)
T ss_pred             ------ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence                  0115667788899999999988888888899999887      599999999999998874 455543333233


Q ss_pred             cchhhhhhHhHHHHHHHHH
Q 022608          203 IGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       203 ~g~~~~f~~~~~~~~~~~~  221 (294)
                      .||++.|++.++..++..+
T Consensus       184 ~gw~~~f~i~~~~~~~~~~  202 (452)
T PRK11273        184 NDWHAALYMPAFAAILVAL  202 (452)
T ss_pred             ccHHHHHHHHHHHHHHHHH
Confidence            4899999887765554433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.61  E-value=5.4e-14  Score=130.93  Aligned_cols=174  Identities=7%  Similarity=-0.018  Sum_probs=139.2

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHH-HHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK-AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~   97 (294)
                      +.|+....++++..+..-.-- ..++..+|+++++|++..+ .+.+.+++..++.++.+++|+++||+ |.|+++.++.+
T Consensus        23 ~~W~~~~~~lC~fGF~~e~R~-n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l  100 (511)
T TIGR00806        23 KSWRVLVLYLCFYGFMAQFRP-GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQAL  100 (511)
T ss_pred             cchhHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence            457655543333222111111 2355677888999999999 99999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      ...+..+++.++.                      +...+.+.|++.|++.|... ....++..++|++      +|+++
T Consensus       101 ~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~ra  151 (511)
T TIGR00806       101 SFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRA  151 (511)
T ss_pred             HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHH
Confidence            9999998888876                      78889999999999999999 8999999999998      59999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccchhhhhh---HhHHHHHHHHHHHH
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLG---IPTFAMFLSIIAFL  224 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~---~~~~~~~~~~~~~~  224 (294)
                      .+++..+..+|.++++.++++ ...+||+.-+.   +......+++++.+
T Consensus       152 tsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~  200 (511)
T TIGR00806       152 AAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLAL  200 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988 55678885433   33334444444433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.60  E-value=1.2e-14  Score=142.53  Aligned_cols=200  Identities=14%  Similarity=0.166  Sum_probs=147.6

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      .++.++..+....+......++.......++++++++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~  108 (633)
T TIGR00805        30 KIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIM  108 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHH
Confidence            344444444444555555556666666777889999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCC----------------CCCCCCCCc-----------ccccccc--chhHHHHHHHHHHHHHhccC
Q 022608          100 QIGMICLTISAILPQ----------------LRPPPCEGE-----------QVCQEAN--KGQVAILYVSLLLAALGSGG  150 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~----------------~~~~~~~~~-----------~~~~~~~--~~~~~~~~~~~~l~g~g~g~  150 (294)
                      .++.++.++...+..                .....|.+.           ..|....  ...+..++++|++.|+|.+.
T Consensus       109 ~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~  188 (633)
T TIGR00805       109 GLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP  188 (633)
T ss_pred             HHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc
Confidence            999998876542110                011223210           0222211  12356778999999999999


Q ss_pred             cchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeecc----------------------chhhh
Q 022608          151 IRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI----------------------GWGWG  208 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~----------------------g~~~~  208 (294)
                      ..+...+++.|.+|++      +|+...++++.+..+|..+|+++++++.+.+                      +|+..
T Consensus       189 ~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~  262 (633)
T TIGR00805       189 IFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG  262 (633)
T ss_pred             chhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence            9999999999999998      5999999999999999999999988766432                      26667


Q ss_pred             hhHhHHHHHHHHHHHHHh
Q 022608          209 LGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       209 f~~~~~~~~~~~~~~~~~  226 (294)
                      |++.+++.++..+.++..
T Consensus       263 Fli~g~l~~l~~v~l~~~  280 (633)
T TIGR00805       263 FLICGGVALLTSIPFFFF  280 (633)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            777666555544444333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.60  E-value=6.7e-14  Score=132.74  Aligned_cols=176  Identities=13%  Similarity=-0.003  Sum_probs=130.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.++.+.+..++....+++...++|.|+++.+|++..++++......++..++.+++|+++||+ |||+.+.....+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            3466666777777777788888999999999999999999999999999999999999999998 998877665444433


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +........                    ..+.....+.+++.|+..............|.+|++      .+|++.+..
T Consensus       337 ~~~~~~~~~--------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~------~~g~a~gi~  390 (467)
T PRK09556        337 IFTLGVYQH--------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK------AIGVANGIK  390 (467)
T ss_pred             HHHHHHHHh--------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh------hHHHHHHHH
Confidence            332222211                    013444555666666544333333345667999987      599999999


Q ss_pred             HHHHHH-HHHHHHHhhhheee------------ccchhhhhhHhHHHHHHHHHHHH
Q 022608          182 YFVMGA-AILVAVTVLVYIQD------------NIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       182 ~~~~~i-g~~~~~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +...++ |+.++|.+.|++.+            ..||+..|++..++.+++++..+
T Consensus       391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            998886 77899999999988            56899999887777766655544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.59  E-value=4.1e-14  Score=133.10  Aligned_cols=153  Identities=12%  Similarity=0.087  Sum_probs=123.8

Q ss_pred             HHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 022608           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (294)
Q Consensus        45 l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~  124 (294)
                      ..+++++ .|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++......            
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc------------
Confidence            4456665 599999999999999999999999999999998 99999999988888877765543200            


Q ss_pred             ccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh-eeecc
Q 022608          125 VCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVY-IQDNI  203 (294)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~-l~~~~  203 (294)
                            ..+...+.+.+++.|++.+...+.....+.|++|++      +|++++++++...++|+.+++.+.+. +....
T Consensus       115 ------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  182 (438)
T TIGR00712       115 ------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFN  182 (438)
T ss_pred             ------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence                  114566778899999999998888899999999988      59999999999999999998877664 43456


Q ss_pred             chhhhhhHhHHHHHHHHHHH
Q 022608          204 GWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       204 g~~~~f~~~~~~~~~~~~~~  223 (294)
                      +|+..|++.+++.++..+..
T Consensus       183 ~w~~~f~~~~~~~~i~~~~~  202 (438)
T TIGR00712       183 DWHAALYFPAICAIIVALFA  202 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            89999998777665544333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.58  E-value=1.5e-13  Score=127.47  Aligned_cols=178  Identities=7%  Similarity=-0.101  Sum_probs=130.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.+|.+....++...++..+.++++.|+++++|++..+.+++.+...+...+++++.|+++||+ |||+.++.+.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            3567777788888888888889999999999999999999999999999999999999999998 999999887666655


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +..........+..              .......+.+.+++.+++.+...+....+..|..++        ++..++..
T Consensus        81 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~  138 (396)
T TIGR00882        81 LFAPFFIYVFGPLL--------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKA  138 (396)
T ss_pred             HHHHHHHHHhhhHH--------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchh
Confidence            44332211100000              000233455667788888888888877777664221        34455666


Q ss_pred             HHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHH
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      ....++|..++|.+++.+.+ .+|+..|++.++..++..+..
T Consensus       139 ~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~  179 (396)
T TIGR00882       139 RMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLL  179 (396)
T ss_pred             hhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHH
Confidence            67778999999999887765 589999988777665544333

>TIGR00898 2A0119 cation transport protein

Probab=99.58  E-value=4.3e-14  Score=135.01  Aligned_cols=145  Identities=17%  Similarity=0.249  Sum_probs=125.4

Q ss_pred             HHhhhhcCCC---HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 022608           47 SYLTTQLHMP---LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (294)
Q Consensus        47 ~yl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  123 (294)
                      +.+.++++++   ..+.++..+++.++..++.++.|+++||+ |||++++++.++..++.++..++.             
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------  178 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------  178 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            4456789998   89999999999999999999999999998 999999999998888888777665             


Q ss_pred             cccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeecc
Q 022608          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~  203 (294)
                               +++.+++.|++.|++.+...+....++.|.+|++      +|+...+.+..+..+|.++++.++..+.+  
T Consensus       179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--  241 (505)
T TIGR00898       179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD--  241 (505)
T ss_pred             ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence                     7888999999999999999999999999999988      58999999888899999999988766543  


Q ss_pred             chhhhhhHhHHHHHHHHHHH
Q 022608          204 GWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       204 g~~~~f~~~~~~~~~~~~~~  223 (294)
                       |++.|++.++..++..+..
T Consensus       242 -wr~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       242 -WRWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             -HHHHHHHHHHHHHHHHHHH
Confidence             9998888777655554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.58  E-value=1.4e-13  Score=129.30  Aligned_cols=173  Identities=14%  Similarity=0.098  Sum_probs=121.2

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHH-HHHHHH-----HHhhhHHHHHHHHHhhcchhHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANT-LTNFGG-----TGSLTPLIGAFVADAYAGRFWTIT   93 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~G~laDr~~Grr~~l~   93 (294)
                      +++....+++..+++.+-...+ ....+.++++++.+..+.+.. .+....     ...+++++.|+++||+ |||++++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~   90 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLI   90 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHH
Confidence            3445555555555555554444 445557778888877765433 222222     2246788999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhh
Q 022608           94 IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK  173 (294)
Q Consensus        94 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (294)
                      .+.++..++.+++.++.++..+              .......++++|++.|++.+...+....+++|++|++      +
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~  150 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATI--------------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG------R  150 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHH--------------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc------c
Confidence            9999999998888775411000              0000124688999999999999998899999999998      5


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhe--------eeccchhhhhhHhHH
Q 022608          174 TWKYFNWYYFVMGAAILVAVTVLVYI--------QDNIGWGWGLGIPTF  214 (294)
Q Consensus       174 rg~~~~~~~~~~~ig~~~~~~~~~~l--------~~~~g~~~~f~~~~~  214 (294)
                      |++..+++....++|..+++.+++.+        .+.+|||+.|++..+
T Consensus       151 rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            99999998887777777776665543        246799999987543

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.58  E-value=3.3e-13  Score=125.18  Aligned_cols=175  Identities=9%  Similarity=0.053  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhhcchhHHHH-HHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTIT-IASIIYQ  100 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~-~~~~~~~  100 (294)
                      ..+.+++..++.+++.......++.|+++++|+|..+.+++.+...+ ...++++++|+ +||+ ||||.++ .+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~   93 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV   93 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence            34555666788888888888899999999999999999999876655 44455555666 9998 9988755 4444444


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++..+..++.                      +.+.+.+.+.+.+...+...+....+..|..++++    +..+...++
T Consensus        94 ~~~~~~~~~~----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  147 (393)
T PRK15011         94 LACTLFAWNR----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKTG----REAVMFSSF  147 (393)
T ss_pred             HHHHHHHHhh----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc----chHHHHHHH
Confidence            5555554444                      45555444433333334556677777777665542    012445578


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      .+.+.++|..++|.+++++.+.+||+..|++.++..++..+..+.
T Consensus       148 ~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        148 LRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            888899999999999999998899999998887765555444433

>PRK03699 putative transporter; Provisional

Probab=99.57  E-value=1.5e-13  Score=127.45  Aligned_cols=170  Identities=16%  Similarity=0.128  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .++.+.+..++.....+.+..++|.|+++.+|+|..+++.+.+.+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence            444455555666667778889999999999999999999999999999999999999999998 9999888777665555


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      ..+.....                      +...+.+..++.|++.+...+....+..|..|.+       ++...++.+
T Consensus       285 ~~~~~~~~----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~  335 (394)
T PRK03699        285 MYLFVNTD----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFIL  335 (394)
T ss_pred             HHHHHHcC----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHH
Confidence            44433322                      3333444556677777777777777778877654       455677777


Q ss_pred             HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHH
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      ...++|+.++|.+.+++.+..|++..+++..++..++++.
T Consensus       336 ~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        336 TCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            8889999999999999999899998888777766555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.56  E-value=1.7e-13  Score=124.54  Aligned_cols=185  Identities=14%  Similarity=0.046  Sum_probs=149.8

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      .++|+++... ..+...+..+.+.+.+..++++++|+|..|.+++..+..+...+..++-|.+.||+ |.|++..++.++
T Consensus        11 ~~~~~L~~S~-~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l   88 (417)
T COG2223          11 IARRNLWLST-LAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLL   88 (417)
T ss_pred             chhHHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHH
Confidence            3445555444 44555566666677888888999999999999999999999999999999999998 999999999998


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      .++-.+.++++.                   +..+++.+++..++.|++.+ ..+...+++++.||++      ++|.+.
T Consensus        89 ~~IP~~~~~~a~-------------------~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~------~qG~Al  142 (417)
T COG2223          89 LLIPCLGLAFAV-------------------TYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKE------KQGLAL  142 (417)
T ss_pred             HHHHHHHHHHHc-------------------cCCchHHHHHHHHHHhcccc-eehcccccccccCChh------hhhHHH
Confidence            888888888776                   23355788888889898765 4557789999999998      699999


Q ss_pred             HHHHHHHHHHHHHHHHhhhheeeccc---hhhhhhHhHHHHHHHHHHHHHhccceec
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQDNIG---WGWGLGIPTFAMFLSIIAFLIGYPLYRN  232 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~  232 (294)
                      +++- ..|+|..+...+++.+....|   |+....+..+.+++..+.+++..+..++
T Consensus       143 GI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         143 GIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             HHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence            9988 889999999999998888888   8988888877777766666665544433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.56  E-value=2e-13  Score=126.44  Aligned_cols=169  Identities=12%  Similarity=0.091  Sum_probs=129.2

Q ss_pred             HHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 022608           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (294)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~  110 (294)
                      ..+..+.+.....+++.|+.+ .|++  ..+.....+.++..++.++.|++.||+ |+|+.+..+..+..++.+.+....
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~  300 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc
Confidence            334455566666778888764 4553  445556677778888999999999998 999999888877777766665543


Q ss_pred             hcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 022608          111 ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAIL  190 (294)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~  190 (294)
                                            +.+.+.+..++.|++.+...+.......|.+|++      +|++..++++...++|..
T Consensus       301 ----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~  352 (399)
T PRK05122        301 ----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLG  352 (399)
T ss_pred             ----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHH
Confidence                                  4555667778889998888877777888888876      699999999999999999


Q ss_pred             HHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcccee
Q 022608          191 VAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYR  231 (294)
Q Consensus       191 ~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  231 (294)
                      +++.+.+++.+..||+..|++.+++.+++++......++.+
T Consensus       353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999988889999998888777766655554444333

>PRK09952 shikimate transporter; Provisional

Probab=99.56  E-value=3.7e-13  Score=126.72  Aligned_cols=180  Identities=16%  Similarity=0.126  Sum_probs=127.8

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      ++....++...++..+.+|...++++.|+++.+|++......+.........++.++.|+++||+ |||+++..+.++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~  327 (438)
T PRK09952        249 PGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGT  327 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            33444444566777788888889999999989999988766666666777788889999999998 99999888876655


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+.+.....                  .......+.+..++.+++.+...+...++++|.+|++      .|++..++
T Consensus       328 ~~~~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~------~r~tg~g~  383 (438)
T PRK09952        328 LSAFPFFMALE------------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS------YRYSGAGV  383 (438)
T ss_pred             HHHHHHHHHHH------------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc------hhHHHHhH
Confidence            54443333210                  0012333444556667887777888899999999997      58888887


Q ss_pred             HH-HHHHHHHHHHHHhhhheeecc--chhhhhhHhHHHHHHHHHHHHH
Q 022608          181 YY-FVMGAAILVAVTVLVYIQDNI--GWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       181 ~~-~~~~ig~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      .+ .+..+|+.++|.+.+++.+..  +|...+.+.+++.+++.+..+.
T Consensus       384 ~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        384 GYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            44 445689999999999887643  3777776666666666555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.56  E-value=4.3e-13  Score=120.55  Aligned_cols=172  Identities=19%  Similarity=0.250  Sum_probs=147.4

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhH-HHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-TITIASIIYQI  101 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~l~~~~~~~~i  101 (294)
                      ..+.+....++..........+++.|+++.+|.+..+.+.......++..++.++.|+++||+ |||+ .+..+.++..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i  254 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL  254 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence            334444556666777777778888998887899999999999999999999999999999998 9999 99999888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +.+......                      +.+.+.+..++.|++.+...+....++.|..|++      +|++.++.+
T Consensus       255 ~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  306 (352)
T cd06174         255 GLLLLALAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPE------ARGTASGLF  306 (352)
T ss_pred             HHHHHHHhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH------HHHHHHHHH
Confidence            887776654                      4667778888999999999999999999999986      599999999


Q ss_pred             HHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHH
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      +...++|..+++.+.+.+.+..+|+..+.+.+++.+++.+..
T Consensus       307 ~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         307 NTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            999999999999999999988899999988888776665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.56  E-value=1.1e-13  Score=130.71  Aligned_cols=158  Identities=15%  Similarity=0.179  Sum_probs=138.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 022608           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (294)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (294)
                      +++++..+.+++.+.+..++.++++++|+++||+ |-|+++..+.++..+++++...+..                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999998 9999999999999999999988762                    


Q ss_pred             hhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec-cchhhhhh
Q 022608          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN-IGWGWGLG  210 (294)
Q Consensus       132 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~-~g~~~~f~  210 (294)
                      ...+.+++.|+++|++.|...+....+.+.+.|++|      |+++.+..+.+..+|.+++..++|++.+. .||+..|+
T Consensus       126 ~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY  199 (466)
T KOG2532|consen  126 IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFY  199 (466)
T ss_pred             hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHH
Confidence            234477899999999999999999999999999995      99999999999999999999999999888 99999999


Q ss_pred             HhHHHHHHHHHHHHHhccceeccCCC
Q 022608          211 IPTFAMFLSIIAFLIGYPLYRNLDPA  236 (294)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (294)
                      +.+++..+..++++......+.+++.
T Consensus       200 ~~g~~g~i~~~~w~~~~~d~P~~h~~  225 (466)
T KOG2532|consen  200 VFGIVGLIWFILWFLFYSDSPSKHPN  225 (466)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcccCCC
Confidence            99988777766665555444444444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.55  E-value=3.9e-13  Score=122.93  Aligned_cols=159  Identities=13%  Similarity=0.076  Sum_probs=124.4

Q ss_pred             HhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022608           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (294)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~  115 (294)
                      ........+++.|+++++|.+..+.+.+.....+...++.+++|+++||+ |||+++.++.++..+.........     
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-----  286 (375)
T TIGR00899       213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN-----  286 (375)
T ss_pred             HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH-----
Confidence            33344456788899888999999999888777777778889999999998 999998887765555444333333     


Q ss_pred             CCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 022608          116 RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~  195 (294)
                                       +.+.+.+..++.|++.+...+....+..|..|++       +++..+.++...++|..++|.+
T Consensus       287 -----------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~~~  342 (375)
T TIGR00899       287 -----------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWIIAGSV  342 (375)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHHH
Confidence                             4555666677778888877777788888988764       6788999999999999999999


Q ss_pred             hhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          196 LVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       196 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      .+.+.+..||+..|++.+++.+++.+...
T Consensus       343 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       343 GGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            99998888999999888877666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00896 CynX cyanate transporter

Probab=99.55  E-value=8.6e-14  Score=126.98  Aligned_cols=146  Identities=12%  Similarity=0.169  Sum_probs=119.6

Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 022608           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (294)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~  122 (294)
                      ..+.+.+++++|++..+.+++.+...++..++.++.|+++||+ |||+++.++.++..++.+.. ...            
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------------   85 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------------   85 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------------
Confidence            3344556779999999999999999999999999999999998 99999999988877776655 333            


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec
Q 022608          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN  202 (294)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~  202 (294)
                                +.+.+++.|++.|+|.+...+..+..+.|.+++       +|++..+.++...++|..+++.+.+.+.+.
T Consensus        86 ----------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        86 ----------GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             ----------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      567778899999999998888888888888864       489999999999999999999888877665


Q ss_pred             c--chhhhhhHhHHHHHHH
Q 022608          203 I--GWGWGLGIPTFAMFLS  219 (294)
Q Consensus       203 ~--g~~~~f~~~~~~~~~~  219 (294)
                      .  +|+..|.+.++..++.
T Consensus       149 ~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       149 SGGHWQQALAWWALPALLA  167 (355)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            4  3888877665544333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.54  E-value=3.8e-13  Score=125.74  Aligned_cols=181  Identities=7%  Similarity=-0.084  Sum_probs=118.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +..+.+....++..++++.+.++++.|+++++|++..+.+.+.++..+...+++++.|+++||+ |||++++++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4666677777788887778889999999999999999999999999999999999999999998 999999887665554


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +..........+..              .........++.++.+.+.....+....+. +..++       +++..++..
T Consensus        89 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~g~~~g~~  146 (420)
T PRK09528         89 LFGPFFIYVFAPLL--------------QYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVSR-------RSGFEYGRA  146 (420)
T ss_pred             HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHHHh-------hccccchhh
Confidence            43322211100000              000111112222333332222222222222 11111       366677777


Q ss_pred             HHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                      +...++|..++|.+++++.+ .+|+..|++.++..++.++..+..
T Consensus       147 ~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        147 RMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             HHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcc
Confidence            77889999999999888765 489988888776665555444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.53  E-value=7.6e-13  Score=127.11  Aligned_cols=135  Identities=17%  Similarity=0.260  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHH
Q 022608           59 KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILY  138 (294)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (294)
                      +.+++.+...++..++.++.|+++|++ |||++++++.+++.+|.++...+.                      +...+.
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~----------------------~~~~l~  146 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP----------------------SWYQLI  146 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh----------------------hHHHHH
Confidence            458999999999999999999999998 999999999999999999999987                      889999


Q ss_pred             HHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec-cchhhhhhHhHHHHH
Q 022608          139 VSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN-IGWGWGLGIPTFAMF  217 (294)
Q Consensus       139 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~  217 (294)
                      ++|++.|+|.|+.....+.+++|..|++      .||...+.+++...+|..++..+.....+. .+||..+.+..+..+
T Consensus       147 ~GR~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~  220 (513)
T KOG0254|consen  147 VGRILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAV  220 (513)
T ss_pred             HHHHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999998      599999999999999999996554444332 489977776665544


Q ss_pred             HHHHH
Q 022608          218 LSIIA  222 (294)
Q Consensus       218 ~~~~~  222 (294)
                      +..+.
T Consensus       221 ~~~~~  225 (513)
T KOG0254|consen  221 ILALG  225 (513)
T ss_pred             HHHHH
Confidence            44333

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.53  E-value=1.9e-12  Score=123.70  Aligned_cols=178  Identities=12%  Similarity=0.074  Sum_probs=137.4

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh----cchhHH-H
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFWT-I   92 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~-l   92 (294)
                      ...+|+.+.++.+.+......+.....++.+++ +.|.|..+.+....+...  .++.+++|+++||+    +|||+. +
T Consensus         8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~l   84 (491)
T PRK11010          8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWL   84 (491)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHH
Confidence            345667777888888888888877788888876 469999999886322222  36889999999995    288875 5


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhh
Q 022608           93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (294)
Q Consensus        93 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  172 (294)
                      +.+.++..++.+.+++..                   +..+.+.+.+.+++.+++.+...+...++..|++|++      
T Consensus        85 l~~~i~~~~~~~~~a~~~-------------------~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------  139 (491)
T PRK11010         85 LATQLLLLVAIAAMGFLE-------------------PGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------  139 (491)
T ss_pred             HHHHHHHHHHHHHHHHcC-------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------
Confidence            566666666666665543                   1225677888888899999999999999999999987      


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhheee-ccchhhhhhHhHHHHHHHHHHH
Q 022608          173 KTWKYFNWYYFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       173 ~rg~~~~~~~~~~~ig~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      +|++..++...+..+|..+++.+.+++.+ ..||+..|++.++..++..+..
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~  191 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIAT  191 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999998888887 5799999998877665554433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.53  E-value=5.5e-13  Score=121.27  Aligned_cols=169  Identities=12%  Similarity=0.064  Sum_probs=131.0

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      ..+.+....++..+.......+++.|. +++|.+..+.+.+.....++..++.++.|+++||+ |||+.+.++.++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  283 (377)
T TIGR00890       206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG  283 (377)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence            344444444455555555556666675 46889999999999999999999999999999998 9999999888887777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      .+.+....                    ......+....++.+++.+...+..+.++.|.+|++      +|++..++++
T Consensus       284 ~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~------~~~~~~g~~~  337 (377)
T TIGR00890       284 MAAMLFIP--------------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA------NSAANYGFLY  337 (377)
T ss_pred             HHHHHHcc--------------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh------hhhhHhHHHH
Confidence            76655433                    002233444556778888888888888999999988      5999999999


Q ss_pred             HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHH
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  219 (294)
                      ...++|+.++|.+.+.+.+..||+..|.+.+++.+++
T Consensus       338 ~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       338 TAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            9999999999999999999899999888877665554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.53  E-value=5.7e-13  Score=132.06  Aligned_cols=133  Identities=11%  Similarity=0.009  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHH
Q 022608           62 NTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL  141 (294)
Q Consensus        62 ~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (294)
                      ....+..++..++.+++|+++||+ |||++++++.++..++.+++.+..                      +...+++.+
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~----------------------s~~~ll~~~  655 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN----------------------SESAMIALL  655 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc----------------------cHHHHHHHH
Confidence            334556678889999999999998 999999999888888877766654                      344455666


Q ss_pred             HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          142 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       142 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      ++.+++.++..+...++++|++|++      .|++++++.+....+|++++|.+++++.+. +...+|++.+++.+++.+
T Consensus       656 ~l~g~~~~~~~~~~~a~~aEl~Pt~------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l  728 (742)
T TIGR01299       656 CLFGGLSIAAWNALDVLTVELYPSD------KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL  728 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            6777777778888899999999998      699999999999999999999998877653 345566666665555544


Q ss_pred             HHH
Q 022608          222 AFL  224 (294)
Q Consensus       222 ~~~  224 (294)
                      +.+
T Consensus       729 l~~  731 (742)
T TIGR01299       729 LAL  731 (742)
T ss_pred             HHH
Confidence            443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.52  E-value=8.2e-13  Score=137.86  Aligned_cols=156  Identities=12%  Similarity=0.057  Sum_probs=123.3

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCH--HHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPL--TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      .+.+..+++..++.++...+....+..++...++.+.  ...+++.+++.+...++++++|+++||+ |||++++++.++
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            3445555666666666655555556666666666654  4468888899999999999999999998 999999998877


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      .+++.++..+..                   ...+.+.+++.|++.|++.+...+...++++|++|++      +|++++
T Consensus        87 ~~~~~~~~~~~~-------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~  141 (1146)
T PRK08633         87 EVGLTLLIVLAY-------------------YLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRAN  141 (1146)
T ss_pred             HHHHHHHHHHHH-------------------HHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhh
Confidence            666655544432                   0115788899999999999999999999999999987      599999


Q ss_pred             HHHHHHHHHHHHHHHHhhhheeec
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQDN  202 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~~~  202 (294)
                      ++++.+.++|.++|+.+++++...
T Consensus       142 ~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        142 GLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999887664

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.52  E-value=2.5e-13  Score=124.26  Aligned_cols=166  Identities=14%  Similarity=0.034  Sum_probs=126.4

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      ..+.+....++....++....+++.|+++++|++..+.+.......+...++.+++|+++||+ |||+.+..+..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~  298 (394)
T TIGR00883       220 PFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALL  298 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            456666677777788888888999999888999999999999999999999999999999998 9999887655444433


Q ss_pred             H-HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH-
Q 022608          103 M-ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-  180 (294)
Q Consensus       103 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~-  180 (294)
                      . .......                   ...+.+.+....++.+++.+...+...+++.|.+|++      .|++..+. 
T Consensus       299 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~  353 (394)
T TIGR00883       299 AVPLLMALL-------------------DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTE------VRYTGASLA  353 (394)
T ss_pred             HHHHHHHHh-------------------cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcc------ceeeEeeeh
Confidence            2 2221111                   0113455556667778888888889999999999987      48888886 


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTF  214 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~  214 (294)
                      ++....+|+.++|.+.+++.+..| |+..++..++
T Consensus       354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHH
Confidence            455667888899999999988887 7765555444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.52  E-value=1.9e-12  Score=120.11  Aligned_cols=176  Identities=11%  Similarity=0.002  Sum_probs=132.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +..+.+.+..++....+++...++|.|+++ +|++..+++...+.+.++..++.++.|+++||+ |||+.+..+..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            345555556666777888888999999976 799999999999999999999999999999998 999999888777766


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +...+....   .                  +...+.  .++.|++.+...+.......+.+++++     .+++.++..
T Consensus       283 ~~~~~~~~~---~------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~  334 (393)
T PRK09705        283 GFCGFIWLP---L------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFM  334 (393)
T ss_pred             HHHHHHHcc---c------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHH
Confidence            665443222   0                  111121  234577777777777767777776432     589999999


Q ss_pred             HHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHHHhc
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      +...++++.++|.+.+++.+..| |...|.+.+++.++.++......
T Consensus       335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK09705        335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA  381 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999998876 66777776666655554444433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.51  E-value=1.3e-12  Score=119.24  Aligned_cols=153  Identities=13%  Similarity=0.124  Sum_probs=113.9

Q ss_pred             HHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh----cchhHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022608           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFWTI-TIASIIYQIGMICLTISAILPQLRPPP  119 (294)
Q Consensus        45 l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~~l-~~~~~~~~i~~i~~~~~~~~~~~~~~~  119 (294)
                      ..+.+.+++|+|.++.++.... .+...+ .+++|+++||+    +||||.+ +.+.++..+.+..+.+..         
T Consensus        10 ~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---------   78 (356)
T TIGR00901        10 TLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---------   78 (356)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---------
Confidence            3344445789999999998655 333343 89999999996    4898875 555555555555554432         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                                +..+.+.+....++.+++.+...+...+++.|++|++      +|+.+.++...+.++|..+++.+++.+
T Consensus        79 ----------~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901        79 ----------PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             ----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1124555666666777888888889999999999887      599999999999999999999999888


Q ss_pred             eeccc--------hhhhhhHhHHHHHHHHHHHH
Q 022608          200 QDNIG--------WGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       200 ~~~~g--------~~~~f~~~~~~~~~~~~~~~  224 (294)
                      .+..|        |+..|++.++..++..+..+
T Consensus       143 ~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       143 ASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             hhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            87777        99999888876665544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.51  E-value=1.4e-12  Score=124.30  Aligned_cols=149  Identities=19%  Similarity=0.177  Sum_probs=113.5

Q ss_pred             hhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022608           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (294)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~  119 (294)
                      ....++|.|+++++|++..+++.+.+...++..++.+++|+++||+ |||+++..+.++..++.+......         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            3457789999889999999999999999999999999999999998 999998887766555544333221         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                                 ....+.+.+..++.+....+..+..+.++.|.+|++      +|++.+++++...++|+.++|.+.+++
T Consensus       363 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g~l  425 (496)
T PRK03893        363 -----------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGALI  425 (496)
T ss_pred             -----------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHHHH
Confidence                       113333333333333333334567778889999987      599999999999999999999999999


Q ss_pred             eeccchhhhhhHhHHH
Q 022608          200 QDNIGWGWGLGIPTFA  215 (294)
Q Consensus       200 ~~~~g~~~~f~~~~~~  215 (294)
                      .+.+||+..+...+..
T Consensus       426 ~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        426 AQRLDLGTALASLSFS  441 (496)
T ss_pred             hccCChHHHHHHHHHH
Confidence            9999988777554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.50  E-value=1.8e-12  Score=118.15  Aligned_cols=179  Identities=13%  Similarity=0.035  Sum_probs=127.0

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHH-HHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT-ITIASIIYQ  100 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-l~~~~~~~~  100 (294)
                      +..+......++.....+....+++.|+++.+|.+..+.+.+.....++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4556666777777888888888999999999999999999999999999999999999999998 98861 111111111


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+..........               .............+.+++.+ ..+....+..|.+|++      .|++..++
T Consensus       294 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~g~~~~~  351 (399)
T TIGR00893       294 IAGLVLSLLMFATN---------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGN------IAGLTGGL  351 (399)
T ss_pred             HHHHHHHHHHHHhc---------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChh------HHHHHHHH
Confidence            22111111100000               00122233333333334444 6788899999999988      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~  223 (294)
                      ++...++|+.++|.+.+++.+..| |+..|.+.+++.+++.+..
T Consensus       352 ~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       352 INSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888 9988887777666655444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.50  E-value=3.2e-12  Score=118.21  Aligned_cols=174  Identities=10%  Similarity=0.011  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      ++......++.....+....++++|+++..|++..+++.+.....++..++.++.|+++||+ |||+.+ .+..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            33344445555555666667788898888899999999999999999999999999999998 887654 4444443433


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      ..+....                     .+.+.+.+..++.|++.+...+.....+.|..|+       .++++++.++.
T Consensus       285 ~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~  336 (390)
T PRK03545        285 LLLLPAA---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSG  336 (390)
T ss_pred             HHHHHHh---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHH
Confidence            3322211                     1455666677788888877777777778887664       38889999998


Q ss_pred             HHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 022608          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       184 ~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      ..++|..+||.+.|++.+.+|++..|+..+++.+++++......
T Consensus       337 ~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        337 IFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            89999999999999999999999999988887777766655443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.50  E-value=3.9e-12  Score=118.28  Aligned_cols=167  Identities=13%  Similarity=0.095  Sum_probs=127.4

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh----cchhH-HHHHHHHHHHHH
Q 022608           28 FSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY----AGRFW-TITIASIIYQIG  102 (294)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Grr~-~l~~~~~~~~i~  102 (294)
                      +...+.+...+.....-+|.|+++ .|+|..+.+++..+...  .+..+++|+++||+    +|||| .+.++.++..++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            445556666666667789999975 59999999998666654  68999999999997    26665 677777777766


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      ...+.+..                   +..+.+.+.+..++.++..+...+...+++.|++|++      +|+++.+...
T Consensus        82 ~~~l~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~  136 (402)
T PRK11902         82 IAAMAFCP-------------------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKV  136 (402)
T ss_pred             HHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHH
Confidence            66665542                   1124566666666677888888899999999999987      5999999999


Q ss_pred             HHHHHHHHHHHHhhhheeec-cchhhhhhHhHHHHHHHHHH
Q 022608          183 FVMGAAILVAVTVLVYIQDN-IGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~  222 (294)
                      .+.++|..+++.+.+++.+. .||+..|++.++..++..+.
T Consensus       137 ~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        137 LGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999888887775 59999999877766554443

>PTZ00207 hypothetical protein; Provisional

Probab=99.49  E-value=4.2e-12  Score=122.64  Aligned_cols=172  Identities=12%  Similarity=0.028  Sum_probs=124.6

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      .|..++..+.+..+... .|++. .....+++++|+|..+.+++.++.. ....+.++.|+++||+ |+|++++++.++.
T Consensus        26 Rw~~lva~~~~~~~~g~-~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~  101 (591)
T PTZ00207         26 RFALLVLGAFCSICTSF-MYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVF  101 (591)
T ss_pred             hHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            34333333333333333 33433 4556778899999999999887643 4456777899999998 9999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.++++++.. ..               ...+.+.+++.+++.|+|.+...+.....+.++||.       +||++.+
T Consensus       102 ~iG~ll~ala~~-~~---------------i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~G  158 (591)
T PTZ00207        102 CLGTLLFALTFQ-EV---------------IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVA  158 (591)
T ss_pred             HHHHHHHHHHhc-cc---------------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHH
Confidence            999998888630 00               012688899999999999998888888899999985       4899999


Q ss_pred             HHHHHHHHHHHH-HHHhhhheeeccchhhhhhHhHHHHHHHH
Q 022608          180 WYYFVMGAAILV-AVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (294)
Q Consensus       180 ~~~~~~~ig~~~-~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (294)
                      +......+|+++ +++..+++.  .+|+..|++.+++.++..
T Consensus       159 i~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~  198 (591)
T PTZ00207        159 IMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVG  198 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHH
Confidence            999999999975 555555544  356666666655544433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.49  E-value=3.2e-12  Score=118.55  Aligned_cols=165  Identities=10%  Similarity=-0.032  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~  106 (294)
                      +....++....++....++|.|+++ .|++..+.+.+.....++..++.++.|+++||+ |||+.+..+.+...++.+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  302 (406)
T PRK11551        225 LWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAAL  302 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence            3344444555666677788888864 799999999999999999999999999999998 99999887666555554444


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  186 (294)
                      ....                      +.+.+.+..++.|++.++..+...++..|.+|++      .|++..++++....
T Consensus       303 ~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~  354 (406)
T PRK11551        303 AAAP----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ------VRGTGVGAAVAVGR  354 (406)
T ss_pred             HhcC----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh------hhhhhhhHHHHhhh
Confidence            3322                      3444555566777777777888889999999988      59999999999999


Q ss_pred             HHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHH
Q 022608          187 AAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSII  221 (294)
Q Consensus       187 ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~  221 (294)
                      +|+.++|.+.+++.+..+ |...+++...+.+++.+
T Consensus       355 ~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK11551        355 LGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAAL  390 (406)
T ss_pred             HHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHH
Confidence            999999999999887654 44555555444444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.48  E-value=2.6e-12  Score=134.31  Aligned_cols=145  Identities=12%  Similarity=0.003  Sum_probs=109.5

Q ss_pred             hhhhcCCCH-HHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH--HHHHHHHHHHHhhcCCCCCCCCCCccc
Q 022608           49 LTTQLHMPL-TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII--YQIGMICLTISAILPQLRPPPCEGEQV  125 (294)
Q Consensus        49 l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~--~~i~~i~~~~~~~~~~~~~~~~~~~~~  125 (294)
                      +++..+.+. ...++..+++.+...++++++|+++||+ |||+++......  ............               
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~---------------  105 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL---------------  105 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence            333344433 4467777888899999999999999998 999976432221  211211222211               


Q ss_pred             cccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccch
Q 022608          126 CQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGW  205 (294)
Q Consensus       126 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~  205 (294)
                            .+++.++++|++.|++.+...+...+++.|+++++      ++++++++.+++.++|.++||.+++++....||
T Consensus       106 ------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~  173 (1140)
T PRK06814        106 ------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTFIAILLGTIIGGLATISGNF  173 (1140)
T ss_pred             ------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                  16788999999999999999999999999999998      599999999999999999999999999988899


Q ss_pred             hhhhhHhHHHHHHHHH
Q 022608          206 GWGLGIPTFAMFLSII  221 (294)
Q Consensus       206 ~~~f~~~~~~~~~~~~  221 (294)
                      ++.|+..+++.+++++
T Consensus       174 ~~~~~~~~~~~~~~~~  189 (1140)
T PRK06814        174 VILVALLMGIAVLGWL  189 (1140)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888444444443333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.48  E-value=1.1e-12  Score=124.11  Aligned_cols=173  Identities=10%  Similarity=0.029  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh-cchhHHHHHHHHHH--
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY-AGRFWTITIASIIY--   99 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Grr~~l~~~~~~~--   99 (294)
                      .++......++..+.++....+++.|+++ .|++..+++.+.+...++..++.+++|+++||. +++++..+++..+.  
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  320 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFN  320 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHH
Confidence            44555555666677777777889999864 799999999999999999999999999999973 24444444333222  


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.+++....                      +.+.+++.+++.|++.+...+...+++.|.+|++      .+++.++
T Consensus       321 ~l~~ll~~~~~----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~g  372 (455)
T TIGR00892       321 GLTHLLCALAG----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAVG  372 (455)
T ss_pred             HHHHHHHHHhc----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHHh
Confidence            23333332222                      5566777888899999999999999999999887      5999999


Q ss_pred             HHHHHHHHHHHHHHHhhhheeecc-chhhhhhHhHHHHHHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNI-GWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +++...++|+.++|.+.+++.+.. +|+..|++.+++.+++.+...
T Consensus       373 ~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~  418 (455)
T TIGR00892       373 LVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLA  418 (455)
T ss_pred             HHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHH
Confidence            999999999999999999998877 498888888876665554433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.48  E-value=2.7e-12  Score=118.57  Aligned_cols=157  Identities=11%  Similarity=-0.110  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH-HHHHH-
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY-QIGMI-  104 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~-~i~~i-  104 (294)
                      +....++...++-...+++|.|++ ++|+|..+.+++.+...+...+++++.|+++||+ ||+........+. .+..+ 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~~~   86 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFAAA   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH
Confidence            444455555555556677888885 6899999999999999999999999999999998 9854332211111 11111 


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  184 (294)
                      ....+.                      +.+.+++.+++.+.+.+...+...++..|. . +      +|++.++.....
T Consensus        87 ~~~~~~----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~-~------~~~~~~g~~~~~  136 (382)
T TIGR00902        87 FSAGAH----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW-Q-K------QFGLDYGKVRLI  136 (382)
T ss_pred             HHHhhh----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH-H-H------HcCCCccHHHHH
Confidence            111222                      678888889888888888788777776543 2 2      478889999999


Q ss_pred             HHHHHHHHHHhhhheeeccchhhhhhHhHHH
Q 022608          185 MGAAILVAVTVLVYIQDNIGWGWGLGIPTFA  215 (294)
Q Consensus       185 ~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~  215 (294)
                      .++|..++|.+++++.+.+||+..|++..+.
T Consensus       137 ~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       137 GSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            9999999999999999999999988776554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.48  E-value=1.6e-12  Score=122.90  Aligned_cols=177  Identities=15%  Similarity=0.111  Sum_probs=121.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcch--hHHH-HHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR--FWTI-TIASII   98 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--r~~l-~~~~~~   98 (294)
                      +.++...+..++.....++...++|.|+++..|++..+++.+...+.++..++.+++|+++||+ ++  |+.. .....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            3455566666777777788889999999988999999999888888888889999999999997 43  3322 222223


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      ..++.+.+....                    ..+.....++.++.|.+..........+..|.+|++      .||+.+
T Consensus       332 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~  385 (452)
T PRK11273        332 VTIATIVYWLNP--------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAA  385 (452)
T ss_pred             HHHHHHHHHHhc--------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh------hhhhHH
Confidence            333333222211                    012333334444444443332333345677999987      599999


Q ss_pred             HHHHHHHHHHHHH-HHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          179 NWYYFVMGAAILV-AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       179 ~~~~~~~~ig~~~-~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ++.+...++|+.+ +|.+.+++.+..||+..|++.++..+++++....
T Consensus       386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            9999888888765 7999999999999999998887766666544443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.48  E-value=2.6e-12  Score=119.05  Aligned_cols=166  Identities=11%  Similarity=0.019  Sum_probs=125.1

Q ss_pred             HHHHHHhHHhhHHHHHHHhhhhcCCCHH---HHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 022608           31 EVCEKLAVVGFNTNMISYLTTQLHMPLT---KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLT  107 (294)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~  107 (294)
                      .++.......+..+++.|+.+..+....   ..+.+..+..++..++.++.|+++||+ |||+.+..+.++..++.+.+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence            3334444444556677787764433222   234455556677778888999999998 999999988877766665554


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHH
Q 022608          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA  187 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~i  187 (294)
                      ...                      +.+.+.+.+++.|++.+...+....++.+..|++      ++|+.++.++...++
T Consensus       307 ~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~  358 (408)
T PRK09874        307 FVQ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDI  358 (408)
T ss_pred             Hhc----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHH
Confidence            433                      4566777788889999988888888888888876      589999999999999


Q ss_pred             HHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          188 AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       188 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      |..+||.+++.+.+..||+..|++.+++.+++.+....
T Consensus       359 g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        359 GNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888877766655444

>PRK12382 putative transporter; Provisional

Probab=99.48  E-value=1.8e-12  Score=119.82  Aligned_cols=162  Identities=15%  Similarity=0.177  Sum_probs=126.1

Q ss_pred             HHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 022608           32 VCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAI  111 (294)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~  111 (294)
                      ++....+..+..+++.|+++ .+++.  .+.......++..++.++.|++.||+ |+|+.+..+..+..++.++..... 
T Consensus       226 ~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-  300 (392)
T PRK12382        226 ALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP-  300 (392)
T ss_pred             HHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc-
Confidence            33445555666777888764 46653  44555666677788899999999998 999999988887777776655433 


Q ss_pred             cCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 022608          112 LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV  191 (294)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~  191 (294)
                                           +.+.+.++.++.|++.+...+.......|.+|++      +||+..++++...++|..+
T Consensus       301 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~i  353 (392)
T PRK12382        301 ---------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGV  353 (392)
T ss_pred             ---------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHH
Confidence                                 4455666778888888888888888888988877      5999999999999999999


Q ss_pred             HHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          192 AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       192 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      +|.+.+++.+..||+..|.+.+++.+++.+..+.
T Consensus       354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999888777666655443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.47  E-value=2.3e-12  Score=120.73  Aligned_cols=177  Identities=9%  Similarity=0.017  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCC--------HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHH
Q 022608           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP--------LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (294)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~   96 (294)
                      +.+++..++..........+++.|+++ .|.+        ....+.+.++..+...++.++.|+++||+ |||+++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~  288 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL  288 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence            334444555444444455667788754 4543        36668888888888899999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus        97 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      ++..++..++.....                  +....+.+++..++.|++.+...+....+++|.+|++      .|++
T Consensus       289 ~~~~v~~~l~~~~~~------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~  344 (418)
T TIGR00889       289 VAWALRFGFFAYGDP------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRAS  344 (418)
T ss_pred             HHHHHHHHHHHHcCc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHH
Confidence            888777655554220                  0113455667788889998888888899999999988      5999


Q ss_pred             HHHHHH-HHHHHHHHHHHHhhhheeec------cchhhhhhHhHHHHHHHHHHHHHhc
Q 022608          177 YFNWYY-FVMGAAILVAVTVLVYIQDN------IGWGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       177 ~~~~~~-~~~~ig~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      ..++++ ....+|..+||.+.|++.+.      +||+..|.+.+++.+++.+++++..
T Consensus       345 ~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~  402 (418)
T TIGR00889       345 AQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF  402 (418)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999997 56789999999999998876      4689888887776666555544443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.47  E-value=1.6e-13  Score=126.49  Aligned_cols=152  Identities=44%  Similarity=0.832  Sum_probs=113.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh
Q 022608           89 FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP  168 (294)
Q Consensus        89 r~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~  168 (294)
                      .|+++++.+++++|.+++.++. .|...            +...+.+.+++++.++++|.|+..+++.++++||+++++ 
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~-~~~~~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~-   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSA-IPPSL------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD-   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHH-TSSSC------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT-
T ss_pred             CHhhhHHHHHHHHHHHHhHHHH-hcchh------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc-
Confidence            4789999999999999988887 33321            123356788999999999999999999999999999874 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhccceecc-CCCCChhHH-HHHH
Q 022608          169 KQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNL-DPAGSPFTR-LLQV  246 (294)
Q Consensus       169 ~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  246 (294)
                        +++|.++++++|++.|+|+.+++.+.+++.+++||.+.|.++.+.++++++.++.++++++.. ++.+++..+ ...+
T Consensus        67 --~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~  144 (372)
T PF00854_consen   67 --DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLV  144 (372)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHH
T ss_pred             --hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHH
Confidence              237999999999999999999999999999999999999999999999999999999888877 566666555 3334


Q ss_pred             HHHHHHhCcc
Q 022608          247 CVAAFRKRKL  256 (294)
Q Consensus       247 ~~~~~~~~~~  256 (294)
                      .....+++..
T Consensus       145 ~~~~~~~~~~  154 (372)
T PF00854_consen  145 LVAAFKKRKL  154 (372)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhhc
Confidence            4444444433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.46  E-value=2e-12  Score=119.14  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~  106 (294)
                      +.....+.+...+....+++.|+++++|++..+.+++.....++..++.++.|+++||+ |||+.+.++.++..+..+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  321 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV  321 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence            33444444555556677889999989999999999999999999999999999999998 99999888776543322222


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  186 (294)
                      ....                     .+.+.+.+..++.++..+...+..+.++.|.+|++      .|++.++..+...+
T Consensus       322 ~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~  374 (405)
T TIGR00891       322 FAIG---------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLGN  374 (405)
T ss_pred             HHhC---------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHHH
Confidence            1111                     13445555556666666677778889999999987      59999999999999


Q ss_pred             HHHHHHHHhhhheeeccc-hhhhhhH
Q 022608          187 AAILVAVTVLVYIQDNIG-WGWGLGI  211 (294)
Q Consensus       187 ig~~~~~~~~~~l~~~~g-~~~~f~~  211 (294)
                      +|+.++|.+.+++.+..| |+..+..
T Consensus       375 ~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       375 LGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHh
Confidence            999999999999999888 7655443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.46  E-value=1.4e-12  Score=125.44  Aligned_cols=140  Identities=14%  Similarity=0.066  Sum_probs=124.2

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 022608           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (294)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (294)
                      +..+.+.....+..+++.++..+|++++|+++||+ |||++++.+.++.+++.++.+++.                    
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~--------------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP--------------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence            45677888999999999999999999999999996 999999999999999998888877                    


Q ss_pred             chhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhh
Q 022608          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLG  210 (294)
Q Consensus       131 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~  210 (294)
                        +++.+++.|++.|++.++...+...+++|+++++      .|+....+ ......++.+++..++++..  +||+.++
T Consensus       170 --~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~  238 (521)
T KOG0255|consen  170 --NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW  238 (521)
T ss_pred             --cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence              8999999999999999999999999999999999      59988888 77777788888888888777  7999998


Q ss_pred             HhHHHHHHHHHH
Q 022608          211 IPTFAMFLSIIA  222 (294)
Q Consensus       211 ~~~~~~~~~~~~  222 (294)
                      +..+..++.++.
T Consensus       239 ~~~~~~~~~~~~  250 (521)
T KOG0255|consen  239 IISIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHHHH
Confidence            877766655444

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.45  E-value=5.4e-12  Score=118.63  Aligned_cols=179  Identities=11%  Similarity=-0.026  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcch--hHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR--FWTITIASIIYQ  100 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--r~~l~~~~~~~~  100 (294)
                      .++.+....++....++++.+++|.|+++++|++..+++...+.+.++..++.+++|+++||+.++  ++......+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            345455555566666677788999999888999999999999999999999999999999997222  232222211111


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +....+....   .                . +.....+..++.|++............+|.+|++      .|++..++
T Consensus       324 ~~~~~~~~~~---~----------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~  377 (434)
T PRK11663        324 LSVGSLWLMP---F----------------A-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKE------AAGAATGF  377 (434)
T ss_pred             HHHHHHHHcc---c----------------c-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHh------hHHhHHHH
Confidence            1211111111   0                0 2222223333344433322333445668888876      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      .+...++|+.++|.+.+++.+.+||+..|.+.+++.+++.+..+.+.
T Consensus       378 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        378 VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999989999998888777666555444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.45  E-value=3.8e-12  Score=118.76  Aligned_cols=157  Identities=6%  Similarity=-0.069  Sum_probs=126.3

Q ss_pred             HHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022608           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (294)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~  117 (294)
                      .+++..++|.|+++.+|.+....+++.+...++..++.++.+++.||. ++++.+..+.++..++.+++....       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence            345667889999888999999999999999999999999999999996 888888888777766666554433       


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 022608          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (294)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~  197 (294)
                                     +.+...++.++.|++.+...+...+++.|.+|++      .||+.+++++...++|..+|+.+.|
T Consensus       311 ---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~l~G  369 (417)
T PRK10489        311 ---------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE------MLGRINGLWTAQNVTGDAIGAALLG  369 (417)
T ss_pred             ---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHhhhHhHHHHHHH
Confidence                           4555666777788888777777788899999987      5999999999999999999999999


Q ss_pred             heeeccchhhhhhHhHHHHHHHHHHH
Q 022608          198 YIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       198 ~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      ++.+.+|++..+...+++.++..++.
T Consensus       370 ~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        370 GLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            99998888877776665544443333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.45  E-value=2.1e-12  Score=120.90  Aligned_cols=173  Identities=13%  Similarity=0.137  Sum_probs=125.3

Q ss_pred             HHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh---cchhH-HHHHHHHHHHHHHHHH
Q 022608           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFW-TITIASIIYQIGMICL  106 (294)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~l~~~~~~~~i~~i~~  106 (294)
                      .+..++.+..+..+++.|+++++|+++.+++.+.++..+...+..|+.|+++||.   +|||| .++.+..+..++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            3455666666778899999999999999999999999999999999999999983   38754 5667777777776666


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  186 (294)
                      ....   +..             .....+.+.+.+++.+++.+....+..++..|..++.+     +|++..++.+...+
T Consensus        88 ~~~~---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~  146 (437)
T TIGR00792        88 FTTP---DFS-------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGAT  146 (437)
T ss_pred             HhCC---CCC-------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHH
Confidence            5432   110             11234555666777788888888888888899875433     58888888888888


Q ss_pred             HHHHHHHHhhhhee-------eccchhhhhhHhHHHHHHHHHHHH
Q 022608          187 AAILVAVTVLVYIQ-------DNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       187 ig~~~~~~~~~~l~-------~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +|+.++..+.+.+.       +..||+..+.+.+++.++..++..
T Consensus       147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~  191 (437)
T TIGR00792       147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICF  191 (437)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence            88777665544332       245798888777766555544433

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.45  E-value=1.4e-12  Score=121.94  Aligned_cols=160  Identities=13%  Similarity=0.052  Sum_probs=123.7

Q ss_pred             HhHHhhHHHHHHHhhhhc---CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 022608           36 LAVVGFNTNMISYLTTQL---HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL  112 (294)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~  112 (294)
                      ..+......++.|+.+.+   +.+..+.+.+.++..+...++.+++|+++||+ |||+.+..+.++..++..+..+..  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~--  313 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT--  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc--
Confidence            333334445677766543   56767888888888888889999999999998 999999988888888777666544  


Q ss_pred             CCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH-HHHHHHHHHHH
Q 022608          113 PQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW-YYFVMGAAILV  191 (294)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~-~~~~~~ig~~~  191 (294)
                                          +.+.+.+.+++.+++.+...+....++.|.+|++      .+++..+. ++...++|..+
T Consensus       314 --------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~lg~~i  367 (420)
T PRK09528        314 --------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQFAKQLGAVF  367 (420)
T ss_pred             --------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHHHHHHHHHHH
Confidence                                5566677788888888777777788889999887      47766654 67778899999


Q ss_pred             HHHhhhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          192 AVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       192 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      ++.+.|++.+..||+..|.+.+++.++..++.+
T Consensus       368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999887776655544333

>TIGR00897 2A0118 polyol permease family

Probab=99.45  E-value=1.1e-11  Score=115.39  Aligned_cols=176  Identities=13%  Similarity=0.040  Sum_probs=127.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHH-HHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-IASIIYQ  100 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-~~~~~~~  100 (294)
                      +.++......++....+++...++|.|++ ++|++..+.+.+.....++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            34555566677777888888899998885 5899999999998999999999999999999998 9888764 3333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+.+......                 ...+.+.+.+..++.|++.+...+ ......|..|+       +|++.+++
T Consensus       300 ~~~~~l~~~~~~-----------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-------~~g~~~g~  354 (402)
T TIGR00897       300 IFTLALYYIPQH-----------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLAPK-------HKGAAMSV  354 (402)
T ss_pred             HHHHHHHHHHHc-----------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcc-------hhHHHHHH
Confidence            332332221100                 011345555666777877776544 34566676554       49999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      ++...++|+.++|.+.+.+.+..||...+++.+++.+++.+...
T Consensus       355 ~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~  398 (402)
T TIGR00897       355 LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTA  398 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999989999888888877666554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.45  E-value=5.9e-13  Score=103.76  Aligned_cols=131  Identities=11%  Similarity=0.178  Sum_probs=109.5

Q ss_pred             HHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHH
Q 022608           66 NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAA  145 (294)
Q Consensus        66 ~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  145 (294)
                      ...++..++.++.|+++||+ |||+.+..+..+..++.+......                      +.+.+.+.+++.|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g   62 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS----------------------NITVLIIARFLQG   62 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHH
Confidence            44566778899999999998 999999999888888777666544                      5677778889999


Q ss_pred             HhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          146 LGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       146 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ++.+...+....++.|.+|++      +|++..+..+....+|..+++.+.+.+.+..+|++.+++..+...+..+....
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        63 FGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            999988899999999999988      59999999999999999999999999888889998888877666555544443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.43  E-value=1.2e-11  Score=117.36  Aligned_cols=186  Identities=15%  Similarity=0.121  Sum_probs=149.3

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchh--HHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF--WTITIASI   97 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~l~~~~~   97 (294)
                      +.|.+...++..++.+-+...+......|.++++|++..+...+..+.++...++++++|++.||+ |.|  ++++++.+
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            345666666777778888888888999999999999999999999999999999999999999998 988  88888877


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      +..+..+...+.. .+...             ...+.+.+++.-++.|+..|..++..-++.+|+.|+.      +.+.+
T Consensus       358 ~~~~i~~~g~~G~-~~~~~-------------g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~ef  417 (477)
T PF11700_consen  358 LWIIIPLYGLFGF-WPSFF-------------GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEF  417 (477)
T ss_pred             HHHHHHHHHHHHh-hhccc-------------CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHH
Confidence            6643333322210 11100             0125677888788899999999999999999999998      68999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHHHh
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                      +++|.+.....+.+||++.+.+.+.+| .|+.+....++.+++++++...
T Consensus       418 Fgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  418 FGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999988877 7788887777777777666544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1.6e-11  Score=111.28  Aligned_cols=152  Identities=13%  Similarity=0.077  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .++.+....+...+.. ..+..+.+.+++.++++..+++++...+..++.++++..|++.+|+ |+|+.++.|+.++++|
T Consensus        14 ~~v~~t~lFfl~G~~~-~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg   91 (422)
T COG0738          14 AFVLLTSLFFLWGFIT-CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHHh-hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence            3344444445555543 3567788999999999999999999999999999999999999998 9999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      ..+.+-++                   ....+..+.++.++.+.|.+..++..+++++.+.+++.      ...-++..+
T Consensus        92 ~~lF~pAa-------------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q  146 (422)
T COG0738          92 AALFWPAA-------------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQ  146 (422)
T ss_pred             HHHHhhhh-------------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHH
Confidence            98887554                   22367888899999999999999999999999999863      444567777


Q ss_pred             HHHHHHHHHHHHhhhheee
Q 022608          183 FVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~  201 (294)
                      ....+|+.++|++++++..
T Consensus       147 ~fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         147 AFNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             HhhhhHHHHHHHHHHHHHH
Confidence            7888999999999887654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.42  E-value=1.8e-11  Score=113.02  Aligned_cols=169  Identities=8%  Similarity=-0.042  Sum_probs=139.3

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      |.++......++.....+...++.+.|+++ .|.+..+.+.+.+...+...++.++.+++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            455666666677777777788899999965 899999999999988888888999999999998 999999999999988


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      ..+......                      +.+.+++..++.|+..+...+....++.+. |++      .+++..+.+
T Consensus       283 ~~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~------~~~~~q~~~  333 (382)
T TIGR00902       283 RWAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS------EIAKLQALY  333 (382)
T ss_pred             HHHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh------hHHHHHHHH
Confidence            887776655                      677888889999999999999999999987 766      478888887


Q ss_pred             H-HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHH
Q 022608          182 Y-FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       182 ~-~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      + ....+|..+++.++|++.+.+|+ ..|++.+++.++++++
T Consensus       334 ~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       334 NALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            6 46789999999999999998886 5566666655555433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=7.7e-13  Score=119.25  Aligned_cols=148  Identities=14%  Similarity=0.070  Sum_probs=134.4

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccc
Q 022608           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANK  131 (294)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (294)
                      ..+-...+.|++....-+...+.+++.|.+.||+ |+|-.+++|+.++...++++++..                     
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------  157 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------  157 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence            3456678899999999999999999999999998 999999999999999999999987                     


Q ss_pred             hhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhH
Q 022608          132 GQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGI  211 (294)
Q Consensus       132 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~  211 (294)
                       ++++++++|.++|+|.+...+...++++|.||++.     +|++++|.......+|-.+||.++|.+-+..|.+..|.+
T Consensus       158 -sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlV  231 (464)
T KOG3764|consen  158 -SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLV  231 (464)
T ss_pred             -hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHH
Confidence             78899999999999999999999999999999987     799999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhc
Q 022608          212 PTFAMFLSIIAFLIGY  227 (294)
Q Consensus       212 ~~~~~~~~~~~~~~~~  227 (294)
                      .++++++...+-++..
T Consensus       232 L~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  232 LAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHHHHHHHHHhee
Confidence            9888777655544433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.42  E-value=9.4e-12  Score=114.92  Aligned_cols=156  Identities=12%  Similarity=-0.030  Sum_probs=114.6

Q ss_pred             HHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchh----HHHHHHHHHHHHHHHHH
Q 022608           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF----WTITIASIIYQIGMICL  106 (294)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr----~~l~~~~~~~~i~~i~~  106 (294)
                      .++..+++..+.+++|.|++ ++|.|..+.+++.++..+...++++++|+++||+ ||+    +.+.++..+.   .+..
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~---~~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF---AVAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH---HHHH
Confidence            33344445556677888885 5899999999999999999999999999999998 984    2222222111   1111


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  186 (294)
                      ...                     ..+.+.+++.+++.|++.+...+...++..+. .+       +|++.++......+
T Consensus        88 ~~~---------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~  138 (382)
T PRK11128         88 WFG---------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGS  138 (382)
T ss_pred             HHh---------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHH
Confidence            111                     11678888889999999888888877777765 22       36666777777788


Q ss_pred             HHHHHHHHhhhheeeccchhhhhhHhHHHHHHHH
Q 022608          187 AAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (294)
Q Consensus       187 ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (294)
                      +|..+||.+++++.+++||+..|++.++..++..
T Consensus       139 lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        139 IAFVIGSALTGKLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            9999999999999999999998887766544443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.42  E-value=9.9e-12  Score=116.79  Aligned_cols=152  Identities=11%  Similarity=0.019  Sum_probs=107.4

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH-HH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC-LT  107 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~-~~  107 (294)
                      ...++....++.+..++|.|+++.+|++..++++......++..++.+++|+++||+ |||+++..+.++..+..+. ..
T Consensus       245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence            344456667778888999999988999999998888888888899999999999998 9999888765443322211 11


Q ss_pred             HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH-HHH
Q 022608          108 ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF-VMG  186 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~-~~~  186 (294)
                      ...  +                 ........+..++.+++.+...+....++.|.+|++      .|++..++.+. +..
T Consensus       324 ~~~--~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~------~rg~~~g~~~~~~~~  378 (434)
T PRK15075        324 WLV--A-----------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE------VRTAGFSLAYSLATA  378 (434)
T ss_pred             HHH--c-----------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC------ccchheeHHHHHHHH
Confidence            111  0                 012222333344445666666666678899999998      58988888544 344


Q ss_pred             HHHHHHHHhhhheeeccchh
Q 022608          187 AAILVAVTVLVYIQDNIGWG  206 (294)
Q Consensus       187 ig~~~~~~~~~~l~~~~g~~  206 (294)
                      +++.++|.+.+++.+..|++
T Consensus       379 ~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        379 IFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHhhhHHHHHHHHHHhcCCc
Confidence            46778999999998887753

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.42  E-value=1.8e-11  Score=113.00  Aligned_cols=154  Identities=12%  Similarity=0.153  Sum_probs=117.0

Q ss_pred             HhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 022608           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQL  115 (294)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~  115 (294)
                      ..+....+++|.|+++ .|.+..+++...+...++..++.++.|+++||+ |+|+++..+..+..++.+...  .     
T Consensus       214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~-----  284 (381)
T PRK03633        214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S-----  284 (381)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h-----
Confidence            3344445678888865 699999999999999999999999999999998 999999888777766654332  1     


Q ss_pred             CCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 022608          116 RPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~  195 (294)
                                       .. .......+.|++.+...+.....+.|..|++      +++...+.++...++|+.++|.+
T Consensus       285 -----------------~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~igp~~  340 (381)
T PRK03633        285 -----------------QA-AMAPALFILGAAGFTLYPVAMAWACEKVEHH------ELVAMNQALLLSYTVGSLLGPSF  340 (381)
T ss_pred             -----------------hH-HHHHHHHHHHHHHHhHHHHHHHHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                             11 1223445566666667788888888888776      46777777788889999999999


Q ss_pred             hhheeeccchhhhhhHhHHHHHHHHHH
Q 022608          196 LVYIQDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       196 ~~~l~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      .|++.+.+||++.|.+.+.+.++..+.
T Consensus       341 ~G~l~~~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        341 TAMLMQNYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            999999999998888776666544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.41  E-value=1e-11  Score=118.24  Aligned_cols=173  Identities=8%  Similarity=0.006  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhH-----HHH--HHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-----TIT--IAS   96 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-----~l~--~~~   96 (294)
                      .+.+.+..++.....+.+..++|.|+.+++|++..+++.+.....++..++.+++|+++||+ |||+     ...  +..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            34444444444444556667889999888999999999999999999999999999999998 8762     222  222


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus        97 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      ++..++.+++....                      +.+...+..++.+++.+...+...++..+..|.       .+|.
T Consensus       333 ~l~~i~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~g~  383 (476)
T PLN00028        333 TLGGVFCIWLGRAN----------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSRR-------SLGV  383 (476)
T ss_pred             HHHHHHHHHhcccc----------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccChh-------hchh
Confidence            21111112111111                      233333444455555555555555556665543       4899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 022608          177 YFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       177 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      ..++.+...++|+.+++.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus       384 ~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        384 ISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            999988888888888877654 22344688889888877777766555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.41  E-value=8.7e-12  Score=114.03  Aligned_cols=156  Identities=13%  Similarity=0.111  Sum_probs=111.4

Q ss_pred             HHHHHhhhhcC--CCHHHHHHHHHH-----HHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 022608           44 NMISYLTTQLH--MPLTKAANTLTN-----FGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLR  116 (294)
Q Consensus        44 ~l~~yl~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~  116 (294)
                      +...++.++..  .++++.+.+.+.     ..+...+++++.|+++||+ |||++++.+.++..++.+++.+..+.+.. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI-   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence            34445554443  444555444433     2223346789999999998 99999999999998888877765411100 


Q ss_pred             CCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 022608          117 PPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (294)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~  196 (294)
                                   .......++++|++.|++.+...+....++.|.++++      +|++..+..+.+..+|..+++.+.
T Consensus        92 -------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G~~i~~~~~  152 (394)
T TIGR00883        92 -------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVGLLLAALTV  152 (394)
T ss_pred             -------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHHHHHHHHHH
Confidence                         0011245788999999999999999999999999988      599999999999999999988776


Q ss_pred             hhee--------eccchhhhhhHhHHHHHHHH
Q 022608          197 VYIQ--------DNIGWGWGLGIPTFAMFLSI  220 (294)
Q Consensus       197 ~~l~--------~~~g~~~~f~~~~~~~~~~~  220 (294)
                      ..+.        +..+|++.|.+.++..++..
T Consensus       153 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       153 LLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            5442        35689998887666554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.40  E-value=9.8e-12  Score=119.70  Aligned_cols=151  Identities=11%  Similarity=0.148  Sum_probs=116.0

Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 022608           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (294)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  123 (294)
                      ....+..+++|-+ ....|+.....+...++.++.|.++|.+ |||+.++.+.++.++|.++.+.+.             
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~-------------  129 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ-------------  129 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC-------------
Confidence            3345666777765 6667888889999999999999999998 999999999999999999998776             


Q ss_pred             cccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeecc
Q 022608          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~  203 (294)
                               +...++++..+.|+|.|... .....++|..|.+      .|.....+.....-+....++.++..+..+.
T Consensus       130 ---------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~  193 (599)
T PF06609_consen  130 ---------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHS  193 (599)
T ss_pred             ---------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCC
Confidence                     78889999999999977665 4566689999987      4666555544443344445666665555566


Q ss_pred             chhhhhhHhHHHHHHHHHHHHH
Q 022608          204 GWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       204 g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      +|||.|++.++...++++...+
T Consensus       194 ~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  194 GWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             CcchHHHHHHHHHHHHHHHHHH
Confidence            8999999988876666544433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.39  E-value=2.4e-11  Score=114.99  Aligned_cols=196  Identities=13%  Similarity=0.095  Sum_probs=133.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHh----hcchhHHHHHH-HH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADA----YAGRFWTITIA-SI   97 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Grr~~l~~~-~~   97 (294)
                      +++.+..+.+...+++-...+++++|+ +.+|.+....+.+..+..+...+.+|+.|+++||    + ||||.++.+ .+
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence            455666677777777777778888887 5799999999999999999999999999999995    6 999988875 55


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      ...++.+++..+..+..+...     ..-........+...++..+..++....+++..++++|.+|++++    +++.+
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~-----~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a  153 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGD-----NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIA  153 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccc-----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHH
Confidence            555555555543311110000     000000000113344455556677888888889999999998751    24678


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhe--eec-------------cchhhhhhHhHHHHHHHHHHHHHhccc
Q 022608          178 FNWYYFVMGAAILVAVTVLVYI--QDN-------------IGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l--~~~-------------~g~~~~f~~~~~~~~~~~~~~~~~~~~  229 (294)
                      .++.+...++|+.+|+.++++.  .+.             .+.+..|++.+++.++..++..+..++
T Consensus       154 ~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E  220 (477)
T TIGR01301       154 NAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKE  220 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeec
Confidence            9999999999999999887754  111             145678888777766665554443333

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=3.5e-11  Score=110.23  Aligned_cols=178  Identities=13%  Similarity=0.107  Sum_probs=141.7

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .+..+..+.+.++...+.|...+++-+|+++..|++....+++..++.++..++.+++|+++||  +.|+++....++..
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a  287 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA  287 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence            3456777788888888889999999999999999999999999999999999999999999999  68888888877777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +..+.+.+..                     .+.+...+..++.|++..........-.++..|++       +....++
T Consensus       288 ~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~-------~~~a~sl  339 (394)
T COG2814         288 LALLALTFTG---------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPDA-------ADLAGSL  339 (394)
T ss_pred             HHHHHHHHhc---------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCc-------hHHHHHH
Confidence            7666666544                     14455555555667766654444444445533343       8888999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      +....|+|..+|..++|.+.+++|+....++.++..++++++.+...+
T Consensus       340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988888777665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.39  E-value=1.5e-11  Score=115.14  Aligned_cols=162  Identities=14%  Similarity=0.054  Sum_probs=113.8

Q ss_pred             HHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcc
Q 022608           45 MISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQ  124 (294)
Q Consensus        45 l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~  124 (294)
                      ..+++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..++.+++........ ..       
T Consensus       306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------  376 (481)
T TIGR00879       306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-TG-------  376 (481)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-CC-------
Confidence            33444467899998888888889999999999999999998 9999999988877777666653220000 00       


Q ss_pred             ccccccchhHHHHH-HHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeecc
Q 022608          125 VCQEANKGQVAILY-VSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (294)
Q Consensus       125 ~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~  203 (294)
                         .........+. ...+..+++.+ ..+....++.|.+|++      .|++..+..+...++|+++++.+.+.+.++.
T Consensus       377 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~  446 (481)
T TIGR00879       377 ---SSKSSGNVAIVFILLFIAFFAMG-WGPVPWVIVSEIFPLS------LRPKGISIAVAANWLANFIVGFLFPTMLESI  446 (481)
T ss_pred             ---cccchhHHHHHHHHHHHHHHHcc-ccCeehhhhhccCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               00000122222 22222223322 3456667779999987      5999999999999999999999999988888


Q ss_pred             chhhhhhHhHHHHHHHHHHHHH
Q 022608          204 GWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       204 g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      +|++.|++.+++.+++.+...+
T Consensus       447 ~~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       447 GVGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             CccceehhHHHHHHHHHHHHhe
Confidence            9998888877776666555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.39  E-value=2.9e-11  Score=113.61  Aligned_cols=167  Identities=16%  Similarity=0.005  Sum_probs=107.5

Q ss_pred             HHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-H
Q 022608           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI-S  109 (294)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~-~  109 (294)
                      .++....+|++..++|.|+++.+|++..+.+....+..++..++.++.|+++||+ |||+.+.++.++..+..+.... .
T Consensus       252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~  330 (432)
T PRK10406        252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL  330 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence            3344677888899999999988999999998888888888888899999999998 9999887766544333322221 1


Q ss_pred             hhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHH-H
Q 022608          110 AILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGA-A  188 (294)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~i-g  188 (294)
                      ..                   ..+.........+..++.+...+....+.+|.+|++      .|+++.++.+...++ +
T Consensus       331 ~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~------~r~t~~g~~~~~g~~~~  385 (432)
T PRK10406        331 QN-------------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ------VRALGVGLSYAVANALF  385 (432)
T ss_pred             Hc-------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------ccchhhhHHHHHHHHHH
Confidence            10                   001221111112222333333456678889999998      599999997765543 3


Q ss_pred             HHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHH
Q 022608          189 ILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       189 ~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +...|.+.+.+. ..| |...+++.++..+++++..+
T Consensus       386 g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        386 GGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHH
Confidence            445777777553 345 44445544444444444433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.39  E-value=4.4e-11  Score=114.37  Aligned_cols=179  Identities=12%  Similarity=0.031  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHH-HHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLT-NFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      +.+....++.....+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |+|+.+.++.++..++.
T Consensus       225 ~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        225 WLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence            33343445555555556677888988889999999999874 55678889999999999998 99988877666555544


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      +........                  ..+...+.+..++..+..|...+...++..+..+++.      .++.++..+.
T Consensus       304 l~~~~l~~~------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s  359 (491)
T PRK11010        304 AGYWLLSIT------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSA  359 (491)
T ss_pred             HHHHHHHhc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Confidence            333222100                  0123333334444444444445666788888888873      7788888888


Q ss_pred             HHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       184 ~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      ..++|..+++.+.|++.+.+||+..|.+.+++.+++++.....++
T Consensus       360 ~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        360 LSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999988889999999899999898888877777666555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.37  E-value=1.8e-11  Score=115.13  Aligned_cols=178  Identities=13%  Similarity=0.099  Sum_probs=118.9

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .++.+....++.....+++.+++|.|+++..|++..++++......+...++.+++|+++||+ |+++....+..+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence            344555566666677788889999999988899999999999999999999999999999998 7544333333222221


Q ss_pred             HHHHH-HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          103 MICLT-ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       103 ~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      .+... ... .+                 ..+.+......++.|++..+..........|.+|++      .|+++.+++
T Consensus       331 ~~~~~~~~~-~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~  386 (438)
T TIGR00712       331 TIAVIVYWM-NP-----------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGFT  386 (438)
T ss_pred             HHHHHHHHh-cC-----------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChh------heeeehhhh
Confidence            11111 111 00                 012232333344445443332223334567889987      599999999


Q ss_pred             HHHHHHHH-HHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          182 YFVMGAAI-LVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       182 ~~~~~ig~-~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      +...++|+ +++|.+.|.+.+..||...|.+.+++.+++.+..+.
T Consensus       387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            88888875 689999999999889998888777666555544443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.36  E-value=2.3e-11  Score=114.39  Aligned_cols=145  Identities=14%  Similarity=0.183  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHH
Q 022608           61 ANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVS  140 (294)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (294)
                      +.+++.+.++.++|+++.|+++||+ |||..++++.++..++.++..++...                   ....+++++
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------~~~e~li~G  122 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------PSFEMLILG  122 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------hhHHHHHHH
Confidence            4567888999999999999999998 99999999999888888777776522                   267889999


Q ss_pred             HHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhh-hee-eccchhhhhhHhHHHHHH
Q 022608          141 LLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV-YIQ-DNIGWGWGLGIPTFAMFL  218 (294)
Q Consensus       141 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~-~l~-~~~g~~~~f~~~~~~~~~  218 (294)
                      |++.|+..|......+.|+.|+.|++      .||......+++.++|..++..++. .+. +...|++.+.+..+..++
T Consensus       123 R~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~  196 (485)
T KOG0569|consen  123 RLIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL  196 (485)
T ss_pred             HHHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999      6999999999999999999966543 333 455698888887776555


Q ss_pred             HHHHH--HHhcccee
Q 022608          219 SIIAF--LIGYPLYR  231 (294)
Q Consensus       219 ~~~~~--~~~~~~~~  231 (294)
                      .++..  +.+.|++.
T Consensus       197 ~l~~l~~~PESPk~L  211 (485)
T KOG0569|consen  197 QLALLPFLPESPKYL  211 (485)
T ss_pred             HHHHHhcCCCCcchH
Confidence            54433  33445543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.35  E-value=5.2e-11  Score=107.20  Aligned_cols=161  Identities=12%  Similarity=0.075  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhh--cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQ--LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      ..+...+..++....-.++.++++.|+.+.  +|++..+++...+.+.++..++.++++++.||+ |+|+++.++.++.+
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~  219 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            344433444443334556778899999753  799999999999999999999999999999998 99999888877777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.++.....                      ....+ .+.++.|++.+...|...+...+.+|++       .+++.+.
T Consensus       220 ~~~~l~~~~~----------------------~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-------~~~asai  269 (310)
T TIGR01272       220 LLSIGAALTH----------------------GYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-------TSQGSGI  269 (310)
T ss_pred             HHHHHHHHcC----------------------CHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhhhHHH
Confidence            6664443322                      11222 3455778999999999999999988875       3333444


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFA  215 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~  215 (294)
                      . ....+|+++.|.+.|.+.+..|.+.+|++..++
T Consensus       270 ~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       270 L-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             H-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3 466789999999999999988888887755443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.34  E-value=3.6e-11  Score=112.39  Aligned_cols=164  Identities=8%  Similarity=-0.034  Sum_probs=113.6

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhh-hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHH-HHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT-ITIASIIYQ  100 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~-l~~~~~~~~  100 (294)
                      ..+......++....++++.+++|.|+++ ..+.+..+++.......++..++.+++|+++||+ |||+. +....++..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~  321 (412)
T TIGR02332       243 AIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAA  321 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHH
Confidence            34555666777788888899999999976 3477888999999999999999999999999998 87764 333333333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.++. ...                   .  +......+..+.++|.....+.......|.+|++      .|++++++
T Consensus       322 ~~~~~~-~~~-------------------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~a~g~  373 (412)
T TIGR02332       322 AGWLLA-SAT-------------------D--HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQ------ARAIAIAV  373 (412)
T ss_pred             HHHHHH-Hhc-------------------C--CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchH------HHHHHHHH
Confidence            332211 111                   0  1111122222333444333344445556777776      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFA  215 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~  215 (294)
                      .+...++|+.++|.+.+.+.+..| |++.|++.+++
T Consensus       374 ~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       374 INATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            999999999999999999988775 88888766553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10504 putative transporter; Provisional

Probab=99.34  E-value=5.8e-11  Score=112.49  Aligned_cols=157  Identities=10%  Similarity=0.044  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .+...+...++..+.+.......|.|++..+|.+..++++......+...++.++.|+++||+ |||+++..+.++..++
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~  340 (471)
T PRK10504        262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV  340 (471)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            344455556666666555556678888878899999999998888888888889999999998 9999999888877766


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      ..++....                   ...+.+.+.+..++.|++.+...+....+..+.+|++      .++..+++++
T Consensus       341 ~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~  395 (471)
T PRK10504        341 SLLFMLVA-------------------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLLS  395 (471)
T ss_pred             HHHHHhcc-------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHHH
Confidence            65554422                   0112333444556667888887888888888988887      4999999999


Q ss_pred             HHHHHHHHHHHHhhhheeeccch
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGW  205 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~  205 (294)
                      ....+|..+|+.+.+.+.+..|+
T Consensus       396 ~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        396 MIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999998877655544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.34  E-value=1.3e-10  Score=110.13  Aligned_cols=178  Identities=16%  Similarity=-0.003  Sum_probs=120.4

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHH--------H
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWT--------I   92 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~--------l   92 (294)
                      ++.++.+.+..++....++.+.+++|.|+++.+|.+..+.++......++..++.+++|+++||+ ++|+.        +
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            34567777888888888888899999999999999999999999999999999999999999997 64421        1


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhh
Q 022608           93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (294)
Q Consensus        93 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  172 (294)
                      ..+......+...+.... ..                  .......+...+.+.+.++..+.......|..|.       
T Consensus       339 ~~~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------  392 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPY-LS------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-------  392 (465)
T ss_pred             HHHHHHHHHHHHHHHHHH-cC------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-------
Confidence            111111111111111111 00                  0222333334444444454444444555566554       


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhheeecc---chhhhhhHhHHHHHHHHHHHHH
Q 022608          173 KTWKYFNWYYFVMGAAILVAVTVLVYIQDNI---GWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       173 ~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      .+|...+..+...++|+.++|.+.+++.+..   +|...|.+.++..+++.+++..
T Consensus       393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            4999999999999999999999999887643   3777888777666666555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.34  E-value=2.8e-11  Score=110.17  Aligned_cols=185  Identities=14%  Similarity=0.049  Sum_probs=138.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +..|.+....+..--++.++..+++.|++++++.++.+++.+.....+...+..+++|+|+||+ |.+|++++....+++
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~~  296 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMAL  296 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHHH
Confidence            4455555555555556667788999999999999999999999999999999999999999998 999988888888777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +..++....  +.             .....+....++..+..++..|.-+..+..++...+|.+       .|...++.
T Consensus       297 ~~~~l~~~~--~~-------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~v  354 (417)
T COG2223         297 AAALLSLFL--TG-------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIV  354 (417)
T ss_pred             HHHHHHccc--cc-------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHH
Confidence            777666532  00             000123444444445556666666667778888888774       88889998


Q ss_pred             HHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHHHhccc
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGYPL  229 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~  229 (294)
                      ....++|+..-|...+...+.+| +...|++...+.+++.++.+....+
T Consensus       355 ga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         355 GAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88999999888888888887777 7788888777777776655554433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.34  E-value=6e-11  Score=102.88  Aligned_cols=169  Identities=14%  Similarity=0.041  Sum_probs=134.0

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHH-HH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITI-AS   96 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~-~~   96 (294)
                      +.....+|.+.++.++..++++=+.+.-+.++++.+|+|+..++.+.+...+...+.+++.|.++||+ |++-.... ++
T Consensus       260 ~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~  338 (459)
T KOG4686|consen  260 NTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASAC  338 (459)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHH
Confidence            45556788888888888888887778889999999999999999999999999999999999999999 98855444 45


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus        97 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      +....+...+.+..                        +.-+.+..+.|+..........+.++-..|++      +.|+
T Consensus       339 ~~tl~~H~~l~Ft~------------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~------qLGT  388 (459)
T KOG4686|consen  339 ILTLLGHSGLFFTF------------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE------QLGT  388 (459)
T ss_pred             HHHHHHhhhHHhhh------------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH------Hhcc
Confidence            55666766666654                        22344555667777777777888889999988      5999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeccc---hhhhhhHhHHHHH
Q 022608          177 YFNWYYFVMGAAILVAVTVLVYIQDNIG---WGWGLGIPTFAMF  217 (294)
Q Consensus       177 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g---~~~~f~~~~~~~~  217 (294)
                      +++..+...|+|-.+.|++++.+.+.-|   |--.|.+....+.
T Consensus       389 aygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~a  432 (459)
T KOG4686|consen  389 AYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMA  432 (459)
T ss_pred             hHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHH
Confidence            9999999999999999999999987655   3344544444333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.33  E-value=1.4e-10  Score=111.32  Aligned_cols=181  Identities=14%  Similarity=0.073  Sum_probs=140.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.+-.++...+..+++......-++-++. +..-|+...+++.....+-..+.++++|.++||+ .||++++.+-++..+
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            34445556666666666555444544443 4577889999999999999999999999999998 999999999887766


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      ..+.+.+....                 ...+.+.+++..++.|++.+...|...+++.|+.|++      +...+.++.
T Consensus        88 ~~~~L~~l~~~-----------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~  144 (524)
T PF05977_consen   88 VALLLAVLAFF-----------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALN  144 (524)
T ss_pred             HHHHHHHHHHh-----------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHH
Confidence            65555543311                 1226788888889999999999999999999999987      488889999


Q ss_pred             HHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      +...|+...+||.++|.+....|-.+.|.+-++..++.++.+...+
T Consensus       145 s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~  190 (524)
T PF05977_consen  145 SISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWK  190 (524)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999988888888888887776555544444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.33  E-value=3.3e-10  Score=105.27  Aligned_cols=169  Identities=10%  Similarity=-0.113  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .++......++.....+......|.|+++.+|++..+.+.......++..++.++.|+++||+ |+|+.+.++.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            344444444445555555666678888888999999998888777788889999999999998 9999999988877777


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      ..+........                 ..+.+.+.++.++.|+|.+...+..........+ +      .+|+..+.++
T Consensus       295 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~------~~g~~~~~~~  350 (406)
T PRK15402        295 LLLAALATVIS-----------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-V------SKGTVSAAMG  350 (406)
T ss_pred             HHHHHHHHHcc-----------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-c------cccHHHHHHH
Confidence            76665532000                 1134455667778888888776665555544333 3      4999999999


Q ss_pred             HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHH
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~  216 (294)
                      +...+|..+|+.+.+++.+..++....+...+..
T Consensus       351 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~  384 (406)
T PRK15402        351 MLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANG  384 (406)
T ss_pred             HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence            9999999999999999887777665444444333

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.33  E-value=6.1e-11  Score=107.42  Aligned_cols=153  Identities=12%  Similarity=0.088  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHHHHHhHHhhH-HHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFN-TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      .++.+....++....++... .+.|.|.++.+|.+..+.+.+.....++..++.++.+++.||+ |||+.+..+..+..+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  289 (365)
T TIGR00900       211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGL  289 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence            44445555555566655555 6677887777999999999999999999999999999999998 999998887666666


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +........                    + +.+.+.+..++.|++.+...+....++.|.+|++      .|++..+.+
T Consensus       290 ~~~~~~~~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~  342 (365)
T TIGR00900       290 AILVVGLTP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE------LLGRVFGAQ  342 (365)
T ss_pred             HHHHHHhhc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHH
Confidence            655554433                    1 2566677788889999999999999999999987      599999999


Q ss_pred             HHHHHHHHHHHHHhhhheeecc
Q 022608          182 YFVMGAAILVAVTVLVYIQDNI  203 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~  203 (294)
                      +...++|..+++.+.+++.+.+
T Consensus       343 ~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       343 FSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999887654

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.32  E-value=9.6e-12  Score=111.70  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhH
Q 022608           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (294)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (294)
                      .+..-+|.+.+.++++..+.++.+|.++||+ |||++++++++..++...+.+.+.                      +.
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~----------------------~F  121 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR----------------------NF  121 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH----------------------HH
Confidence            3446678899999999999999999999999 999999999999888888887776                      66


Q ss_pred             HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee
Q 022608          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       135 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~  201 (294)
                      ..+.++|++.|+.-|-.. ++.++++|.++++      .|+..++.+..+..+|-.+||.+++++..
T Consensus       122 ~afv~aR~l~Gi~kgnl~-v~rAiisdV~sek------~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKGNLS-VIRAIISDVVSEK------YRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhhhccCchH-HHHHHHHhhcChh------hccceeeeeehhhhcchhhcchhhhHHHh
Confidence            677788999999888654 6699999999998      49999999999999999999999999877

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.31  E-value=1.6e-10  Score=106.80  Aligned_cols=168  Identities=8%  Similarity=0.032  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      .+..+...++.....+...+++++|+++.+|++..+.+.+.....++..++.++.|+++||+ |+|+.+..+..+..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            33344444444455555566778888888999999999999999999999999999999998 99999988887777776


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      ++.....                   +  +.+...+..++.++|.+...+.......+..++.+     .++...  .+.
T Consensus       280 ~~~~~~~-------------------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~  331 (382)
T PRK10091        280 LMLFFFG-------------------G--MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE-----LLGAAG--GQI  331 (382)
T ss_pred             HHHHHHH-------------------h--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch-----HHHHHH--HHH
Confidence            5544322                   0  22333444445555554444433333333333221     244433  355


Q ss_pred             HHHHHHHHHHHhhhheeec-cchhhhhhHhHHHHHHHH
Q 022608          184 VMGAAILVAVTVLVYIQDN-IGWGWGLGIPTFAMFLSI  220 (294)
Q Consensus       184 ~~~ig~~~~~~~~~~l~~~-~g~~~~f~~~~~~~~~~~  220 (294)
                      ..++|..+||.++|++.+. .+|+..+.+.++...+..
T Consensus       332 ~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~  369 (382)
T PRK10091        332 AFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAM  369 (382)
T ss_pred             HHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHH
Confidence            6789999999999988874 678888888776655444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.31  E-value=2e-10  Score=107.17  Aligned_cols=143  Identities=15%  Similarity=0.039  Sum_probs=105.1

Q ss_pred             HHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022608           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRP  117 (294)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~  117 (294)
                      .+.+..++|.|+++ .|++..+.+.......++..++.+++|+++||+ |||+.+..+.++..+..+.+....       
T Consensus       247 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~-------  317 (426)
T PRK12307        247 NWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP-------  317 (426)
T ss_pred             HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc-------
Confidence            33456778888875 699999999988888999999999999999998 999999888776655544433221       


Q ss_pred             CCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 022608          118 PPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (294)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~  197 (294)
                                   ......+....+..+++..+..+..+.++.|.+|++      .|++..+..+....+|+.++|.+.+
T Consensus       318 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~~~~~gp~~~g  378 (426)
T PRK12307        318 -------------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLE------VRGLGTGLIYNLAATSGTFNSMAAT  378 (426)
T ss_pred             -------------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHH------HHhhhhhHHHHHHhHHHHHHHHHHH
Confidence                         001222222222223333344566778889999987      5999999999999999999999999


Q ss_pred             heeeccchhhh
Q 022608          198 YIQDNIGWGWG  208 (294)
Q Consensus       198 ~l~~~~g~~~~  208 (294)
                      ++.+.+|+...
T Consensus       379 ~l~~~~g~~~~  389 (426)
T PRK12307        379 WLGITMGLGAA  389 (426)
T ss_pred             HHHHcccHHHH
Confidence            99888876543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.30  E-value=2.4e-10  Score=105.55  Aligned_cols=166  Identities=8%  Similarity=-0.009  Sum_probs=124.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.++.+....++....+.....+++.|++ +.|++..+.+.+.+...+...+..++.|++.||+ |+|+.+..+.++..+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            34455555555555666666777888985 5899999999998888888888889999999998 999999988888777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +.+......                      +.+.+++..++.|++.+...+....+..+. +++      ++++..+.+
T Consensus       283 ~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~  333 (382)
T PRK11128        283 RWGLMGSTT----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGS------EVIRLQALY  333 (382)
T ss_pred             HHHHHHhhh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHh------hhHHHHHHH
Confidence            766555444                      667777788888998888888888887776 333      367778877


Q ss_pred             H-HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHH
Q 022608          182 Y-FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       182 ~-~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  219 (294)
                      + ....+|..+||.++|.+.+.+|+. .|+..+++.+++
T Consensus       334 ~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~  371 (382)
T PRK11128        334 SALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence            5 456778889999999999988874 455444444333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.30  E-value=6.8e-11  Score=113.10  Aligned_cols=154  Identities=8%  Similarity=-0.031  Sum_probs=124.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.+.......++..+.+++...+++.|+++.+|.++.+++.......++..++.++.|++.||+ |+|+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3444455666666777777788899999999999999999999999999999999999999998 999999888888877


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +.+++....                   ...+.+......++.|+|.|...+.......+..|++      +++...+.+
T Consensus       338 ~~~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~g~~~~~~  392 (495)
T PRK14995        338 SFYGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE------KAAAAGAIE  392 (495)
T ss_pred             HHHHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH------hcchHHHHH
Confidence            776655432                   1113444556677889999998888888888888877      599999999


Q ss_pred             HHHHHHHHHHHHHhhhheee
Q 022608          182 YFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~  201 (294)
                      ++..++|+.+|+.+.+.+.+
T Consensus       393 ~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        393 TMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988876643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.30  E-value=6.2e-11  Score=112.34  Aligned_cols=156  Identities=13%  Similarity=0.084  Sum_probs=124.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.++......++..+.+++...++|.|+++.+|++..++++......++..++.+++|++.||+ |||+.+.++.++..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            3444455666677777788888899999999999999999999999999999999999999998 999999998887777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +..++.... .                 .....+.+....++.|+|.+...+.......+.+|++      .++++.+.+
T Consensus       334 ~~~~~~~~~-~-----------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~------~~g~~~~~~  389 (485)
T TIGR00711       334 GFYWRAFTF-T-----------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPH------KIARGSSLS  389 (485)
T ss_pred             HHHHHhccC-C-----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHhHHHHHH
Confidence            776655221 0                 1124455556677889998888777777778888876      599999999


Q ss_pred             HHHHHHHHHHHHHhhhheeec
Q 022608          182 YFVMGAAILVAVTVLVYIQDN  202 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~  202 (294)
                      +...++|+.+|+.+.+.+.++
T Consensus       390 ~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       390 NFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888876553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.27  E-value=1.6e-10  Score=109.73  Aligned_cols=151  Identities=13%  Similarity=0.102  Sum_probs=122.5

Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 022608           50 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEA  129 (294)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~  129 (294)
                      +++.++...+-+.+.+++.+++.++.+++|.|.||+ .-.+.+....++..+-.++.....                   
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~-------------------  132 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH-------------------  132 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            367788899999999999999999999999999998 866666655555444443333344                   


Q ss_pred             cchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe------eecc
Q 022608          130 NKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI------QDNI  203 (294)
Q Consensus       130 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l------~~~~  203 (294)
                         +.+.+++.|++.|+..+...|....+++.+|.++      +|+..+++++.+..+|+++|.+++..+      ....
T Consensus       133 ---s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~  203 (495)
T KOG2533|consen  133 ---SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA  203 (495)
T ss_pred             ---hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence               7888999999999999999999999999999998      499999999999999999998887664      2356


Q ss_pred             chhhhhhHhHHHHHHHHHHHHHhccc
Q 022608          204 GWGWGLGIPTFAMFLSIIAFLIGYPL  229 (294)
Q Consensus       204 g~~~~f~~~~~~~~~~~~~~~~~~~~  229 (294)
                      |||+.|.+.+++.++..++.++..|.
T Consensus       204 gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  204 GWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             CceeehhHHHHHHHHHHheEEEEecC
Confidence            89999999998776665554444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.27  E-value=5.4e-10  Score=104.71  Aligned_cols=164  Identities=10%  Similarity=0.034  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcch-hHHHHHHHHHHHHHHH
Q 022608           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWTITIASIIYQIGMI  104 (294)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~l~~~~~~~~i~~i  104 (294)
                      .+-...++...++-.+.++++.|+++++|++..+.+++.+...++..++++++|.++||+ || |+++.++.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence            344556666666666778999999999999999999999999999999999999999998 65 7777777776666665


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh--hhhhhhhhHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP--KQATKTWKYFNWYY  182 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~--~~~~~rg~~~~~~~  182 (294)
                      +..+..                      +.+.+.+.+++.+++.+...+...+...+...++..  .+.-.|.+.++   
T Consensus        85 ~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G---  139 (418)
T TIGR00889        85 FAAQVT----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG---  139 (418)
T ss_pred             HHHHhc----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh---
Confidence            555443                      566777778888887666655544433221110000  00002333343   


Q ss_pred             HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHH
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  219 (294)
                         .+|.++++.+++.+.....|.+ |++.++..++.
T Consensus       140 ---~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~  172 (418)
T TIGR00889       140 ---TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALL  172 (418)
T ss_pred             ---hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHH
Confidence               3677788888777643333443 44444444333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.27  E-value=1.3e-10  Score=105.73  Aligned_cols=162  Identities=13%  Similarity=0.107  Sum_probs=115.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHH--HH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI--IY   99 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~--~~   99 (294)
                      +.++.+.+..++.....+.+..+++.|+++.+|++..+++.+.....++..++.++.|+++||..+||+.......  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            3445555666666777777888899999999999999999999999999999999999999986234433222111  11


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++........                    ..+.....+..++.|+......+....+..|.+|++      .|++..+
T Consensus       296 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g  349 (379)
T TIGR00881       296 IVSLLVYWLNP--------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKK------AAGTAAG  349 (379)
T ss_pred             HHHHHHHhcCc--------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcc------hhHHHHH
Confidence            11211111100                    113334444555566655555566677889999987      5999999


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccchhhhh
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGL  209 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f  209 (294)
                      +++...++|+.++|.+.+.+.+.+||+..|
T Consensus       350 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       350 FVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            999999999999999999999998988654

>PRK09669 putative symporter YagG; Provisional

Probab=99.27  E-value=1.1e-10  Score=109.99  Aligned_cols=170  Identities=11%  Similarity=0.110  Sum_probs=117.5

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh---cchh-HHHHHHHHHHHHHHH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRF-WTITIASIIYQIGMI  104 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr-~~l~~~~~~~~i~~i  104 (294)
                      +..+..++.+..+..+++.|+++.+|++...++.+..+..+...+..|+.|+++||.   +||| +.++.+.+...++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            445566666667778899999999999999999999999999999999999999993   3775 555566666666655


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  184 (294)
                      ++...   |...             .....+.+++..++.+++......+..++.+|+.++.+     +|++..++....
T Consensus        96 l~f~~---p~~~-------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r~~~  154 (444)
T PRK09669         96 LTFYT---PDFG-------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWRFAL  154 (444)
T ss_pred             HHHhC---CCCC-------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHHHHH
Confidence            44332   2110             11234455555566676666777788899999876543     588888888888


Q ss_pred             HHHHHHHHHHhhhheee-------ccchhhhhhHhHHHHHHH
Q 022608          185 MGAAILVAVTVLVYIQD-------NIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       185 ~~ig~~~~~~~~~~l~~-------~~g~~~~f~~~~~~~~~~  219 (294)
                      .++|+.+++.+...+..       ..||+..+.+.+++..+.
T Consensus       155 ~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~  196 (444)
T PRK09669        155 SFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL  196 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence            88887777654433221       235666665555544443

>TIGR00895 2A0115 benzoate transport

Probab=99.27  E-value=2.1e-10  Score=105.18  Aligned_cols=147  Identities=14%  Similarity=0.062  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      ..+.+....++....++....++| ++.+++|.+..+.+.+.....++..++.++.|+++||+ |||+.+....+..+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence            344444555566677777777777 66678899999999999999999999999999999998 9985544433333333


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      .++.....                      +.+...+..++.|++.+...+...+++.|.+|++      .|++..++++
T Consensus       329 ~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~  380 (398)
T TIGR00895       329 VLVGSTLF----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTA------IRATGVGWAI  380 (398)
T ss_pred             HHHHHHhh----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH------HHHHHHHHHH
Confidence            22222122                      3455566677889999988999999999999987      5999999999


Q ss_pred             HHHHHHHHHHHHhhhhe
Q 022608          183 FVMGAAILVAVTVLVYI  199 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l  199 (294)
                      ....+|..++|.+.|++
T Consensus       381 ~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       381 GIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHhHHhc
Confidence            99999999999998865

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.26  E-value=5.3e-10  Score=103.43  Aligned_cols=174  Identities=15%  Similarity=0.036  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .+..+...++.........++.+.|+++ .|++..+.+.+...... ...++.+++|++.||+ |+|+.+..+.++..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  287 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL  287 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            4444455556666666666778888875 79999999998887765 5556789999999998 9999998877665333


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      ...........                .......++...++.+++.+...+...+...+..++++     .+++.++.++
T Consensus       288 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~  346 (390)
T TIGR02718       288 ALLWFAQAAFW----------------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQ  346 (390)
T ss_pred             HHHHHHHHHcc----------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHH
Confidence            32222211000                00022333333444456666666777777777766522     5899999999


Q ss_pred             HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHH
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSI  220 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (294)
                      ...++|..++|.++|++.+..|++..|.+.+++.+++.
T Consensus       347 ~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       347 STRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            99999999999999999998899888887766555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.26  E-value=9e-10  Score=100.92  Aligned_cols=162  Identities=11%  Similarity=0.070  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      .+...+...+....++....+.|.|+++++|+++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~  286 (385)
T TIGR00710       208 FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSA  286 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            34444444455556666677778888888999999999999999999999999999999998 99999988877777776


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      +++......+                 ......+.+..++.|++.+...+.......|.+|.       ++++..+.++.
T Consensus       287 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~  342 (385)
T TIGR00710       287 VLLEITAILG-----------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-------VAGTASALFGT  342 (385)
T ss_pred             HHHHHHHHhc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cchHHHHHHHH
Confidence            6655433100                 01234445556677888888888888888888774       38888888877


Q ss_pred             HHHHHHHHHHHhhhheeeccchhhhhh
Q 022608          184 VMGAAILVAVTVLVYIQDNIGWGWGLG  210 (294)
Q Consensus       184 ~~~ig~~~~~~~~~~l~~~~g~~~~f~  210 (294)
                      ....++.+.+.+.+.+.+..+|...+.
T Consensus       343 ~~~~~g~i~~~~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       343 LRLVLGAIVGYLVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHhccccChHHHHHH
Confidence            765544444444455555444544333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.26  E-value=2.6e-10  Score=106.74  Aligned_cols=161  Identities=17%  Similarity=0.110  Sum_probs=119.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      |.++.++...++....++......+.|.+..++ +....+.+.....+...++.++.++++||+ |||+++.++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            345555566666666666655555566655555 556677777778888889999999999998 999999999888777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChh-hhhhhhhHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNW  180 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~rg~~~~~  180 (294)
                      +.+.+.+..                     .+.+.+.+..++.+++.+...+...++++|..+.++-+ +++++|..++.
T Consensus       300 ~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  358 (437)
T TIGR00792       300 GYLIFFFAG---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV  358 (437)
T ss_pred             HHHHHHHcc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence            766655432                     13455566667788999988899999999987754311 12257999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccch
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGW  205 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~  205 (294)
                      +++...+|..+++.+.+++.+..||
T Consensus       359 ~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       359 RTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999888766555

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.25  E-value=2.7e-10  Score=105.56  Aligned_cols=169  Identities=13%  Similarity=0.094  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhc---CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQL---HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      ++.+....++....+.....+++.|+++.+   +.+....+.+.++..+...++.+..|++.||+ |||+.+.++.++..
T Consensus       217 ~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~  295 (396)
T TIGR00882       217 FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHH
Confidence            333334444444444445556778877654   55666778888888888888899999999998 99999999888777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++..+.....                      +.+.+++..++.|++..........+..+..+++      .+++..+.
T Consensus       296 l~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~at~~~~  347 (396)
T TIGR00882       296 VRIIGSSFAT----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVR------LSATIYLI  347 (396)
T ss_pred             HHHHHHHhcC----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------eEEEeehH
Confidence            7766555433                      4555666777888876655555556667777766      36665554


Q ss_pred             -HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          181 -YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       181 -~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                       ++....+|+.+++.+.|++.+..||+..|.+.+++.++..+
T Consensus       348 ~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       348 GFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence             66788999999999999999989999999887776655443

>TIGR00896 CynX cyanate transporter

Probab=99.25  E-value=4.5e-10  Score=102.48  Aligned_cols=154  Identities=10%  Similarity=-0.005  Sum_probs=115.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +..+.+....++....++....++|.|+++ .|++..+.+.+.+...++..++.++.|+++||+-+||+.+.++.++..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            344555555566677777888899999975 7999999999999999999999999999999972356666777777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +.+.+....                      +.... ...++.|++.|...+...+.+.+..++++     +++...+..
T Consensus       276 ~~~~~~~~~----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~  327 (355)
T TIGR00896       276 GLCGLLFAP----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMA  327 (355)
T ss_pred             HHHHHHHhh----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHH
Confidence            766555433                      11111 13456789998888877777766555432     578888888


Q ss_pred             HHHHHHHHHHHHHhhhheeeccc
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIG  204 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g  204 (294)
                      +...++|..++|.+.|++.+..|
T Consensus       328 ~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       328 QSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888999999999999887765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.25  E-value=1.1e-09  Score=103.89  Aligned_cols=156  Identities=13%  Similarity=0.039  Sum_probs=108.1

Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 022608           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (294)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  123 (294)
                      +.|.++ +..|++.....+......+...++.+++|+++||+ |||+.++.+.++..++.+++......+          
T Consensus       293 ~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~----------  360 (479)
T PRK10077        293 YAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ----------  360 (479)
T ss_pred             HHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC----------
Confidence            334443 56888877777777777788889999999999998 999999999998888877766432100          


Q ss_pred             cccccccchhHHHHHHHHHHHHHhccC-cchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhh-----
Q 022608          124 QVCQEANKGQVAILYVSLLLAALGSGG-IRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV-----  197 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~-----  197 (294)
                             . .......+.++.+++.+. ..+....+++|.+|++      .|++++++.+...++|..+++.+.+     
T Consensus       361 -------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~  426 (479)
T PRK10077        361 -------A-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWIANYFVSWTFPMMDKN  426 (479)
T ss_pred             -------c-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence                   0 111222233344444433 3366789999999987      5999999998888888888765544     


Q ss_pred             -heeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          198 -YIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       198 -~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                       ++.+..+|+..|++.++..+++.+..+.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (479)
T PRK10077        427 SWLVAHFHNGFSYWIYGCMGVLAALFMWK  455 (479)
T ss_pred             cchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence             3445678887887776655555444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.25  E-value=8.4e-11  Score=112.39  Aligned_cols=172  Identities=16%  Similarity=0.143  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHhHHhhH---HHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFN---TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~---~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      +.+..|+.++..+++.   ..+-..+++.++.+..+++++.++...+..+..|+.+.+.||+ |.|.+++.|.++..+|+
T Consensus        47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~g~  125 (509)
T KOG2504|consen   47 VVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAALGL  125 (509)
T ss_pred             eeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHHHH
Confidence            3444444444444433   2455667789999999999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHH-HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      ++..++.                      +.+.+++.. ++.|+|.|....+....++..|.+       +|+.+.+.-.
T Consensus       126 ~lssF~~----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-------kR~lA~Gia~  176 (509)
T KOG2504|consen  126 LLSSFAT----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-------KRALATGIAV  176 (509)
T ss_pred             HHHHHHh----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-------HHHHHHhhhh
Confidence            9999887                      677776655 677999999999988999988887       4999999988


Q ss_pred             HHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          183 FVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      .+..+|..+-|.+.-++.+.+|||..+++...+.+-.++.....+|
T Consensus       177 ~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  177 SGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             ccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8888888888888889999999999988887776555555555444

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.24  E-value=1.3e-09  Score=101.23  Aligned_cols=164  Identities=11%  Similarity=0.018  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .++......++.....++...++++++.+++|++..+.+.......++..++.++.|++.||. +++..+. +.++..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~~  294 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHHH
Confidence            344444444444455555556665555567899999999999999999999999999999995 5554444 33333333


Q ss_pred             -HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          103 -MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       103 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                       .++.....                      +.+.+.+..++.|++.+...+....++.+..|++       .++..+.+
T Consensus       295 ~~~l~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  345 (394)
T PRK10213        295 ALVLTLWGS----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQ  345 (394)
T ss_pred             HHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHH
Confidence             33322222                      4556666778889999988888888888888753       55556666


Q ss_pred             HHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHH
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMF  217 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~  217 (294)
                      +...++|..+|+.++|++.+..|++..+...+++..
T Consensus       346 ~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        346 VAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            677789999999999999998888877777665443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.23  E-value=5e-10  Score=106.48  Aligned_cols=171  Identities=11%  Similarity=0.122  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc-----hhHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG-----RFWTITIASII   98 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~~l~~~~~~   98 (294)
                      ...+....+.+.+. +.....++.++++++|++.++.+...+...+...+-.+ +|+++||+ +     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHH
Confidence            33444567778888 77777888999989999999999998888888887555 99999998 7     77777777655


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      .. ......+.. .                  ........+.+++.+++.+......-++..|..+ +++   +.++...
T Consensus       105 ~~-~~~~~~l~~-~------------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~~~~  160 (468)
T TIGR00788       105 GS-AILYGLLPG-K------------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGPSLV  160 (468)
T ss_pred             HH-HHHHHhccc-c------------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCCCee
Confidence            42 111121211 0                  0122333346778899999999999999999998 431   1344556


Q ss_pred             HHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          179 NWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      ++.+.+.++|..+++.++|++.+.++|+..|++.+++.++..+
T Consensus       161 s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       161 SWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            6677777899999999999999989999999888777665543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.23  E-value=6.1e-10  Score=104.92  Aligned_cols=185  Identities=13%  Similarity=0.086  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      ..|.+.++.++..-++.++..++|.|+++.+  +............+...+..+++|+++||+ |+++++.++.+...++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence            4555555666666666667678999988755  333333344556677888999999999998 9999999998877776


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCC-----------CC----
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDE-----------TD----  167 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-----------~~----  167 (294)
                      ........  |.-              ...+.+.+.+..++..++.|.-++.+..++.+.||+           ++    
T Consensus       330 ~~~~~l~l--p~~--------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~  393 (462)
T PRK15034        330 SALLFLTL--PGT--------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQ  393 (462)
T ss_pred             HHHHHHHh--ccc--------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHh
Confidence            64443322  210              012455555555665677777777888888888874           10    


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHHHh
Q 022608          168 PKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       168 ~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                      ...+++.|...|+......+|+++-|.+.+...+.+| +...|+...+..+++.++-+..
T Consensus       394 ~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        394 REAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            0112357788888888889999999988776665544 6677777777666665554443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.23  E-value=1.7e-10  Score=105.31  Aligned_cols=174  Identities=14%  Similarity=0.152  Sum_probs=141.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.+...++..++.+=+..++.+.-..|-.+.+|++..+..++....+++..++++++|+|.||+ |-|++++++++++.+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            3555555666666666667777788999999999999999999999999999999999999998 999999999888877


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      ..+...+..                      ....+++.-++.|+..|+.++..=++.++..|++      +-+++++.|
T Consensus       331 ~~~~~~~~~----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~------k~~~fFgly  382 (438)
T COG2270         331 AALYLIFLE----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKG------KEGRFFGLY  382 (438)
T ss_pred             HHHHHHHcc----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc------cccceeehh
Confidence            666655544                      3445556667789999999999999999999998      599999999


Q ss_pred             HHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHH
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  224 (294)
                      ++.....+.+||+..+.+.+.+| -|..+...+++..+++++.+
T Consensus       383 altgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         383 ALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            99999999999999988877665 45666655555555554443

>PRK10133 L-fucose transporter; Provisional

Probab=99.23  E-value=5.5e-10  Score=105.32  Aligned_cols=161  Identities=14%  Similarity=0.078  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHh-hhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYL-TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~  105 (294)
                      .....++.....++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ |+|+++..+.++..++..+
T Consensus       263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~  341 (438)
T PRK10133        263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI  341 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence            33444555566666667888886 567899999999999999999999999999999998 9999998887776655544


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 022608          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (294)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~  185 (294)
                      ..+..                      +.. ......+.|++.+...|...+...|.++++       .+...+...+ .
T Consensus       342 ~~~~~----------------------~~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~~~-~  390 (438)
T PRK10133        342 SAFAG----------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIVM-T  390 (438)
T ss_pred             HHHcC----------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHHhH-H
Confidence            43322                      111 234556789999999999999999998874       3344444433 3


Q ss_pred             HHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHH
Q 022608          186 GAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLS  219 (294)
Q Consensus       186 ~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~  219 (294)
                      .+|+.++|.+.|.+.+..| -+..|++..+..+..
T Consensus       391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             hccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            4678888888898888887 677777665544433

>PRK09848 glucuronide transporter; Provisional

Probab=99.23  E-value=6.3e-10  Score=104.99  Aligned_cols=163  Identities=12%  Similarity=0.116  Sum_probs=120.4

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      |.+.......++....++......+.|+++.+|.+....+.......++..++.++.++++||+ |+|+++.++.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4455555666666666666666677788888888766555544444566778899999999998 999999999988888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChh-hhhhhhhHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNW  180 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~rg~~~~~  180 (294)
                      +.+.+.+..                    ..+.+.+.+..++.++|.+...+...++.+|..|.++-. +.++.|..++.
T Consensus       307 ~~~~~~~~~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~  366 (448)
T PRK09848        307 GYLLFFWVS--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL  366 (448)
T ss_pred             HHHHHHHcC--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence            776665422                    124555666677889999999999999999988865421 23356889999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccch
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGW  205 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~  205 (294)
                      +++...+|..+++.+.+.+.+..||
T Consensus       367 ~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        367 FSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999887766544443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.22  E-value=3.5e-10  Score=108.37  Aligned_cols=166  Identities=17%  Similarity=0.108  Sum_probs=106.3

Q ss_pred             HHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHH------------HHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHH
Q 022608           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAN------------TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (294)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~   97 (294)
                      ..++..+.+|+...+.|.+++ ..|++..+++.            ...+..++..++.+++++++||+ |||++++++.+
T Consensus       296 ~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~  373 (502)
T TIGR00887       296 SWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFF  373 (502)
T ss_pred             HHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHH
Confidence            344556777888888888885 56776442211            12233345556778899999998 99999988887


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      +..++.+++......                 .. ....+....+...++..+..+....+.+|.+|++      .|+++
T Consensus       374 ~~~~~~~~l~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~------~R~~~  429 (502)
T TIGR00887       374 ILTVLFFVLGFAYNH-----------------LS-THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR------YRSTA  429 (502)
T ss_pred             HHHHHHHHHHHHHHh-----------------cc-hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh------HHHHH
Confidence            777666555543200                 00 1111111111122222334456677789999998      69999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeec----------cchhhhhhHhHHHHHHHHH
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDN----------IGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~----------~g~~~~f~~~~~~~~~~~~  221 (294)
                      .++.+....+|++++|.+.+++.+.          .++...|++.+++.+++.+
T Consensus       430 ~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       430 HGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             HHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999988763          3344556666555555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.21  E-value=5.2e-10  Score=106.42  Aligned_cols=146  Identities=10%  Similarity=0.050  Sum_probs=106.8

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH----hhcch-hHHHHHHHHHHHHHH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD----AYAGR-FWTITIASIIYQIGM  103 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr-r~~l~~~~~~~~i~~  103 (294)
                      +..+..++.+..+..+++.|+++.+|+++..++.+..+.-+...+..|+.|+++|    |+ || |+.++++.+...++.
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHH
Confidence            4456667777777888999999999999999999999999999999999999999    65 88 566666777666666


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      +++....   ...             .....+.+.+..++.+++......+..++.+|+.++.+     +|.+..++-..
T Consensus        92 ~llf~~p---~~~-------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~  150 (473)
T PRK10429         92 FLLFSAH---LFE-------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRF  150 (473)
T ss_pred             HHHHcCC---CCC-------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHH
Confidence            5554321   110             11133344455566678888888888999999886543     58888887666


Q ss_pred             HHHHHHHHHHHhh
Q 022608          184 VMGAAILVAVTVL  196 (294)
Q Consensus       184 ~~~ig~~~~~~~~  196 (294)
                      ..++|+.+.+.+.
T Consensus       151 ~~~ig~~~~~~~~  163 (473)
T PRK10429        151 FASLAGFVTAGFT  163 (473)
T ss_pred             HHHHHHHHHHHHH
Confidence            6677766655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.20  E-value=3.3e-13  Score=127.01  Aligned_cols=148  Identities=20%  Similarity=0.232  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHH
Q 022608           58 TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL  137 (294)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      ...++..+...++..+|.+++|+++||+ |||++++++.++..++.++..++..                   ..+.+.+
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~~~~  105 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS-------------------YNNFWML  105 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc-------------------ccccccc
Confidence            3567889999999999999999999998 9999999999999999888777541                   1267788


Q ss_pred             HHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee---ccchhhhhhHhHH
Q 022608          138 YVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD---NIGWGWGLGIPTF  214 (294)
Q Consensus       138 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~---~~g~~~~f~~~~~  214 (294)
                      .++|++.|++.|+..+..+.++.|..|++      .|+....+.+....+|..++..+...+..   ..+||..+.+..+
T Consensus       106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~  179 (451)
T PF00083_consen  106 LIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAI  179 (451)
T ss_pred             ccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999998      59999999998888888888766544332   2459988877776


Q ss_pred             HHHHHH--HHHHHhcccee
Q 022608          215 AMFLSI--IAFLIGYPLYR  231 (294)
Q Consensus       215 ~~~~~~--~~~~~~~~~~~  231 (294)
                      ..++.+  ..+..+.|++.
T Consensus       180 ~~l~~~~~~~~~pESP~wL  198 (451)
T PF00083_consen  180 PSLLVLLLRFFLPESPRWL  198 (451)
T ss_pred             cccccccccccccccccee
Confidence            554332  23444455554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.20  E-value=6.1e-10  Score=116.47  Aligned_cols=163  Identities=10%  Similarity=0.027  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHH-HHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLT-KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      .++.+++..++.....+.+..+++.|+++.+|++.. ..+++.....++..++.+++|+++||+ ++++++.++.++..+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  311 (1146)
T PRK08633        233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLAL  311 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHH
Confidence            334444444445555556677889999999999999 999999999999999999999999998 999988888777777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +.+++....                      +.+.+++..++.|++.+...+...+++.+.+|++      .||+++++.
T Consensus       312 ~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~rg~~~~~~  363 (1146)
T PRK08633        312 SLFLLPTAP----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK------ELGKVLAAN  363 (1146)
T ss_pred             HHHHHHHhh----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc------chhhhhHHH
Confidence            766665544                      5566667778889999988888899999999988      599999999


Q ss_pred             HHHHHHHHHHHHHhhhheee-ccchhhhhhHhHH
Q 022608          182 YFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTF  214 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~-~~g~~~~f~~~~~  214 (294)
                      ++..++|.++++.+++.+.. .+++...|++.+.
T Consensus       364 ~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~  397 (1146)
T PRK08633        364 NFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL  397 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            99999998888777665433 2334444444333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.19  E-value=1.2e-09  Score=104.89  Aligned_cols=172  Identities=15%  Similarity=0.131  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      +..++...++.++....+...+|.+.++.+|.+....|++.+...++..++.++.+++.+|+ ++++.+..+.++..++.
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL  298 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence            33344444455555445556688888899999999999999999999999999999999997 99999888888888777


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      +.+.+..                      +.+...+..++.|++.........+.+.+..|++      .||+.++.+++
T Consensus       299 ~~lal~~----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~------~~GRv~si~~~  350 (524)
T PF05977_consen  299 LLLALSP----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDW------VRGRVFSIYQM  350 (524)
T ss_pred             HHHhcch----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHhHHHHHHHH
Confidence            7777655                      6677777788889988888888888888989988      59999999999


Q ss_pred             HHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          184 VMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       184 ~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      ....+..+|.++.|.+.+.+|.+..+.+.++..+++.++..
T Consensus       351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888877766555544443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.18  E-value=7.2e-10  Score=104.00  Aligned_cols=163  Identities=17%  Similarity=0.150  Sum_probs=133.2

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .|.+..++...++..+.+......++.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |+|+++..+.++.+
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~  301 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAA  301 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHH
Confidence            356667777788888887777778888888888877 5566777788888999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChh-hhhhhhhHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFN  179 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~rg~~~~  179 (294)
                      ++.+++.+..                    ..+.+.+++..++.|++.+.......++++|..+.++.+ ++++.|..++
T Consensus       302 ~~~~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s  361 (428)
T PF13347_consen  302 LGFLLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS  361 (428)
T ss_pred             HHHHHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence            9888877754                    126778888888999999999999999999999866532 3446799999


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccch
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIGW  205 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g~  205 (294)
                      .+.....+|..++..+.+.+.+..|+
T Consensus       362 ~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  362 VNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999887776554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.17  E-value=4e-09  Score=98.08  Aligned_cols=152  Identities=10%  Similarity=0.168  Sum_probs=102.8

Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHH-HHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 022608           43 TNMISYLTTQLHMPLTKAANTLTNFG-GTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (294)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~  121 (294)
                      .+.+.|+.+++|++..+.+++..... ....++.+++|++.||+ |||+.+..+.++..+..+.+......+        
T Consensus       230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~--------  300 (402)
T PRK11902        230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP--------  300 (402)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            34556777789999999998876654 45788899999999998 999988777766555544333222011        


Q ss_pred             CccccccccchhHHHHHHHH----HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 022608          122 GEQVCQEANKGQVAILYVSL----LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (294)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~  197 (294)
                                .+.+.+.+..    +..+++.+...+....++.+.+|.++      ++    .++...++|..++..++|
T Consensus       301 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        301 ----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------YA----LLSALASVGRVYVGPTSG  360 (402)
T ss_pred             ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------HH----HHHHHHHHHHHHHHHHHH
Confidence                      0233333333    34556666667777778888777652      33    333344566665666788


Q ss_pred             heeeccchhhhhhHhHHHHHHHHHHH
Q 022608          198 YIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       198 ~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      .+.+..||+..|.+.+++.++++++.
T Consensus       361 ~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        361 YLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            99999999998988887776665444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.17  E-value=4e-09  Score=94.65  Aligned_cols=167  Identities=16%  Similarity=0.104  Sum_probs=136.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +..|.+....-.+++.+|.+..|+|.++. +.|+|..+++...+...+......+..-.+++|.-.+|+......+.+.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            35677778888899999999999999997 46999999999999999999999999999999876788888888888889


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      |.+.+.+..                    . +...+.  .+++|+|.|+..+....++.+..++.+     +.++..+..
T Consensus       287 G~~G~~~~P--------------------~-~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgma  338 (395)
T COG2807         287 GLVGLLLAP--------------------G-QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGMA  338 (395)
T ss_pred             HHHHHHHhh--------------------h-hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHHh
Confidence            988887654                    1 222222  378899999999999999998776654     577788888


Q ss_pred             HHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHH
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMF  217 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~  217 (294)
                      +....+-...||++.|++.|..| |+..+...+...+
T Consensus       339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i  375 (395)
T COG2807         339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL  375 (395)
T ss_pred             hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence            88888888999999999988765 7766655444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.16  E-value=7.3e-10  Score=115.99  Aligned_cols=183  Identities=9%  Similarity=-0.009  Sum_probs=127.9

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.++.+++..++..+.++.+.+++|.|+++.+|.+....+++.+...++..++.++.|+++|++ ++++.+..+.++..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4555566666666777777788999999999999999999999999999999999999999987 666666555555444


Q ss_pred             HHHHHHHHh-hcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          102 GMICLTISA-ILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       102 ~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +.+.+.+.. .........+.  -.+.. ...+.+.++++.++.|++.+...+...+++.+.+|++      .+|+.++.
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~G~v~g~  374 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLKS--ILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA------HRARVIAA  374 (1140)
T ss_pred             HHHHHHhcccccccccccccc--hhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc------cceeeeHH
Confidence            443333210 00000000000  00000 0014456667778889999999999999999999998      49999999


Q ss_pred             HHHHHHHHHHHHHHhhhheee-ccchhhhhhHhHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTF  214 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~-~~g~~~~f~~~~~  214 (294)
                      +++..++|..+++++.+.+.. ..++...+++.++
T Consensus       375 ~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~  409 (1140)
T PRK06814        375 NNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL  409 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999999999998887763 3455555544443

>PRK10054 putative transporter; Provisional

Probab=99.16  E-value=9.6e-10  Score=102.20  Aligned_cols=172  Identities=10%  Similarity=-0.003  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhh--hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTT--QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .++......++..+.+.....+++.|+..  +.+.+....+.+............++.|++.||+ ++|+.+..+.++..
T Consensus       207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~  285 (395)
T PRK10054        207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV  285 (395)
T ss_pred             eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence            44444455555555555555566777653  3455566667777777677677778889999998 99999998887777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++...+....                     .+.+.+.++.++.++|.+...+....++.+..|++      .+++.++.
T Consensus       286 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~------~~~~~~~~  338 (395)
T PRK10054        286 IGLVGFIFSG---------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG------MKASYFSA  338 (395)
T ss_pred             HHHHHHHHcc---------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc------cceehHhH
Confidence            7776665432                     14455666777888998887888888899988887      57888876


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      .+ ...+|..+||.++|++.+..|....|++.++...++.++.
T Consensus       339 ~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        339 QS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            54 5668999999999999998888877776555444443333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.14  E-value=2e-09  Score=100.26  Aligned_cols=134  Identities=9%  Similarity=-0.045  Sum_probs=98.5

Q ss_pred             hHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 022608           41 FNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (294)
Q Consensus        41 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~  120 (294)
                      ...++|.|+++..+ ++.+.+.+.....++...+....+++.||.++.++.+..+.++..++..++....          
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------  295 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------  295 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence            34567888876555 6677787777766665555555566665543767777777777777766555443          


Q ss_pred             CCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhee
Q 022608          121 EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (294)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~  200 (294)
                                  +.+.+.+..++.++|.+...+...+++.|..|++      .||+.++.++...++|..+||.+.|++.
T Consensus       296 ------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        296 ------------NLQQLFTLICLFYIGSIIAEPARETLSASLADAR------ARGSYMGFSRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             ------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc------cchhhhhHHHHHHHHHHHhcccchHHHH
Confidence                        4444555566778888877888889999999987      5999999999999999999999999987


Q ss_pred             ecc
Q 022608          201 DNI  203 (294)
Q Consensus       201 ~~~  203 (294)
                      +..
T Consensus       358 ~~~  360 (400)
T PRK11646        358 DLG  360 (400)
T ss_pred             HHH
Confidence            764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.14  E-value=2e-09  Score=102.43  Aligned_cols=165  Identities=14%  Similarity=0.071  Sum_probs=117.1

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      |.+..++...++.....+......+.|.+...+ +....+.+.....+...++.++.++++||+ |+|++++++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            556666666677767666666655555554433 455566666666678888889999999998 999999988877776


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh-hhhhhhhhHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP-KQATKTWKYFNW  180 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~rg~~~~~  180 (294)
                      +.+........+                 ..+.+.+.+..++.+++.+...+...++++|..+.++- .++++.|..++.
T Consensus       309 ~~~~~~~~~~~~-----------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~  371 (473)
T PRK10429        309 SCGVLLLMGLAA-----------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSV  371 (473)
T ss_pred             HHHHHHHHhccC-----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHH
Confidence            665554321011                 11455566666778899999899999999999875532 234457778899


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccch
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGW  205 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~  205 (294)
                      ..+...+|..+++.+.|++.+..|+
T Consensus       372 ~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        372 QTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999888877655444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.14  E-value=4.5e-09  Score=97.19  Aligned_cols=177  Identities=11%  Similarity=-0.055  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHH--HHHHHHHhhhHHHH-HHHHHhhcchhHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTL--TNFGGTGSLTPLIG-AFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      ...+....+.+.+.+....+.+|.|++ +.|.|..+.+...  ......-.+.+|+. ++++||+ ||||..++.+.+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            445566778888888878888888886 4699999999973  45566666666666 6678887 99998766653322


Q ss_pred             H-HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          101 I-GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       101 i-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      . ....+....  +.                ......+.....+.++......+....+..|..+++      +++...+
T Consensus        81 ~~~~~~~~~~~--~~----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~------~~~~~~~  136 (390)
T TIGR02718        81 SACLASLALVG--PD----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGR------TLAKGNA  136 (390)
T ss_pred             HHHHHHHHcCC--cc----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhhHHHH
Confidence            2 222222111  10                001222233334445566666666677777776665      4677777


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                      ...++..+|..+++...+++.+.+||+..|++.+++.++..+..+..
T Consensus       137 ~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       137 VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            77777788999999888888889999999998887766655544433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11462 putative transporter; Provisional

Probab=99.12  E-value=4.2e-09  Score=99.93  Aligned_cols=149  Identities=11%  Similarity=0.166  Sum_probs=113.0

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh---cchhH-HHHHHHHHHHHHHH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFW-TITIASIIYQIGMI  104 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~-~l~~~~~~~~i~~i  104 (294)
                      +..+..++.+..+..+++.|+++..|+++..++.+..+.-+.-.+.-|+.|.++||.   +|||| -++++.+...++.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            455566777777778899999999999999999999999999999999999999973   48765 55566677777766


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  184 (294)
                      ++...   |...             .......+.+..++..++......+..++.+|+.++.+     +|++..++....
T Consensus        96 llf~~---p~~s-------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~~  154 (460)
T PRK11462         96 LAYST---PDLS-------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFVL  154 (460)
T ss_pred             HHHhC---CCCC-------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHHH
Confidence            55532   2110             11223444555566788888888889999999988655     699999999988


Q ss_pred             HHHHHHHHHHhhhh
Q 022608          185 MGAAILVAVTVLVY  198 (294)
Q Consensus       185 ~~ig~~~~~~~~~~  198 (294)
                      .++|+.+++.+...
T Consensus       155 ~~iG~~~~~~~~~p  168 (460)
T PRK11462        155 ATAGGMLSTVLMMP  168 (460)
T ss_pred             HHHHHHHHHHHHHH
Confidence            89888887766543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.12  E-value=5.8e-09  Score=96.89  Aligned_cols=156  Identities=10%  Similarity=0.020  Sum_probs=113.6

Q ss_pred             HHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022608           35 KLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQ  114 (294)
Q Consensus        35 ~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~  114 (294)
                      ..........++.|+++.+|.+..+.+.+.....++..+++++.+++.||. ++++++..+..+ .+..+.+....    
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~~----  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQH----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHHh----
Confidence            333444555677888888999999999999999999999999999999997 988888777533 23322232222    


Q ss_pred             CCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 022608          115 LRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT  194 (294)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~  194 (294)
                                        +.+...+..++.|++.+...++..+.+.+..|++.     .+|+..+..++..++|..++..
T Consensus       292 ------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~  348 (393)
T PRK11195        292 ------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLG  348 (393)
T ss_pred             ------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHH
Confidence                              44555566677889888888888888877655431     2799999999999999999998


Q ss_pred             hhhheeeccchhhhhhHhHHHHHHHH
Q 022608          195 VLVYIQDNIGWGWGLGIPTFAMFLSI  220 (294)
Q Consensus       195 ~~~~l~~~~g~~~~f~~~~~~~~~~~  220 (294)
                      +.+.+ +.+|-+..+.+.....++.+
T Consensus       349 ~~~~~-~~~~~~~~~~~~~~~~~~~~  373 (393)
T PRK11195        349 LYSLL-VKLGVPVVAVIVGFGLLVAL  373 (393)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence            87755 55676666665555444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.12  E-value=4.4e-09  Score=96.97  Aligned_cols=166  Identities=10%  Similarity=-0.059  Sum_probs=109.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchh---HHHHH-HHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRF---WTITI-ASI   97 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr---~~l~~-~~~   97 (294)
                      +..+.+....++....+|++.+|+|.|+++ .|++.. .+....+..+...++   .++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            456777788888999999999999999965 678764 555555555444444   57788876 543   33232 232


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      +..+.........                      +.....+...+.+++.....+...++.+|.+|++      .|+++
T Consensus       266 ~~a~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~rgt~  317 (368)
T TIGR00903       266 LIAAFFLALAFEL----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE------LHGKA  317 (368)
T ss_pred             HHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh------hcCcc
Confidence            2222222222221                      2223334445556667777777889999999998      59999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHH
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      .++.+...++|+.++|.+.+.+..  |.+..|.+.++..+++.+..
T Consensus       318 ~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       318 AGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988876653  55566666655555544443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.12  E-value=2.1e-09  Score=98.01  Aligned_cols=144  Identities=13%  Similarity=0.062  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHH-HHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFG-GTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .+.+.+..++..+.++...++++.|+++ +|++..+.+.+..... +...++.+++|+++||+ |||+.+..+.++..++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            5555666667788888888999999987 8999999988887665 56778899999999998 9999988888777666


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      ..+.....+......           .+..+.+.+..+.++.+++.+...+...+++.|.+|++      .||+.++.++
T Consensus       289 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~  351 (356)
T TIGR00901       289 NAGFVWLASNGHHDG-----------ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPK------FGATQMALLS  351 (356)
T ss_pred             HHHHHHHHhcCcccc-----------cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC------ccHHHHHHHH
Confidence            554443210000000           00013456666777889999999999999999999999      5999999887


Q ss_pred             HHHH
Q 022608          183 FVMG  186 (294)
Q Consensus       183 ~~~~  186 (294)
                      ...+
T Consensus       352 ~~~~  355 (356)
T TIGR00901       352 SLSA  355 (356)
T ss_pred             HHHh
Confidence            6544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.11  E-value=2.7e-10  Score=106.91  Aligned_cols=179  Identities=13%  Similarity=0.126  Sum_probs=127.6

Q ss_pred             HHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH----hhcchhH-HHHHHHHHHHHHHHH
Q 022608           31 EVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVAD----AYAGRFW-TITIASIIYQIGMIC  105 (294)
Q Consensus        31 ~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Grr~-~l~~~~~~~~i~~i~  105 (294)
                      .+..++.+.....+++.|+++.+|+++...+.+..+..+...+..|+.|.++|    |+ |||| .++++.++..++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            35556666666778899999999999999999999999999999999999999    66 8665 455677777777776


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 022608          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (294)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~  185 (294)
                      +....  |.            ..+.......+.+..++..++......+..++.+|..++.+     +|.+..++-....
T Consensus        89 lf~~~--p~------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~  149 (428)
T PF13347_consen   89 LFSPP--PA------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFS  149 (428)
T ss_pred             hhccc--cc------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHH
Confidence            66431  10            00011133344566667789999999999999999988765     6888998888888


Q ss_pred             HHHHHHHHHhhhheeecc-------chhhhhhHhHHHHHHHHHHHHHhccc
Q 022608          186 GAAILVAVTVLVYIQDNI-------GWGWGLGIPTFAMFLSIIAFLIGYPL  229 (294)
Q Consensus       186 ~ig~~~~~~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~~~~~~  229 (294)
                      .+|+.+...+.+.+.+..       +|++...+.+++..+..++.....++
T Consensus       150 ~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  150 MIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            888876666655444222       57777666666555554444443333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.11  E-value=4.8e-09  Score=94.13  Aligned_cols=161  Identities=17%  Similarity=0.230  Sum_probs=134.8

Q ss_pred             HHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 022608           34 EKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILP  113 (294)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~  113 (294)
                      -+-..-++ ..+.+-+++++|++.+.++.+++...++..+.+++..+++.|+ |..+.+..++++..+|.++-...    
T Consensus        24 LR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~----   97 (395)
T COG2807          24 LRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG----   97 (395)
T ss_pred             cchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc----
Confidence            34444333 4455677889999999999999999999999999999999998 99999999999988888776543    


Q ss_pred             CCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 022608          114 QLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV  193 (294)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~  193 (294)
                                         ....++.+-.+.|.|.+..+...|..+-+.||++       .+..++.|.++.++|+.+++
T Consensus        98 -------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa  151 (395)
T COG2807          98 -------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAA  151 (395)
T ss_pred             -------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHh
Confidence                               3566788888999999999999999999999996       89999999999999999999


Q ss_pred             Hhhhheeecc-chhhhhhHhHHHHHHHHHHHHHh
Q 022608          194 TVLVYIQDNI-GWGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       194 ~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                      .+...+.++. ||+....+=+...+++++..++-
T Consensus       152 ~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         152 ALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             hhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            9888877665 79987776666666666666554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.10  E-value=4.4e-09  Score=94.51  Aligned_cols=189  Identities=14%  Similarity=0.099  Sum_probs=129.1

Q ss_pred             hhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022608           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (294)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~  119 (294)
                      ...+.+.+-++...|.+..+..++....+.+..+++..+|.++|++ |||+...+..+..++..++-..+.         
T Consensus        95 m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp---------  164 (528)
T KOG0253|consen   95 MLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP---------  164 (528)
T ss_pred             HHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC---------
Confidence            3445555666778899999999999999999999999999999998 999988887766555444433332         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                                   ++..+++.|.+.|+|.|+ .|...+.-.|-.|...      |+...-.. ....+|......+.-.+
T Consensus       165 -------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~v  223 (528)
T KOG0253|consen  165 -------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGV  223 (528)
T ss_pred             -------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHH
Confidence                         778889999999999999 8888888899888774      66555544 55667888777776666


Q ss_pred             eeccchhhhhhHhHHHHHHHHHHHH--HhccceeccCCCCChhHHHHHHHHHHHHhCccccCCCC
Q 022608          200 QDNIGWGWGLGIPTFAMFLSIIAFL--IGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMVTDP  262 (294)
Q Consensus       200 ~~~~g~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (294)
                      ..++||||-+....+-..+..++..  .+.+++.-.+  +++ .+..+.+....|-++.+.|...
T Consensus       224 m~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~--G~~-~kAletL~kiArmNg~qlplgv  285 (528)
T KOG0253|consen  224 MSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAK--GDD-YKALETLHKIARMNGKQLPLGV  285 (528)
T ss_pred             HHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhc--CCh-HHHHHHHHHHHHhcCCCCCcce
Confidence            6788999877666643333222222  2223332222  222 2233444555555666655543

>PRK09848 glucuronide transporter; Provisional

Probab=99.09  E-value=4.9e-09  Score=98.90  Aligned_cols=150  Identities=11%  Similarity=0.053  Sum_probs=98.6

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh---cchhHHH-HHHHHHHHHHHH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTI-TIASIIYQIGMI  104 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l-~~~~~~~~i~~i  104 (294)
                      ...+..++.+..+..+++.|+++.+|++..+++.+.....+...+..++.|+++||.   +||||.. +++.+...+..+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~   94 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV   94 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence            455566777766777888999999999999999999999999999999999999995   3666644 555554444443


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  184 (294)
                      ++....  ....             .....+..++..++.+++.+...++..++..++.++.+     +|....++-.++
T Consensus        95 ~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r~~~  154 (448)
T PRK09848         95 LVFWVP--TDWS-------------HSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAARGIA  154 (448)
T ss_pred             HHHhCc--CCCC-------------cchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHHHHH
Confidence            332111  0000             01123334445566788888888887888787766643     466665554433


Q ss_pred             -----HHHHHHHHHHhhhh
Q 022608          185 -----MGAAILVAVTVLVY  198 (294)
Q Consensus       185 -----~~ig~~~~~~~~~~  198 (294)
                           ..++..++|.+.+.
T Consensus       155 ~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        155 ASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence                 33455556665543

>TIGR00898 2A0119 cation transport protein

Probab=99.08  E-value=2.5e-09  Score=102.26  Aligned_cols=141  Identities=12%  Similarity=0.029  Sum_probs=97.2

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 022608           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (294)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (294)
                      ..++.+...   ......+...++.++++++.||+ |||+.+.++.++..++.+++....   .                
T Consensus       351 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~----------------  407 (505)
T TIGR00898       351 GNLGGNIYL---DLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V----------------  407 (505)
T ss_pred             cccCCChHH---HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C----------------
Confidence            344555332   23344556667888999999998 999999998887777766655433   0                


Q ss_pred             chhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhh
Q 022608          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLG  210 (294)
Q Consensus       131 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~  210 (294)
                      . ..+...+..++.+++.+...+....+.+|.+|++      .|+++.++.+....+|+.++|.+.+ + ...++...+.
T Consensus       408 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~  478 (505)
T TIGR00898       408 D-LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV------VRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLV  478 (505)
T ss_pred             C-chHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH------HHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHH
Confidence            0 1233333444556666667778889999999998      5999999999999999999999887 3 3345556666


Q ss_pred             HhHHHHHHHHHHH
Q 022608          211 IPTFAMFLSIIAF  223 (294)
Q Consensus       211 ~~~~~~~~~~~~~  223 (294)
                      +.+++.+++.+..
T Consensus       479 ~~~~~~~~~~~~~  491 (505)
T TIGR00898       479 LFGGLALLAGILT  491 (505)
T ss_pred             HHHHHHHHHHHHH
Confidence            6555554444433

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.08  E-value=5.6e-10  Score=102.68  Aligned_cols=118  Identities=18%  Similarity=0.143  Sum_probs=95.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchh
Q 022608           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (294)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (294)
                      ++++...+.+..+.+++..+|+++.||++|++ |||+++...+++++++.+++.++.               |-++....
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~---------------~~~~~~~~  143 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSV---------------GTTSPLGV  143 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCC---------------CCCCCcch
Confidence            37788899999999999999999999999998 999999999999999998666543               11112246


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 022608          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV  193 (294)
Q Consensus       134 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~  193 (294)
                      .+.+...|+++|+|.|+=+|...+..+|..-.+      +||...+.......+|.+.|.
T Consensus       144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~------~RGa~iaavFa~Qg~GilaG~  197 (538)
T KOG0252|consen  144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANKK------TRGAFIAAVFAMQGFGILAGG  197 (538)
T ss_pred             hhHHHHHHHHhhccccCCCcchHHHhhhhhhhc------cccceeEEEEEecchhHhhcc
Confidence            678889999999999999999999999987776      688887765554444444443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.08  E-value=2.1e-09  Score=97.00  Aligned_cols=141  Identities=17%  Similarity=0.238  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcCCC-HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMP-LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~  105 (294)
                      ++...++..+.++....+++.|+++.+|++ ..+.+.+.....+...++.++.|+++||+ |+++.+........++.+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~  289 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG  289 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence            445555555677778888999989999999 89999999999999999999999999998 9888887777666666655


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 022608          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (294)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~  185 (294)
                      +....                   ...+....++..++.|++.+...+....++.|.+|++      ++|+..+.++...
T Consensus       290 ~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~  344 (352)
T PF07690_consen  290 LLLLP-------------------FSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPE------YRGTAFGLFNSIG  344 (352)
T ss_dssp             HCCSH-------------------HHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC------HHHHHHHHHHHHH
T ss_pred             HHHHH-------------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHH
Confidence            55433                   1113455555677789999999999999999999987      6999999999999


Q ss_pred             HHHHHHHH
Q 022608          186 GAAILVAV  193 (294)
Q Consensus       186 ~ig~~~~~  193 (294)
                      ++|+.+||
T Consensus       345 ~~~~~igP  352 (352)
T PF07690_consen  345 SLGGIIGP  352 (352)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHCC
Confidence            99999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=99.08  E-value=2.8e-08  Score=92.09  Aligned_cols=150  Identities=13%  Similarity=0.051  Sum_probs=105.3

Q ss_pred             HHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 022608           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTIS  109 (294)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~  109 (294)
                      ...+....++....++|.|++ +.|++..+.+........+..++.++++++.||+ |+|+.+....++..++.+.+...
T Consensus       211 ~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~  288 (401)
T PRK11043        211 IFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLA  288 (401)
T ss_pred             HHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555566677788875 5799999999887777788888999999999998 99987766655555544433322


Q ss_pred             hhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHH
Q 022608          110 AILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAI  189 (294)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~  189 (294)
                      ...+                 ....+.+.+...+.+++.+...+.......|..|+       .+|+..++++.....++
T Consensus       289 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~  344 (401)
T PRK11043        289 SLLS-----------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLC  344 (401)
T ss_pred             HHhc-----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHH
Confidence            2000                 01334444555677888888888887777787765       38999999988878888


Q ss_pred             HHHHHhhhheeeccch
Q 022608          190 LVAVTVLVYIQDNIGW  205 (294)
Q Consensus       190 ~~~~~~~~~l~~~~g~  205 (294)
                      ..++.+.+.+.+....
T Consensus       345 ~~~~~~~g~l~~~~~~  360 (401)
T PRK11043        345 FLASLLVSALISTPLL  360 (401)
T ss_pred             HHHHHHHHHccCCChh
Confidence            8888888877664333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.07  E-value=3e-09  Score=101.75  Aligned_cols=176  Identities=16%  Similarity=0.152  Sum_probs=142.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcch--hHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR--FWTITIASIIY   99 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--r~~l~~~~~~~   99 (294)
                      +.++.+.+...+..++++.-..+++.|.+ ..+++..+++.+.+...+...++.++.|+++|+. ..  +.+..++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            45555666667777777777788888887 7899999999999999999999999999999997 63  34444444444


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.+.+.+..                      +++.++...+++|+..|...+..+..+.|..+.+      +...+++
T Consensus       376 gl~~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~G  427 (509)
T KOG2504|consen  376 GLARLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYG  427 (509)
T ss_pred             HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHH
Confidence            45544444444                      6788888888999999999999888999999988      6999999


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHHHhc
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      +......++..+||.+++++.+..| |...|+...+..+++.+..++..
T Consensus       428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999998887 88889988888877765555543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.05  E-value=3.8e-08  Score=90.23  Aligned_cols=147  Identities=13%  Similarity=-0.059  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 022608           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (294)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i  104 (294)
                      +......++.....+....+.+.++.+.+|++..+.+.+.....++..++.+++|++.||+ |||+.+..+..+..+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~  275 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence            3333444444455555566667788888999999999999999999999999999999998 999999988776544433


Q ss_pred             HHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHH
Q 022608          105 CLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFV  184 (294)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~  184 (294)
                      .+......                  +...+.+.++..+.+.+.+...+....++.|..|.       .+++..+..+..
T Consensus       276 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~  330 (377)
T PRK11102        276 WLVVSALL------------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH-------MAGTASSLAGTL  330 (377)
T ss_pred             HHHHHHHH------------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc-------cchHHHHHHHHH
Confidence            33222100                  01233333444444444455555556667777764       377777776543


Q ss_pred             -HHHHHHHHHHhhh
Q 022608          185 -MGAAILVAVTVLV  197 (294)
Q Consensus       185 -~~ig~~~~~~~~~  197 (294)
                       ..+|+.+++.+.+
T Consensus       331 ~~~~g~~~g~~~~~  344 (377)
T PRK11102        331 RFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHh
Confidence             3466666666543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.01  E-value=3.3e-08  Score=89.08  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=102.4

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 022608           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (294)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (294)
                      +++|++..+.+.+.....+...+..++.|.++||+ |||+..+..++++.++.+.- ...                    
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k-~~~--------------------  119 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTK-HSS--------------------  119 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hcc--------------------
Confidence            57899999999999999999999999999999998 99999999998888877532 222                    


Q ss_pred             chhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHhhhheeeccch--hh
Q 022608          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY-FVMGAAILVAVTVLVYIQDNIGW--GW  207 (294)
Q Consensus       131 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~-~~~~ig~~~~~~~~~~l~~~~g~--~~  207 (294)
                        ++..++++|++-|++.....+..-+.......+++-++ ...+..++... +...+-+..+.+++.++.+..+.  ..
T Consensus       120 --~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va  196 (354)
T PF05631_consen  120 --NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVA  196 (354)
T ss_pred             --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence              68889999999999998888776655533333322110 12333333222 12222223333344445554444  56


Q ss_pred             hhhHhHHHHHHHHHHHHHhcc
Q 022608          208 GLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       208 ~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      +|....++.+++.+++...++
T Consensus       197 PF~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  197 PFDAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             hHHHHHHHHHHHHHHHHhccc
Confidence            787777777766665554443

>PRK09669 putative symporter YagG; Provisional

Probab=98.99  E-value=1.5e-08  Score=95.56  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .++.++...++............+.|.+..++ +....+.+.....+...++.+++++++||+ |||+.+..+.++..++
T Consensus       230 ~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        230 QWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVIL  307 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHH
Confidence            34444444444434433333333334333333 233334445555666778888999999998 9999999887665544


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChh-hhhhhhhHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNWY  181 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~rg~~~~~~  181 (294)
                      .+...+..                    ..+.+.+++..++.|++.+...+...++++|..+.++.+ ++++.|..++.+
T Consensus       308 ~~~~~~~~--------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~  367 (444)
T PRK09669        308 SALIFFIP--------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTN  367 (444)
T ss_pred             HHHHHHhC--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHH
Confidence            33333221                    125566677778889999999999999999998855432 334567888899


Q ss_pred             HHHHHHHHHHHHHhhhheeeccch
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGW  205 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~  205 (294)
                      ++...+|..+|+.+.+.+.+..|+
T Consensus       368 ~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        368 LFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999998887665555

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.99  E-value=2e-08  Score=95.02  Aligned_cols=177  Identities=14%  Similarity=0.050  Sum_probs=120.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcch--------hHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR--------FWTIT   93 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--------r~~l~   93 (294)
                      +.+|.+++..++.+.+++.+..++|.|+.+.+|+|..+.|+..++..+...+..+++|.++|+. -+        ||.+-
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn  336 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFN  336 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHH
Confidence            5778888999999999999999999999999999999999999999999999999999999998 33        12111


Q ss_pred             -HHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhh
Q 022608           94 -IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (294)
Q Consensus        94 -~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  172 (294)
                       ++.....++++.+.+..   .      .+       .......+.++..+.|+..++.    ..-..|..|.+      
T Consensus       337 ~i~~~~~ai~l~~l~~~~---~------~~-------~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~apq~------  390 (466)
T KOG2532|consen  337 TIAFGGPAVFLLVLAFTS---D------EH-------RLLAVILLTIAIGLSGFNISGF----YKNHQDIAPQH------  390 (466)
T ss_pred             hHHHHHHHHHHHeeeecC---C------Cc-------chHHHHHHHHHHHHcccchhhh----HhhhhhccchH------
Confidence             12222222222222221   0      00       0001111222222222222222    22223335554      


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhheeec---cchhhhhhHhHHHHHHHHHHHHHh
Q 022608          173 KTWKYFNWYYFVMGAAILVAVTVLVYIQDN---IGWGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       173 ~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                       .+..++..+...++.+.++|.+.+.+...   ..|++.|.+.+++.+++-+++.+.
T Consensus       391 -a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 -AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence             88999999999999999999999988742   369999999998888777666554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.97  E-value=1.2e-07  Score=87.68  Aligned_cols=71  Identities=13%  Similarity=0.141  Sum_probs=59.3

Q ss_pred             HhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 022608           39 VGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (294)
Q Consensus        39 ~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~  110 (294)
                      .....+.+.|+++++|++..+.+.+.....++..++.++.+++.||+ |||+.+.++..+..++.+.+....
T Consensus       220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  290 (392)
T PRK10473        220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP  290 (392)
T ss_pred             HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445567788888999999999998889999999999999999998 999999999888877777666543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.96  E-value=3.7e-08  Score=92.23  Aligned_cols=155  Identities=15%  Similarity=0.128  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh---cchh-HHHHHHHHHHH
Q 022608           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRF-WTITIASIIYQ  100 (294)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr-~~l~~~~~~~~  100 (294)
                      +.--...+..++.+..+..++..|+++.+|+++..+|.+..+.-+.-++.-|+.|.+.||.   +||+ +-++.+.+...
T Consensus        15 i~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~   94 (467)
T COG2211          15 IGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFA   94 (467)
T ss_pred             HhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHH
Confidence            3334556667777777888999999999999999999999999999999999999999975   4765 55666667777


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +..+++..+.+. +               ...+....++..++.+++......+..++.+|+.++.+     +|.+..++
T Consensus        95 i~~~l~F~~p~~-~---------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~s~  153 (467)
T COG2211          95 IVAVLLFITPDF-S---------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLTSW  153 (467)
T ss_pred             HHHHHHHcCCCc-c---------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHHHH
Confidence            776666654411 1               12345555666788899999999999999999988765     79999999


Q ss_pred             HHHHHHHHHHHHHHhhhhee
Q 022608          181 YYFVMGAAILVAVTVLVYIQ  200 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~  200 (294)
                      -....++|+++...+.+.+.
T Consensus       154 R~~~~~~g~~l~~~~~~plv  173 (467)
T COG2211         154 RMVFASLGGLLVAVLFPPLV  173 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999888776665544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.93  E-value=1.2e-08  Score=92.90  Aligned_cols=139  Identities=13%  Similarity=0.079  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      .+.+....++.....+.+..+++.|+++.+|++..+++.+.....+...++.+++|+++||+ |||+.+..+..+...+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            34444445555556667778899999999999999999999999999999999999999998 99988887776665555


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      .++.... .                 +..+.+...+...+.+++.|...+...++++|.+|.       .+|+..+.++.
T Consensus       306 ~~~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~g~~~g~~~~  360 (366)
T TIGR00886       306 FLVVLGL-V-----------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-------ATGAVSGLVGA  360 (366)
T ss_pred             HHHHhcC-C-----------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchh-------hcccHHHHHHH
Confidence            5444322 0                 000334444445555666666667777888888874       38999998877


Q ss_pred             HHHHH
Q 022608          184 VMGAA  188 (294)
Q Consensus       184 ~~~ig  188 (294)
                      ..++|
T Consensus       361 ~~~~g  365 (366)
T TIGR00886       361 IGNLG  365 (366)
T ss_pred             hccCC
Confidence            76655

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.92  E-value=2.4e-07  Score=85.73  Aligned_cols=139  Identities=9%  Similarity=-0.021  Sum_probs=96.4

Q ss_pred             hHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 022608           41 FNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (294)
Q Consensus        41 ~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~  120 (294)
                      .....+.|+++.+|.+..+.+........+..++.++.+++.||+ |++...  +.....++.+........        
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~--------  294 (394)
T PRK11652        226 FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWF--------  294 (394)
T ss_pred             HHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHh--------
Confidence            344566788888999999999888787778888888888999987 743322  222222222222211100        


Q ss_pred             CCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhee
Q 022608          121 EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (294)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~  200 (294)
                               ...+.+.+.++.++.++|.+...+....+..|.+|++       +|...+.++...++|+.+++.+.+.+.
T Consensus       295 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        295 ---------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             ---------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                     0113455666778888998988899999999988753       788888888888999999999988876


Q ss_pred             eccchh
Q 022608          201 DNIGWG  206 (294)
Q Consensus       201 ~~~g~~  206 (294)
                      ....+.
T Consensus       359 ~~~~~~  364 (394)
T PRK11652        359 QTGQFS  364 (394)
T ss_pred             CCchHH
Confidence            553333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.5e-07  Score=88.92  Aligned_cols=188  Identities=12%  Similarity=0.062  Sum_probs=116.9

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .+.+...+.+.+++.+.-.....+....+-++-|++..++.+.......+..+..+++.++.||+ |||+.++++..++.
T Consensus       268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA  346 (485)
T ss_pred             hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence            34455555666666554333333333333346799999999999999999999999999999998 99999999999888


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccC-cchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGG-IRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      +..+++.....+....             ..+-....+++.++..++.+. ..|...-+.+|.+|+..      |..+++
T Consensus       347 ~~~~~~~~~~~l~~~~-------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa~s  407 (485)
T KOG0569|consen  347 VALLLMSIALFLSNSF-------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAAQS  407 (485)
T ss_pred             HHHHHHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHHHH
Confidence            8777776554221100             000111223333333333322 24566777899999984      888888


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhccc
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  229 (294)
                      +-.....+..++-......+.+.+|- ..|....+...+..+..+...|+
T Consensus       408 ~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPE  456 (485)
T KOG0569|consen  408 VATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPE  456 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence            77766666666666666666665554 33443434343443333333333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.89  E-value=7.3e-08  Score=90.15  Aligned_cols=158  Identities=11%  Similarity=-0.054  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHhhhh-cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 022608           28 FSNEVCEKLAVVGFNTNMISYLTTQ-LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (294)
Q Consensus        28 ~~~~~~~~~~~~~~~~~l~~yl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~  106 (294)
                      ....++......+..++++.|+++. .+.+...++.....+..+..++.+++++++||+ ++|+++.++.++..+..++.
T Consensus       238 ~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ll~  316 (410)
T TIGR00885       238 VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALCLGS  316 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHH
Confidence            3344444344445567888998653 255556666667777788899999999999998 99999888877777766666


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  186 (294)
                      ....                      ... .....++.|+..+.+.|.+.....+..+++       .....+...++ .
T Consensus       317 ~~~~----------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~-------~~~~s~~l~~~-~  365 (410)
T TIGR00885       317 IFAG----------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQD-------TKYGAAGLVMA-I  365 (410)
T ss_pred             HHcC----------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hhhhHHHHHHH-H
Confidence            5533                      212 234455667777788899999999998876       22223333333 3


Q ss_pred             HHHHHHHHhhhheeecc------chhhhhhHhHHHHH
Q 022608          187 AAILVAVTVLVYIQDNI------GWGWGLGIPTFAMF  217 (294)
Q Consensus       187 ig~~~~~~~~~~l~~~~------g~~~~f~~~~~~~~  217 (294)
                      +|+++.|.+.|++.|..      +.+..|.++.++.+
T Consensus       366 ~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       366 IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             hccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            99999999999999854      46677777655443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.88  E-value=1.3e-07  Score=88.69  Aligned_cols=161  Identities=19%  Similarity=0.205  Sum_probs=125.6

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      .+..+++..++...++....+.++.|.+..+|.+................++.++..++.+|+ |||+++.++.++.+++
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~  315 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG  315 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            333444455555555555556677888878888888888888888888888899999999998 9999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChh-hhhhhhhHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK-QATKTWKYFNWY  181 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~rg~~~~~~  181 (294)
                      .+++.+..                    ..+.+.+++..++.++|.+...+...++++|..+-.|-+ ++++-|..++.+
T Consensus       316 ~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~  375 (467)
T COG2211         316 YLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGM  375 (467)
T ss_pred             HHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHH
Confidence            98888765                    126777888889999999999999999999988766532 445678888888


Q ss_pred             HHHHHHHHHHHHHhhhheeeccc
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIG  204 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g  204 (294)
                      ....-+|.+++..+.+++....|
T Consensus       376 tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         376 TFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888888777666544433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.87  E-value=3.7e-08  Score=92.52  Aligned_cols=156  Identities=17%  Similarity=0.154  Sum_probs=120.3

Q ss_pred             cccCCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhh-hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcch-hHHH
Q 022608           15 KRQKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWTI   92 (294)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~l   92 (294)
                      +..+.+||.++...+.+++..+-++.+....-+|+++ +.+-+.+-.|++++...++..++.+..|+.+.|. |. |+-+
T Consensus        27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl  105 (488)
T KOG2325|consen   27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL  105 (488)
T ss_pred             cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence            4457899999999999999988888777777788874 4677888899999999999999999999999998 75 7778


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhh
Q 022608           93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (294)
Q Consensus        93 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  172 (294)
                      +.|.++.++|.++.......|+                 ...+.++++|++.|+|.|... ..=.|+++....++     
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~-----------------~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s~~~d-----  162 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPN-----------------GVKYLMLVARILTGVGVGNFA-VLRAYIADASTVED-----  162 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-----------------chHHHHHHHHHHcCcCcccHH-HHHHHHHhccCccc-----
Confidence            8888899999888744432332                 267888999999999987644 55888888666654     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHh
Q 022608          173 KTWKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       173 ~rg~~~~~~~~~~~ig~~~~~~~  195 (294)
                       |.++++....+..+|..+||.+
T Consensus       163 -R~rA~a~~~~~~vlg~ilGp~~  184 (488)
T KOG2325|consen  163 -RPRAFAATSGGFVLGIILGPTI  184 (488)
T ss_pred             -hHHHHHHhhhHHHHHHHHhHHH
Confidence             6666665555445555555544

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.87  E-value=4.8e-08  Score=87.91  Aligned_cols=147  Identities=11%  Similarity=0.073  Sum_probs=104.0

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhc--C-----------------CCHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL--H-----------------MPLTKAANTLTNFGGTGSLTPLIGAFV   81 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~G~l   81 (294)
                      .|..+.+..+.|...+.+|+.+-......+...  +                 .+...-..=.....+.-..|.++.+++
T Consensus       325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i  404 (528)
T KOG0253|consen  325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI  404 (528)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence            356667778889999999988655544443211  1                 111111222345566677889999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhc
Q 022608           82 ADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGAD  161 (294)
Q Consensus        82 aDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~  161 (294)
                      .||+ |||++|..+.+++.+..+++....                 +.+ .....++.+|+++.    +...+...|..|
T Consensus       405 verl-GRKkTMal~l~~f~iflfll~~c~-----------------~rn-~~tvllf~arafis----g~fqvaYvYtPE  461 (528)
T KOG0253|consen  405 VERL-GRKKTMALSLILFGIFLFLLTTCK-----------------TRN-AYTVLLFTARAFIS----GAFQVAYVYTPE  461 (528)
T ss_pred             HHHh-cchhHHHHHHHHHHHHHHHHHHhc-----------------Ccc-hhHHHHHHHHHHHh----chheEEEEecCc
Confidence            9997 999999999998888877776543                 111 12334556666554    334466889999


Q ss_pred             ccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 022608          162 QFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVL  196 (294)
Q Consensus       162 ~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~  196 (294)
                      .+|+.      .|++..|.-.....+|+++.|+++
T Consensus       462 VyPTa------vRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  462 VYPTA------VRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             ccchh------hhhcchhhhhhHHhhhhhhhhHHH
Confidence            99998      599999999999999999999988

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.83  E-value=8.9e-07  Score=82.56  Aligned_cols=117  Identities=15%  Similarity=0.095  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 022608           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (294)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~  105 (294)
                      ++....+++.+.+-...++++.|+++ .|+|..+.|.+.++..+...+++++.|+++||+..+++.+.+..++..+....
T Consensus         6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~   84 (400)
T PF03825_consen    6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL   84 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            34444555555555567889999975 68999999999999999999999999999999844667776666555554444


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCC
Q 022608          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDE  165 (294)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  165 (294)
                      .....                      +.+.+.+..++..+......|...++..+...+
T Consensus        85 ~~~~~----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~  122 (400)
T PF03825_consen   85 LAFSS----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD  122 (400)
T ss_pred             HHHhc----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence            33333                      455555556666777777777777777666554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.82  E-value=2.2e-07  Score=86.10  Aligned_cols=177  Identities=13%  Similarity=0.105  Sum_probs=134.7

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcC---CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH---MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~   96 (294)
                      +.|++|.+.+........++..-..++.|.+..++   .+....|.+.++..+.-.+.-.+..++-+|+ |.|+.++++.
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag  296 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAG  296 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHH
Confidence            34566666655555555555555567888875443   3445667777777888888888999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus        97 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      .++.+=.++++++.                      +++.+.+...+.++-.+........|+++.+|++      ..++
T Consensus       297 ~i~~iRi~~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r------lsAt  348 (412)
T PF01306_consen  297 VIMAIRIIGSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR------LSAT  348 (412)
T ss_dssp             HHHHHHHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG------GHHH
T ss_pred             HHHHHHHHHHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------HHHH
Confidence            88888877777766                      7888899999999999999999999999999987      3566


Q ss_pred             HHHH-HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          177 YFNW-YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       177 ~~~~-~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ...+ ++.+.++|..+.+.++|++.++.|++.+|++.+.+.++..++..+
T Consensus       349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence            6665 467889999999999999999999999998877766555444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.81  E-value=3.2e-07  Score=79.68  Aligned_cols=149  Identities=11%  Similarity=0.117  Sum_probs=107.3

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      |-.+...+.++.+.. +.|.+ +...+.+++.+|+|..+.+.+...-.++..+ .++.|.+.|++ |.+.++++|.+...
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHH
Confidence            444444455555443 33333 4456778899999999999999999999886 58889999998 99999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +|..++++...-. .              .....|.+.+..++.+.+.+...+.......+.||.+       ||++.++
T Consensus        78 ~GY~~~~l~~~~~-i--------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgi  135 (250)
T PF06813_consen   78 VGYGLLWLAVSGR-I--------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGI  135 (250)
T ss_pred             HHHHHHHHHHhCc-c--------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehh
Confidence            9998888764110 0              1125566666666666766666666666667889975       8999988


Q ss_pred             HHHHHHHHHHHHHHh
Q 022608          181 YYFVMGAAILVAVTV  195 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~  195 (294)
                      .-....+++.+-..+
T Consensus       136 lk~~~GLSaai~t~i  150 (250)
T PF06813_consen  136 LKGFFGLSAAIFTQI  150 (250)
T ss_pred             hhHHHHhHHHHHHHH
Confidence            776666766654444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.78  E-value=7.2e-07  Score=83.15  Aligned_cols=159  Identities=12%  Similarity=0.041  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGM  103 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~  103 (294)
                      ++..++..++...+.-....+...|+++.-|.+....+.+.++..+.-.+.-.+.+++-.|+ |.+++++++.+.+++=.
T Consensus       209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            33344445555555555667788899765447777777777777777777778889999997 99999999998877766


Q ss_pred             HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH
Q 022608          104 ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF  183 (294)
Q Consensus       104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~  183 (294)
                      .+.+.... |                ..........+.++.|+..+........++.+..|++      .|+++.++++.
T Consensus       288 ~l~a~~~~-~----------------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~------~~at~Q~l~~~  344 (400)
T PF03825_consen  288 LLYAYFSD-P----------------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE------LRATAQGLYSA  344 (400)
T ss_pred             HHHHHhcC-C----------------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc------chHHHHHHHHH
Confidence            66665520 0                0001122333446789999999999999999999998      58999998876


Q ss_pred             H-HHHHHHHHHHhhhheeeccchh
Q 022608          184 V-MGAAILVAVTVLVYIQDNIGWG  206 (294)
Q Consensus       184 ~-~~ig~~~~~~~~~~l~~~~g~~  206 (294)
                      . ..+|..+|..++|++.+.+|-+
T Consensus       345 ~~~Glg~~iG~~igG~l~~~~g~~  368 (400)
T PF03825_consen  345 LSFGLGGAIGSLIGGWLYDAFGAR  368 (400)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcch
Confidence            4 6799999999999999887644

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.73  E-value=7.7e-08  Score=89.13  Aligned_cols=73  Identities=11%  Similarity=-0.094  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIAS   96 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~   96 (294)
                      ..+.+....+..-+++-...++++.+++++.|++..+.|.+.++..+...+.+|+.|.++||+ |.||-++...
T Consensus         8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i   80 (412)
T PF01306_consen    8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHH
Confidence            445555555555555556678899999988999999999999999999999999999999998 9666555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.72  E-value=9.9e-07  Score=82.51  Aligned_cols=168  Identities=15%  Similarity=-0.000  Sum_probs=102.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.++......++....++.+....|.|+++.+|.+..+.++......++..++..+.+.+.++. ++++.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            3455555555666677777777789999988999999999988777778888777777766544 444444333344444


Q ss_pred             HHHHHHHHhh-cCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          102 GMICLTISAI-LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       102 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +.+++..... .+                  ...+..+++.++.++|.+...++.....-.  +.+.     .+|+..+.
T Consensus       297 g~~l~~~~~~~~~------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al~--~~~~-----~~G~a~a~  351 (413)
T PRK15403        297 GLALLIVGNLLWP------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTLF--SNNL-----PKGTVSAS  351 (413)
T ss_pred             HHHHHHHHHHHcc------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHhc--cCCC-----CCcHHHHH
Confidence            4444332210 01                  023334567777788888877776643322  2222     25666677


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~  216 (294)
                      ++.....+..+++...+++... +-...|....++.
T Consensus       352 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~  386 (413)
T PRK15403        352 LNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVA  386 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHH
Confidence            6666666777777777776544 3344454444433

>PRK11462 putative transporter; Provisional

Probab=98.72  E-value=1.1e-06  Score=83.35  Aligned_cols=157  Identities=13%  Similarity=0.081  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICL  106 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~  106 (294)
                      ++...++..+...........|.+..+|.+ ...+.+...+.+...++.+++++++||+ |+|+++..+..+..+..++.
T Consensus       233 l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~  310 (460)
T PRK11462        233 VGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAM  310 (460)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHH
Confidence            333334444443333344444444444433 3345566677777888899999999998 99988775554444433333


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCCh-hhhhhhhhHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDP-KQATKTWKYFNWYYFVM  185 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-~~~~~rg~~~~~~~~~~  185 (294)
                      .+..                    ..+...+++..++.|++.+...+...++++|..+.++- .++++.|..++...+..
T Consensus       311 ~~~~--------------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~  370 (460)
T PRK11462        311 FFVP--------------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVL  370 (460)
T ss_pred             HHhc--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHH
Confidence            2221                    11223334444566777777777778888888774432 12334566677777788


Q ss_pred             HHHHHHHHHhhhheeeccch
Q 022608          186 GAAILVAVTVLVYIQDNIGW  205 (294)
Q Consensus       186 ~ig~~~~~~~~~~l~~~~g~  205 (294)
                      .+|..+++.+.+.+.+..|+
T Consensus       371 Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        371 KLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHcCC
Confidence            88888888877765543333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.70  E-value=2e-09  Score=103.70  Aligned_cols=193  Identities=12%  Similarity=0.217  Sum_probs=3.0

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~  108 (294)
                      +..+.+ ...+++......-+++.|+++..++|++.+.+.++..+..++..++.+|. -|.|.+-+|.++..+|.+++++
T Consensus        10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc
Confidence            344444 66666666666778889999999999999999999999999999999996 7888899999999999988876


Q ss_pred             HhhcCCCCCCCCC-------------Ccccc-------------------ccccchhHHHHHHHHHHHHHhccCcchhhh
Q 022608          109 SAILPQLRPPPCE-------------GEQVC-------------------QEANKGQVAILYVSLLLAALGSGGIRPCVV  156 (294)
Q Consensus       109 ~~~~~~~~~~~~~-------------~~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~  156 (294)
                      ..    +....|.             +.+.|                   .+.......+++++.++.|+|....++...
T Consensus        88 Ph----f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~  163 (539)
T PF03137_consen   88 PH----FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI  163 (539)
T ss_dssp             --------------------------------------------------------------------SSS---------
T ss_pred             cH----hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence            44    2222221             01122                   111112346778899999999999999999


Q ss_pred             hhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec---------------------cc-hhhhhhHhHH
Q 022608          157 AFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN---------------------IG-WGWGLGIPTF  214 (294)
Q Consensus       157 ~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~---------------------~g-~~~~f~~~~~  214 (294)
                      +|+=|..+++      .-+...+.++....+|.++|.++++...+.                     .| |+..|.+.++
T Consensus       164 tYiDDnv~~~------~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~  237 (539)
T PF03137_consen  164 TYIDDNVSKK------NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGI  237 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeccccccc------cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            9999999888      478888899999999999998887754321                     23 7777777777


Q ss_pred             HHHHHHHHHHHhccceecc
Q 022608          215 AMFLSIIAFLIGYPLYRNL  233 (294)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~  233 (294)
                      +.++..+.++.+.++.+..
T Consensus       238 ~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  238 LLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHcCCccCCCc
Confidence            6666666665555555444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.69  E-value=5.6e-07  Score=85.84  Aligned_cols=182  Identities=9%  Similarity=0.017  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHH----HHHHHHHHHHHHhhhHHHHH----HHHHhhcchhHH--HHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK----AANTLTNFGGTGSLTPLIGA----FVADAYAGRFWT--ITIAS   96 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~G----~laDr~~Grr~~--l~~~~   96 (294)
                      ++....+....+.-..+.++.|.++..+.+...    .+++.+.-.+...+.+++..    ++.||..+.+..  +.+|+
T Consensus       277 l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~  356 (475)
T TIGR00924       277 LFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGM  356 (475)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence            334444444555555566777776654443222    44555555555555555433    445541122333  36788


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608           97 IIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus        97 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      ++..++.+.+.+......             .....+.+.+....++.++|.....|...+++++..|++      .||+
T Consensus       357 ~l~~~~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~------~~g~  417 (475)
T TIGR00924       357 LFCGASFLTFAASIWFAD-------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR------LMGQ  417 (475)
T ss_pred             HHHHHHHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHH
Confidence            888888777665321100             001236777888889999999999999999999999998      6999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhc
Q 022608          177 YFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       177 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      .++.++....+|..+++.+........+|...|...+++.++..++++...
T Consensus       418 ~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       418 MLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877666666777777766666555555544433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.69  E-value=1.3e-06  Score=80.08  Aligned_cols=166  Identities=12%  Similarity=0.172  Sum_probs=126.6

Q ss_pred             HHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 022608           33 CEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAIL  112 (294)
Q Consensus        33 ~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~  112 (294)
                      ...+++++=-..+=+|--+.||++..+...+...+..+..++-.+.|++..|..+++++..+++.+..++..+..++.  
T Consensus       219 l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~--  296 (403)
T PF03209_consen  219 LGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAG--  296 (403)
T ss_pred             HHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH--
Confidence            334444433344557888899999999999999999999999999999988555899999999999988888877766  


Q ss_pred             CCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 022608          113 PQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA  192 (294)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~  192 (294)
                                       ...+.+.+..+.+++|+|.|.+.......+.|...+.      +.|..++.+-....+...++
T Consensus       297 -----------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~------~aG~~mG~WGaaQA~A~Glg  353 (403)
T PF03209_consen  297 -----------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG------RAGLFMGAWGAAQAIARGLG  353 (403)
T ss_pred             -----------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc------chhHHHHHHHHHHHHHHHHH
Confidence                             2236788999999999999999988888999988776      58889998887777777777


Q ss_pred             HHhhhheee----------ccchhhhhhHhHHHHHHHHHHH
Q 022608          193 VTVLVYIQD----------NIGWGWGLGIPTFAMFLSIIAF  223 (294)
Q Consensus       193 ~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~  223 (294)
                      ..+++.+.|          ..+|...|.+-++.+++++++.
T Consensus       354 ~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  354 TFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            666655433          2345556666666555554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.66  E-value=1.5e-06  Score=80.28  Aligned_cols=134  Identities=12%  Similarity=0.017  Sum_probs=101.6

Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 022608           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (294)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  123 (294)
                      ...+|.++-+| +...+-+...++++++....+.+-|+.|++ |-|...+++..+.++|..+-..+. .|..        
T Consensus        66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v--------  134 (480)
T KOG2563|consen   66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFV--------  134 (480)
T ss_pred             hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccc--------
Confidence            35567776777 777788889999999999999999999998 999999999999999998877765 3321        


Q ss_pred             cccccccchhHH--HHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee
Q 022608          124 QVCQEANKGQVA--ILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       124 ~~~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~  201 (294)
                             +...+  ....+..+.+...-......+-..+-+|++++      |..+...-.++..+|.+++.++.+.+..
T Consensus       135 -------~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  135 -------PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             -------cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence                   11223  55667777777666666555566677899884      8888887777777888888777665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.57  E-value=4e-06  Score=76.60  Aligned_cols=140  Identities=15%  Similarity=0.123  Sum_probs=109.9

Q ss_pred             hhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022608           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (294)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~  119 (294)
                      ++-+++++|+.+..|.+..+++...+.+..+.++|.+++.++..|+ ...|.+.+.+++.++..+...+..         
T Consensus       254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~---------  323 (422)
T COG0738         254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIG---------  323 (422)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence            3457899999888999999999999999999999999999999997 888988888766665555555544         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                                   +.+. +.+.++.|+..+.+.|.+.+...+..|.+.     ..+...   -....+|+++.|.+.|++
T Consensus       324 -------------g~v~-~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~~---l~maivGGAiiP~l~G~i  381 (422)
T COG0738         324 -------------GVVA-LYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSGL---LVMAIVGGAIIPPLQGVI  381 (422)
T ss_pred             -------------ChHH-HHHHHHHHHHhHHHHHHHHHHHHhccCccc-----ccccee---eeeheecchHHHHHHHHH
Confidence                         3222 334566788999999999999999999664     233222   224567999999999999


Q ss_pred             eeccchhhhhhH
Q 022608          200 QDNIGWGWGLGI  211 (294)
Q Consensus       200 ~~~~g~~~~f~~  211 (294)
                      .|..|....+..
T Consensus       382 ~d~~g~~~~~~~  393 (422)
T COG0738         382 ADMFGIQLTFLI  393 (422)
T ss_pred             HHhhhhHHHHHH
Confidence            999988876663

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.51  E-value=8.2e-06  Score=70.53  Aligned_cols=145  Identities=19%  Similarity=0.275  Sum_probs=104.6

Q ss_pred             HHHHHHhhhhcCCCH--HHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 022608           43 TNMISYLTTQLHMPL--TKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPC  120 (294)
Q Consensus        43 ~~l~~yl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~  120 (294)
                      ...+.+. ...+.+.  ...++......+...++.++.|.++||+ |||+.+..+.....++.+...+..          
T Consensus        23 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------   90 (338)
T COG0477          23 PALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAP----------   90 (338)
T ss_pred             HHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCc----------
Confidence            3344444 3444444  5788889999999999999999999998 999888888766555544444443          


Q ss_pred             CCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCC-CChhhhhhhhhHHHHHHH-HHHHHHHHHHHhhhh
Q 022608          121 EGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDE-TDPKQATKTWKYFNWYYF-VMGAAILVAVTVLVY  198 (294)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~rg~~~~~~~~-~~~ig~~~~~~~~~~  198 (294)
                               . ...+.+.+.+.+.|++.+...+...+++.|.+|. .      +|+...+.... ...+|..+++.+.+.
T Consensus        91 ---------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (338)
T COG0477          91 ---------N-VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEAT------ERGLAVGLVTLGAGALGLALGPLLAGL  154 (338)
T ss_pred             ---------c-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0 2467788888889999999999999999999987 3      47888887777 567777777766555


Q ss_pred             eee--ccchhhhhhHhHHH
Q 022608          199 IQD--NIGWGWGLGIPTFA  215 (294)
Q Consensus       199 l~~--~~g~~~~f~~~~~~  215 (294)
                      +..  ..+|+..|.+....
T Consensus       155 ~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         155 LLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHhcchHHHHHHHHHH
Confidence            443  35677755544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.50  E-value=4.9e-06  Score=78.47  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=114.1

Q ss_pred             HHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--cc--hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022608           44 NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY--AG--RFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (294)
Q Consensus        44 ~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G--rr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~  119 (294)
                      ....|+++++|+++++...+.+...+-.. .-++.|.++|.+  +|  ||+-++++.++..++.+.+....   .     
T Consensus        11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~-----   81 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---A-----   81 (433)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---c-----
Confidence            35578889999999998876666655544 667888999986  34  55666667766655555554432   1     


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                                ...+.....+..++..+|........-+++.|....+..    .+|...++.+....+|++++..+.|.+
T Consensus        82 ----------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l  147 (433)
T PF03092_consen   82 ----------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPL  147 (433)
T ss_pred             ----------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                      011334445566777889999999999999998766542    378888899999999999999999999


Q ss_pred             eeccchhhhhhHhHHHHHHHHHH
Q 022608          200 QDNIGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       200 ~~~~g~~~~f~~~~~~~~~~~~~  222 (294)
                      .+..+++..|.+.+++..+..+.
T Consensus       148 ~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen  148 LDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             hhcCCCeEEehHHHHHHHHHHHH
Confidence            99889998888887765555433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=3.5e-07  Score=83.20  Aligned_cols=163  Identities=10%  Similarity=0.054  Sum_probs=117.5

Q ss_pred             HHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHhh
Q 022608           34 EKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG--RFWTITIASIIYQIGMICLTISAI  111 (294)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--rr~~l~~~~~~~~i~~i~~~~~~~  111 (294)
                      .+.+.-.....++.+..+++..+.-+.++...-..+.+.++..+.|.++||+ +  |......++++..+......+.. 
T Consensus       282 ~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G~~~~~iP~~~-  359 (464)
T KOG3764|consen  282 SNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVGVSSGPIPFAT-  359 (464)
T ss_pred             ccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHHHHhchhHhhh-
Confidence            4444445566677888888886666888888888999999999999999998 8  42233333332222222222222 


Q ss_pred             cCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 022608          112 LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILV  191 (294)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~  191 (294)
                                           ++..+++-+...+++.+...+...+......+.+...+-...|..+++...+..+|.++
T Consensus       360 ---------------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~  418 (464)
T KOG3764|consen  360 ---------------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAI  418 (464)
T ss_pred             ---------------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhc
Confidence                                 66778888888888888888887777777777654322225788899999999999999


Q ss_pred             HHHhhhheeeccchhhhhhHhHHHHHHH
Q 022608          192 AVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       192 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~  219 (294)
                      ||.++|.+.+..|+.|...+.++..++-
T Consensus       419 GP~~gg~iv~~iGF~wl~~iig~~n~iy  446 (464)
T KOG3764|consen  419 GPTFGGSLVEAIGFEWLMTIIGILNLIY  446 (464)
T ss_pred             cccccchheeehhHHHHHHHHHHHHHHH
Confidence            9999999999999988776666654443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.47  E-value=2e-06  Score=82.06  Aligned_cols=164  Identities=16%  Similarity=0.127  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh---cchhHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTITIASIIY   99 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l~~~~~~~   99 (294)
                      .+|...+..++.....|++..++|.|+++..|++..+++++...+.++..++.+++|+++||.   +.+|......+.++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            566677888888899999999999999986779999999999999999999999999999993   26666666555444


Q ss_pred             H-HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608          100 Q-IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus       100 ~-i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      . ++.+.+....                      .......+.+....+.+...++...-..+....+.     ++-+..
T Consensus       354 ~~~g~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~~  406 (495)
T KOG2533|consen  354 AIIGAISLLAAA----------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTTV  406 (495)
T ss_pred             HHHHHHHHHhhc----------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHHH
Confidence            3 3433333322                      11112222222223333334444444555555543     444445


Q ss_pred             HHHHHHHHHHHHHH-HHhhhheeeccchhhhhhHhH
Q 022608          179 NWYYFVMGAAILVA-VTVLVYIQDNIGWGWGLGIPT  213 (294)
Q Consensus       179 ~~~~~~~~ig~~~~-~~~~~~l~~~~g~~~~f~~~~  213 (294)
                      +....+.+.++.++ ++..+.....++|.+.|....
T Consensus       407 ~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  407 SAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             hhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            55555555544444 444555666678888884433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.42  E-value=9.1e-06  Score=77.84  Aligned_cols=146  Identities=12%  Similarity=0.071  Sum_probs=97.6

Q ss_pred             HHHhHHhhHHHHHHHhhhhcCCCHH----HHHHHHHHHHHHHhhhHHHHHHHHHhhcchhH-------HHHHHHHHHHHH
Q 022608           34 EKLAVVGFNTNMISYLTTQLHMPLT----KAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-------TITIASIIYQIG  102 (294)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-------~l~~~~~~~~i~  102 (294)
                      ....+......++.|.++..+.+..    ...++.+...+...+..++.|++.||+ |+|+       -+.+|.++..++
T Consensus       281 f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~  359 (489)
T PRK10207        281 FYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLG  359 (489)
T ss_pred             HHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHH
Confidence            3344444446677777643333210    123344444455667788889999998 9886       366777777777


Q ss_pred             HHHHHHHhh-cCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          103 MICLTISAI-LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       103 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      .+.++.... ...             .....+.+.+....++.|+|.+...+....++.+..|++      .+|.+++.+
T Consensus       360 ~~~~~~~~~~~~~-------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~------~~g~~~g~~  420 (489)
T PRK10207        360 FLTAAAAGMWFAD-------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH------LMGFILGMW  420 (489)
T ss_pred             HHHHHHHHHhhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH------HHHHHHHHH
Confidence            654432210 000             001124555667778899999999999999999999998      599999999


Q ss_pred             HHHHHHHHHHHHHhhhhe
Q 022608          182 YFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l  199 (294)
                      ++..++|+.++..+....
T Consensus       421 ~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        421 FLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999988776544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.40  E-value=1.3e-05  Score=77.08  Aligned_cols=169  Identities=14%  Similarity=0.017  Sum_probs=106.0

Q ss_pred             HHHHHhHHhhHHHHHHHhhh--hcCCCHH------HHHHHHHHHHHHHhhhHHHH----HHHHHhhcchhHHHHHHHHHH
Q 022608           32 VCEKLAVVGFNTNMISYLTT--QLHMPLT------KAANTLTNFGGTGSLTPLIG----AFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        32 ~~~~~~~~~~~~~l~~yl~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~----G~laDr~~Grr~~l~~~~~~~   99 (294)
                      +.....+|.+...++.++..  ..+.+..      ..+++.+.-.+...+..++.    +++.||+ +..+.+.+|.++.
T Consensus       282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~  360 (500)
T PRK09584        282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC  360 (500)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence            34455566666666666542  1112111      13344444444444555555    5555554 5668888899999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.+.+......+.             .....+.+.+....++.++|.+...|....++.+..|++      .||+.++
T Consensus       361 ~l~f~~l~~~~~~~~-------------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~------~rg~~~g  421 (500)
T PRK09584        361 SGAFLVLPLGAKFAN-------------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQR------LMGFIMG  421 (500)
T ss_pred             HHHHHHHHHHHHhcC-------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHH------HHHHHHH
Confidence            999888776652211             001124556777889999999999999999999999998      6999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhee----------eccchhhhhhHhHHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQ----------DNIGWGWGLGIPTFAMFLSI  220 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~----------~~~g~~~~f~~~~~~~~~~~  220 (294)
                      .+++...+|+.++..+.+...          ...++...|...+++.++..
T Consensus       422 ~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a  472 (500)
T PRK09584        422 SWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIA  472 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHH
Confidence            998887777777766654221          11135566665555544333

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.40  E-value=3e-06  Score=83.12  Aligned_cols=200  Identities=12%  Similarity=0.186  Sum_probs=144.7

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      +.++.++....+......++.....+-+.+.++++..+.|++.+.+-++..+...+.++.+-|. -|.+.+-+|.+++.+
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence            4455455444444333346666666777789999999999999999999999999999999997 788889999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCC------------------------------C-ccccc--cccchhH-HHHHHHHHHHHHh
Q 022608          102 GMICLTISAILPQLRPPPCE------------------------------G-EQVCQ--EANKGQV-AILYVSLLLAALG  147 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~------------------------------~-~~~~~--~~~~~~~-~~~~~~~~l~g~g  147 (294)
                      +.++.++...+    ..+|.                              + .+.|.  ...+..+ .+++++.++.|+|
T Consensus       175 gsll~alPHf~----~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG  250 (735)
T KOG3626|consen  175 GSLLFALPHFF----SGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIG  250 (735)
T ss_pred             HHHHHhChHHh----cCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcC
Confidence            99888765322    22221                              0 01111  1222223 3677888999999


Q ss_pred             ccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec------------------cc-hhhh
Q 022608          148 SGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN------------------IG-WGWG  208 (294)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~------------------~g-~~~~  208 (294)
                      ....++...+|+=|-..++      .-...+++++....+|.++|.++++++...                  .| |+..
T Consensus       251 ~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlG  324 (735)
T KOG3626|consen  251 ATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLG  324 (735)
T ss_pred             CCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHH
Confidence            9999999999998877766      478888999999999999999888765321                  13 7788


Q ss_pred             hhHhHHHHHHHHHHHHHhccceec
Q 022608          209 LGIPTFAMFLSIIAFLIGYPLYRN  232 (294)
Q Consensus       209 f~~~~~~~~~~~~~~~~~~~~~~~  232 (294)
                      |.+.+.+.++..+.++++.+.+++
T Consensus       325 FLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  325 FLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHHHHHHHHHhCcccCcc
Confidence            888888777776666666555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.36  E-value=2.2e-05  Score=72.19  Aligned_cols=141  Identities=16%  Similarity=0.067  Sum_probs=96.5

Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc-----hhH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc
Q 022608           50 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG-----RFW-TITIASIIYQIGMICLTISAILPQLRPPPCEGE  123 (294)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----rr~-~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~  123 (294)
                      ..+++++..-.+..+....+... ..+..|..||++ +     ||. -+..|.++...+..+...+...-+-      +.
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~------~~   78 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAE------SG   78 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcc------cc
Confidence            34688888888888777776655 688999999998 6     554 4445566666655555443211000      00


Q ss_pred             cccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeecc
Q 022608          124 QVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (294)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~  203 (294)
                      +.-..+.........++.++.|+|.+...+...++.+|..|++      +|++..++.+...-+|..++.++.+.+.+.+
T Consensus        79 ~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen   79 QQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             cccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            0000011112223445557779999999999999999999998      6999999999999999999999988776665


Q ss_pred             c
Q 022608          204 G  204 (294)
Q Consensus       204 g  204 (294)
                      .
T Consensus       153 s  153 (403)
T PF03209_consen  153 S  153 (403)
T ss_pred             C
Confidence            4

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.34  E-value=1.3e-06  Score=83.14  Aligned_cols=136  Identities=9%  Similarity=-0.103  Sum_probs=103.8

Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccc
Q 022608           50 TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEA  129 (294)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~  129 (294)
                      ++.+|+++...+.+.....++..++..+.+++.+|+ +.|+++.++.++..++.+.......-.....            
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~------------  346 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF------------  346 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc------------
Confidence            457899999999999999999999999999999987 9999999998888777654321110000000            


Q ss_pred             cchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccc
Q 022608          130 NKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG  204 (294)
Q Consensus       130 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g  204 (294)
                      .....+.+....++.+++.+....+...++.+..|++      .+|+.++++....++|..+++.+++.+.+..|
T Consensus       347 gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~------~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       347 GISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSG------CESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCC------ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            0002223444456777887888888899999999998      49999999999999999999998888887776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.29  E-value=2.3e-05  Score=74.26  Aligned_cols=168  Identities=17%  Similarity=0.127  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHhHHhhH---HHHHHHhhhhcCCCHHH-HHHHHHH----HHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFN---TNMISYLTTQLHMPLTK-AANTLTN----FGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~---~~l~~yl~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      +....+...++++...   .+...+.....+.+..+ .+.....    ..+...+.+++-|.++||+ |||..+......
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence            3444444555544444   44455555444433322 2223333    3567778889999999998 999999998887


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHH--HhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAA--LGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      ..+..+...+..                       +|.+.    +.+  -+.+...+...++++|....+      .|..
T Consensus       102 ~~l~~~~~~~~~-----------------------~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~------~R~~  148 (463)
T KOG2816|consen  102 TILPALCLLFQG-----------------------YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE------ERSS  148 (463)
T ss_pred             HHHhHHHHHHHH-----------------------HHHhh----hcccccchhhhhhhhhhheeeccchh------HHHH
Confidence            777766655532                       22222    222  233445667788899988877      5999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          177 YFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       177 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      .++..+.+...+..++|.+++++....|....|.+..+..++..+...+..+
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~  200 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLP  200 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccc
Confidence            9999998888999999999999988888888899888877777655554444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.29  E-value=2.2e-05  Score=75.55  Aligned_cols=183  Identities=13%  Similarity=0.109  Sum_probs=97.6

Q ss_pred             CcchHHHHHHHHHHHHHhHH-hhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVV-GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      .+++....+.+..++.++-+ .+..+.+..+ +..|.+... ............++..++.++.||+ |||+.++.+...
T Consensus       292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if-~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIF-KSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             hHHHHHHHHHHHHHHHHhCCceEEeehHHHH-HhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            44555544555555554443 3334444444 455665443 4555566666667777889999998 999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHH-HHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL-YVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      +.++.++++..........       .+.  .......+ .....+..+.. +..+....+.+|.+|.+      .|+.+
T Consensus       369 m~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~v~~f~~-g~g~v~w~~~sEifp~~------~r~~~  432 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALYYP-------NSS--KGAGWLAIVFLCLFIFSFAI-GWGPVPWVIVSEIFPLR------LRSKG  432 (513)
T ss_pred             HHHHHHHHHHHHHHhccCC-------Ccc--cchhHHHHHHHHHHHHHHhc-ccccchhhhhhccCcHh------HHhhh
Confidence            9999888876541111000       000  00011222 22222323333 33445567889999998      47777


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      .++-.....+...+-......+....++...|........+..+
T Consensus       433 ~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  433 ASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            76644444333333322222222222233444444444444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.27  E-value=6.9e-05  Score=71.31  Aligned_cols=206  Identities=10%  Similarity=-0.028  Sum_probs=132.4

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhh-hcCCCHH------HH---H-HHHHHHHHHHhhhHHHHHHHHHhhc
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPLT------KA---A-NTLTNFGGTGSLTPLIGAFVADAYA   86 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~~------~~---~-~~~~~~~~~~~~~~~~~G~laDr~~   86 (294)
                      ++-++.++.+..++++.-++++.+..+.+.|..+ .++-++.      +.   + +......+...+.+++--++.+++ 
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            3456788889999999999999888888888764 4543321      11   2 222333334445556667788887 


Q ss_pred             ch-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCC
Q 022608           87 GR-FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDE  165 (294)
Q Consensus        87 Gr-r~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  165 (294)
                      |+ |++..++.++..++++...+..+.++-.. .....+-...++.+..+..++...+.|+..+.....-.+++++..++
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~  411 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSR-YYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN  411 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhccc-cccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence            85 66668887888888777765442110000 00000000001112245566666788999999999999999998885


Q ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccc--hhhhhhHhHHHHHHHHHHHHHhccc
Q 022608          166 TDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG--WGWGLGIPTFAMFLSIIAFLIGYPL  229 (294)
Q Consensus       166 ~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~  229 (294)
                      ++    ++.|..++++|.+..+...+..+..|.+.+.+|  -.+.+.+.++..+++.+..+...|+
T Consensus       412 ~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       412 LG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             cC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            32    157999999999999999998887777555444  3466777777777666655544443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.27  E-value=7.9e-05  Score=71.09  Aligned_cols=173  Identities=15%  Similarity=0.015  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHH
Q 022608           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIA-SIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILY  138 (294)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~-~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (294)
                      .+...++..+...+..|+.|.++|+- |+||.++.. .++.++..+++.+..                    +.+++...
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~--------------------~~~~~~~~  130 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS--------------------PGQWWLAL  130 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC--------------------cchHHHHH
Confidence            35667788888889999999999997 766655544 455555666555543                    11333333


Q ss_pred             HHHHHHHHhccCcchhhhhhhhcccCCCChhhhh--------------------hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 022608          139 VSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT--------------------KTWKYFNWYYFVMGAAILVAVTVLVY  198 (294)
Q Consensus       139 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~--------------------~rg~~~~~~~~~~~ig~~~~~~~~~~  198 (294)
                      +..++..++.+.......+++.|..+++...+..                    .|++..+.-+...++|+.+...+.-.
T Consensus       131 ~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~  210 (477)
T PF11700_consen  131 VLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLL  210 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556677777888899999998887520000                    12788888777788888877665433


Q ss_pred             eee--------ccchhhhhhHhHHHHHH-HHHHHHHhcccee--ccCCCCChhHHHHHHHHHHHHh
Q 022608          199 IQD--------NIGWGWGLGIPTFAMFL-SIIAFLIGYPLYR--NLDPAGSPFTRLLQVCVAAFRK  253 (294)
Q Consensus       199 l~~--------~~g~~~~f~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  253 (294)
                      +..        ....|..+.+.++--++ ++..++..+++.+  ..++..+......+.+...+|+
T Consensus       211 ~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~  276 (477)
T PF11700_consen  211 LVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKE  276 (477)
T ss_pred             HHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            211        12235555555554333 3333333333322  1222233344444555555554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.25  E-value=1.4e-05  Score=56.57  Aligned_cols=63  Identities=21%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             HHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           34 EKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        34 ~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      ...+...+.++++.|++ +.|+|..+.+.+.++..+...++++++|+++||+ |+++.++....+
T Consensus        12 ~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen   12 YFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            33344445678888887 5899999999999999999999999999999998 988888776544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.18  E-value=0.00011  Score=71.40  Aligned_cols=150  Identities=8%  Similarity=-0.002  Sum_probs=102.7

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHH---HHHHHHHHHHHHHhhhHHHHHHHHHhhcchhH-HHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLT---KAANTLTNFGGTGSLTPLIGAFVADAYAGRFW-TITI   94 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~-~l~~   94 (294)
                      ++.|.+...+++.++..+.+|.+..+.|......++-|..   ..+++......+..++.++.|.+.-++ +|-| .+++
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~  385 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF  385 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence            3456777777888888888998888888888777776653   567777788888888889999999876 6644 4456


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhh
Q 022608           95 ASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKT  174 (294)
Q Consensus        95 ~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  174 (294)
                      +.+++.++...++...  |                  .+....+...++.|+|.|...........-..|++      ..
T Consensus       386 ~~~~~ta~~Gama~~~--~------------------~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~------~i  439 (599)
T PF06609_consen  386 GSVLMTAFCGAMAAVR--P------------------DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE------DI  439 (599)
T ss_pred             HHHHHHHHHHHHHHcc--C------------------CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch------HH
Confidence            6666555444443332  1                  12333445566778888887766555555555654      47


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 022608          175 WKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       175 g~~~~~~~~~~~ig~~~~~~~  195 (294)
                      |...++......+|+.+|..+
T Consensus       440 g~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  440 GTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             HHHHHHHHHHHHHhhHHHHHH
Confidence            788877777777777777654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.15  E-value=2.5e-05  Score=73.82  Aligned_cols=170  Identities=9%  Similarity=-0.058  Sum_probs=121.9

Q ss_pred             HHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 022608           29 SNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTI  108 (294)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~  108 (294)
                      +..++..+..-.+.+++--+++ +.+-...--|.....-..+-.+.-++.+++..|+ |+-+++..+++...+=.+....
T Consensus       378 ~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~  455 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY  455 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence            3333444444444555545554 3443333333223333334445667788999998 9999999998887777766666


Q ss_pred             HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHH-HHHH
Q 022608          109 SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYF-VMGA  187 (294)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~-~~~i  187 (294)
                      ..                      ++|+....-++.|+-.+.++.++.+|+++..|++      .+.++.++.+. ...+
T Consensus       456 L~----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~------l~at~Q~l~~g~f~Gl  507 (618)
T KOG3762|consen  456 LQ----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPG------LRATAQGLLQGIFHGL  507 (618)
T ss_pred             hc----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc------chHHHHHHHHHHhccc
Confidence            55                      7888888889999999999999999999999998      47777776554 3466


Q ss_pred             HHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          188 AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       188 g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      |-.+|.+++|.+...+|-+..|.+.++..++.++.+.....
T Consensus       508 G~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  508 GKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             CcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77788888898888889888898888888777776665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.09  E-value=1.2e-08  Score=96.12  Aligned_cols=180  Identities=14%  Similarity=0.077  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      +....+....+..+..+....+...++.+..+.+..  ........+...++.+++.++.||+ |||+.++.+.++..++
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            444444455555444433344444444455666666  2233344455556777778999998 9999999998887777


Q ss_pred             HHHHH-HHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhcc-CcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          103 MICLT-ISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSG-GIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       103 ~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      .+.+. .....+.-         +    ...+...+. ...+...+.+ +..+....+.+|.||++      .|+++.+.
T Consensus       330 ~~~~~~~~~~~~~~---------~----~~~~~~~i~-~~~l~~~~~~~g~~~~~~~~~~ElfPt~------~R~~~~~~  389 (451)
T PF00083_consen  330 SLILGIIFFLGVSS---------S----SWWSILSIV-FLALFFAFFSLGWGPLPWIYTAELFPTK------VRSTGIGL  389 (451)
T ss_pred             cccccccccccccc---------c----cccccccce-eeeecccccccccccccccccccccccc------cccccccc
Confidence            66654 11100000         0    000111111 1111212222 33455568889999998      49999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      .+....+++.+++.+..++.+..+-...+.+.+++.++..+...+
T Consensus       390 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  390 SYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            888888999998888888777666334455544444444443333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.04  E-value=8.8e-06  Score=75.48  Aligned_cols=178  Identities=15%  Similarity=0.067  Sum_probs=117.6

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHH--------HHHHHHHHHh-hhHHHHHHHHHhhcchhHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAAN--------TLTNFGGTGS-LTPLIGAFVADAYAGRFWTI   92 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~G~laDr~~Grr~~l   92 (294)
                      +.++-.....|...+++|+...+...-++ ..++.+.+...        ...+...+.. .+..++..+.|++ ||++..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            34444445666677777776655555443 34443332222        2222233333 3666777889998 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 022608           93 TIASIIYQIGMICLTISAI-LPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (294)
Q Consensus        93 ~~~~~~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  171 (294)
                      +.+.+++.+....+....+ .+                +  ....+....+..-++..+..+....+.+|.||++     
T Consensus       382 ~~GF~~~~i~~~~~~~~y~~~~----------------~--~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar-----  438 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYNQLE----------------N--TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR-----  438 (538)
T ss_pred             HhhHHHHHHHHHHHcCCccccc----------------c--cCceeehHHHHHHHHhcCCCceeEEeehhhchHH-----
Confidence            9999888777666554331 10                0  1111112222334555566667777789999998     


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhhheee-----ccchhhhhhHhHHHHHHHHHHHHH
Q 022608          172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQD-----NIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       172 ~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~-----~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                       .|++.-++...+.-+|+.++.....++.+     ..|.++.+++.+.+++++.+.-++
T Consensus       439 -vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l  496 (538)
T KOG0252|consen  439 -VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL  496 (538)
T ss_pred             -HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence             59999999999999999999999888888     778889999988888777655443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.97  E-value=0.00015  Score=71.71  Aligned_cols=83  Identities=18%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhhcc--hhHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAG--RFWTITIASII   98 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~G--rr~~l~~~~~~   98 (294)
                      +.++...+..++....++++.+++|.|+++++|++..+++++.+...+ +..++.+++|++.||+ +  .|+.+.++.++
T Consensus       330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~  408 (633)
T TIGR00805       330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL  408 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence            355556677888888999999999999999999999999999887776 5678999999999997 7  45677777666


Q ss_pred             HHHHHHH
Q 022608           99 YQIGMIC  105 (294)
Q Consensus        99 ~~i~~i~  105 (294)
                      .+++.+.
T Consensus       409 ~~~~~~~  415 (633)
T TIGR00805       409 STLSYLL  415 (633)
T ss_pred             HHHHHHH
Confidence            6666544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.94  E-value=4.2e-07  Score=79.36  Aligned_cols=136  Identities=12%  Similarity=0.129  Sum_probs=110.8

Q ss_pred             HHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 022608           42 NTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (294)
Q Consensus        42 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~  121 (294)
                      -.-+-.+++.+.+++.++..++.++++.-..+..+++|++.||.+|-|+.-++-+.+..+|-++++....          
T Consensus        63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi----------  132 (459)
T KOG4686|consen   63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI----------  132 (459)
T ss_pred             chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH----------
Confidence            3445667777778888888889999999999999999999999999998877777777888877775431          


Q ss_pred             CccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee
Q 022608          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~  201 (294)
                               ....|.+..+|++.|+|.-......+.+..-+|..+|      .+-.++++.....+|+.+--.+.+++.+
T Consensus       133 ---------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  133 ---------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             ---------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHH
Confidence                     1267889999999999988888899999999999985      8889998888888888776666666554


Q ss_pred             c
Q 022608          202 N  202 (294)
Q Consensus       202 ~  202 (294)
                      .
T Consensus       198 ~  198 (459)
T KOG4686|consen  198 T  198 (459)
T ss_pred             H
Confidence            3

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.81  E-value=0.00093  Score=53.90  Aligned_cols=112  Identities=12%  Similarity=0.190  Sum_probs=82.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchh
Q 022608           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (294)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (294)
                      +++......-..+......+..++...+.+++ |.|+.+++|.+.+.+-...... .                      +
T Consensus        33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-~----------------------~   88 (156)
T PF05978_consen   33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-P----------------------N   88 (156)
T ss_pred             cccccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-h----------------------h
Confidence            34444444456666777778888888899997 9999999999887755444322 1                      5


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 022608          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       134 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~  195 (294)
                      .+.++.+-++.|+|.+..++....++.+...++      .+++-.+++....+.+..+|.++
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~------~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEE------TIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH------HHhhHHHHHHHHHHHHHHHHHHH
Confidence            677888888999999999999999999877665      47777776666656665555544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.79  E-value=2.1e-05  Score=72.92  Aligned_cols=167  Identities=13%  Similarity=0.101  Sum_probs=119.0

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhh---cchhHHHHHH-HH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAY---AGRFWTITIA-SI   97 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Grr~~l~~~-~~   97 (294)
                      +.++.+..+.+...+++-.=.+++++|++ ..|.+.+-.+.+-....+...+.+|+.|..+||.   +||||-.+.. ..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56666777777788888777888999986 6899999999888888999999999999999974   5877655544 44


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      ...++.++...+..+....-+     +...-........++++.-+.=+..-..+.+.-++.+|.....+     +..++
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd-----~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~-----~~~~A  180 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGD-----NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA-----KKTRA  180 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcC-----CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh-----hhhcc
Confidence            555666665555433222111     00000112344566677777778887888889999999987764     22228


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhe
Q 022608          178 FNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                      .+++.....+|+.+|...+++.
T Consensus       181 ns~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  181 NSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             chhHHHHHHhcceeeeeccccc
Confidence            8888889999999988777653

>PRK03612 spermidine synthase; Provisional

Probab=97.68  E-value=0.0065  Score=58.69  Aligned_cols=159  Identities=11%  Similarity=0.036  Sum_probs=88.7

Q ss_pred             HHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH---HHHH
Q 022608           30 NEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG---MICL  106 (294)
Q Consensus        30 ~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~---~i~~  106 (294)
                      ..++..++.-.+...+.-.+...+|-+....+.++++++++..+|+.++++++++. -++. ..+-..+..++   ..++
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~-~~~e~~i~l~~~~~~~ll   99 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGF-VAVELLLALLGGLSALIL   99 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHH-HHHHHHHHHHHHHHHHHH
Confidence            33344444444555666666667899999999999999999999999999887554 2222 22211111111   1111


Q ss_pred             HHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHH
Q 022608          107 TISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMG  186 (294)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~  186 (294)
                      ......                 .......++...++.++..|+..|....+..+....       +.+...+-.|...+
T Consensus       100 ~~~~~~-----------------~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~-------~~g~~~g~ly~~nt  155 (521)
T PRK03612        100 YAAFAF-----------------QGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQ-------HLGHNVATVLAADY  155 (521)
T ss_pred             HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------chhhhhhhhHhHHh
Confidence            111100                 000112223334455677777666666555443221       14455666777788


Q ss_pred             HHHHHHHHhhhhe-eeccchhhhhhHhHH
Q 022608          187 AAILVAVTVLVYI-QDNIGWGWGLGIPTF  214 (294)
Q Consensus       187 ig~~~~~~~~~~l-~~~~g~~~~f~~~~~  214 (294)
                      +|+++|.++.+++ ...+|-..+.++.+.
T Consensus       156 lGa~~G~l~~~~vLlp~lG~~~t~~~~a~  184 (521)
T PRK03612        156 LGALVGGLAFPFLLLPRLGLIRTAALTGS  184 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            8888888887754 345665434333333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.66  E-value=0.0013  Score=60.85  Aligned_cols=129  Identities=12%  Similarity=-0.051  Sum_probs=88.0

Q ss_pred             hHHHHHHHhhhhcCC---CHH----HHHHHHHHHHHHHhhhHHHHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHHhhc
Q 022608           41 FNTNMISYLTTQLHM---PLT----KAANTLTNFGGTGSLTPLIGAFVADAYAGRF-WTITIASIIYQIGMICLTISAIL  112 (294)
Q Consensus        41 ~~~~l~~yl~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr-~~l~~~~~~~~i~~i~~~~~~~~  112 (294)
                      .+.++|.|+++..+-   +..    -.+...++..+...+..|+-|-++|.. |+| +.+-+..++.++++..++...  
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~--  110 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP--  110 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC--
Confidence            346788888876544   333    345566777778888899999999998 755 455555666667777776654  


Q ss_pred             CCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 022608          113 PQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVA  192 (294)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~  192 (294)
                                       +...++...+..++..++..+.+....+++.+..++++      .++..+.-+....+|+.+.
T Consensus       111 -----------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~  167 (438)
T COG2270         111 -----------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVIL  167 (438)
T ss_pred             -----------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHH
Confidence                             11245555666678888989999999999999988874      5555555444555666555


Q ss_pred             HHh
Q 022608          193 VTV  195 (294)
Q Consensus       193 ~~~  195 (294)
                      -++
T Consensus       168 li~  170 (438)
T COG2270         168 LIF  170 (438)
T ss_pred             HHH
Confidence            443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.64  E-value=0.00035  Score=64.89  Aligned_cols=155  Identities=15%  Similarity=0.084  Sum_probs=96.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 022608           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-FWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (294)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-r~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (294)
                      .-|.+...+|.+.....+..++++.+.|.++||. .. |.++++......++...+......+                 
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~~~~l~~~t~~~-----------------  356 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVGTLMLLTCTLFL-----------------  356 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhccC-----------------
Confidence            4578888999999999999999999999999998 44 3444444444445532222222111                 


Q ss_pred             chhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccc----hh
Q 022608          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG----WG  206 (294)
Q Consensus       131 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g----~~  206 (294)
                       ...+.++....+.|+...+..|....+..|..-+..      -++-.|..+...++.+.+-.++.+...+..+    +.
T Consensus       357 -~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~  429 (480)
T KOG2563|consen  357 -GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTF  429 (480)
T ss_pred             -CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------CcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCc
Confidence             134455556666788878888888889888754442      3444556666666666666666666666555    33


Q ss_pred             hhhhHhHHHHHHHHHHHHHhcccee
Q 022608          207 WGLGIPTFAMFLSIIAFLIGYPLYR  231 (294)
Q Consensus       207 ~~f~~~~~~~~~~~~~~~~~~~~~~  231 (294)
                      ..-+.......+..++..+.++.++
T Consensus       430 ~~~i~~~~~~~l~~~lva~~r~~y~  454 (480)
T KOG2563|consen  430 PANIFLTVSALLGAILVAFFRPDYR  454 (480)
T ss_pred             cchhHhHHHHHHHHHHHhhhhhhHH
Confidence            3333333444445555555555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.64  E-value=0.0056  Score=56.95  Aligned_cols=154  Identities=11%  Similarity=0.044  Sum_probs=102.6

Q ss_pred             HHHHHHHhhhh-cCCCHHHHHH-HHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022608           42 NTNMISYLTTQ-LHMPLTKAAN-TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (294)
Q Consensus        42 ~~~l~~yl~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~  119 (294)
                      .+++..|+.+. .|++..+... +.-+.........++...+.|.+ |.|++++++.+..++...++....         
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~---------   92 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT---------   92 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC---------
Confidence            47788999987 8999988764 44555556666677888999998 999999999888777777766655         


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                                   +...+-+.-+..|++.+. .....+++--..|++      +..++.+....+.-+|-.++.+++-.+
T Consensus        93 -------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~------~yq~vts~~raa~l~g~~~s~~lgQll  152 (412)
T PF01770_consen   93 -------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKE------HYQKVTSYTRAATLVGRFISSLLGQLL  152 (412)
T ss_pred             -------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         556666666777776654 445556665555554      466666666666666666666655544


Q ss_pred             ee--ccchhhhhhHhHHHHHHHHHHHHH
Q 022608          200 QD--NIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       200 ~~--~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ..  ..++.....+......+++++.++
T Consensus       153 vs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  153 VSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            33  334555556666655556554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=97.53  E-value=0.0003  Score=63.35  Aligned_cols=84  Identities=8%  Similarity=-0.168  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec----------
Q 022608          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN----------  202 (294)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~----------  202 (294)
                      ++..+.++.++.|.|.+..++..++++++..+++      ++++.+++.+....+|..++|++++.+...          
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            6788899999999999999999999999999887      488889999999999999999998866521          


Q ss_pred             ------cchhhhhhHhHHHHHHHHHH
Q 022608          203 ------IGWGWGLGIPTFAMFLSIIA  222 (294)
Q Consensus       203 ------~g~~~~f~~~~~~~~~~~~~  222 (294)
                            ..|++.|++.+++..+..++
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  35788888655554443333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.53  E-value=0.0072  Score=58.20  Aligned_cols=120  Identities=8%  Similarity=0.007  Sum_probs=81.1

Q ss_pred             hhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccc
Q 022608           51 TQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEAN  130 (294)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (294)
                      ..+|.+......+...   .........+.+-|+. |||.....+..+..++.++.....                   .
T Consensus       346 ~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~-------------------~  402 (521)
T KOG0255|consen  346 SGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLP-------------------D  402 (521)
T ss_pred             hhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhh-------------------c
Confidence            3455554443333333   4445556668999998 999999999999888888877654                   1


Q ss_pred             chhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          131 KGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       131 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                      ....+...+...+..++.+........+.+|.+|+.      .|..+.+.......+|++++|.+....
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~------~r~~~~~~~~~~~~~~~i~ap~~~~~~  465 (521)
T KOG0255|consen  403 DLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV------VRNTAVGAISAAARLGSILAPLFPLLL  465 (521)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111112223333333444445556688999999998      599999999999999999999876443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.53  E-value=0.012  Score=56.12  Aligned_cols=167  Identities=11%  Similarity=0.032  Sum_probs=97.3

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCC-----HHHHHHHHHHHHHHHhhh-HHHHHHHHHhhcchhHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP-----LTKAANTLTNFGGTGSLT-PLIGAFVADAYAGRFWTI   92 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Grr~~l   92 (294)
                      ..+++++.+....+|-.+.|+..     --+++.+.++     .....++.....+...+. .++.+++++|+ +|++.+
T Consensus         4 ~E~~k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf   77 (472)
T TIGR00769         4 HELKKFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALF   77 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhH
Confidence            34566666666666666665433     3345666552     345566665555554544 78899999998 999988


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCcccccccc-----------chhHHHHHHHHHHHHHhccCcchhhhhhh
Q 022608           93 TIASIIYQIGMICLTISAILPQ--LRPPPCEGEQVCQEAN-----------KGQVAILYVSLLLAALGSGGIRPCVVAFG  159 (294)
Q Consensus        93 ~~~~~~~~i~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~g~g~~~~~~~~~~  159 (294)
                      .+-...+.....++++.- .|.  ...+.-.-+......+           .+....+++..=+  .|.-..+-...+++
T Consensus        78 ~~~~~~F~~~f~lF~~vl-~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el--w~~~vvS~lFW~fa  154 (472)
T TIGR00769        78 YTVISPFLGFFALFAFVI-YPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL--WGSVVLSLLFWGFA  154 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            887777666666655542 111  1000000000000000           0111122222212  22222223678899


Q ss_pred             hcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhee
Q 022608          160 ADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ  200 (294)
Q Consensus       160 ~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~  200 (294)
                      +|.+..+      +..|.++.+..+.|+|..+++.+..++.
T Consensus       155 ndi~t~~------qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       155 NQITTID------EAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988      4888999999999999999998877654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.51  E-value=0.0015  Score=59.72  Aligned_cols=151  Identities=12%  Similarity=0.106  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHh-hhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc-hhHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYL-TTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG-RFWTITIASIIYQ  100 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-rr~~l~~~~~~~~  100 (294)
                      ..+.++....+...-.|....+...++ .+.+|+++.+.|.+.+...+.+.+.+..-.+..||..| -+-.+..++++++
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            444455444444444444444455555 35789999999999999999999999988899998733 3444444444444


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      -..+++....                      ....++.+..+..+..+...++...++....|..      +||+..|.
T Consensus       341 P~~llls~~~----------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~------qrG~~~Gi  392 (451)
T KOG2615|consen  341 PAFLLLSLAR----------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQS------QRGTLNGI  392 (451)
T ss_pred             HHHHHHhccc----------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcc------cchHHHHH
Confidence            4444444333                      4567788888888988888999999999999988      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheee
Q 022608          181 YYFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~  201 (294)
                      ......++-++||.+.|.+..
T Consensus       393 ~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  393 FRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHHhhhhhhheeEE
Confidence            999999999999999987754

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.50  E-value=0.0071  Score=57.95  Aligned_cols=120  Identities=13%  Similarity=-0.005  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhhcchh-H------HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccch
Q 022608           60 AANTLTNFGGTGSLTPLIGAFVADAYAGRF-W------TITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKG  132 (294)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~G~laDr~~Grr-~------~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (294)
                      .++..+.-.+...+.+|+.+++-.|. +|| +      =+.+|+++..++...+.+......             .....
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~-------------~~~~~  375 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSA-------------MYGHS  375 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC-------------CCCCc
Confidence            45556665666666677766775554 332 1      155677777788777766542111             00113


Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHhhhhe
Q 022608          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM-GAAILVAVTVLVYI  199 (294)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~-~ig~~~~~~~~~~l  199 (294)
                      +.+.+++..++.++|.-...|...+++++..|++      -+|..++.++... .+|..++..+.+..
T Consensus       376 s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~------~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        376 SLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPG------VTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555677778889999999999999999999998      5999999987743 67777776665554

>PTZ00207 hypothetical protein; Provisional

Probab=97.45  E-value=0.0022  Score=62.66  Aligned_cols=173  Identities=15%  Similarity=0.085  Sum_probs=109.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhc-CCCHHH--HHHHHHHHHHHHhhhHHHHHHHHHhhcchhH--------
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL-HMPLTK--AANTLTNFGGTGSLTPLIGAFVADAYAGRFW--------   90 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~--------   90 (294)
                      ..+|.++...+|..-+-..+..++ .++-+.+ |.+..+  ..+.+++..+..++|.+..|.++... -||+        
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~-~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt  430 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNA-RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPIT  430 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecH-HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-Hhhccccccchh
Confidence            467777766666544444444444 3344556 663322  33378999999999999999988332 2222        


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChh
Q 022608           91 -TITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK  169 (294)
Q Consensus        91 -~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  169 (294)
                       .+.+..+ +.++.+++++..  |                    ...++++-++.|++.|..++...+..+|+|. ++  
T Consensus       431 ~~l~~~~~-~~~~~lll~~~~--p--------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~--  484 (591)
T PTZ00207        431 IALFIPSV-CIITMLTLFLTL--P--------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA-KD--  484 (591)
T ss_pred             HHHHHHHH-HHHHHHHHHHHC--C--------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cc--
Confidence             2223333 555555555543  1                    1568888999999999999999999999999 53  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHH-HHhhhheeec----c------c---hhhhhhHhHHHHHHHHHHHHHh
Q 022608          170 QATKTWKYFNWYYFVMGAAILVA-VTVLVYIQDN----I------G---WGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       170 ~~~~rg~~~~~~~~~~~ig~~~~-~~~~~~l~~~----~------g---~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                          .|+.++..+...-+|+.+- -.+.|.+-+.    .      |   ++.+|.+.+.+..++.+.-...
T Consensus       485 ----~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        485 ----PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             ----hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence                7777777777777776654 2344544321    1      2   5567777766666665554433

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.27  E-value=0.0039  Score=44.76  Aligned_cols=71  Identities=4%  Similarity=0.036  Sum_probs=60.4

Q ss_pred             HHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 022608           38 VVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISA  110 (294)
Q Consensus        38 ~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~  110 (294)
                      -+.++. +.+.++++.++|..+++++.+.-.+++.+|.+...++.++. .+++.+..+.++..+.++.+.+..
T Consensus         8 RFayTp-lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    8 RFAYTP-LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HHHHHh-HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444 45666788999999999999999999999999999999986 888999999988888888888765

Note that many members are hypothetical proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.22  E-value=0.0029  Score=60.08  Aligned_cols=151  Identities=13%  Similarity=0.155  Sum_probs=114.8

Q ss_pred             CcchHHHHHHHHHHHHHhHHhhHH-HHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH
Q 022608           20 GMITMPFIFSNEVCEKLAVVGFNT-NMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII   98 (294)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~   98 (294)
                      +.|..+.+..+.+.....-.+-.. .++.|+...++++..+.+...+.......++.++..++--+.+|-++++..|++.
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS  317 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence            345555555555544444332222 4567888899999999999999999999999998875444445999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 022608           99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF  178 (294)
Q Consensus        99 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~  178 (294)
                      -.++..+.+++.                      +.|+.+...++.++ .+...+..-++.+-+.+++      ++|+.+
T Consensus       318 ~~~~~~~~af~~----------------------~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~------e~g~v~  368 (463)
T KOG2816|consen  318 EFLQLLLFAFAT----------------------ETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPE------EQGKVF  368 (463)
T ss_pred             HHHHHHHHHHhc----------------------cchhhhHHHHHHHh-hcchhHHHHhHHHhhcccc------cccchh
Confidence            999999888877                      67777777666544 4556777888888888888      499999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhe
Q 022608          179 NWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       179 ~~~~~~~~ig~~~~~~~~~~l  199 (294)
                      ++.+....+.+.++|.+-+.+
T Consensus       369 ~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  369 GIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             hHHHHHHHHhhhhhHHHHHHH
Confidence            999999999888888876554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.00065  Score=59.32  Aligned_cols=100  Identities=18%  Similarity=0.143  Sum_probs=70.1

Q ss_pred             HHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 022608           43 TNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEG  122 (294)
Q Consensus        43 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~  122 (294)
                      .....|+-+.+++...+.+.+......-.++...+.|-|+|+. |||+.-...++.+    ++..+..+-          
T Consensus        57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitY----iLsCiTKhS----------  121 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITY----ILSCITKHS----------  121 (454)
T ss_pred             CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHH----HHHHHhhcC----------
Confidence            3344666678899999998888777778888888899999998 9999665544444    444344322          


Q ss_pred             ccccccccchhHHHHHHHHHHHHHhccCcchhhhh-hhhcccCCC
Q 022608          123 EQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVA-FGADQFDET  166 (294)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~  166 (294)
                               .++-+++++|++-|+......+..-+ +++|.-.++
T Consensus       122 ---------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr  157 (454)
T KOG4332|consen  122 ---------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKR  157 (454)
T ss_pred             ---------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence                     26677889999999888776655433 455655443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.73  E-value=0.0023  Score=60.64  Aligned_cols=196  Identities=8%  Similarity=-0.005  Sum_probs=125.3

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHH--HHHHHHHhh--cchhHHHH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPL--IGAFVADAY--AGRFWTIT   93 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~G~laDr~--~Grr~~l~   93 (294)
                      +..|+..+.++...+...+.+..+.+..+.+.+..++++..++-...+.......+...  ......-|+  +.+|..++
T Consensus       258 ~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~  337 (488)
T KOG2325|consen  258 KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIIL  337 (488)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeee
Confidence            45778888888899999998888778777787788899888876666555554443332  222222332  13455555


Q ss_pred             HHHHHHHHHHHHHHH-HhhcC----CCC--CCCCC--CccccccccchhHHHHHHHH-HHHHHhccCcchhhhhhhhccc
Q 022608           94 IASIIYQIGMICLTI-SAILP----QLR--PPPCE--GEQVCQEANKGQVAILYVSL-LLAALGSGGIRPCVVAFGADQF  163 (294)
Q Consensus        94 ~~~~~~~i~~i~~~~-~~~~~----~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~  163 (294)
                      .++++......+... ....+    .+.  ...|.  .+.-|++.+......++++. ++.|++.-.+.....++-+|+.
T Consensus       338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiL  417 (488)
T KOG2325|consen  338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKIL  417 (488)
T ss_pred             ehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHh
Confidence            553333332222221 11011    111  12232  34567887777777776664 4557777777788889999999


Q ss_pred             CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHH
Q 022608          164 DETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       164 ~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  219 (294)
                      .+++      .+...+++.....++..++|++...+-...|.++.+.+.....++.
T Consensus       418 gp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  418 GPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV  467 (488)
T ss_pred             CCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence            9985      8888888888888899999988777767777776665555544333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.58  E-value=0.0022  Score=61.01  Aligned_cols=65  Identities=14%  Similarity=0.172  Sum_probs=52.1

Q ss_pred             HhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           36 LAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        36 ~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      ..+-.+...++.|+. ++|+++++.+.++....++.+++.|++|++|||+ -++|.++++.++..+.
T Consensus        25 ~~~g~l~pll~vy~k-QLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~   89 (618)
T KOG3762|consen   25 ARFGSLFPLLAVYFK-QLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVT   89 (618)
T ss_pred             ecccccchHHHHHHH-HcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHH
Confidence            333456677888885 6999999999999999999999999999999999 6666666665554443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.57  E-value=0.19  Score=47.39  Aligned_cols=138  Identities=12%  Similarity=0.014  Sum_probs=104.0

Q ss_pred             hhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 022608           40 GFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPP  119 (294)
Q Consensus        40 ~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~  119 (294)
                      +.-..+..|+..+ |+++...+..-+...+....+.++..++.+|+ |..|+=+++.....++..+...+-..|.-.   
T Consensus       276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~~---  350 (432)
T PF06963_consen  276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGSP---  350 (432)
T ss_pred             cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCCC---
Confidence            3345578888766 99999999999999999999999999999998 999988888877766665555443222100   


Q ss_pred             CCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 022608          120 CEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV  197 (294)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~  197 (294)
                            +   ...+...++.+.++.=+|.=++.-+...++-|..|++      +||...+..+...++..++...++-
T Consensus       351 ------~---~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~------~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  351 ------F---SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPES------ERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             ------c---hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH------HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence                  0   1224555666666666777778888999999999987      5999999988888888887766544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.069  Score=50.58  Aligned_cols=102  Identities=10%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHH
Q 022608           63 TLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLL  142 (294)
Q Consensus        63 ~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (294)
                      -..+......+..++++.+.|+. |.|+.+.++...+.+-.+.....                       +.+.++++-.
T Consensus        55 ~~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-----------------------N~y~~yfssa  110 (461)
T KOG3098|consen   55 GQAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-----------------------NSYYLYFSSA  110 (461)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-----------------------chHHHHHHHH
Confidence            36777788889999999999998 99999999998887766555442                       5677888889


Q ss_pred             HHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 022608          143 LAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVT  194 (294)
Q Consensus       143 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~  194 (294)
                      +.|+|.+..+.-...+.+|...++      ...+-.+........+..+|..
T Consensus       111 llG~Gaallw~GqG~ylt~~st~~------tie~Nisi~Wai~~~~li~Ggi  156 (461)
T KOG3098|consen  111 LLGFGAALLWTGQGGYLTSNSTRE------TIERNISIFWAIGQSSLIIGGI  156 (461)
T ss_pred             HhhhhHHheecccceehhhcCChh------hHHHHHHHHHHHHHHHHHhhhH
Confidence            999999999999999999988776      3555555544444444444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.37  E-value=0.043  Score=54.55  Aligned_cols=76  Identities=17%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHH-HhhhHHHHHHHHHhh-cchhHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGT-GSLTPLIGAFVADAY-AGRFWTITIASII   98 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~laDr~-~Grr~~l~~~~~~   98 (294)
                      .....++...++...+.++.+++|-|+.++++.+...+..+++...+. ..+|.+++|++.-|+ +..|.+..+.++.
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~  470 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC  470 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence            444455778888999999999999999999999999999999776664 457778999999886 2344444444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.21  E-value=0.0012  Score=63.97  Aligned_cols=172  Identities=13%  Similarity=0.152  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Q 022608           25 PFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGG-TGSLTPLIGAFVADAY-AGRFWTITIASIIYQIG  102 (294)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~-~Grr~~l~~~~~~~~i~  102 (294)
                      ....+...++.+...++.+++|.|++.+|++++.+++.+.+...+ +..+|.+++|++..|+ ++.|+.+....+..+++
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~  387 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS  387 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence            334466677788888899999999999999999999999887776 5568889999999987 33445444444443333


Q ss_pred             HHH---HHHH-hhcCCC--CC----------CCCCC----------------ccccccccchhHHHHHHHHHHHHHhccC
Q 022608          103 MIC---LTIS-AILPQL--RP----------PPCEG----------------EQVCQEANKGQVAILYVSLLLAALGSGG  150 (294)
Q Consensus       103 ~i~---~~~~-~~~~~~--~~----------~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~g~g~g~  150 (294)
                      .+.   ..+. -..+.+  .+          ..|..                ...|...=......+.+..++..+..+.
T Consensus       388 ~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~  467 (539)
T PF03137_consen  388 VILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFM  467 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHh
Confidence            332   1111 000000  00          00110                1133333112334444444554555555


Q ss_pred             cchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHhhhheeec
Q 022608          151 IRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM-GAAILVAVTVLVYIQDN  202 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~-~ig~~~~~~~~~~l~~~  202 (294)
                      .........-...++++      |+-+.++..+.. -+|..-||++.|.+.|.
T Consensus       468 ~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  468 SQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -----------------------------------------------------
T ss_pred             cccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            55555666667788874      888888866544 55777889998888774

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.11  E-value=0.18  Score=47.92  Aligned_cols=140  Identities=15%  Similarity=0.033  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcchh-------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchh
Q 022608           61 ANTLTNFGGTGSLTPLIGAFVADAYAGRF-------WTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (294)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr-------~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (294)
                      .+..+.=.+...+.+|+..++--+. +++       .-+-++..++..+.+++...... .           ...++..+
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~-~-----------~~~~~~~s  393 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGIW-F-----------GGPSGLVS  393 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHh-h-----------cCCCCCcC
Confidence            3445555555556666666666664 433       22334555555565555544100 0           00023446


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhee------eccchhh
Q 022608          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ------DNIGWGW  207 (294)
Q Consensus       134 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~------~~~g~~~  207 (294)
                      .+.++...+++++|.=+.+|...++++...|++      -.+..++.+.+....|..++..+.+...      +......
T Consensus       394 ~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~------~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~  467 (498)
T COG3104         394 VWWLVLSYVLQSFGELFISPVGLSMVTKLAPPA------LKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGR  467 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhh
Confidence            778888889999999999999999999999997      5888888888888888887766655311      2223445


Q ss_pred             hhhHhHHHHHHH
Q 022608          208 GLGIPTFAMFLS  219 (294)
Q Consensus       208 ~f~~~~~~~~~~  219 (294)
                      .|+..+...++.
T Consensus       468 ~F~~~g~v~i~~  479 (498)
T COG3104         468 VFGTIGVVAIVI  479 (498)
T ss_pred             hHHHHHHHHHHH
Confidence            565555544333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.87  E-value=0.067  Score=49.78  Aligned_cols=165  Identities=16%  Similarity=0.155  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhHHhhHHHHHHHhhhhcC------C----C------------H-HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022608           27 IFSNEVCEKLAVVGFNTNMISYLTTQLH------M----P------------L-TKAANTLTNFGGTGSLTPLIGAFVAD   83 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~----~------------~-~~~~~~~~~~~~~~~~~~~~~G~laD   83 (294)
                      .++..+++|+.|..+.+-...-+.++.+      .    +            . -..+.+...-.+-..+.-+++-+..+
T Consensus         5 fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~fi~   84 (402)
T PF02487_consen    5 FWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFFIH   84 (402)
T ss_pred             HHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhhhh
Confidence            3466777888877666655555542111      0    0            0 11122333333344444556666778


Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhccc
Q 022608           84 AYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQF  163 (294)
Q Consensus        84 r~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~  163 (294)
                      |+ .-+.-+.+..++..+|+++.+++.                      +.++-+++.++.+++.|..+....++.. .+
T Consensus        85 ~v-~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   85 RV-PYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hc-cchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            76 544444455556777777776654                      5667778888999999998888777644 45


Q ss_pred             CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee-ccchhhhhhHhHHHHHHHHHHHHH
Q 022608          164 DETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD-NIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       164 ~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      ++.          ..+.+..+...++.+|+..-..+.+ ..+.+.++.+...+.++-++.+++
T Consensus       141 ~~~----------~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~  193 (402)
T PF02487_consen  141 GKS----------SLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFF  193 (402)
T ss_pred             Ccc----------ccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            543          1344444555666666654333333 223455666655554444444433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.40  E-value=0.19  Score=47.31  Aligned_cols=128  Identities=11%  Similarity=0.036  Sum_probs=67.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcch-------hHHHHHHHHHHH---HHHHHHHHHhhcCCCCCCCCC
Q 022608           52 QLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGR-------FWTITIASIIYQ---IGMICLTISAILPQLRPPPCE  121 (294)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-------r~~l~~~~~~~~---i~~i~~~~~~~~~~~~~~~~~  121 (294)
                      -.|.+..+......+...+..+|.++||.++|++ -|       .+.=.+.+.+.+   +..+.+....  +        
T Consensus       277 ~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~-~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~--~--------  345 (493)
T KOG1330|consen  277 LIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL-SRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF--T--------  345 (493)
T ss_pred             HhCCccccchhhhhHHHhhchhhheehHHHHHHH-HHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh--h--------
Confidence            3455555566667777888889999999999994 22       121111111111   1111111111  0        


Q ss_pred             CccccccccchhHHHHHHHHHHHHHh-ccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHhhhhe
Q 022608          122 GEQVCQEANKGQVAILYVSLLLAALG-SGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM-GAAILVAVTVLVYI  199 (294)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~g~g-~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~-~ig~~~~~~~~~~l  199 (294)
                           .    .+.+ +....+++|.- .-..++....+..|..|++      +|..++++..... .+|.+-+|.+.|.+
T Consensus       346 -----~----~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~------~Rt~a~a~~~~~~h~fgd~~~p~ivGil  409 (493)
T KOG1330|consen  346 -----S----SSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPS------RRTTAYALDTVFEHIFGDAASPYIVGIL  409 (493)
T ss_pred             -----h----HHHH-HHHHHHHHHHHHHhcccccccceeeEecCcc------cccHHHHHHHHHHHHhccCCCcceehhH
Confidence                 0    0111 11112222221 2223445566778888888      6999998876654 44555556577777


Q ss_pred             eecc-chh
Q 022608          200 QDNI-GWG  206 (294)
Q Consensus       200 ~~~~-g~~  206 (294)
                      .++. ||+
T Consensus       410 sd~l~g~~  417 (493)
T KOG1330|consen  410 SDKLRGYK  417 (493)
T ss_pred             HHHhhCCC
Confidence            6643 555

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=1.2  Score=42.27  Aligned_cols=116  Identities=18%  Similarity=0.136  Sum_probs=68.4

Q ss_pred             HHHHHhhhHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHH
Q 022608           67 FGGTGSLTPLIGAFVADAY--AGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLA  144 (294)
Q Consensus        67 ~~~~~~~~~~~~G~laDr~--~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  144 (294)
                      ...+..++..+.+.+++|.  +||++.+.++..+..++.++..+..  |.-.+.+=-.+++..  ...+.....+.-++.
T Consensus       288 ~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~~~t~~~~~~--~~~~~~~~~ii~~l~  363 (461)
T KOG3098|consen  288 IGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPLRPTDSPPLL--FTPSYYLALIIGFLL  363 (461)
T ss_pred             HhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCCCCCCcccccc--cccchhHHHHHHHHH
Confidence            3334445556666676553  4889999999888888777666543  221110000000000  011344455556778


Q ss_pred             HHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 022608          145 ALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAV  193 (294)
Q Consensus       145 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~  193 (294)
                      |++-+........++++.+|.+       |..+++++-....+++.++.
T Consensus       364 G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  364 GFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999664       66666665555555554443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.84  E-value=1.1  Score=41.55  Aligned_cols=156  Identities=14%  Similarity=0.082  Sum_probs=92.2

Q ss_pred             cCCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHH-----hhcchh
Q 022608           17 QKGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGS--LTPLIGAFVAD-----AYAGRF   89 (294)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~G~laD-----r~~Grr   89 (294)
                      .++..+.+..+++.-..+.+-+ +....+|..++ .-|.|-++.+..    ...+.  -.-+++.++-|     |+ |||
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~f----S~ay~P~sLKllWaPiVDs~y~k~~-Grr   98 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIF----SFAYWPFSLKLLWAPIVDSVYSKRF-GRR   98 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhh----hhhhhHHHHHHHHHhhhHHHHHHhh-ccc
Confidence            3456678888888888887764 45555666665 567887776533    33333  34468889999     76 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChh
Q 022608           90 WTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPK  169 (294)
Q Consensus        90 ~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  169 (294)
                      |.-++=+ -+.+|..+..++...+....         +.....+........++.-+..+.....+-...-.+..++   
T Consensus        99 ksWvvp~-q~llG~~mllLs~~v~~~~g---------~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e---  165 (510)
T KOG3574|consen   99 KSWVVPC-QYLLGLFMLLLSYLVDRGLG---------GNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRE---  165 (510)
T ss_pred             cceeeeh-HHHHHHHHHHHhhCCCcccc---------cCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHh---
Confidence            8765533 34456666666552221110         0011123333333445556666666666666666666655   


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHh
Q 022608          170 QATKTWKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       170 ~~~~rg~~~~~~~~~~~ig~~~~~~~  195 (294)
                         ..|-+......+.+.|-+++..+
T Consensus       166 ---~lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  166 ---NLGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             ---hcCchhHHHHHHHhhhHHhhcce
Confidence               36666666666777777776654

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.61  E-value=4  Score=38.57  Aligned_cols=187  Identities=9%  Similarity=-0.090  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      ..+.+....++.++.-=+...-.+.|+.+.+.-+.--.+.....-.+...+.++.-|.+.||. .|.+++..+.+..-++
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLS   81 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHH
Confidence            345555666666666555666677788776655656666666667777778888889999998 8988877765544322


Q ss_pred             H----HHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHH-HHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608          103 M----ICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLA-ALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus       103 ~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      .    +++......+..           ..........+++...+. .+..=.......+.=-|+...-..+.+..+.+.
T Consensus        82 v~~s~~~~~~l~~~~~~-----------~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~  150 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSS-----------SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARM  150 (432)
T ss_pred             HHHHHHHHHHHHhCCcc-----------ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHH
Confidence            2    222211101110           000011122222222222 111111111222222333221111111245555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      .+..--.=.+--.++|++.|.+.+..+......+.++..+++.+
T Consensus       151 NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~  194 (432)
T PF06963_consen  151 NATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVF  194 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence            55554445567789999999998877877666666665555544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.44  E-value=0.19  Score=47.42  Aligned_cols=130  Identities=5%  Similarity=-0.113  Sum_probs=68.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhH
Q 022608           55 MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQV  134 (294)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (294)
                      +++.-.+.+..+..++..++..+....--+. .-|+++....++.++..+.-.+..  ...+..       -+. +  ..
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~-~~R~~~~~t~~~~~~~~l~~~~lv--~~~n~~-------~Gi-~--d~  318 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNW-SWRRIFVVTTLVSVLASLFDLLLV--TRWNLD-------LGI-P--DQ  318 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcccEEEE--EEEeee-------eCc-C--Ce
Confidence            7777666666555555555555544433333 456666665554443332211110  000000       000 0  11


Q ss_pred             HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeecc
Q 022608          135 AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI  203 (294)
Q Consensus       135 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~  203 (294)
                      +..+..-++..+..+...-+...+.+|+.|+..      -|+.++......|+|..++..++..+.+..
T Consensus       319 ~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~  381 (433)
T PF03092_consen  319 WFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELF  381 (433)
T ss_pred             EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            112222233444444445566778899999984      788888887778888887777766655433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=92.26  E-value=11  Score=36.09  Aligned_cols=72  Identities=10%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHH
Q 022608          142 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFL  218 (294)
Q Consensus       142 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~  218 (294)
                      ++.++.....+..--..+.+.+|+++     .|+..++-++...++.+.+..++.+.+.+..||..+..+..+++++
T Consensus       274 i~y~~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       274 IAYGISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34456666666677778888888765     6899999988888888876666668899999999777666665544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.90  E-value=3.4  Score=38.63  Aligned_cols=61  Identities=11%  Similarity=0.005  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhe
Q 022608          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYI  199 (294)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l  199 (294)
                      +.+.+++..+..|+..|....+....+.|..+++      .|.-.++...++-++|..++.+++-++
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~------~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPE------DREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            5666666777789999999999999999987776      488888888888888887777665443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.41  E-value=12  Score=34.90  Aligned_cols=127  Identities=11%  Similarity=0.073  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc---hhHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAG---RFWTITIASIIY   99 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G---rr~~l~~~~~~~   99 (294)
                      ..+..+......-..+..+.+.-+.|-....+-+.  +......+.....+..++.-.+--+. .   |+++........
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~-~~~~~~~~~~~l~~~~   95 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFL-NTRLRTRVGYLLSLIA   95 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            44444455555556666666555444433333333  44455555555555444444443333 2   222222222222


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCC
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDET  166 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  166 (294)
                      ++..+.+.++....             +....+.....++..++.+++.|..+.......++ +|.+
T Consensus        96 il~i~~l~~~~v~~-------------~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~  148 (406)
T KOG1479|consen   96 ILFIVTLDLALVKT-------------DTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSE  148 (406)
T ss_pred             HHHHHHHHHHhhcc-------------CCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHH
Confidence            22222222221000             11123355566667778888888888887777777 5654

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=89.87  E-value=5.5  Score=36.24  Aligned_cols=114  Identities=14%  Similarity=0.088  Sum_probs=61.4

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      |..+ ++-+.+...+..|.-..++......    +....+  ............++.+.+..++ |-|+++.++...+..
T Consensus        29 knv~-i~s~~fl~~f~a~~gl~nlq~~vn~----~lg~~s--l~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~~Y~l  100 (390)
T KOG3097|consen   29 KNVL-ILSIAFLLTFTAYLGLQNLQTSVNY----DLGTVS--LGALYLSLIDSSMFMPLLIRFL-GTKWTMVLAVFPYAL  100 (390)
T ss_pred             hhhh-HHHHHHHHHHHHHHHHHHHHHHHhc----Ccccch--hhhhhHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence            4433 4445555555555444455444332    222222  1122223334445555666665 999999887655443


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCC
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDET  166 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  166 (294)
                      ..     +.++                  ...+..++.+-+..|+|.+..++.-.+|++++-..+
T Consensus       101 yi-----A~Nl------------------~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y  142 (390)
T KOG3097|consen  101 YI-----AANL------------------EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY  142 (390)
T ss_pred             HH-----Hhhc------------------chhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence            32     2211                  114455666667779999988887777776654443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=89.71  E-value=8.8  Score=38.36  Aligned_cols=184  Identities=11%  Similarity=-0.051  Sum_probs=114.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchh
Q 022608           54 HMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQ  133 (294)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (294)
                      +...........++....++..+.....+|-.-|+-.....-.+.++++.+...+.. +++.             .....
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a~-------------~~~~~   81 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGAI-------------PSSGH   81 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hccC-------------ccccc
Confidence            334445666778888888888888999999885555566666666666666665554 2210             01111


Q ss_pred             HHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccc-hhh-----
Q 022608          134 VAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIG-WGW-----  207 (294)
Q Consensus       134 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~-----  207 (294)
                      .....+..+.+.++.++..++-+.+.+++.+..+   ...+.+..++|++....+.+ |.+++..+..... +..     
T Consensus        82 ~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~  157 (654)
T TIGR00926        82 PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQ  157 (654)
T ss_pred             chHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccC
Confidence            3445567777888888888999999999887763   33355788899988877765 4555555554443 321     


Q ss_pred             -hhhHhHH-HHHHHHHHHHHhccceeccCCCCChhHHHHHHHHHHHHhCc
Q 022608          208 -GLGIPTF-AMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRK  255 (294)
Q Consensus       208 -~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (294)
                       .|..... ..++.++.++.+...++.-++.+.......++.+......+
T Consensus       158 ~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~  207 (654)
T TIGR00926       158 DCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR  207 (654)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH
Confidence             2333333 34444555556555556666666655556666655555544

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=88.70  E-value=0.83  Score=43.10  Aligned_cols=86  Identities=7%  Similarity=-0.127  Sum_probs=54.2

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhh-hcCCCH----------------HHHHHHHHHHHHHHhhhHHHHHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTT-QLHMPL----------------TKAANTLTNFGGTGSLTPLIGAFV   81 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~G~l   81 (294)
                      ..++.++.+....++..++++...-+.+.++-+ .++=|+                ..-.+-..+......+.+....++
T Consensus       276 ~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l  355 (498)
T KOG0637|consen  276 VMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKL  355 (498)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            456788888999999888887776666666533 222211                112334455566677788888999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHH
Q 022608           82 ADAYAGRFWTITIASIIYQIGMIC  105 (294)
Q Consensus        82 aDr~~Grr~~l~~~~~~~~i~~i~  105 (294)
                      .+|+ |-|+.+..+...+.++..+
T Consensus       356 ~~~~-g~r~~y~~~~~~f~~~~~~  378 (498)
T KOG0637|consen  356 SRKF-GTRKRYWGGVNAFGLATGL  378 (498)
T ss_pred             HHhc-CcceEEeehhHHHHHHHHH
Confidence            9998 8555555554434444333

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=88.60  E-value=24  Score=34.00  Aligned_cols=169  Identities=9%  Similarity=0.022  Sum_probs=90.7

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhc---CCCHHHHHHHHHHHHH-HHhhhHHHHHHHHHhhcchhHHHH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQL---HMPLTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTIT   93 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~   93 (294)
                      +..+++++.+.+..++..+.+.     +.--+++.+   ..++.....+-....+ +..+...+-.+++|++ +|.++..
T Consensus        20 ~~E~~k~~~l~~m~f~i~f~y~-----~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy   93 (491)
T PF03219_consen   20 RSELKKFLPLALMFFFILFNYT-----ILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFY   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence            3566777777777666655432     222233322   2234444444433333 4445567789999998 9999888


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC--CCCCC--CCCcccccccc---------chhHHHHHHHHHHHHHhccCcchhhhhhhh
Q 022608           94 IASIIYQIGMICLTISAILPQ--LRPPP--CEGEQVCQEAN---------KGQVAILYVSLLLAALGSGGIRPCVVAFGA  160 (294)
Q Consensus        94 ~~~~~~~i~~i~~~~~~~~~~--~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  160 (294)
                      +....+.....+.++.- +|.  ...+.  +..+.....+.         .+....+++..=+  .|.-...-.-..+..
T Consensus        94 ~~~~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aEl--wgsvvlSlLFW~fAN  170 (491)
T PF03219_consen   94 IIIIPFLGFFALFAFVL-YPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAEL--WGSVVLSLLFWGFAN  170 (491)
T ss_pred             HHHHHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            77666666555555432 232  00000  00000000000         0011112211111  121122234578889


Q ss_pred             cccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee
Q 022608          161 DQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       161 ~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~  201 (294)
                      |.+..+      +..+.++.+..+.|+|..++..+..++.+
T Consensus       171 ~itt~~------eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  171 EITTVE------EAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             hcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888      48889999999999999988877666555

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.13  E-value=12  Score=33.35  Aligned_cols=138  Identities=11%  Similarity=0.078  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCCCCccccccccchhHHHH
Q 022608           61 ANTLTNFGGTGSLTPLIGAFVADAYAGRF--WTITIASIIYQIGMICLTISAI-LPQLRPPPCEGEQVCQEANKGQVAIL  137 (294)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~G~laDr~~Grr--~~l~~~~~~~~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (294)
                      |.+...+++..++|+-+...+..|- ..|  ..+.+..++.++...+..+... .|                ...++..-
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~vsP----------------~kes~~~s  347 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSSVSP----------------SKESPSES  347 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhccCC----------------CcCCchHH
Confidence            5566677777666666666665543 221  3444444444433333322220 11                12234444


Q ss_pred             HHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHH
Q 022608          138 YVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMF  217 (294)
Q Consensus       138 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~  217 (294)
                      .++.+++-...|.++|.+.-+=.+..|++      .|++.+.++-.=.++..-++....-.-....+-+..|.++.++..
T Consensus       348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEe------arstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~  421 (454)
T KOG4332|consen  348 LIGFCLFEACVGLFWPSIMKMRSQYIPEE------ARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLF  421 (454)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHhhCCHH------HHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHH
Confidence            56666777888899999888888888887      588888887765555444332111011112345567777777665


Q ss_pred             HHHH
Q 022608          218 LSII  221 (294)
Q Consensus       218 ~~~~  221 (294)
                      ++.+
T Consensus       422 ~a~i  425 (454)
T KOG4332|consen  422 VASI  425 (454)
T ss_pred             HHHH
Confidence            5543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=87.00  E-value=7.2  Score=36.92  Aligned_cols=57  Identities=11%  Similarity=0.103  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 022608          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTV  195 (294)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~  195 (294)
                      +-+..++..++.|+..|-..+....+..+..+++      +|..+..+...+..+|-.+|..+
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~------e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPH------EREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555677889999988888888888887665      35555555555666666665543

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=86.97  E-value=30  Score=33.25  Aligned_cols=169  Identities=9%  Similarity=-0.015  Sum_probs=99.1

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCC---HHHHHHHHHHHHH-HHhhhHHHHHHHHHhhcchhHHHH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP---LTKAANTLTNFGG-TGSLTPLIGAFVADAYAGRFWTIT   93 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Grr~~l~   93 (294)
                      +..++++..+.+..+|..+.++.     .--+++.+.++   +.....+-....+ ++.+..++-+++.+++ .|.++..
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~-----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~   96 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNL-----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY   96 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence            34667777777777777665442     23344544443   3444445444444 5667778889999998 8999888


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC--CCCCC-CCC------cccc-----ccccchhHHHHHHHHHHHHHhccCcchhhhhhh
Q 022608           94 IASIIYQIGMICLTISAILPQ--LRPPP-CEG------EQVC-----QEANKGQVAILYVSLLLAALGSGGIRPCVVAFG  159 (294)
Q Consensus        94 ~~~~~~~i~~i~~~~~~~~~~--~~~~~-~~~------~~~~-----~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~  159 (294)
                      +-+..+....+++++.- +|.  ...+. ...      +++-     ..-+.+....+++.-=+.|  .-..+-.-..+.
T Consensus        97 ~~~~~F~~fF~LFa~Vi-~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg--slV~S~lFw~fa  173 (509)
T COG3202          97 IILGFFLGFFALFAFVI-YPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG--SLVLSLLFWQFA  173 (509)
T ss_pred             HHHHHHHHHHHHHHHHH-hccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence            87777777777776654 221  11100 000      0000     0001122233333222221  112223557788


Q ss_pred             hcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee
Q 022608          160 ADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       160 ~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~  201 (294)
                      .|++..+      +..|++..++...|++..++..+..++..
T Consensus       174 Neitt~~------eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         174 NEITTIE------EAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHhhhHH------HhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8988887      48899999999999999998888777655

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=84.65  E-value=37  Score=32.18  Aligned_cols=33  Identities=12%  Similarity=0.184  Sum_probs=24.5

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCC
Q 022608          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDET  166 (294)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  166 (294)
                      ..+..++..++.|++.+..++...++.+ .+|++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~  137 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST  137 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence            4556666677889999998888888777 46754

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=83.23  E-value=16  Score=26.97  Aligned_cols=45  Identities=16%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 022608           59 KAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMI  104 (294)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i  104 (294)
                      ..+.......++..+++.+.|++.|.. |.+..+.+...+..++.+
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  132 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFI  132 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHH
Confidence            344555666777788888999999987 877776665555444433

>TIGR00806 rfc RFC reduced folate carrier

Probab=81.27  E-value=23  Score=34.14  Aligned_cols=93  Identities=16%  Similarity=0.082  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHH
Q 022608           62 NTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL  141 (294)
Q Consensus        62 ~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (294)
                      ..-.+..+.+.+..+..|++-.++ .+.--+.++..-.+-+. ++.++.                   ...+.|..+++-
T Consensus       302 ~veA~~tllga~~a~~ag~~~~~w-~~~~~l~l~v~s~~~~g-ll~~m~-------------------~t~~Iw~~Y~~y  360 (511)
T TIGR00806       302 AVDAASTLLGAITSFIAGFVNIRW-ARWSKLLIAVVSAIQAG-LVFWMS-------------------QSHDIWVLYVTY  360 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHHHHHHH-Hhhhhh-------------------cccchHHHHHHH
Confidence            344555666777888888886664 44333333322222222 222222                   123888888988


Q ss_pred             HHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          142 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       142 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      ++.+.......+....-++.....+      ..|..+|+-
T Consensus       361 vlf~~~y~flitia~~~iA~~L~~~------~~aLvFGiN  394 (511)
T TIGR00806       361 VLFRGIYQFLVPIATFQIASSLSKE------LCALVFGIN  394 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc------ceEEEEecH
Confidence            8888888887787777777776665      467777653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-11

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 92/218 (42%), Gaps = 30/218 (13%)
Query: 24  MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTK------AANTLTNFGGTGSLTPLI 77
           +P+I ++E CE+ +  G    +  +L T L + + +      A +   +F       PL+
Sbjct: 14  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73
Query: 78  GAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL 137
           G ++AD + G++ TI   S+IY +G   L I                  + + +G     
Sbjct: 74  GGWIADRFFGKYNTILWLSLIYCVGHAFLAI-----------------FEHSVQG----F 112
Query: 138 YVXXXXXXXXXXXIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV 197
           Y            I+P V +F  DQFD+++   A K    F+ +YF +      A   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA---FDMFYFTINFGSFFASLSMP 169
Query: 198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDP 235
            +  N G     GIP   MF++ + F +G   Y ++ P
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
2xut_A	524	Proton/peptide symporter family protein; transport	2e-74
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	2e-16

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  236 bits (603), Expect = 2e-74
 Identities = 66/274 (24%), Positives = 109/274 (39%), Gaps = 31/274 (11%)

Query: 24  MPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLI 77
           +P+I ++E CE+ +  G    +  +L T L       +    A +   +F       PL+
Sbjct: 14  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLL 73

Query: 78  GAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAIL 137
           G ++AD + G++ TI   S+IY +G   L I                         V   
Sbjct: 74  GGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE---------------------HSVQGF 112

Query: 138 YVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLV 197
           Y  L L ALGSGGI+P V +F  DQFD+++   A    K F+ +YF +      A   + 
Sbjct: 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFASLSMP 169

Query: 198 YIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLT 257
            +  N G     GIP   MF++ + F +G   Y ++ P        L V  +A    K+ 
Sbjct: 170 LLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT-KVE 228

Query: 258 MVTDPKLLYENEELDAAISLGGKLLHTKHMNFIV 291
              +  L+       +A      +     +  + 
Sbjct: 229 GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLC 262

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 44/238 (18%), Positives = 89/238 (37%), Gaps = 33/238 (13%)

Query: 27  IFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFV 81
           +F  E+ E+ +  G    ++ Y+        LH+    AA+ +  +     L+  IG FV
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 82  ADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSL 141
           AD   G    +    ++  +G I L +                          + L+ S+
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVLALP----------------------FGASALFGSI 115

Query: 142 LLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD 201
           +L  +G+G ++P V       +DE D ++       F+ + F +     +A  ++   Q+
Sbjct: 116 ILIIIGTGFLKPNVSTLVGTLYDEHDRRRDA----GFSIFVFGINLGAFIAPLIVGAAQE 171

Query: 202 NIGWGWGLGIPTFAMFLSIIAFLIGYPLYRNLDPAGSPFTRLLQVCVAAFRKRKLTMV 259
             G+     +    MF+ ++ +  G    + LDP     T  L          K+++ 
Sbjct: 172 AAGYHVAFSLAAIGMFIGLLVYYFGGK--KTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.85
2xut_A	524	Proton/peptide symporter family protein; transport	99.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.81
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.77
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.7
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.59
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.59
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.57
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.47
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.34
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.33
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.29
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.05
2xut_A	524	Proton/peptide symporter family protein; transport	98.45

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.85  E-value=2.4e-20  Score=175.06  Aligned_cols=184  Identities=21%  Similarity=0.397  Sum_probs=162.4

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhh-----cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHh-hcchhHH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADA-YAGRFWT   91 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~   91 (294)
                      +++++.++.+....++..+.+|++..+++.|+++.     +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            45667888888999999999999999999999988     99999999999999999999999999999999 7 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 022608           92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA  171 (294)
Q Consensus        92 l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  171 (294)
                      +.++.++..++.+++.++.                      +.+.++++|++.|+|.+...+...++++|++|+++.   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~---  142 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR---  142 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT---
T ss_pred             HHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc---
Confidence            9999999999988877654                      677888999999999999999999999999998742   


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       172 ~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                       +|+..+++++...++|..++|.+++++.+..||++.|++.++..+++++.+++..+
T Consensus       143 -~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          143 -RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence             37888999999999999999999999998899999999987777666655554433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.82  E-value=2.9e-19  Score=169.23  Aligned_cols=188  Identities=31%  Similarity=0.546  Sum_probs=155.5

Q ss_pred             CCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcC------CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHH
Q 022608           19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTI   92 (294)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l   92 (294)
                      .+++.++.+.+..++.++.+|++..+++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A            9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            345567778889999999999999999999999999      99999999999999999999999999999955999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhh
Q 022608           93 TIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQAT  172 (294)
Q Consensus        93 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  172 (294)
                      .++.++..++.+++.++.                     .+.+.++++|++.|++.+...+...++++|++|+++   +.
T Consensus        89 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~  144 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KS  144 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TT
T ss_pred             HHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hH
Confidence            999998888887776542                     156778889999999999999999999999999884   11


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhccce
Q 022608          173 KTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY  230 (294)
Q Consensus       173 ~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  230 (294)
                      ++...+++++...++|..++|.+++++.+..||++.|++.++..++..+.+++..++.
T Consensus       145 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  202 (524)
T 2xut_A          145 LAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRY  202 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            1244555689999999999999999998888999999988877666655555444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.81  E-value=2e-18  Score=159.19  Aligned_cols=180  Identities=13%  Similarity=0.044  Sum_probs=145.8

Q ss_pred             CCCcchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHH
Q 022608           18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASI   97 (294)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~   97 (294)
                      ++.++.++.+....++..+........ .+++++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDIL-LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            344555555556666666665554444 4556788999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      +..++.+++.....                   ..+.+.++++|++.|++.+...+...++++|.+|++      +|++.
T Consensus       100 ~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~  154 (438)
T 3o7q_A          100 LYALGAALFWPAAE-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFR  154 (438)
T ss_dssp             HHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHH
T ss_pred             HHHHHHHHHHhccc-------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHH
Confidence            99999888843220                   117888999999999999999999999999999998      59999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhee-eccc-------------------------hhhhhhHhHHHHHHHHHHHH
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQ-DNIG-------------------------WGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~  224 (294)
                      +++++...++|..+++.+++++. +..+                         |++.|++.++...+..+.++
T Consensus       155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          155 LNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998887 5444                         89888776665544444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.77  E-value=3.7e-18  Score=157.85  Aligned_cols=175  Identities=13%  Similarity=0.069  Sum_probs=146.8

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      |+.++.+....++..+..+.+...++.+ .+++ .+..+.+++.+...++..++.+++|+++||+ |||++++++.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            4455555556666666655555555544 4567 9999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHH----HhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 022608          101 IGMICLTI----SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK  176 (294)
Q Consensus       101 i~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~  176 (294)
                      ++.+++.+    +.                      +.+.++++|++.|++.+...+...++++|.+|++      +|++
T Consensus       104 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~  155 (451)
T 1pw4_A          104 AVMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGG  155 (451)
T ss_dssp             HHHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHH
T ss_pred             HHHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhH
Confidence            99988887    55                      6678889999999999999999999999999987      6999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHHHHHHHHh
Q 022608          177 YFNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       177 ~~~~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~  226 (294)
                      .+++++...++|..++|.+++++.+..| |++.|++.+++.++..++.++.
T Consensus       156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~  206 (451)
T 1pw4_A          156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM  206 (451)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998888888 9999998887766555444333

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.70  E-value=5.7e-17  Score=146.84  Aligned_cols=166  Identities=10%  Similarity=0.079  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 022608           26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC  105 (294)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~  105 (294)
                      .+....++..+........++.+ .+++|.+..+.+++.+...++..++.++.|+++||+ |||++++.+.++..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence            34455566666666666666554 568999999999999999999999999999999998 9999999999999999988


Q ss_pred             HHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 022608          106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM  185 (294)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~  185 (294)
                      .....                      +.+.+++.|++.|++.+...+...+++.|.+|++      +|++.++.++...
T Consensus        82 ~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  133 (375)
T 2gfp_A           82 AVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGI  133 (375)
T ss_dssp             HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHH
T ss_pred             HHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHH
Confidence            88776                      7888999999999999999999999999999987      5999999999999


Q ss_pred             HHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHH
Q 022608          186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII  221 (294)
Q Consensus       186 ~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~  221 (294)
                      ++|..++|.+++++.+..||++.|++.++..++..+
T Consensus       134 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          134 LVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999999999999999888999999877766555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.59  E-value=2.9e-14  Score=131.57  Aligned_cols=178  Identities=14%  Similarity=0.129  Sum_probs=145.8

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc-chhHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTITIASIIYQ  100 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~l~~~~~~~~  100 (294)
                      +.++.+.+..++..+.++++..+++.|+++.+|++..+++.+.....++..++.++.|+++||+. |||+.+..+..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            56677777888888888899999999999889999999999999999999999999999999932 78888877766655


Q ss_pred             -HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          101 -IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       101 -i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                       ++.+++....                    ..+.+.+.+..++.|++.+...+....++.|.+|++      .|++.++
T Consensus       332 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~  385 (451)
T 1pw4_A          332 TIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAG  385 (451)
T ss_dssp             HHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHH
T ss_pred             HHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHHH
Confidence             4444333221                    114556667777888888888888889999999987      6999999


Q ss_pred             HHHHHHHH-HHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          180 WYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       180 ~~~~~~~i-g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                      +++...++ |..++|.+.+++.+..||+..|++.+++.+++.+..+.
T Consensus       386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 99999999999999999999988887777666555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.59  E-value=2.4e-14  Score=134.05  Aligned_cols=149  Identities=13%  Similarity=0.131  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHH
Q 022608           57 LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAI  136 (294)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (294)
                      ....+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+++++...........    ..-......+.+.
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~----~~~~~~~a~~~~~  128 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD----NTVPVYLAGYVPE  128 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS----SSCCGGGGGCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch----hHHHHHHhhhHHH
Confidence            34567888899999999999999999998 999999999999999998887532100000000    0000001237889


Q ss_pred             HHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeec--------cchhhh
Q 022608          137 LYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN--------IGWGWG  208 (294)
Q Consensus       137 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~--------~g~~~~  208 (294)
                      ++++|++.|+|.|+..+..+.+++|..|++      +|++..+.++.+..+|..+++.+...+...        .+|+..
T Consensus       129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4gc0_A          129 FVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYM  202 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHH
Confidence            999999999999999999999999999998      699999999999999999888776554322        245555


Q ss_pred             hhHhHHHH
Q 022608          209 LGIPTFAM  216 (294)
Q Consensus       209 f~~~~~~~  216 (294)
                      +.+..+..
T Consensus       203 ~~~~~~~~  210 (491)
T 4gc0_A          203 FASECIPA  210 (491)
T ss_dssp             HHTTHHHH
T ss_pred             hhhhhhhh
Confidence            55444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.57  E-value=9.4e-14  Score=127.82  Aligned_cols=167  Identities=13%  Similarity=0.084  Sum_probs=133.5

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHH-hhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISY-LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY   99 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~   99 (294)
                      .+.++...+..++.....+.+..+++.| +++.+|++..+++.+.....++..++.+++|+++||+ |||+++..+.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            3556666667777777788888999999 8888899999999999999999999999999999998 9999999998888


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 022608          100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN  179 (294)
Q Consensus       100 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~  179 (294)
                      .++.+++....                      +.+. .+..++.|++.+...+...++..|.+|++       ++...+
T Consensus       336 ~~~~~~~~~~~----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  385 (438)
T 3o7q_A          336 MALCLISAFAG----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS  385 (438)
T ss_dssp             HHHHHHHHHCC----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred             HHHHHHHHHcC----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence            77776665543                      3333 33346778889999999999999999864       555555


Q ss_pred             HHHHHHHHHHHHHHHhhhheeeccc-hhhhhhHhHHHHHHH
Q 022608          180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLS  219 (294)
Q Consensus       180 ~~~~~~~ig~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~  219 (294)
                      +.. ...+|+.++|.+.+++.+..| ++..|.+.+++.++.
T Consensus       386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            555 567999999999999999888 888888765544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.47  E-value=3.2e-13  Score=124.58  Aligned_cols=173  Identities=9%  Similarity=0.049  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCC---HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           24 MPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMP---LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .+......++....++....+++.|+++.++..   ....+....+..++..++.++.|+++||+ |||+++..+.++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence            333333334444444555566888887665532   34456666666677788899999999998 99999988887776


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++.+.+.+..                      +.+.+.+..++.+++.+...+....+++|.+|++      .|++..++
T Consensus       301 ~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~  352 (417)
T 2cfq_A          301 VRIIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLV  352 (417)
T ss_dssp             HHHHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHH
T ss_pred             HHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHH
Confidence            6654443322                      3445555556667766666666788999999987      69998888


Q ss_pred             -HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 022608          181 -YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI  225 (294)
Q Consensus       181 -~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  225 (294)
                       ++....+|+.++|.+.|++.+..|++..|.+.+++.+++.++.+.
T Consensus       353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence             577888999999999999888888888888777766666555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.34  E-value=3.9e-11  Score=112.06  Aligned_cols=183  Identities=14%  Similarity=0.066  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG  102 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~  102 (294)
                      ..........+..+..+....+..+++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~  355 (491)
T 4gc0_A          277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG  355 (491)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence            333334444444443333334444555567788888888888888888999999999999998 9999999998888877


Q ss_pred             HHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 022608          103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY  182 (294)
Q Consensus       103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~  182 (294)
                      .+.+.......                ...............+++.+ ..+....+.+|.+|++      .|+++.++.+
T Consensus       356 ~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~------~R~~~~g~~~  412 (491)
T 4gc0_A          356 MFSLGTAFYTQ----------------APGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNA------IRGKALAIAV  412 (491)
T ss_dssp             HHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTT------THHHHHHHHH
T ss_pred             HHHHHHHHhcc----------------cchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHh------HHHHHHHHHH
Confidence            76665443111                11112222222222333333 3456678999999999      5999999999


Q ss_pred             HHHHHHHHHHHHhhhheeec------cchhhhhhHhHHHHHHHHHHHHHhccc
Q 022608          183 FVMGAAILVAVTVLVYIQDN------IGWGWGLGIPTFAMFLSIIAFLIGYPL  229 (294)
Q Consensus       183 ~~~~ig~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~~  229 (294)
                      ....+|+.+++.+.+.+.+.      .++...|++.+++.+++.++.++..|+
T Consensus       413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE  465 (491)
T 4gc0_A          413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE  465 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence            99999999988887765432      344556777666666666655555543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.33  E-value=5.9e-12  Score=117.77  Aligned_cols=185  Identities=9%  Similarity=-0.026  Sum_probs=132.6

Q ss_pred             hHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHH-----HHHH
Q 022608           23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-----IASI   97 (294)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~-----~~~~   97 (294)
                      ..+.+....++....+......++.|+++.++.+..+.+.+.....+...++.++.|+++||+ |||+...     .+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            344455555666666677778889999888888877777788888888889999999999998 9886544     6666


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 022608           98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY  177 (294)
Q Consensus        98 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~  177 (294)
                      +..++.+++........             .....+.+.+.+..++.|++.+...+....++.|.+|++      .|++.
T Consensus       363 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~  423 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQM  423 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSS
T ss_pred             HHHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHH
Confidence            66666655544321100             001124455667778889999998999999999999998      49999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 022608          178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP  228 (294)
Q Consensus       178 ~~~~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  228 (294)
                      .++++...++|..+++.+.+++.+. ++...|.+.+++.++..++.+...+
T Consensus       424 ~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          424 MSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998887654 5666677666666555555554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.29  E-value=1.7e-13  Score=126.36  Aligned_cols=170  Identities=6%  Similarity=-0.082  Sum_probs=111.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      |..+.+....++..+.+..+.++++.|+++++|++..+.+++.+...++..++++++|+++||+ |||++++++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            3455555555666666666778899999988999999999999999999999999999999998 999999988876654


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhH-HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQV-AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +..........+                   .. ..+..++++.+++.+...+...+...+..++.    .++++..++.
T Consensus        86 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~  142 (417)
T 2cfq_A           86 MFAPFFIFIFGP-------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGR  142 (417)
T ss_dssp             CHHHHHHHTHHH-------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHH
T ss_pred             HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHH
Confidence            322111100000                   00 00122333333433333333333333333221    1135666777


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHH
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM  216 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~  216 (294)
                      .+...++|..++|.+++++.+ .+|+..|++.++..
T Consensus       143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            766778899999999888765 57888888766543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.05  E-value=4.6e-11  Score=107.81  Aligned_cols=163  Identities=9%  Similarity=-0.025  Sum_probs=122.2

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHH-HH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII-YQ  100 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~-~~  100 (294)
                      +.++......++.....+.+..+++.|+++.+|++..+++.+.....++..++.++.++++||+ |++  +..+..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4556666777777788888888889999888999999999999999999999999999999998 772  2333322 22


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      ++........ .                 ...+.+.+.+..++.|++.+...+....+..|.+| +      +|++..+.
T Consensus       276 ~~~~~~~~~~-~-----------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~  330 (375)
T 2gfp_A          276 AGLLMWIPDW-F-----------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGAL  330 (375)
T ss_dssp             TSSSSSHHHH-H-----------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHH
T ss_pred             HHHHHHHHhh-h-----------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHH
Confidence            2222111110 0                 01145556667778899999999999999999998 4      59999999


Q ss_pred             HHHHHHHHHHHHHHhhhheeeccchhhhhhHh
Q 022608          181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIP  212 (294)
Q Consensus       181 ~~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~  212 (294)
                      ++...++|+.+++.+.+.+.+..++...+.+.
T Consensus       331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            99999999999999988887766777666553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.45  E-value=4.3e-08  Score=92.25  Aligned_cols=88  Identities=10%  Similarity=0.069  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheeecc--ch-----
Q 022608          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDNI--GW-----  205 (294)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~~~--g~-----  205 (294)
                      +.+.+.+..++.|++.+...+....++.|.+|++      .||+.+++++...++|+.++|.+.+.+.+..  +|     
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~  477 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA------MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG  477 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            4455666778889999999999999999999988      5999999999999999999999999887642  23     


Q ss_pred             ----hhhhhHhHHHHHHHHHHHHHh
Q 022608          206 ----GWGLGIPTFAMFLSIIAFLIG  226 (294)
Q Consensus       206 ----~~~f~~~~~~~~~~~~~~~~~  226 (294)
                          +..|++.+++.+++.+++++.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~  502 (524)
T 2xut_A          478 MSVTAFQMFFFAGFAILAAIVFALY  502 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHH
Confidence                222555555555554444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.74
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.52
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.51
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.44

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=9.6e-18  Score=152.00  Aligned_cols=160  Identities=12%  Similarity=0.077  Sum_probs=132.6

Q ss_pred             HHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 022608           42 NTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCE  121 (294)
Q Consensus        42 ~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~  121 (294)
                      .+...++++ ++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.+++......         
T Consensus        44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~---------  112 (447)
T d1pw4a_          44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA---------  112 (447)
T ss_dssp             HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHH---------
T ss_pred             HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchh---------
Confidence            345556776 5899999999999999999999999999999998 99999999999998888877764311         


Q ss_pred             CccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhhhheee
Q 022608          122 GEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQD  201 (294)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~ig~~~~~~~~~~l~~  201 (294)
                               ..+.+.+++.|++.|++.+...+....+++|.+|++      +|++.+++++.+.++|..+++.+.+.+..
T Consensus       113 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_         113 ---------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             ---------HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             ---------hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhh
Confidence                     115677889999999999999999999999999988      69999999999999999999988776655


Q ss_pred             c-cchhhhhhHhHHHHHHHHHHHHHhc
Q 022608          202 N-IGWGWGLGIPTFAMFLSIIAFLIGY  227 (294)
Q Consensus       202 ~-~g~~~~f~~~~~~~~~~~~~~~~~~  227 (294)
                      . .+|++.|++.++..++..++.+...
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~  204 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMM  204 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhc
Confidence            4 4789888887776655544444433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=7.4e-14  Score=123.20  Aligned_cols=174  Identities=6%  Similarity=-0.102  Sum_probs=114.5

Q ss_pred             chHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 022608           22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI  101 (294)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i  101 (294)
                      |+.|.+....++..+.+....+.++.|+++++|+|..+.+++.++..++..+++++.|+++||+ |||++++++..+..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4567777777777777777778899999999999999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH
Q 022608          102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY  181 (294)
Q Consensus       102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~  181 (294)
                      +.++.......+                  .......+.+.+.+.+.+...........+..+++    ..++....+..
T Consensus        86 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  143 (417)
T d1pv7a_          86 MFAPFFIFIFGP------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGRA  143 (417)
T ss_dssp             THHHHHHHTHHH------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----HHHHSCCHHHH
T ss_pred             HHHHHHHhhhhh------------------hHHHHHHHHHHHhhhcccccccchhhcccccccch----hhhhHHHHHHH
Confidence            777776654100                  01111223333333333333333222222222221    11345555666


Q ss_pred             HHHHHHHHHHHHHhhhheeeccchhhhhhHhHHHHHHH
Q 022608          182 YFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLS  219 (294)
Q Consensus       182 ~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~  219 (294)
                      ......+..+++.+++.+.+. +|+..+........+.
T Consensus       144 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~  180 (417)
T d1pv7a_         144 RMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALIL  180 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred             hhhhccccccccccccccccc-cccccccchhhHHHHH
Confidence            667777888888888777654 3444444444433333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.1e-13  Score=122.87  Aligned_cols=180  Identities=13%  Similarity=0.085  Sum_probs=137.1

Q ss_pred             cchHHHHHHHHHHHHHhHHhhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHH
Q 022608           21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ  100 (294)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~  100 (294)
                      .+.++.+....++.....++...+++.|+++.++++..+.+.......+...++.+++|+++||+ +|++..........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            35666677777888888888999999999999999999999999999999999999999999998 87654444433333


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCccccccccchhHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 022608          101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW  180 (294)
Q Consensus       101 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~  180 (294)
                      +..+........                 ...+.+...+..++.|++.++..+....+..|.+|++      .|+++.++
T Consensus       327 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~  383 (447)
T d1pw4a_         327 LVTIATIVYWMN-----------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGF  383 (447)
T ss_dssp             HHHHHHHHTTSC-----------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHHH
T ss_pred             HHHHHHHHHHhc-----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHH
Confidence            222222221101                 1225566667777788888888888899999999987      69999999


Q ss_pred             HHHHHHHH-HHHHHHhhhheeeccchhhhhhHhHHHHHHHHHHHH
Q 022608          181 YYFVMGAA-ILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFL  224 (294)
Q Consensus       181 ~~~~~~ig-~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  224 (294)
                      .+...+++ ..++|.+.+++.+.+||+..|++.+++.+++.++..
T Consensus       384 ~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         384 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            88887774 566899999999999999888877666555544333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=1.1e-13  Score=122.01  Aligned_cols=145  Identities=8%  Similarity=0.005  Sum_probs=119.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccccccccch
Q 022608           53 LHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKG  132 (294)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (294)
                      .+.+....+.......++..++.++.+++.||+ |+++++.++.++..++.+.+....                      
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------  310 (417)
T d1pv7a_         254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT----------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC----------------------
T ss_pred             cccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc----------------------
Confidence            344556667777788888889999999999998 999999999888888877766544                      


Q ss_pred             hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHH-HHHHHHHHHHHHHhhhheeeccchhhhhhH
Q 022608          133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWY-YFVMGAAILVAVTVLVYIQDNIGWGWGLGI  211 (294)
Q Consensus       133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~-~~~~~ig~~~~~~~~~~l~~~~g~~~~f~~  211 (294)
                      +.+.+++..++.|++.+...+....++.|.+|++      .|++..+.. +....+|..++|.+.|++.+.+|++..|++
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~  384 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            6677777888889999999999999999999998      599999875 456779999999999999999999999988


Q ss_pred             hHHHHHHHHHHHHHh
Q 022608          212 PTFAMFLSIIAFLIG  226 (294)
Q Consensus       212 ~~~~~~~~~~~~~~~  226 (294)
                      .+++.++..++..+.
T Consensus       385 ~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         385 LGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            877766665554443