Citrus Sinensis ID: 022618

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MEKSGLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSVSEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN
Secondary Structure (PSIPRED)
cccccccHHHHHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccEEEEEEcccEEccEEcccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccccEEEEEEcccccEEEcccccHHHHHHHccccEEEcccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHccccccccccccccccccEEEEEEccccccEEEEcHHHHccHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHccccccEccEEcccccEEEEccccHHHHHHHHHHHHEEcccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
meksglnlkatelrlglpgsespergsdkngnAAVILSLKSFvgsgakrvfcdatdadakwVFSVSEAAagrlfsprgggssnnnnnnhgkvhvgsdsglggpvledgngacvaaqspkpvmmvqdkksheiapskaqvvgwppirsyrkntmssqsskndddseaklGLGCLYVKvsmdgapylrkvdLKTYSSYIDLSSALEKMFSCFtivsgqcsshnvpsrdglsesrlmdllhGSEYvltyedkdgdwmlvgdvpwemftDSCRRLRIMKssdaiglapramekcknrn
Flexible Loop (DISEMBL)
meksglnlkatelrlglpgsespergsdknGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSVSEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKsheiapskaqvvgwppirsyrkntmssqsskndddseAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSsdaiglapramekcknrn
Low Complexity Region (SEG)
MEKSGLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSVSEAAAGRLFSPRgggssnnnnnnHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN
Disordered region (IsUnstruct)
********************************AAVILSLKSFVGSGAKRVFCDATDADAKWVFSVSEAA**************************************************************************************************LGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCS*************RLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMK*******************
Disordered Region (DISOPRED)
***SGLNLKATELRLGLP***********************************************************************************************************************************************************YVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVS*************************SEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIM********************
Disordered Region (DISEMBL)
MEKSGLNLKATELRLGLP***********NGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSVSEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAPSKAQVVGWPPIRSYRK***************AKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQ***********LSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN
Disordered Region (DISPRO)
****GLNLKATELRLGLPG*****************************************************************************************************************APSKAQVVGWPPIRSYRKNTMSSQ*************LGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSS*****RDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAME******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKSGLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSVSEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9ZSY8	305	Auxin-responsive protein	yes	no	0.880	0.849	0.593	2e-82
Q38826	321	Auxin-responsive protein	no	no	0.887	0.813	0.518	3e-71
Q38827	338	Auxin-responsive protein	no	no	0.857	0.745	0.457	2e-62
Q5Z749	266	Auxin-responsive protein	yes	no	0.523	0.578	0.725	1e-58
P0C132	277	Auxin-responsive protein	no	no	0.523	0.555	0.666	4e-58
Q38832	228	Auxin-responsive protein	no	no	0.772	0.995	0.465	1e-55
Q6AT33	281	Auxin-responsive protein	no	no	0.510	0.533	0.644	5e-55
Q75GB1	257	Auxin-responsive protein	no	no	0.476	0.544	0.700	5e-55
O24407	236	Auxin-responsive protein	no	no	0.727	0.906	0.512	2e-54
Q38825	243	Auxin-responsive protein	no	no	0.778	0.942	0.466	5e-53

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 178/300 (59%), Positives = 203/300 (67%), Gaps = 41/300 (13%)

Query: 5   GLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFS 64
           GLN KATELRLGLPGSESPER   +     + L+  S   SGAKRVF DA +   KWVFS
Sbjct: 37  GLNFKATELRLGLPGSESPERVDSR----FLALNKSSCPVSGAKRVFSDAINDSNKWVFS 92

Query: 65  V-SEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMM 123
             S  A G                      VGS SG    V++DG          KP + 
Sbjct: 93  PGSTTATG---------------------DVGSGSGPRTSVVKDGKSTTFT----KPAVP 127

Query: 124 VQDKKSHEIAP-SKAQVVGWPPIRSYRKNTM-SSQSSK-----NDDDSEAKLG--LGCLY 174
           V++KKS   AP SKAQVVGWPPIRS+RKN+M SSQS K       +++EAK G    CLY
Sbjct: 128 VKEKKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLY 187

Query: 175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLM 234
           VKVSM+GAPYLRK+DLKTY SY++LSSALEKMFSCFTI  GQ  SH    RDGL+ESRL 
Sbjct: 188 VKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTI--GQFGSHGGCGRDGLNESRLT 245

Query: 235 DLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
           DLL GSEYV+TYEDKD DWMLVGDVPWEMF  SC++LRIMKSS+AIGLAPR MEKC++RN
Sbjct: 246 DLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  268 bits (685), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/305 (51%), Positives = 197/305 (64%), Gaps = 44/305 (14%)

Query: 3   KSGLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWV 62
           KS LN KATELRLGLP S+SPER +D       +LS ++                D K +
Sbjct: 44  KSNLNFKATELRLGLPESQSPERETDFG-----LLSPRT---------------PDEKLL 83

Query: 63  FSVSEAAAGRLFSPRGGGSSNNNNNN--HGKVHVGSD-----SGLGGPVLEDGNGACVAA 115
           F         L   +  GS+   + N   G     +D     SG+ G V   G    + +
Sbjct: 84  FP--------LLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSVRPGGGINMMLS 135

Query: 116 QSPKPVMM-VQDKKSHEI-----APS-KAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKL 168
              K V   +Q+++SH       AP+ KAQVVGWPPIRSYRKNTM+S +SKN D+ + K 
Sbjct: 136 PKVKDVSKSIQEERSHAKGGLNNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKP 195

Query: 169 GLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGL 228
           GLG L+VKVSMDGAPYLRKVDL+TY+SY  LSSALEKMFSCFT+  GQC  H    R+ +
Sbjct: 196 GLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTL--GQCGLHGAQGRERM 253

Query: 229 SESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAME 288
           SE +L DLLHGSE+VLTYEDKDGDWMLVGDVPWE+FT++C++L+IMK SD+IGLAP A+E
Sbjct: 254 SEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVE 313

Query: 289 KCKNR 293
           K KN+
Sbjct: 314 KSKNK 318

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 147/321 (45%), Positives = 188/321 (58%), Gaps = 69/321 (21%)

Query: 2   EKSGLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFV-----------------G 44
           +K+ ++LKATEL LGLPGS+SP R ++ N  +   L  K F                   
Sbjct: 57  DKATISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNA 116

Query: 45  SGAKRVFCDATD--ADAK--------WVFSVSEAAAGRLFSPRGGGSSNNNNNNHGKVHV 94
           SG KR F D  D  A+AK        W+F   EAAA +  + +                 
Sbjct: 117 SGNKRGFSDTMDQFAEAKSSVYTEKNWMFP--EAAATQSVTKKD---------------- 158

Query: 95  GSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAPSKAQVVGWPPIRSYRKNTMS 154
                             V    PK      +  S   A +KAQ+VGWPP+RSYRKNT++
Sbjct: 159 ------------------VPQNIPKGQSSTTNNSSSPPA-AKAQIVGWPPVRSYRKNTLA 199

Query: 155 SQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVS 214
           + + KN D+ + + G G L+VKVSMDGAPYLRKVDL++Y++Y +LSSALEKMF+ FT+  
Sbjct: 200 T-TCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTL-- 256

Query: 215 GQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIM 274
           GQC S+    +D LSE++L DLL+G +YVLTYEDKDGDWMLVGDVPWEMF D C++L+IM
Sbjct: 257 GQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIM 316

Query: 275 KSSDAIGL--APRAMEKCKNR 293
           K  DAIGL  APRAMEK K R
Sbjct: 317 KGCDAIGLAAAPRAMEKSKMR 337

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z749|IAA21_ORYSJ Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1

 Score =  227 bits (578), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 116/160 (72%), Positives = 126/160 (78%), Gaps = 6/160 (3%)

Query: 139 VVGWPPIRSYRKNTM--SSQSSKNDDDSEAKLGL--GCLYVKVSMDGAPYLRKVDLKTYS 194
           VVGWPPIRSYRKNTM  S  + K  DD EAK     GCLYVKVSMDGAPYLRKVDLK Y 
Sbjct: 109 VVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYK 168

Query: 195 SYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254
           +Y +LS ALEKMFSCFT+  G   S+    RDGLS+ RLMDL +G+E VLTYEDKD DWM
Sbjct: 169 NYKELSLALEKMFSCFTV--GHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWM 226

Query: 255 LVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
           LVGDVPW MFTDSCRRLRIMK SDA+GLAPRA +K KNRN
Sbjct: 227 LVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNRN 266

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  225 bits (573), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 129/165 (78%), Gaps = 11/165 (6%)

Query: 136 KAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCL------YVKVSMDGAPYLRKVD 189
           KAQVVGWPP+RSYRKN ++ Q+ K  D ++              +VKVSMDGAPYLRKVD
Sbjct: 118 KAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVD 177

Query: 190 LKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDK 249
           LK Y SY++LS ALEKMFS FTI  G C SH V   +G++ES++ DLL+GSEYV TYEDK
Sbjct: 178 LKMYKSYLELSKALEKMFSSFTI--GNCGSHGV---NGMNESKIADLLNGSEYVPTYEDK 232

Query: 250 DGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
           DGDWMLVGDVPWEMF +SC+RLRIMK S+AIGLAPRAMEKCKNR+
Sbjct: 233 DGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  216 bits (551), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/288 (46%), Positives = 164/288 (56%), Gaps = 61/288 (21%)

Query: 6   LNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSV 65
           +NLK TEL LGLPG           G   V    KS  G G KR F +  D         
Sbjct: 1   MNLKETELCLGLPG-----------GTETVESPAKS--GVGNKRGFSETVDLKL------ 41

Query: 66  SEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQ 125
                            N  +N  G V + +            NGA      PK    ++
Sbjct: 42  -----------------NLQSNKQGHVDLNT------------NGA------PKEKTFLK 66

Query: 126 DKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYL 185
           D       P+KAQVVGWPP+R+YRKN M++Q S   +++ +  G    +VKVSMDGAPYL
Sbjct: 67  DPSK---PPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYL 123

Query: 186 RKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLT 245
           RKVDLK Y+SY DLS AL KMFS FT+  G   +  +   D ++ES++MDLL+ SEYV +
Sbjct: 124 RKVDLKMYTSYKDLSDALAKMFSSFTM--GSYGAQGM--IDFMNESKVMDLLNSSEYVPS 179

Query: 246 YEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNR 293
           YEDKDGDWMLVGDVPW MF +SC+RLRIMK S+AIGLAPRAMEK KNR
Sbjct: 180 YEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNR 227

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AT33|IAA19_ORYSJ Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1

 Score =  214 bits (546), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 98/152 (64%), Positives = 121/152 (79%), Gaps = 2/152 (1%)

Query: 138 QVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYI 197
           QVVGWPP+RSYRKNT+++ ++K   + + K  +GC YVKVSMDGAPYLRKVDLKTYSSY 
Sbjct: 127 QVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYE 186

Query: 198 DLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVG 257
           DLS ALEKMFSCF  ++G+ SSH    RD L++    D L   EYVLTYEDKD DWMLVG
Sbjct: 187 DLSLALEKMFSCF--ITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVG 244

Query: 258 DVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEK 289
           D+PW++FT SCR+LRIM+ SDA G+APR++E+
Sbjct: 245 DLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75GB1|IAA17_ORYSJ Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1

 Score =  214 bits (545), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 110/157 (70%), Positives = 121/157 (77%), Gaps = 17/157 (10%)

Query: 139 VVGWPPIRSYRKNTMSS-QSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYI 197
           VVGWPPIRSYRKNTM++ Q   + +D+EAK G G LYVKVSMDGAPYLRKVDLKTY +Y 
Sbjct: 117 VVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYK 176

Query: 198 DLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVG 257
           DLS+ALEKMF  FT             +DGLSESR        EYVLTYEDKDGDWMLVG
Sbjct: 177 DLSTALEKMFIGFTT-----------GKDGLSESR-----KDGEYVLTYEDKDGDWMLVG 220

Query: 258 DVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
           DVPWEMF +SCRRLRIMK SDAIGLAPRA++K KNRN
Sbjct: 221 DVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNRN 257

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/244 (51%), Positives = 149/244 (61%), Gaps = 30/244 (12%)

Query: 67  EAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGG---PVLEDGNGACVAAQSPKPVMM 123
           EA   RL  P G         NHG    G ++G  G    V    N +  A  S   V +
Sbjct: 5   EATELRLGLPGG---------NHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDL 55

Query: 124 VQDKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAK-----------LGLGC 172
              K+     P+KAQVVGWPP+RS+RKN MS Q     D +E                 C
Sbjct: 56  ENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASAC 115

Query: 173 L---YVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLS 229
               YVKVSMDGAPYLRK+DLK Y +Y DLS+AL KMFS FTI  G      +  +D ++
Sbjct: 116 ATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTI--GNYGPQGM--KDFMN 171

Query: 230 ESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEK 289
           ES+L+DLL+GS+YV TYEDKDGDWMLVGDVPWEMF DSC+R+RIMK S+AIGLAPRA+EK
Sbjct: 172 ESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEK 231

Query: 290 CKNR 293
           CKNR
Sbjct: 232 CKNR 235

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  207 bits (528), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 139/298 (46%), Positives = 167/298 (56%), Gaps = 69/298 (23%)

Query: 6   LNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSV 65
           +NLKATEL LGLPG           G  AV    KS VGS  KR F +  D         
Sbjct: 6   MNLKATELCLGLPG-----------GAEAVESPAKSAVGS--KRGFSETVDL-------- 44

Query: 66  SEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQ 125
                            N  +N  G V + + S +                 PK    ++
Sbjct: 45  ---------------MLNLQSNKEGSVDLKNVSAV-----------------PKEKTTLK 72

Query: 126 DKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQ--SSKNDDDSEAKLGLGCL------YVKV 177
           D       P+KAQVVGWPP+R+YRKN M+ Q  SS  ++ S  K G           VKV
Sbjct: 73  DPSK---PPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKV 129

Query: 178 SMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLL 237
           SMDGAPYLRKVDLK Y SY DLS AL KMFS FT+  G   +  +   D ++ES+LM+LL
Sbjct: 130 SMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTM--GNYGAQGM--IDFMNESKLMNLL 185

Query: 238 HGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEK-CKNRN 294
           + SEYV +YEDKDGDWMLVGDVPWEMF +SC+RLRIMK S+A+GLAPRAMEK CKNR+
Sbjct: 186 NSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
255546413	297	Auxin-responsive protein IAA27, putative	0.894	0.885	0.683	2e-98
225445174	320	PREDICTED: auxin-responsive protein IAA2	0.918	0.843	0.664	5e-97
225442559	343	PREDICTED: auxin-responsive protein IAA2	0.925	0.793	0.630	2e-95
302398573	319	ARF domain class transcription factor [M	0.914	0.843	0.625	3e-92
297743239	292	unnamed protein product [Vitis vinifera]	0.829	0.835	0.628	2e-90
359482910	334	PREDICTED: auxin-responsive protein IAA2	0.894	0.787	0.611	8e-90
224119832	307	predicted protein [Populus trichocarpa]	0.891	0.853	0.635	4e-89
449465681	306	PREDICTED: auxin-responsive protein IAA2	0.901	0.866	0.627	1e-87
224070929	349	predicted protein [Populus trichocarpa]	0.904	0.762	0.603	2e-86
356550522	307	PREDICTED: auxin-responsive protein IAA2	0.911	0.872	0.599	2e-86

>gi|255546413|ref|XP_002514266.1| Auxin-responsive protein IAA27, putative [Ricinus communis] gi|223546722|gb|EEF48220.1| Auxin-responsive protein IAA27, putative [Ricinus communis]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/294 (68%), Positives = 223/294 (75%), Gaps = 31/294 (10%)

Query: 4   SGLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDA-DAKWV 62
           +GLN+KATELRLGLPGSESPER +  N N     S KSF+ SGAKR F  A       WV
Sbjct: 32  NGLNMKATELRLGLPGSESPERENGLNNN-----SNKSFMSSGAKRGFSVAIHGGSGNWV 86

Query: 63  FSVSEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVM 122
           FS ++ +    FSPR          N GKV   SDSG     ++DG       QSPK   
Sbjct: 87  FSATDGSEPG-FSPRAA--------NAGKVITASDSGH----VKDG-----LPQSPK--- 125

Query: 123 MVQDKKSHEIAP-SKAQVVGWPPIRSYRKNTMSSQSSKNDDD-SEAKLGLGCLYVKVSMD 180
            V+ +K +++AP SKAQVVGWPPIRS+RKNTM SQ  KNDDD +EAK G GCLY+KVSMD
Sbjct: 126 TVRQEKKNQVAPASKAQVVGWPPIRSFRKNTMGSQPPKNDDDDAEAKTGSGCLYIKVSMD 185

Query: 181 GAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGS 240
           GAPYLRKVDLKTYSSY++LSS LEKMFSCFTI  GQC SH VPSRDGLSESRLMDLLHGS
Sbjct: 186 GAPYLRKVDLKTYSSYMELSSGLEKMFSCFTI--GQCGSHGVPSRDGLSESRLMDLLHGS 243

Query: 241 EYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
           EYVLTYEDKDGDWMLVGDVPW+MFTD+CRRLRIMKSS+AIGLAPRAMEKCKNRN
Sbjct: 244 EYVLTYEDKDGDWMLVGDVPWKMFTDTCRRLRIMKSSEAIGLAPRAMEKCKNRN 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445174|ref|XP_002284118.1| PREDICTED: auxin-responsive protein IAA27 isoform 1 [Vitis vinifera]

 Score =  360 bits (923), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 206/310 (66%), Positives = 228/310 (73%), Gaps = 40/310 (12%)

Query: 4   SGLNLKATELRLGLPGSESPER-----GSDKNGNAAVILSLKSFVGSGAKRVFCDATDA- 57
           +GLNLKATELRLGLPGSESPER     G DKNG    +L  K+ V SGAKR F DA D  
Sbjct: 32  NGLNLKATELRLGLPGSESPERIDSVGGLDKNGYPLGVL--KNLV-SGAKRGFSDAIDGG 88

Query: 58  DAKWVFSVSEAA------AGRLFSPRGGGSS------NNNNNNHGKVHVGSDSGLGGPVL 105
             KWVFS S  +       G LFSPRGG         + +NN H        S LG PV 
Sbjct: 89  SGKWVFSGSGGSETDLTKGGGLFSPRGGNGGGKHLGGSESNNQH--------SSLGTPVK 140

Query: 106 EDGNGACVAAQSPKPVMMVQDKKSHEIAPS-KAQVVGWPPIRSYRKNTMSSQSSKNDDDS 164
            D     V  QSPKP+    +KK    AP+ KAQVVGWPPIRS+RKN+M+S   KND+D+
Sbjct: 141 ND-----VVPQSPKPM---HEKKPQISAPAAKAQVVGWPPIRSFRKNSMASNLPKNDEDA 192

Query: 165 EAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPS 224
           E KLG GCLYVKVSMDGAPYLRKVDLK YS+Y++LSSALEKMFSCFTI  GQC S+ VP 
Sbjct: 193 EGKLGSGCLYVKVSMDGAPYLRKVDLKLYSTYMELSSALEKMFSCFTI--GQCGSNGVPI 250

Query: 225 RDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAP 284
           RDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSC+R+RIMKSS+AIGLAP
Sbjct: 251 RDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRMRIMKSSEAIGLAP 310

Query: 285 RAMEKCKNRN 294
           RAMEKCK+RN
Sbjct: 311 RAMEKCKSRN 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442559|ref|XP_002284282.1| PREDICTED: auxin-responsive protein IAA27-like isoform 1 [Vitis vinifera]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/322 (63%), Positives = 228/322 (70%), Gaps = 50/322 (15%)

Query: 4   SGLNLKATELRLGLPGSESPER---------GSD--KNGNAAVILSLKSFVGSGAKRVFC 52
           + LNL+ TELRLGLPGSESPER         G D     N   + SLK FV SGAKR F 
Sbjct: 41  TALNLRETELRLGLPGSESPERKPQLGVSLFGKDLEDKTNGYSLGSLKGFV-SGAKRGFS 99

Query: 53  DATDADAKWVFSV---SEAAAGR---LFSPRGG------GSSNNNNNNHGKVHVGSDSGL 100
           DA D   KWVFSV   SE   G+   LFSPRGG      G  +NN+           S +
Sbjct: 100 DAIDGSGKWVFSVNGGSEVDLGKGAVLFSPRGGNGVKPLGGLDNNS--------AQKSCM 151

Query: 101 GGPVLEDGNGACVAAQSPKPVMMVQDKK-------SHEIAPS-KAQVVGWPPIRSYRKNT 152
            GP ++D      A  SPKPV   Q+KK        H  AP+ KAQVVGWPPIRS+RKNT
Sbjct: 152 PGPAMKD----VAAPSSPKPV---QEKKPQASAANEHASAPAAKAQVVGWPPIRSFRKNT 204

Query: 153 MSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTI 212
           M+S S+KN++D+E K GLGCLYVKVSMDGAPYLRKVDLK Y +Y++LSSALEKMFSCFTI
Sbjct: 205 MAS-SAKNNEDAEGKSGLGCLYVKVSMDGAPYLRKVDLKIYCNYMELSSALEKMFSCFTI 263

Query: 213 VSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLR 272
             GQC SH +P RDGL+ES LMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFT+SC+RLR
Sbjct: 264 --GQCGSHGLPGRDGLTESHLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLR 321

Query: 273 IMKSSDAIGLAPRAMEKCKNRN 294
           IMK S+AIGLAPRAMEKCKNRN
Sbjct: 322 IMKGSEAIGLAPRAMEKCKNRN 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398573|gb|ADL36581.1| ARF domain class transcription factor [Malus x domestica]

 Score =  344 bits (882), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/315 (62%), Positives = 217/315 (68%), Gaps = 46/315 (14%)

Query: 6   LNLKATELRLGLPGSESPERGSDKNGNAAV--------ILSLKSFVGSGAKRVFCDATD- 56
           LNLKATELRLGLPGS+SPER     G   V        +  +K  V SGAKR F DA D 
Sbjct: 25  LNLKATELRLGLPGSQSPERDGGGGGGGGVEEKATGFSVCGVKGLV-SGAKRGFSDAIDG 83

Query: 57  ADAKWVFS------VSEAAAGRLFSPRGGGSSNNNNNNHGKVHVG------SDSGLGGPV 104
           A  KWVFS      V     G L SPRG         N GK            +GL G  
Sbjct: 84  ASGKWVFSGSGGSEVELGKGGNLLSPRG--------VNAGKALAAGCEPSNQPTGLAGSA 135

Query: 105 LEDGNGACVAAQSPKPVMMVQDKKSH----EIAPS-KAQVVGWPPIRSYRKNTMSSQSSK 159
           ++DG       QSPKP+    +KKS       AP+ KAQVVGWPPIRS+RKN+M+S  SK
Sbjct: 136 VKDG-----VQQSPKPL---HEKKSQGSAGSTAPAAKAQVVGWPPIRSFRKNSMASVPSK 187

Query: 160 NDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSS 219
           N DD+E K+G GCLYVKVSMDGAPYLRKVDLKTY SY+DLS ALEKMFSCFTI  GQC S
Sbjct: 188 NGDDAEGKMGAGCLYVKVSMDGAPYLRKVDLKTYGSYLDLSLALEKMFSCFTI--GQCGS 245

Query: 220 HNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDA 279
           H   SRDGLSESRLMDLLHG+EYVLTYEDKDGDWMLVGDVPWEMFTDSC+R+RIMKSS+A
Sbjct: 246 HGA-SRDGLSESRLMDLLHGAEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRMRIMKSSEA 304

Query: 280 IGLAPRAMEKCKNRN 294
           IGLAPRAM+KCKN N
Sbjct: 305 IGLAPRAMQKCKNSN 319

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743239|emb|CBI36106.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/299 (62%), Positives = 210/299 (70%), Gaps = 55/299 (18%)

Query: 4   SGLNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVF 63
           + LNL+ TELRLGLPGSESPER     G          FV SGAKR F DA D   KWVF
Sbjct: 41  TALNLRETELRLGLPGSESPERKPQLGG----------FV-SGAKRGFSDAIDGSGKWVF 89

Query: 64  SVSEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMM 123
           SV+            GGS                S + GP ++D      A  SPKPV  
Sbjct: 90  SVN------------GGSEK--------------SCMPGPAMKD----VAAPSSPKPV-- 117

Query: 124 VQDKK-------SHEIAPS-KAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYV 175
            Q+KK        H  AP+ KAQVVGWPPIRS+RKNTM+S S+KN++D+E K GLGCLYV
Sbjct: 118 -QEKKPQASAANEHASAPAAKAQVVGWPPIRSFRKNTMAS-SAKNNEDAEGKSGLGCLYV 175

Query: 176 KVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMD 235
           KVSMDGAPYLRKVDLK Y +Y++LSSALEKMFSCFTI  GQC SH +P RDGL+ES LMD
Sbjct: 176 KVSMDGAPYLRKVDLKIYCNYMELSSALEKMFSCFTI--GQCGSHGLPGRDGLTESHLMD 233

Query: 236 LLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
           LLHGSEYVLTYEDKDGDWMLVGDVPWEMFT+SC+RLRIMK S+AIGLAPRAMEKCKNRN
Sbjct: 234 LLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKGSEAIGLAPRAMEKCKNRN 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482910|ref|XP_003632858.1| PREDICTED: auxin-responsive protein IAA27-like isoform 2 [Vitis vinifera]

 Score =  336 bits (861), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 197/322 (61%), Positives = 221/322 (68%), Gaps = 59/322 (18%)

Query: 4   SGLNLKATELRLGLPGSESPER---------GSD--KNGNAAVILSLKSFVGSGAKRVFC 52
           + LNL+ TELRLGLPGSESPER         G D     N   + SLK FV SGAKR F 
Sbjct: 41  TALNLRETELRLGLPGSESPERKPQLGVSLFGKDLEDKTNGYSLGSLKGFV-SGAKRGFS 99

Query: 53  DATDADAKWVFSV---SEAAAGR---LFSPRGG------GSSNNNNNNHGKVHVGSDSGL 100
           DA D   KWVFSV   SE   G+   LFSPRGG      G  +NN+           S +
Sbjct: 100 DAIDGSGKWVFSVNGGSEVDLGKGAVLFSPRGGNGVKPLGGLDNNS--------AQKSCM 151

Query: 101 GGPVLEDGNGACVAAQSPKPVMMVQDKK-------SHEIAPS-KAQVVGWPPIRSYRKNT 152
            GP ++D      A  SPKPV   Q+KK        H  AP+ KAQVVGWPPIRS+RKNT
Sbjct: 152 PGPAMKD----VAAPSSPKPV---QEKKPQASAANEHASAPAAKAQVVGWPPIRSFRKNT 204

Query: 153 MSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTI 212
           M+S S+KN++D+E K GLGCLYVKVSMDGAPYLRKVDLK Y +Y++LSSALEKMFSCFTI
Sbjct: 205 MAS-SAKNNEDAEGKSGLGCLYVKVSMDGAPYLRKVDLKIYCNYMELSSALEKMFSCFTI 263

Query: 213 VSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLR 272
                       RDGL+ES LMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFT+SC+RLR
Sbjct: 264 -----------GRDGLTESHLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLR 312

Query: 273 IMKSSDAIGLAPRAMEKCKNRN 294
           IMK S+AIGLAPRAMEKCKNRN
Sbjct: 313 IMKGSEAIGLAPRAMEKCKNRN 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119832|ref|XP_002331172.1| predicted protein [Populus trichocarpa] gi|222873255|gb|EEF10386.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 190/299 (63%), Positives = 209/299 (69%), Gaps = 37/299 (12%)

Query: 5   GLNLKATELRLGLPGSESPERGSDKNGNAAVILSL-------KSFVGSGAKRVFCDATDA 57
           GLNLKATELRLGLPGS+SPERG   N N  +  SL       KSFV SGA+R F  A   
Sbjct: 37  GLNLKATELRLGLPGSDSPERG---NENQQLGFSLNNNNSKDKSFV-SGARRGFSVAIHG 92

Query: 58  -DAKWVFSVSEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQ 116
             A WVFS   A +   FS RG      N+   G  H         PV+++       A 
Sbjct: 93  GSANWVFS-GNAGSDPNFSLRGA-----NSGKEGFPHSSK------PVVQENKSQVDGAN 140

Query: 117 SPKPVMMVQDKKSHEIAP-SKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYV 175
           +            H  AP SKAQVVGWPPIRS+RKNTM+S  SKNDD +E K G GCLYV
Sbjct: 141 T----------NGHGAAPASKAQVVGWPPIRSFRKNTMASHLSKNDDGAEVKSGSGCLYV 190

Query: 176 KVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMD 235
           KVSMDGAPYLRKVDLKT+ SY++LSSALEKMFSCFTI  GQC SH VP +DGLSESRLMD
Sbjct: 191 KVSMDGAPYLRKVDLKTFGSYMELSSALEKMFSCFTI--GQCGSHVVPGQDGLSESRLMD 248

Query: 236 LLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
           LLHGSEYVLTYEDKD DWMLVGDVPW+MFTDSCRRLRIMK S+AIGLAPRAMEKCK+RN
Sbjct: 249 LLHGSEYVLTYEDKDNDWMLVGDVPWKMFTDSCRRLRIMKGSEAIGLAPRAMEKCKSRN 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465681|ref|XP_004150556.1| PREDICTED: auxin-responsive protein IAA27-like [Cucumis sativus]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/301 (62%), Positives = 213/301 (70%), Gaps = 36/301 (11%)

Query: 4   SGLNLKATELRLGLPGSESPERG---SDKNGNAAVILSLKSFVGSGAKRVFCDATD-ADA 59
           +GLNLKATELRLGLPGSESP R     DKNG        KS V SGAKR F  A D A A
Sbjct: 32  AGLNLKATELRLGLPGSESPGRDDGFEDKNG-----FLHKSSV-SGAKRGFSIAIDRASA 85

Query: 60  KWVFSVSEAAA------GRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACV 113
           KWV   S  +       G LFSPRG       N N  +    + SG+     +DG     
Sbjct: 86  KWVLPASAGSEADSSTNGGLFSPRG------VNENKTQPPASAVSGV-----KDG----- 129

Query: 114 AAQSPKPVMMVQDKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCL 173
            + S KP+   ++K       +KAQVVGWPPIRS+RKN+M++Q  KN DD++ KLG GCL
Sbjct: 130 ISPSAKPLH--EEKPQLSPPAAKAQVVGWPPIRSFRKNSMATQPPKNTDDADGKLGSGCL 187

Query: 174 YVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRL 233
           YVKVSMDGAPYLRKVDLKTY SY+DLSSALEKMFS FTI  G   S+ VP+RD L+ESRL
Sbjct: 188 YVKVSMDGAPYLRKVDLKTYVSYVDLSSALEKMFSSFTI--GHYGSNGVPNRDALNESRL 245

Query: 234 MDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNR 293
           MDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFT+SC R+RIMKSS+AIGLAPRAMEKCKNR
Sbjct: 246 MDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCTRMRIMKSSEAIGLAPRAMEKCKNR 305

Query: 294 N 294
           N
Sbjct: 306 N 306

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070929|ref|XP_002303297.1| predicted protein [Populus trichocarpa] gi|222840729|gb|EEE78276.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/313 (60%), Positives = 213/313 (68%), Gaps = 47/313 (15%)

Query: 9   KATELRLGLPGSESPER------------GSD---KNGNAAVILSLKSFVGSGAKRVFCD 53
           K TELRLGLPG +SPER            G D    N N   +  LK+ V SG KR F D
Sbjct: 57  KETELRLGLPGYQSPERKLTLPAAGVSLFGKDIDTNNTNGYPLRPLKNLV-SGTKRGFSD 115

Query: 54  A-TDADAKWVFSVS---EAAAGR---LFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLE 106
           A   +  KWVFS S   E   G+   LFSPRG      +N N  K      S + GP  +
Sbjct: 116 AIVGSSGKWVFSGSNGSEVDLGKGAILFSPRG------DNGNSQK------SCVAGPAKK 163

Query: 107 DGNGACVAAQSPKPVM----MVQDKKSHEIAPS-KAQVVGWPPIRSYRKNTMSSQSSKND 161
           D       AQSPKPV      V     +  AP+ KAQVVGWPPIRS+RKNTM+S   KN+
Sbjct: 164 DD-----VAQSPKPVQEKISQVAAANENSSAPAAKAQVVGWPPIRSFRKNTMASSLVKNN 218

Query: 162 DDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHN 221
           +D E K G GCLYVKVSMDGAPYLRKVDLKTYS+Y++LSSALEKMFSCFTI  GQC SH 
Sbjct: 219 EDVEGKSGYGCLYVKVSMDGAPYLRKVDLKTYSNYLELSSALEKMFSCFTI--GQCGSHG 276

Query: 222 VPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIG 281
           +  +DGL+ESRL D+LHGSEYVLTYEDKDGDWMLVGDVPW+MFT+SCRRLRIMK S+AIG
Sbjct: 277 LRGQDGLTESRLKDILHGSEYVLTYEDKDGDWMLVGDVPWDMFTNSCRRLRIMKGSEAIG 336

Query: 282 LAPRAMEKCKNRN 294
           LAPRAMEKCKNRN
Sbjct: 337 LAPRAMEKCKNRN 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550522|ref|XP_003543635.1| PREDICTED: auxin-responsive protein IAA27-like [Glycine max]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/307 (59%), Positives = 211/307 (68%), Gaps = 39/307 (12%)

Query: 4   SGLNLKATELRLGLPGSESPER---------GSDKNGNAAVILSLKSFVGSGAKRVFCDA 54
           S LNLK TELRLGLPG ESPER         G +   N   + SLK+    GAKR F DA
Sbjct: 24  SSLNLKETELRLGLPGCESPERKSGSALCLFGKELQNNNNNVCSLKA----GAKRGFSDA 79

Query: 55  TDADAKWVFSVSEAAAGR--LFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGAC 112
            D       SV+E + G   LFSPRGG        N GK  +G D+     + E G    
Sbjct: 80  IDTS-----SVTEGSQGASALFSPRGG--------NVGKPLIGLDTQTNTTIKEVG---- 122

Query: 113 VAAQSPKPVMMVQDK-----KSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAK 167
              QS KPV    D+            +KAQVVGWPPIRS+RKNTM+S  +KN+D++E K
Sbjct: 123 AVPQSAKPVQENNDQFAATNAHAIAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGK 182

Query: 168 LGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDG 227
            G GCLYVKVSMDGAPYLRKVDLKTY++Y++LSSALEKMFSCFTI  GQC+S  +P +DG
Sbjct: 183 SGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTI--GQCNSPGLPGKDG 240

Query: 228 LSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAM 287
           LSES L DLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMK S+AIGLAPRAM
Sbjct: 241 LSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAM 300

Query: 288 EKCKNRN 294
           EK +++N
Sbjct: 301 EKSRSQN 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.663	0.639	0.666	5.2e-79
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.656	0.725	0.625	1.6e-67
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.425	0.475	0.503	6.1e-62
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.530	0.461	0.658	9.9e-62
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.581	0.665	0.643	1.1e-60
UNIPROTKB|Q6AT33	281	IAA19 "Auxin-responsive protei	0.520	0.544	0.645	4.2e-59
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.687	0.855	0.529	6.1e-56
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.581	0.75	0.595	6.9e-55
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.534	0.646	0.635	3.7e-54
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.513	0.659	0.612	4.2e-51

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
 Identities = 140/210 (66%), Positives = 162/210 (77%)

Query:    94 VGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAP-SKAQVVGWPPIRSYRKNT 152
             VGS SG    V++DG          KP + V++KKS   AP SKAQVVGWPPIRS+RKN+
Sbjct:   102 VGSGSGPRTSVVKDGKSTTFT----KPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNS 157

Query:   153 M-SSQSSK--ND---DDSEAKLG--LGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALE 204
             M SSQS K  N+   +++EAK G    CLYVKVSM+GAPYLRK+DLKTY SY++LSSALE
Sbjct:   158 MASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALE 217

Query:   205 KMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMF 264
             KMFSCFTI  GQ  SH    RDGL+ESRL DLL GSEYV+TYEDKD DWMLVGDVPWEMF
Sbjct:   218 KMFSCFTI--GQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMF 275

Query:   265 TDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
               SC++LRIMKSS+AIGLAPR MEKC++RN
Sbjct:   276 ICSCKKLRIMKSSEAIGLAPRVMEKCRSRN 305

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 614 (221.2 bits), Expect = 1.6e-67, Sum P(2) = 1.6e-67
 Identities = 130/208 (62%), Positives = 153/208 (73%)

Query:    96 SDSGLGGPVLE-----DGNGACVAAQSPKPVMMVQDKKSHEIAPSKAQVVGWPPIRSYRK 150
             +D+ +GGP  +      G  A  AA++ +     ++KK  +   +KAQVVGWPPIRSYRK
Sbjct:    65 ADAIVGGPAGQRREAAGGKAAAAAAEAEEE----EEKKKAQAPAAKAQVVGWPPIRSYRK 120

Query:   151 NTMS-SQSS-KNDDDSEAKLG--LGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKM 206
             NTM+ SQ + K  DD EAK     GCLYVKVSMDGAPYLRKVDLK Y +Y +LS ALEKM
Sbjct:   121 NTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKM 180

Query:   207 FSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTD 266
             FSCFT+  G+  S+    RDGLS+ RLMDL +G+E VLTYEDKD DWMLVGDVPW MFTD
Sbjct:   181 FSCFTVGHGE--SNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTD 238

Query:   267 SCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
             SCRRLRIMK SDA+GLAPRA +K KNRN
Sbjct:   239 SCRRLRIMKGSDAVGLAPRATDKSKNRN 266

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 284 (105.0 bits), Expect = 6.1e-62, Sum P(3) = 6.1e-62
 Identities = 68/135 (50%), Positives = 86/135 (63%)

Query:    97 DSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAP---SKAQVVGWPPIRSYRKNTM 153
             ++ L  P    G G   AA+  + V   ++ K     P   +KAQVVGWPPIRSYRKNTM
Sbjct:    81 EAALTPPTAAAGKGK--AAREGEEVGAEEEDKKVAAPPQPAAKAQVVGWPPIRSYRKNTM 138

Query:   154 SSQSSK-NDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTI 212
             ++   K N +D +AK G G LYVKVSMDGAPYLRKVDLKTY +Y D+S  LEKMF  F+ 
Sbjct:   139 ATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFS- 197

Query:   213 VSGQCSSHNVPSRDG 227
              +G+  + N   +DG
Sbjct:   198 -TGKEGAEN--QKDG 209

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
 Identities = 106/161 (65%), Positives = 133/161 (82%)

Query:   135 SKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYS 194
             +KAQ+VGWPP+RSYRKNT+++ + KN D+ + + G G L+VKVSMDGAPYLRKVDL++Y+
Sbjct:   180 AKAQIVGWPPVRSYRKNTLAT-TCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYT 238

Query:   195 SYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254
             +Y +LSSALEKMF+ FT+  GQC S+    +D LSE++L DLL+G +YVLTYEDKDGDWM
Sbjct:   239 NYGELSSALEKMFTTFTL--GQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWM 296

Query:   255 LVGDVPWEMFTDSCRRLRIMKSSDAIGLA--PRAMEKCKNR 293
             LVGDVPWEMF D C++L+IMK  DAIGLA  PRAMEK K R
Sbjct:   297 LVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 548 (198.0 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 123/191 (64%), Positives = 138/191 (72%)

Query:   108 GNGACVAAQSPKPVMMVQDKK--SHEIAPS-KAQVVGWPPIRSYRKNTMSSQSSKND-DD 163
             G G   AA         +DKK  +   AP+ KAQVVGWPPIRSYRKNTM++   K+  +D
Sbjct:    83 GKGKKAAAGEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQLKSSKED 142

Query:   164 SEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVP 223
             +EAK G G LYVKVSMDGAPYLRKVDLKTY +Y DLS+ALEKMF  FT  +G        
Sbjct:   143 AEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFT--TG-------- 192

Query:   224 SRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLA 283
              +DGLSESR        EYVLTYEDKDGDWMLVGDVPWEMF +SCRRLRIMK SDAIGLA
Sbjct:   193 -KDGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLA 246

Query:   284 PRAMEKCKNRN 294
             PRA++K KNRN
Sbjct:   247 PRAVDKSKNRN 257

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q6AT33 IAA19 "Auxin-responsive protein IAA19" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 547 (197.6 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 100/155 (64%), Positives = 124/155 (80%)

Query:   135 SKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYS 194
             +KAQVVGWPP+RSYRKNT+++ ++K   + + K  +GC YVKVSMDGAPYLRKVDLKTYS
Sbjct:   124 AKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYS 183

Query:   195 SYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM 254
             SY DLS ALEKMFSCF  ++G+ SSH    RD L++    D L   EYVLTYEDKD DWM
Sbjct:   184 SYEDLSLALEKMFSCF--ITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWM 241

Query:   255 LVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEK 289
             LVGD+PW++FT SCR+LRIM+ SDA G+APR++E+
Sbjct:   242 LVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
 Identities = 118/223 (52%), Positives = 147/223 (65%)

Query:    89 HGKVHVGSDSGLGG---PVLEDGNGACVAAQSPKPVMMVQDKKSHEIAPSKAQVVGWPPI 145
             HG    G ++G  G    V    N +  A  S   V +   K+     P+KAQVVGWPP+
Sbjct:    18 HGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEKVVKPPAKAQVVGWPPV 77

Query:   146 RSYRKNTMSSQ------SSKNDDDSEAKLGL-----GCL---YVKVSMDGAPYLRKVDLK 191
             RS+RKN MS Q      +++ +D +    G       C    YVKVSMDGAPYLRK+DLK
Sbjct:    78 RSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLK 137

Query:   192 TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDG 251
              Y +Y DLS+AL KMFS FTI  G      +  +D ++ES+L+DLL+GS+YV TYEDKDG
Sbjct:   138 LYKTYQDLSNALSKMFSSFTI--GNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDG 193

Query:   252 DWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
             DWMLVGDVPWEMF DSC+R+RIMK S+AIGLAPRA+EKCKNR+
Sbjct:   194 DWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
 Identities = 106/178 (59%), Positives = 133/178 (74%)

Query:   117 SPKPVMMVQDKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVK 176
             +PK    ++D       P+KAQVVGWPP+R+YRKN M++Q S   +++ +  G    +VK
Sbjct:    58 APKEKTFLKDPSK---PPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVK 114

Query:   177 VSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDL 236
             VSMDGAPYLRKVDLK Y+SY DLS AL KMFS FT+  G   +  +   D ++ES++MDL
Sbjct:   115 VSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTM--GSYGAQGMI--DFMNESKVMDL 170

Query:   237 LHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNRN 294
             L+ SEYV +YEDKDGDWMLVGDVPW MF +SC+RLRIMK S+AIGLAPRAMEK KNR+
Sbjct:   171 LNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 108/170 (63%), Positives = 128/170 (75%)

Query:   134 PSKAQVVGWPPIRSYRKNTMSSQ--SSKNDDDSEAKLG------LGCLYVKVSMDGAPYL 185
             P+KAQVVGWPP+R+YRKN M+ Q  SS  ++ S  K G       G   VKVSMDGAPYL
Sbjct:    78 PAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYL 137

Query:   186 RKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLT 245
             RKVDLK Y SY DLS AL KMFS FT+  G   +  +   D ++ES+LM+LL+ SEYV +
Sbjct:   138 RKVDLKMYKSYQDLSDALAKMFSSFTM--GNYGAQGMI--DFMNESKLMNLLNSSEYVPS 193

Query:   246 YEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEK-CKNRN 294
             YEDKDGDWMLVGDVPWEMF +SC+RLRIMK S+A+GLAPRAMEK CKNR+
Sbjct:   194 YEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
 Identities = 98/160 (61%), Positives = 119/160 (74%)

Query:   134 PSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTY 193
             P+KAQVVGWPP+RSYRKN M S   K+    EA       +VKVSMDGAPYLRK+DL+ Y
Sbjct:    78 PAKAQVVGWPPVRSYRKNVMVS-CQKSSGGPEA-----AAFVKVSMDGAPYLRKIDLRMY 131

Query:   194 SSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDW 253
              SY +LS+AL  MFS FT+  G+         D ++E +LMDL++  +YV +YEDKDGDW
Sbjct:   132 KSYDELSNALSNMFSSFTM--GKHGGEE-GMIDFMNERKLMDLVNSWDYVPSYEDKDGDW 188

Query:   254 MLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRAMEKCKNR 293
             MLVGDVPW MF D+C+RLR+MK SDAIGLAPRAMEKCK+R
Sbjct:   189 MLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5Z749	IAA21_ORYSJ	No assigned EC number	0.725	0.5238	0.5789	yes	no
Q9ZSY8	IAA27_ARATH	No assigned EC number	0.5933	0.8809	0.8491	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016706001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (320 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	1e-86

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  256 bits (656), Expect = 1e-86
 Identities = 125/281 (44%), Positives = 143/281 (50%), Gaps = 93/281 (33%)

Query: 6   LNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSV 65
           LNLKATELRLGLPG   PE     +              +  KR F + T+         
Sbjct: 1   LNLKATELRLGLPGGSEPESEPSTS------------SVTSNKRGFSEVTED-------- 40

Query: 66  SEAAAGRLFSPRGGGSSNNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQ 125
                       G  SS   + +   V    DS                           
Sbjct: 41  ------------GISSSLGEDKSTISVSSNGDSA-------------------------- 62

Query: 126 DKKSHEIAPSKAQVVGWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYL 185
                   P+KAQVVGWPP+RSYRKN++  + S               YVKVSMDGAPYL
Sbjct: 63  ------KPPAKAQVVGWPPVRSYRKNSLREKKSG-------------SYVKVSMDGAPYL 103

Query: 186 RKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLT 245
           RKVDLK Y SY +LSSALEKMFSCFTI                 ES L+DLL+GSEYV T
Sbjct: 104 RKVDLKMYKSYDELSSALEKMFSCFTI----------------GESGLLDLLNGSEYVPT 147

Query: 246 YEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRA 286
           YEDKDGDWMLVGDVPWEMF +SC+RLRIMK S+AIGLAPR+
Sbjct: 148 YEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.41
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.15
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.9
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.79
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	96.76
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.27
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.13
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	95.52
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.09
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.07
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	94.95
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	94.63
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	89.34

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=1.4e-69  Score=483.18  Aligned_cols=214  Identities=60%  Similarity=0.923  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCCCCCCCCCCchhhhhcccccccCCCccccccccccccccceehhhhccccccCCCCCCCCCCC
Q 022618            6 LNLKATELRLGLPGSESPERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFSVSEAAAGRLFSPRGGGSSNNN   85 (294)
Q Consensus         6 lnlk~TELRLGLPGs~sper~~~~~~~~~~~~~~~~~~~~g~KRgFsda~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~   85 (294)
                      ||||+|||||||||+++|+...        ...++...+ ++||+|+++|+.+.......         .+.....    
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~--------~~~~~~~~~-~~kR~F~~aid~~~~~~~~~---------~~~~~~~----   58 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASS--------SSSSKKSSS-GNKRGFSEAIDSSSSNSQSS---------SSSSSDS----   58 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCccc--------ccccccccC-cccccchhhhhhcccccccc---------ccccccc----
Confidence            7999999999999999997221        223344445 99999999998764111000         0000000    


Q ss_pred             CCCCCCccccCCCCCCCCcccCCCCcccccCCCCcccccccccCCCCCC-CcCCcccCCCccchhhccccccCCCCCchh
Q 022618           86 NNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAP-SKAQVVGWPPIRSYRKNTMSSQSSKNDDDS  164 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~k~qVVGWPPIrs~Rkn~~~~~~~k~~~~~  164 (294)
                           ....              ......+     .   ........+| +++|+|||||||+||+|++...        
T Consensus        59 -----~~~~--------------~~~~~~~-----~---~~~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~--------  103 (215)
T PF02309_consen   59 -----SSSS--------------SSSSTSS-----S---SSDSSSSSPPASKAQVVGWPPVRSFRKNSLSEK--------  103 (215)
T ss_dssp             ------------------------------------------------------BTTBS----S----------------
T ss_pred             -----Cccc--------------ccccccc-----c---ccccccCCCCcccccccCCCccccccccccccc--------
Confidence                 0000              0000000     0   0011234456 7899999999999999987721        


Q ss_pred             hhhcCCCcceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEE
Q 022618          165 EAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVL  244 (294)
Q Consensus       165 ~~k~~~~~~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvL  244 (294)
                        +.+..++||||+|||+||||||||++|+||++|+.+|++||.+|+|  ++|+++      .+++..+.+++++++|+|
T Consensus       104 --~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i--~~~~~~------~~~~~~~~~~~~~~~~~l  173 (215)
T PF02309_consen  104 --QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSI--EQCGSH------GLNESGLLDLLNGSEYVL  173 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --ccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCc--cccccc------cccchhhccccCCcceeE
Confidence              1123478999999999999999999999999999999999999988  888763      356677888888999999


Q ss_pred             EEEcCCCCeEEccCcchhHHhhhceeeEEecCCcccCCChhh
Q 022618          245 TYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKSSDAIGLAPRA  286 (294)
Q Consensus       245 tYEDkEGDwMLVGDVPWemFv~svKRLrImk~Sea~glapr~  286 (294)
                      ||||+||||||||||||+|||++|||||||+.+|++||+|||
T Consensus       174 ~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  174 VYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             ------------------------------------------
T ss_pred             EEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            999999999999999999999999999999999999999996

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.41  E-value=0.00042  Score=52.38  Aligned_cols=68  Identities=25%  Similarity=0.435  Sum_probs=55.0

Q ss_pred             eEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCe
Q 022618          174 YVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDW  253 (294)
Q Consensus       174 fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDw  253 (294)
                      -|||+..|. +=|.+.+..--+|++|...++..|...                            ...+.|.|.|.||||
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~----------------------------~~~~~l~Y~D~dgD~   53 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL----------------------------DEDFQLKYKDEDGDL   53 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS----------------------------TSSEEEEEEETTSSE
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC----------------------------CccEEEEeeCCCCCE
Confidence            489999997 333588888889999999999999731                            136999999999999


Q ss_pred             EEccC-cchhHHhhhcee
Q 022618          254 MLVGD-VPWEMFTDSCRR  270 (294)
Q Consensus       254 MLVGD-VPWemFv~svKR  270 (294)
                      ..+-+ .=|++.+..+++
T Consensus        54 V~i~sd~Dl~~a~~~~~~   71 (84)
T PF00564_consen   54 VTISSDEDLQEAIEQAKE   71 (84)
T ss_dssp             EEESSHHHHHHHHHHHHH
T ss_pred             EEeCCHHHHHHHHHHHHh
Confidence            98875 568888887753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.15  E-value=0.0025  Score=48.13  Aligned_cols=65  Identities=26%  Similarity=0.401  Sum_probs=52.0

Q ss_pred             EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618          175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM  254 (294)
Q Consensus       175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM  254 (294)
                      |||.-.|.  -|.+-+..--+|++|.+.+.+.|...                            ...+.|.|+|.||||.
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~----------------------------~~~~~l~Y~Dedgd~v   53 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLD----------------------------NQSFTLKYQDEDGDLV   53 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCC----------------------------CCCeEEEEECCCCCEE
Confidence            68887554  67888888999999999999999731                            1268999999999998


Q ss_pred             EccC-cchhHHhhhce
Q 022618          255 LVGD-VPWEMFTDSCR  269 (294)
Q Consensus       255 LVGD-VPWemFv~svK  269 (294)
                      .+.+ .=|.+.+..++
T Consensus        54 ~l~sd~Dl~~a~~~~~   69 (81)
T smart00666       54 SLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EecCHHHHHHHHHHHH
Confidence            7665 57777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.90  E-value=0.0053  Score=46.07  Aligned_cols=66  Identities=27%  Similarity=0.406  Sum_probs=52.0

Q ss_pred             eEEEEEcCcccceeeecC-CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618          174 YVKVSMDGAPYLRKVDLK-TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD  252 (294)
Q Consensus       174 fVKV~MdG~pIGRKVDL~-~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD  252 (294)
                      -|||+-.|.  -|.+=+. ..-+|++|...|.+.|...     .                       ..+.+.|.|.|||
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~-----~-----------------------~~~~l~y~D~e~d   51 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD-----A-----------------------VSFKLKYPDEDGD   51 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC-----C-----------------------CcEEEEeeCCCCC
Confidence            378888876  4555555 8899999999999999731     0                       2589999999999


Q ss_pred             eEEccC-cchhHHhhhce
Q 022618          253 WMLVGD-VPWEMFTDSCR  269 (294)
Q Consensus       253 wMLVGD-VPWemFv~svK  269 (294)
                      |..+.+ .=|++.++.++
T Consensus        52 ~v~l~sd~Dl~~a~~~~~   69 (81)
T cd05992          52 LVTISSDEDLEEAIEEAR   69 (81)
T ss_pred             EEEeCCHHHHHHHHHHHh
Confidence            999887 67777777765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.79  E-value=0.0052  Score=48.56  Aligned_cols=55  Identities=24%  Similarity=0.404  Sum_probs=44.1

Q ss_pred             eEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCe
Q 022618          174 YVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDW  253 (294)
Q Consensus       174 fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDw  253 (294)
                      -|||...|.  -+.+-|..--+|++|...+.++|..     .                      +.+.|.|-|.|.||||
T Consensus         2 ~vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~-----~----------------------~~~~f~LkY~Ddegd~   52 (82)
T cd06407           2 RVKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL-----D----------------------DMSAFDLKYLDDDEEW   52 (82)
T ss_pred             EEEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC-----C----------------------CCCeeEEEEECCCCCe
Confidence            489999887  5556666667999999999999973     1                      1147999999999999


Q ss_pred             EEcc
Q 022618          254 MLVG  257 (294)
Q Consensus       254 MLVG  257 (294)
                      .++-
T Consensus        53 v~lt   56 (82)
T cd06407          53 VLLT   56 (82)
T ss_pred             EEee
Confidence            8764

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=96.76  E-value=0.005  Score=49.63  Aligned_cols=68  Identities=26%  Similarity=0.290  Sum_probs=50.1

Q ss_pred             eEEEEEcCcccceeeecC---CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCC
Q 022618          174 YVKVSMDGAPYLRKVDLK---TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKD  250 (294)
Q Consensus       174 fVKV~MdG~pIGRKVDL~---~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkE  250 (294)
                      -|||.-+|.-+=-++++.   ..-+|++|...+.+.|...                           ...+|+|.|.|.|
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~---------------------------~~~~~~l~Y~Ded   54 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS---------------------------PDADLSLTYTDED   54 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC---------------------------CCCcEEEEEECCC
Confidence            489999998444455543   4679999999999999631                           1247999999999


Q ss_pred             CCeEEccCcchhHHhhhcee
Q 022618          251 GDWMLVGDVPWEMFTDSCRR  270 (294)
Q Consensus       251 GDwMLVGDVPWemFv~svKR  270 (294)
                      |||..+-+.  +.|...+.+
T Consensus        55 gd~V~l~~D--~DL~~a~~~   72 (91)
T cd06398          55 GDVVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             CCEEEEccH--HHHHHHHHH
Confidence            999988765  444444443

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.27  E-value=0.015  Score=46.53  Aligned_cols=53  Identities=15%  Similarity=0.282  Sum_probs=45.0

Q ss_pred             EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618          175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM  254 (294)
Q Consensus       175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM  254 (294)
                      |||.-.|.-+--+++-+..-+|++|...+.++|..                            +  .+.|.|-|.||||.
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l----------------------------~--~f~lKYlDde~e~v   52 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL----------------------------N--DIQIKYVDEENEEV   52 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC----------------------------C--cceeEEEcCCCCEE
Confidence            79999998777777777788999999999999973                            1  47899999999998


Q ss_pred             Ecc
Q 022618          255 LVG  257 (294)
Q Consensus       255 LVG  257 (294)
                      ++-
T Consensus        53 ~ls   55 (81)
T cd06396          53 SVN   55 (81)
T ss_pred             EEE
Confidence            874

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.13  E-value=0.042  Score=44.08  Aligned_cols=74  Identities=18%  Similarity=0.436  Sum_probs=50.7

Q ss_pred             eEEEEEcCcccceeeecCCCC-ChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618          174 YVKVSMDGAPYLRKVDLKTYS-SYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD  252 (294)
Q Consensus       174 fVKV~MdG~pIGRKVDL~~~~-sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD  252 (294)
                      -+|+.-.|.  -|.+=+..-. +|.+|...+.+.|..      .+.+                   ...+.+.|.|.|||
T Consensus         2 iiK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~------~~~~-------------------~~~flIKYkD~dGD   54 (81)
T cd06401           2 ILKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRG------KLGS-------------------SDDVLIKYKDEDGD   54 (81)
T ss_pred             eEEEEeCCe--EEEEeccCccccHHHHHHHHHHHhcc------ccCC-------------------cccEEEEEECCCCC
Confidence            367777776  4665554433 999999999999973      1111                   13799999999999


Q ss_pred             eEEccCc---chhHHhhhceeeEEe
Q 022618          253 WMLVGDV---PWEMFTDSCRRLRIM  274 (294)
Q Consensus       253 wMLVGDV---PWemFv~svKRLrIm  274 (294)
                      +.-+.+-   -|-.-+...+||+|.
T Consensus        55 lVTIts~~dL~~A~~~~~~~~l~~~   79 (81)
T cd06401          55 LITIFDSSDLSFAIQCSRILKLTLF   79 (81)
T ss_pred             EEEeccHHHHHHHHhcCcceEEEEe
Confidence            9999874   444334444555553

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.52  E-value=0.033  Score=44.63  Aligned_cols=68  Identities=19%  Similarity=0.261  Sum_probs=49.1

Q ss_pred             EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618          175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM  254 (294)
Q Consensus       175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM  254 (294)
                      ||..-|..=-=-.+|.....+|+++++-|+.||....                            ..|+|-|.|.+||.+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~----------------------------~~f~i~Y~D~~gDLL   54 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPN----------------------------VDFLIGYTDPHGDLL   54 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCC----------------------------CcEEEEEeCCCCCEe
Confidence            5666666622224455556999999999999997421                            269999999999999


Q ss_pred             Ecc-CcchhHHhhhcee
Q 022618          255 LVG-DVPWEMFTDSCRR  270 (294)
Q Consensus       255 LVG-DVPWemFv~svKR  270 (294)
                      -+- |+-+..-+.++++
T Consensus        55 PInNDdNf~kAlssa~p   71 (80)
T cd06403          55 PINNDDNFLKALSSANP   71 (80)
T ss_pred             cccCcHHHHHHHHcCCC
Confidence            775 4566666667763

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.09  E-value=0.048  Score=43.98  Aligned_cols=51  Identities=22%  Similarity=0.328  Sum_probs=38.0

Q ss_pred             cccceeeecC--CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeEEcc
Q 022618          182 APYLRKVDLK--TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVG  257 (294)
Q Consensus       182 ~pIGRKVDL~--~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwMLVG  257 (294)
                      .|-||.+=++  ...||.+|.+++.+-|+....                         ....|.|.|.|.||||.|.-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~-------------------------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF-------------------------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc-------------------------cCCcccEEEEcCCCCEEEEe
Confidence            4567765554  478999999999999974210                         01369999999999999874

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.07  E-value=0.1  Score=42.17  Aligned_cols=59  Identities=24%  Similarity=0.468  Sum_probs=43.7

Q ss_pred             ceEEEEEcC---cccceeeec--CCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEE
Q 022618          173 LYVKVSMDG---APYLRKVDL--KTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYE  247 (294)
Q Consensus       173 ~fVKV~MdG---~pIGRKVDL--~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYE  247 (294)
                      +.||.+..|   .+=-|.+=|  ....+|++|...+.++|..  +                         .+..|+|.|.
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~--l-------------------------~~~~ftlky~   53 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS--L-------------------------RGKNFQLFWK   53 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc--c-------------------------CCCcEEEEEE
Confidence            367888777   333454444  6667999999999999963  1                         1247999999


Q ss_pred             cCCCCeEEccC
Q 022618          248 DKDGDWMLVGD  258 (294)
Q Consensus       248 DkEGDwMLVGD  258 (294)
                      |.|||..-+..
T Consensus        54 DeeGDlvtIss   64 (87)
T cd06402          54 DEEGDLVAFSS   64 (87)
T ss_pred             CCCCCEEeecC
Confidence            99999987765

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=94.95  E-value=0.093  Score=42.26  Aligned_cols=66  Identities=24%  Similarity=0.335  Sum_probs=51.1

Q ss_pred             EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618          175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM  254 (294)
Q Consensus       175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM  254 (294)
                      -||+-+|.  .|++-...-=+|.+|++.|+.+|....+                            .+.|||.|.|||..
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~~----------------------------~~~vtYiDeD~D~I   52 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPEI----------------------------KVGVTYIDNDNDEI   52 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCChh----------------------------HeEEEEEcCCCCEE
Confidence            48888887  8999988899999999999999984211                            38899999999987


Q ss_pred             EccC-cchhHHhhhcee
Q 022618          255 LVGD-VPWEMFTDSCRR  270 (294)
Q Consensus       255 LVGD-VPWemFv~svKR  270 (294)
                      -+-| .=.+.|..-..|
T Consensus        53 Tlssd~eL~d~~~~~~~   69 (82)
T cd06397          53 TLSSNKELQDFYRLSHR   69 (82)
T ss_pred             EecchHHHHHHHHhccc
Confidence            5544 555666554433

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.63  E-value=0.1  Score=42.09  Aligned_cols=55  Identities=20%  Similarity=0.355  Sum_probs=43.4

Q ss_pred             EEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeE
Q 022618          175 VKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWM  254 (294)
Q Consensus       175 VKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwM  254 (294)
                      ||++-.|.-.--.+|.  .-+|++|.+.+..||...                           .+..|++.|.|.|||--
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~---------------------------~~q~ft~kw~DEEGDp~   53 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH---------------------------NDQPFTLKWIDEEGDPC   53 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC---------------------------CCCcEEEEEECCCCCce
Confidence            7999999855555555  778999999999999741                           12369999999999987


Q ss_pred             EccC
Q 022618          255 LVGD  258 (294)
Q Consensus       255 LVGD  258 (294)
                      -+..
T Consensus        54 tiSS   57 (83)
T cd06404          54 TISS   57 (83)
T ss_pred             eecC
Confidence            6654

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=89.34  E-value=1.4  Score=35.72  Aligned_cols=65  Identities=22%  Similarity=0.395  Sum_probs=51.4

Q ss_pred             ceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618          173 LYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD  252 (294)
Q Consensus       173 ~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD  252 (294)
                      .-|||+-.|.  .|-|-+..--+|++|...+..+|..     .                        ..+.|-|.|. ||
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-----~------------------------~~~~iKykDE-GD   50 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-----K------------------------RRLKIKMKDD-GD   50 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-----C------------------------CceEEEEEcC-CC
Confidence            4589999898  6777777788899999999999973     1                        2589999999 99


Q ss_pred             eEEccCc-chhHHhhhce
Q 022618          253 WMLVGDV-PWEMFTDSCR  269 (294)
Q Consensus       253 wMLVGDV-PWemFv~svK  269 (294)
                      ..-++|- =-++-+.++|
T Consensus        51 ~iti~sq~DLd~Ai~~a~   68 (86)
T cd06408          51 MITMGDQDDLDMAIDTAR   68 (86)
T ss_pred             CccccCHHHHHHHHHHHH
Confidence            9988873 4455555555

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 77/281 (27%)

Query: 24  ERGSDKNGNAAVILSLKSFVGSGAKRVFCDATDADAKWVFS-VSEAAAGRLFSPRGGGSS 82
                 +G   +  +L S      ++   +    + K++ S +           R     
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 83  NNNNNNHGKVHVGSDSGLGGPVLEDGNGACVAAQSPKPVMMVQDKKSHEIAPSKAQVV-- 140
            +   N               V    N   V     +P + ++ +   E+ P+K  ++  
Sbjct: 116 RDRLYN------------DNQVFAKYN---V--SRLQPYLKLR-QALLELRPAKNVLIDG 157

Query: 141 ----GWPPIRSYRKNTMSSQSSKNDDDSEAKLGLGCLYVKVSMDGAPYLRKVDLKTYSSY 196
               G        K  ++     +              V+  MD   +   ++LK  +S 
Sbjct: 158 VLGSG--------KTWVALDVCLSYK------------VQCKMDFKIFW--LNLKNCNSP 195

Query: 197 IDLSSALEKMFSCFTIVSGQCS----SHNVPSRDGLSESRLMDLLHGSEY-----VLTYE 247
             +   L+K+   + I     S    S N+  R    ++ L  LL    Y     VL   
Sbjct: 196 ETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--- 250

Query: 248 DKDGDWMLVGDV----PWEMFTDSCRRL---RIMKSSDAIG 281
                     +V     W  F  SC+ L   R  + +D + 
Sbjct: 251 ----L-----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.64
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.49
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.18
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	94.39
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	92.74
1pqs_A	77	Cell division control protein 24; alpha and beta p	82.7
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	81.8

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.64  E-value=0.0069  Score=47.76  Aligned_cols=72  Identities=18%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             CCcceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcC
Q 022618          170 LGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDK  249 (294)
Q Consensus       170 ~~~~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDk  249 (294)
                      .+.+-||..-|..--=-.+|-....+|++|..-|+++|...                            ...|++.|.|.
T Consensus         4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~----------------------------~~~f~i~Y~D~   55 (86)
T 1wmh_B            4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP----------------------------GLDVLLGYTDA   55 (86)
T ss_dssp             -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT----------------------------TCCCEEEEECT
T ss_pred             CCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC----------------------------CCCEEEEEECC
Confidence            45678899999883333455567789999999999999731                            12699999999


Q ss_pred             CCCeEEccC-cchhHHhhhce
Q 022618          250 DGDWMLVGD-VPWEMFTDSCR  269 (294)
Q Consensus       250 EGDwMLVGD-VPWemFv~svK  269 (294)
                      |||++-+-+ .=..+-+.++|
T Consensus        56 dGDLlpInnDdnl~~Al~~a~   76 (86)
T 1wmh_B           56 HGDLLPLTNDDSLHRALASGP   76 (86)
T ss_dssp             TSCEEECCSHHHHHHHTTSSS
T ss_pred             CCCEeeecCHHHHHHHHHhCC
Confidence            999998765 45566666777

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.49  E-value=0.038  Score=43.50  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=44.6

Q ss_pred             CcceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCC
Q 022618          171 GCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKD  250 (294)
Q Consensus       171 ~~~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkE  250 (294)
                      +.+=|||+-.|.-  |.+.+...-+|++|...|..+|...                           .+..+++.|.|.|
T Consensus         5 ~~vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~~~---------------------------~~~~f~lky~DEe   55 (89)
T 1vd2_A            5 SQVRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCSFD---------------------------NEQLFTMKWIDEE   55 (89)
T ss_dssp             SCEEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTTCC---------------------------SSCCEEEEECCSS
T ss_pred             CeEEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhCCC---------------------------CCCeEEEEEECCC
Confidence            4578899999984  4555555679999999999999731                           1236999999999


Q ss_pred             CCeEEcc
Q 022618          251 GDWMLVG  257 (294)
Q Consensus       251 GDwMLVG  257 (294)
                      ||+.-+-
T Consensus        56 GD~itis   62 (89)
T 1vd2_A           56 GDPCTVS   62 (89)
T ss_dssp             SCCEECC
T ss_pred             CCccccc
Confidence            9987654

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.18  E-value=0.035  Score=44.72  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=49.0

Q ss_pred             cceEEEEEcCc----ccceeeecCC-----------CCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhcc
Q 022618          172 CLYVKVSMDGA----PYLRKVDLKT-----------YSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDL  236 (294)
Q Consensus       172 ~~fVKV~MdG~----pIGRKVDL~~-----------~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dl  236 (294)
                      ++-||++..|.    .=-|.+=|..           ..+|++|...++++|...                          
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l--------------------------   58 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL--------------------------   58 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS--------------------------
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc--------------------------
Confidence            56789998762    2345555532           248999999999999731                          


Q ss_pred             CCCCceEEEEEcCCCCeEEccCc-chhHHhhhce
Q 022618          237 LHGSEYVLTYEDKDGDWMLVGDV-PWEMFTDSCR  269 (294)
Q Consensus       237 l~gseyvLtYEDkEGDwMLVGDV-PWemFv~svK  269 (294)
                       .+..|.|.|.|.|||+.-+-+. =-.+-+.+++
T Consensus        59 -~~~~f~l~Y~DedGDlItiSsDeEL~~Al~~~~   91 (102)
T 2kkc_A           59 -RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK   91 (102)
T ss_dssp             -CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred             -CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence             1347999999999999877663 3334444433

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=94.39  E-value=0.084  Score=43.63  Aligned_cols=72  Identities=18%  Similarity=0.247  Sum_probs=49.4

Q ss_pred             CcceEEEEEcCc----ccceeeecC-----------CCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhc
Q 022618          171 GCLYVKVSMDGA----PYLRKVDLK-----------TYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMD  235 (294)
Q Consensus       171 ~~~fVKV~MdG~----pIGRKVDL~-----------~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~d  235 (294)
                      .++-||++..|.    .=-|++=|.           .-.+|++|...++++|...                         
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-------------------------   73 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-------------------------   73 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-------------------------
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-------------------------
Confidence            468999999752    224555553           1359999999999999631                         


Q ss_pred             cCCCCceEEEEEcCCCCeEEccCc-chhHHhhhce
Q 022618          236 LLHGSEYVLTYEDKDGDWMLVGDV-PWEMFTDSCR  269 (294)
Q Consensus       236 ll~gseyvLtYEDkEGDwMLVGDV-PWemFv~svK  269 (294)
                        .+..|.|.|.|.|||+.-+-.. =..+-+.+++
T Consensus        74 --~~~~f~l~YkDEdGDlItISsDeEL~~Al~~~~  106 (117)
T 2ktr_A           74 --RPGGFQAHYRAERGDLVAFSSDEELTMAMSYVK  106 (117)
T ss_dssp             --CSSCEEEEEECTTCCEEEECSHHHHHHHHHHCC
T ss_pred             --CCCcEEEEEECCCCCEEEecCHHHHHHHHHhcC
Confidence              1347999999999998877653 3344444443

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=92.74  E-value=0.38  Score=38.65  Aligned_cols=76  Identities=17%  Similarity=0.386  Sum_probs=55.1

Q ss_pred             CcceEEEEEcCcc----c--ceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEE
Q 022618          171 GCLYVKVSMDGAP----Y--LRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVL  244 (294)
Q Consensus       171 ~~~fVKV~MdG~p----I--GRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvL  244 (294)
                      ++.-|||+-+...    +  .|.|=+..--+|++|...+.+-|..+.   +.         + .          .....|
T Consensus         4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~---~~---------~-i----------~~~~kl   60 (98)
T 1q1o_A            4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH---NN---------N-I----------SPITKI   60 (98)
T ss_dssp             SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC---SS---------C-C----------CCCCCE
T ss_pred             ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc---cc---------c-c----------cceeEE
Confidence            4577888877421    2  366767788899999999999997421   00         0 0          014679


Q ss_pred             EEEcCCCCeEEccC-cchhHHhhhce
Q 022618          245 TYEDKDGDWMLVGD-VPWEMFTDSCR  269 (294)
Q Consensus       245 tYEDkEGDwMLVGD-VPWemFv~svK  269 (294)
                      -|+|.|||+...++ .=|+|-+.+++
T Consensus        61 kYkDEdGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           61 KYQDEDGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             EEECSSSCEEEECSHHHHHHHHHHHH
T ss_pred             EEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            99999999988876 68999988874

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=82.70  E-value=1.3  Score=33.76  Aligned_cols=57  Identities=21%  Similarity=0.438  Sum_probs=41.2

Q ss_pred             cCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeEEccC-cchhHHhhhc
Q 022618          190 LKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD-VPWEMFTDSC  268 (294)
Q Consensus       190 L~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv~sv  268 (294)
                      ...--+|++|...+.+-|..+       .+.+      .          .....|-|+|.|||+...++ .=|+|-+.++
T Consensus         8 V~~~i~f~~L~~kI~~kl~~~-------~~~~------~----------~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~   64 (77)
T 1pqs_A            8 VEKVWNFDDLIMAINSKISNT-------HNNN------I----------SPITKIKYQDEDGDFVVLGSDEDWNVAKEML   64 (77)
T ss_dssp             CTTCCCSHHHHHHHHHHTTTT-------TSSC------S----------CSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHccc-------cccc------c----------cceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence            445568999999999988632       0000      0          12567999999999987765 6899998887


Q ss_pred             e
Q 022618          269 R  269 (294)
Q Consensus       269 K  269 (294)
                      |
T Consensus        65 ~   65 (77)
T 1pqs_A           65 A   65 (77)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=81.80  E-value=1.9  Score=35.19  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=33.0

Q ss_pred             ecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeEEccC
Q 022618          189 DLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD  258 (294)
Q Consensus       189 DL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwMLVGD  258 (294)
                      ||+..-.|.+|..-..+-|..+                              +-.|-|.|.|||+.-+=|
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~------------------------------DIaLNYrD~eGDLIrild   67 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE------------------------------DIALNYRDAEGDLVRLLS   67 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS------------------------------SEEEEEECTTSCEEECCS
T ss_pred             ccccCCCHHHHHHHHHHHhccc------------------------------ceeeeeecCCCCEEEEcc
Confidence            6788889999999999999742                              456899999999976544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.65
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.68
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	87.24

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0017  Score=49.26  Aligned_cols=66  Identities=11%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             ceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCC
Q 022618          173 LYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGD  252 (294)
Q Consensus       173 ~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGD  252 (294)
                      .-|||+..|..+=-+|-+....+|.+|...|.+.|..                              ..+.|.|.|.|+|
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l------------------------------~~~~lkY~Ddd~e   54 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------------NTIQIKYLDEENE   54 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC------------------------------SSEEEEEECTTSC
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc------------------------------ccceEEEEcCCCC
Confidence            4589999888655567777888999999999999962                              1377999999999


Q ss_pred             eEEcc-CcchhHHhhhc
Q 022618          253 WMLVG-DVPWEMFTDSC  268 (294)
Q Consensus       253 wMLVG-DVPWemFv~sv  268 (294)
                      |.++. |.=.++.+..+
T Consensus        55 ~v~l~~d~dl~E~~~~a   71 (85)
T d2bkfa1          55 EVSINSQGEYEEALKMA   71 (85)
T ss_dssp             EEEECSHHHHHHHHHHH
T ss_pred             EEEEecHHHHHHHHHHH
Confidence            98775 44555555544

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0092  Score=44.16  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=53.7

Q ss_pred             CCcceEEEEEcCcccceeeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcC
Q 022618          170 LGCLYVKVSMDGAPYLRKVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDK  249 (294)
Q Consensus       170 ~~~~fVKV~MdG~pIGRKVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDk  249 (294)
                      .++.-|||+..+.  -|.+=|..--+|.+|...+.+.|..     +                         .++|-|+|.
T Consensus        10 ~~~ikVKv~~~~D--~~~~~l~~~it~~dL~~kI~~rf~~-----~-------------------------~~~lkY~De   57 (85)
T d1ip9a_          10 LKTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDT-----D-------------------------NFKLQTKLF   57 (85)
T ss_dssp             CCCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTS-----S-------------------------CEEEEECCS
T ss_pred             CCCEEEEEEECCc--EEEEEeCCCCCHHHHHHHHHHHhCC-----C-------------------------ceEEEEEcC
Confidence            4567899999988  4555556668899999999999962     1                         488999999


Q ss_pred             CCCeEEccC-cchhHHhhhceeeEE
Q 022618          250 DGDWMLVGD-VPWEMFTDSCRRLRI  273 (294)
Q Consensus       250 EGDwMLVGD-VPWemFv~svKRLrI  273 (294)
                      ||||..+-+ .=+++-++...||.+
T Consensus        58 dgd~v~i~sD~Dl~~ai~~~~kl~v   82 (85)
T d1ip9a_          58 DGSGEEIKTDSQVSNIIQAKLKISV   82 (85)
T ss_dssp             SSCCSCCCSHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEeCHHHHHHHHHhcCcEEE
Confidence            999986654 456666665555543

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.24  E-value=0.64  Score=34.59  Aligned_cols=55  Identities=18%  Similarity=0.236  Sum_probs=42.9

Q ss_pred             eeecCCCCChHHHHHHHHHhhcccccccccCCCCCCCCCCCcchhhhhccCCCCceEEEEEcCCCCeEEccC-cchhHHh
Q 022618          187 KVDLKTYSSYIDLSSALEKMFSCFTIVSGQCSSHNVPSRDGLSESRLMDLLHGSEYVLTYEDKDGDWMLVGD-VPWEMFT  265 (294)
Q Consensus       187 KVDL~~~~sY~eLs~aLe~MF~~~~i~~g~~~s~~~~~~d~~~e~~l~dll~gseyvLtYEDkEGDwMLVGD-VPWemFv  265 (294)
                      .+|.....+|++.+.-|++|-...                            ..+++|.|.|.+||.+-+-. .-+.--+
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l~----------------------------~~~f~i~Y~D~hgDLLPINNDdNf~kA~   68 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQIP----------------------------GLDVLLGYTDAHGDLLPLTNDDSLHRAL   68 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTCT----------------------------TCCCEEEEECTTSCEEECCSHHHHHHHT
T ss_pred             eeccccccCHHHHHHHHHHHcCCC----------------------------CCcEEEEEecCCCCcccccCchHHHHHH
Confidence            577788899999999999987631                            13799999999999998754 4555556


Q ss_pred             hhce
Q 022618          266 DSCR  269 (294)
Q Consensus       266 ~svK  269 (294)
                      .+++
T Consensus        69 ~sa~   72 (82)
T d1wmhb_          69 ASGP   72 (82)
T ss_dssp             TSSS
T ss_pred             HhcC
Confidence            6666