Citrus Sinensis ID: 022634

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MEANSFLSGSTIPLIQTPRKLPSLSFAQSHSHLSASFRAHKLLVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKENPDEFS
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHccccccccccccccccEEEEEEEcccHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHccccEEEEccccccccHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEEEcccccccccc
cHHHHHHcccccccccccccccccccccccccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHccccccccccccccEEEEEEEccccHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEHHHHHHccHHHHHHHcccEEEccccHcccccccccccHHHHHHHHHcccEEEEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEEccccccccccc
meansflsgstipliqtprklpslsfaqshshlSASFRAHKllvpqslrssrrlECVNFAEKVKnngdkyekdfdsgikkkNLAVFvsgggsnfrSIHAACLAGSVYGDVVVLVTnkpdcggaeyardnsipvilfpktkdepnglspnDLVAALSEVNVDFILLAGYLKLIPMelirayprsivnihpsllpafggkgyygmKVHKAVIasgarysgptihfvdehydtgriLAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVvwredgvpvirskenpdefs
meansflsgstipliqtpRKLPSLSFAQSHSHLSASFRAHKLLVpqslrssrrlecvnfaekvknngdkyekdfdsgikKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASAlceervvwredgvpvirskenpdefs
MEANSFLSGSTIPLIQTPRKLPSLSFAQSHSHLSASFRAHKLLVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKENPDEFS
*****************************************LL*********RLECVNFAEKVK*****YEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK**********NDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVI**********
**********************************************************************************LAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVI**********
********GSTIPLIQTPRKLPSLSFAQSHSHLSASFRAHKLLVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKENPDEFS
********GSTIPLIQTPRKLPSLSFAQSHSHLSASFRAHKLLVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSK*******
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MEANSFLSGSTIPLIQTPRKLPSLSFAQSHSHLSASFRAHKLLVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKENPDEFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
P52423312 Phosphoribosylglycinamide N/A no 0.996 0.939 0.610 1e-102
P52422292 Phosphoribosylglycinamide yes no 0.731 0.736 0.708 9e-89
Q42805295 Phosphoribosylglycinamide no no 0.802 0.8 0.600 3e-76
P43846212 Phosphoribosylglycinamide yes no 0.656 0.910 0.33 6e-26
P009671353 Trifunctional purine bios yes no 0.598 0.130 0.349 5e-25
Q647371010 Trifunctional purine bios yes no 0.765 0.222 0.297 3e-24
Q59A321010 Trifunctional purine bios yes no 0.710 0.206 0.301 5e-24
P163401364 Trifunctional purine bios yes no 0.595 0.128 0.346 1e-23
P218721003 Trifunctional purine bios yes no 0.710 0.208 0.308 2e-23
P12040195 Phosphoribosylglycinamide yes no 0.625 0.943 0.359 2e-23
>sp|P52423|PUR3_VIGUN Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Vigna unguiculata GN=PUR3 PE=2 SV=2 Back     alignment and function desciption
 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/311 (61%), Positives = 226/311 (72%), Gaps = 18/311 (5%)

Query: 1   MEANSFLS--------GSTIPLIQTP--------RKLPSLSFAQSHS--HLSASFRAHKL 42
           MEA   +S          +IP+++ P          L S  F QS +    + +  A   
Sbjct: 1   MEAQQIISRFCPKSSLAPSIPMVKQPFSLNFPPLHSLSSYPFLQSQNLGFPTGALHAISF 60

Query: 43  LVPQSLRSSRRLECVNFAEKVKNNGDKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACL 102
           +  +   SS R+ C   +       + +E      +++K LAVFVSGGGSNFRSIH A  
Sbjct: 61  VHKEVCSSSWRIWCSKSSSSTAEPEEDHEVRAQVTVRRKKLAVFVSGGGSNFRSIHEASK 120

Query: 103 AGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDF 162
            GS++GDV VLVTNK +CGGA+YAR+N IPVILFPK KDEP GLSP DLV  L +  VDF
Sbjct: 121 KGSLHGDVTVLVTNKSECGGAQYARNNGIPVILFPKAKDEPKGLSPCDLVDTLRKFEVDF 180

Query: 163 ILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIH 222
           +LLAGYLKLIP+ELIRA+ RSI NIHPSLLPAFGGKGYYGMKVHKAVIASGAR+SGPTIH
Sbjct: 181 VLLAGYLKLIPVELIRAFERSIFNIHPSLLPAFGGKGYYGMKVHKAVIASGARFSGPTIH 240

Query: 223 FVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVP 282
           FVDEHYDTGRILAQRVVPVL NDTAE+LAARVL EEH+LYV+V  ALCEER+VWR+DGVP
Sbjct: 241 FVDEHYDTGRILAQRVVPVLANDTAEELAARVLNEEHQLYVEVVEALCEERIVWRKDGVP 300

Query: 283 VIRSKENPDEF 293
           +I+S+ENP+EF
Sbjct: 301 LIQSRENPNEF 311

Vigna unguiculata (taxid: 3917)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 2
>sp|P52422|PUR3_ARATH Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PUR3 PE=2 SV=2 Back     alignment and function description
>sp|Q42805|PUR3_SOYBN Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Glycine max GN=PUR3 PE=2 SV=1 Back     alignment and function description
>sp|P43846|PUR3_HAEIN Phosphoribosylglycinamide formyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purN PE=3 SV=1 Back     alignment and function description
>sp|P00967|PUR2_DROME Trifunctional purine biosynthetic protein adenosine-3 OS=Drosophila melanogaster GN=ade3 PE=1 SV=2 Back     alignment and function description
>sp|Q64737|PUR2_MOUSE Trifunctional purine biosynthetic protein adenosine-3 OS=Mus musculus GN=Gart PE=2 SV=3 Back     alignment and function description
>sp|Q59A32|PUR2_BOVIN Trifunctional purine biosynthetic protein adenosine-3 OS=Bos taurus GN=GART PE=2 SV=1 Back     alignment and function description
>sp|P16340|PUR2_DROPS Trifunctional purine biosynthetic protein adenosine-3 OS=Drosophila pseudoobscura pseudoobscura GN=ade3 PE=3 SV=2 Back     alignment and function description
>sp|P21872|PUR2_CHICK Trifunctional purine biosynthetic protein adenosine-3 OS=Gallus gallus GN=GART PE=2 SV=1 Back     alignment and function description
>sp|P12040|PUR3_BACSU Phosphoribosylglycinamide formyltransferase OS=Bacillus subtilis (strain 168) GN=purN PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
359497537300 PREDICTED: phosphoribosylglycinamide for 0.989 0.97 0.702 1e-112
224102751302 glycinamide ribonucleotide transformylas 0.979 0.953 0.659 1e-105
255576276301 phosphoribosylamine-glycine ligase, puta 0.996 0.973 0.668 1e-105
12644307312 RecName: Full=Phosphoribosylglycinamide 0.996 0.939 0.610 1e-100
449447894293 PREDICTED: phosphoribosylglycinamide for 0.734 0.737 0.768 9e-96
37992753305 glycinamide ribonucleotide transformylas 0.863 0.832 0.662 1e-95
351723795312 phosphoribosylglycinamide formyltransfer 0.819 0.772 0.709 1e-94
356560827316 PREDICTED: phosphoribosylglycinamide for 0.724 0.674 0.791 2e-94
255647722312 unknown [Glycine max] 0.819 0.772 0.704 4e-94
32815065312 glycinamide ribonucleotide transformylas 0.819 0.772 0.709 4e-94
>gi|359497537|ref|XP_002264133.2| PREDICTED: phosphoribosylglycinamide formyltransferase, chloroplastic [Vitis vinifera] gi|296088222|emb|CBI35737.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/303 (70%), Positives = 243/303 (80%), Gaps = 12/303 (3%)

Query: 1   MEA----NSFLSGSTIPLIQTPRKLPSLSFAQS--HSHLSASFRAHKLLVPQSLR-SSRR 53
           MEA    + F S S IP I+ P+K   + F  S  HS   ASF+ H    PQ++  S RR
Sbjct: 1   MEAQRLLHGFCSNSAIPPIRNPKKPFFMIFNPSLDHSKRWASFKTHHYDAPQTVSWSKRR 60

Query: 54  LECVNFAEKVKNNG--DKYEKDFDSGIKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVV 111
           LEC N    V+N G     EK  +SGI++KNLAVFVSGGGSNFRSIH ACL GSV+GD+V
Sbjct: 61  LECRN---SVENAGGFTGGEKGLESGIRRKNLAVFVSGGGSNFRSIHEACLRGSVHGDIV 117

Query: 112 VLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKL 171
           VL TNK  CGGAEYAR   IPVILFPK KDEP  LSPNDLVAAL    VDFILLAGYLKL
Sbjct: 118 VLATNKSGCGGAEYARGKGIPVILFPKAKDEPEALSPNDLVAALRGFEVDFILLAGYLKL 177

Query: 172 IPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTG 231
           IP+ELIRAYP+SI+NIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPT+HFVDEHYDTG
Sbjct: 178 IPVELIRAYPKSILNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTVHFVDEHYDTG 237

Query: 232 RILAQRVVPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKENPD 291
           RILAQRVVPVL +DTA++LAARVL +EHR+YV+V SALC+ER+VWREDGVP+I+SKENP+
Sbjct: 238 RILAQRVVPVLADDTADELAARVLHQEHRVYVEVTSALCDERIVWREDGVPIIQSKENPN 297

Query: 292 EFS 294
           ++S
Sbjct: 298 DYS 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102751|ref|XP_002334132.1| glycinamide ribonucleotide transformylase [Populus trichocarpa] gi|222869679|gb|EEF06810.1| glycinamide ribonucleotide transformylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255576276|ref|XP_002529031.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] gi|223531511|gb|EEF33342.1| phosphoribosylamine-glycine ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|12644307|sp|P52423.2|PUR3_VIGUN RecName: Full=Phosphoribosylglycinamide formyltransferase, chloroplastic; AltName: Full=5'-phosphoribosylglycinamide transformylase; AltName: Full=GAR transformylase; Short=GART; Flags: Precursor gi|25990313|gb|AAD45353.2|AF160196_1 glycinamide ribonucleotide transformylase [Vigna unguiculata] gi|27777702|gb|AAA75367.2| glycinamide ribonucleotide transformylase [Vigna unguiculata] gi|27922943|gb|AAO25114.1| glycinamide ribonucleotide transformylase [Vigna unguiculata] gi|27922945|gb|AAO25115.1| glycinamide ribonucleotide transformylase [Vigna unguiculata] Back     alignment and taxonomy information
>gi|449447894|ref|XP_004141701.1| PREDICTED: phosphoribosylglycinamide formyltransferase, chloroplastic-like [Cucumis sativus] gi|449480524|ref|XP_004155920.1| PREDICTED: phosphoribosylglycinamide formyltransferase, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|37992753|gb|AAR06583.1| glycinamide ribonucleotide transformylase [Solanum tuberosum] Back     alignment and taxonomy information
>gi|351723795|ref|NP_001238059.1| phosphoribosylglycinamide formyltransferase, chloroplastic [Glycine max] gi|32815066|gb|AAP86248.2| glycinamide ribonucleotide transformylase [Glycine max] Back     alignment and taxonomy information
>gi|356560827|ref|XP_003548688.1| PREDICTED: phosphoribosylglycinamide formyltransferase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255647722|gb|ACU24322.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|32815065|gb|AAP86247.2| glycinamide ribonucleotide transformylase [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
TAIR|locus:2029554292 AT1G31220 [Arabidopsis thalian 0.731 0.736 0.708 4.5e-82
TIGR_CMR|CHY_1077209 CHY_1077 "phosphoribosylglycin 0.639 0.899 0.394 4.4e-29
TIGR_CMR|BA_0297195 BA_0297 "phosphoribosylglycina 0.625 0.943 0.370 5e-28
TIGR_CMR|GSU_1759206 GSU_1759 "phosphoribosylglycin 0.636 0.907 0.348 1.5e-26
UNIPROTKB|Q9KPY5212 VC_2227 "Phosphoribosylglycina 0.656 0.910 0.328 2.9e-25
TIGR_CMR|VC_2227212 VC_2227 "phosphoribosylglycina 0.656 0.910 0.328 2.9e-25
TIGR_CMR|CPS_3197213 CPS_3197 "phosphoribosylglycin 0.649 0.896 0.318 4.6e-25
TIGR_CMR|NSE_0474192 NSE_0474 "phosphoribosylglycin 0.574 0.880 0.347 1.6e-24
UNIPROTKB|P08179212 purN [Escherichia coli K-12 (t 0.656 0.910 0.303 1.4e-23
UNIPROTKB|I3LH111013 GART "Uncharacterized protein" 0.744 0.216 0.327 1.4e-23
TAIR|locus:2029554 AT1G31220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 153/216 (70%), Positives = 184/216 (85%)

Query:    79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138
             ++K LAVFVSGGGSNFR IH  C  GSV GDVV+LVTNK DCGGAEYAR N IPV++FPK
Sbjct:    76 RRKKLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNKKDCGGAEYARSNGIPVLVFPK 135

Query:   139 TKDEPN-GLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGG 197
              K EP+ GLSP++LV  L +  VDF+LLAGYLKLIP+EL++A+P+ I+NIHP+LLPAFGG
Sbjct:   136 AKREPSDGLSPSELVDVLRKYGVDFVLLAGYLKLIPVELVQAFPKRILNIHPALLPAFGG 195

Query:   198 KGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLE 257
             KG YG+KVHKAV+ SGARYSGPTIHFV+E YDTGRILAQ  V V+ NDT E+LA RVL E
Sbjct:   196 KGLYGIKVHKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTPEELAKRVLHE 255

Query:   258 EHRLYVDVASALCEERVVWREDGVPVIRSKENPDEF 293
             EH+LYV+V  A+CEER+ WREDGVP+I++K+NPDE+
Sbjct:   256 EHKLYVEVVGAICEERIKWREDGVPLIQNKQNPDEY 291
GO:0004644 "phosphoribosylglycinamide formyltransferase activity" evidence=IEA;IGI
GO:0006189 "'de novo' IMP biosynthetic process" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0008864 "formyltetrahydrofolate deformylase activity" evidence=ISS
GO:0009058 "biosynthetic process" evidence=IEA;ISS
GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IGI;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA;ISS
TIGR_CMR|CHY_1077 CHY_1077 "phosphoribosylglycinamide formyltransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0297 BA_0297 "phosphoribosylglycinamide formyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1759 GSU_1759 "phosphoribosylglycinamide formyltransferase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPY5 VC_2227 "Phosphoribosylglycinamide formyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2227 VC_2227 "phosphoribosylglycinamide formyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3197 CPS_3197 "phosphoribosylglycinamide formyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0474 NSE_0474 "phosphoribosylglycinamide formyltransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
UNIPROTKB|P08179 purN [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|I3LH11 GART "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P52423PUR3_VIGUN2, ., 1, ., 2, ., 20.61090.99650.9391N/Ano
P52422PUR3_ARATH2, ., 1, ., 2, ., 20.70830.73120.7363yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.20.976
4th Layer2.1.2.20.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011727001
SubName- Full=Chromosome undetermined scaffold_332, whole genome shotgun sequence; (300 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00000242001
SubName- Full=Chromosome chr12 scaffold_103, whole genome shotgun sequence; (461 aa)
•••• •• 0.998
GSVIVG00008008001
SubName- Full=Chromosome undetermined scaffold_1178, whole genome shotgun sequence; (352 aa)
• •• •• 0.997
GSVIVG00024726001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (594 aa)
•    •• 0.979
GSVIVG00028078001
RecName- Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; (331 aa)
•••• •• 0.971
GSVIVG00020961001
RecName- Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; (333 aa)
•••• •• 0.970
GSVIVG00035979001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (582 aa)
•  •  • 0.963
GSVIVG00007436001
SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (123 aa)
•  •  • 0.955
GSVIVG00010970001
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (408 aa)
     •• 0.931
GSVIVG00000050001
SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (287 aa)
     •• 0.925
GSVIVG00032161001
RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (428 aa)
•    •• 0.923

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
PLN02331207 PLN02331, PLN02331, phosphoribosylglycinamide form 1e-145
cd08645183 cd08645, FMT_core_GART, Phosphoribosylglycinamide 9e-81
COG0299200 COG0299, PurN, Folate-dependent phosphoribosylglyc 3e-68
PRK05647200 PRK05647, purN, phosphoribosylglycinamide formyltr 2e-66
pfam00551181 pfam00551, Formyl_trans_N, Formyl transferase 4e-61
TIGR00639190 TIGR00639, PurN, phosphoribosylglycinamide formylt 1e-50
cd08369173 cd08369, FMT_core, Formyltransferase, catalytic co 4e-29
cd08648196 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formylte 6e-26
COG0223307 COG0223, Fmt, Methionyl-tRNA formyltransferase [Tr 3e-21
TIGR00655280 TIGR00655, PurU, formyltetrahydrofolate deformylas 2e-20
COG0788287 COG0788, PurU, Formyltetrahydrofolate hydrolase [N 7e-20
cd08646204 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA f 9e-20
cd08651180 cd08651, FMT_core_like_4, Formyl transferase catal 3e-16
PRK00005 309 PRK00005, fmt, methionyl-tRNA formyltransferase; R 5e-16
PRK06988 312 PRK06988, PRK06988, putative formyltransferase; Pr 4e-15
PRK13011286 PRK13011, PRK13011, formyltetrahydrofolate deformy 7e-15
TIGR00460 313 TIGR00460, fmt, methionyl-tRNA formyltransferase 8e-15
PRK06027286 PRK06027, purU, formyltetrahydrofolate deformylase 2e-14
cd08644203 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formylt 5e-14
PRK13010289 PRK13010, purU, formyltetrahydrofolate deformylase 2e-12
PLN02828268 PLN02828, PLN02828, formyltetrahydrofolate deformy 2e-12
cd08647203 cd08647, FMT_core_FDH_N, 10-formyltetrahydrofolate 3e-10
cd08653152 cd08653, FMT_core_like_3, Formyl transferase catal 1e-09
cd08822192 cd08822, FMT_core_like_2, Formyl transferase catal 3e-09
PLN02285 334 PLN02285, PLN02285, methionyl-tRNA formyltransfera 1e-08
cd08649166 cd08649, FMT_core_NRPS_like, N-terminal formyl tra 7e-08
PRK08125 660 PRK08125, PRK08125, bifunctional UDP-glucuronic ac 5e-06
cd08823177 cd08823, FMT_core_like_5, Formyl transferase catal 4e-05
cd08820173 cd08820, FMT_core_like_6, Formyl transferase catal 4e-05
PRK07579245 PRK07579, PRK07579, hypothetical protein; Provisio 4e-04
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase Back     alignment and domain information 
 Score =  406 bits (1045), Expect = e-145
 Identities = 167/207 (80%), Positives = 189/207 (91%)

Query: 82  NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
            LAVFVSGGGSNFR+IH ACL G V GDVVV+VTNKP CGGAEYAR+N IPV+++PKTK 
Sbjct: 1   KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKG 60

Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
           EP+GLSP++LV AL    VDF+LLAGYLKLIP+EL+RAYPRSI+NIHP+LLPAFGGKGYY
Sbjct: 61  EPDGLSPDELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYY 120

Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRL 261
           G+KVHKAVIASGARYSGPT+HFVDEHYDTGRILAQRVVPVL  DT E+LAARVL EEH+L
Sbjct: 121 GIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPVLATDTPEELAARVLHEEHQL 180

Query: 262 YVDVASALCEERVVWREDGVPVIRSKE 288
           YV+V +ALCEER+VWREDGVP+IRSKE
Sbjct: 181 YVEVVAALCEERIVWREDGVPLIRSKE 207

Length = 207
>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART) Back     alignment and domain information
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase Back     alignment and domain information
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain Back     alignment and domain information
>gnl|CDD|187717 cd08648, FMT_core_Formyl-FH4-Hydrolase_C, Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|223301 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|233074 TIGR00655, PurU, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|223859 COG0788, PurU, Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|187715 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA formyltransferase, N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|187720 cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|235902 PRK06988, PRK06988, putative formyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|237266 PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|235676 PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|187713 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formyltransferase domain Back     alignment and domain information
>gnl|CDD|139334 PRK13010, purU, formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>gnl|CDD|178422 PLN02828, PLN02828, formyltetrahydrofolate deformylase Back     alignment and domain information
>gnl|CDD|187716 cd08647, FMT_core_FDH_N, 10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|187721 cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187724 cd08822, FMT_core_like_2, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|187718 cd08649, FMT_core_NRPS_like, N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin Back     alignment and domain information
>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>gnl|CDD|187725 cd08823, FMT_core_like_5, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187722 cd08820, FMT_core_like_6, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|236058 PRK07579, PRK07579, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
PLN02331207 phosphoribosylglycinamide formyltransferase 100.0
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 100.0
TIGR00655280 PurU formyltetrahydrofolate deformylase. This mode 100.0
PRK13010289 purU formyltetrahydrofolate deformylase; Reviewed 100.0
PRK06027286 purU formyltetrahydrofolate deformylase; Reviewed 100.0
KOG3076206 consensus 5'-phosphoribosylglycinamide formyltrans 100.0
PLN02828268 formyltetrahydrofolate deformylase 100.0
PRK13011286 formyltetrahydrofolate deformylase; Reviewed 100.0
TIGR00639190 PurN phosphoribosylglycinamide formyltransferase, 100.0
PRK05647200 purN phosphoribosylglycinamide formyltransferase; 100.0
PF00551181 Formyl_trans_N: Formyl transferase; InterPro: IPR0 100.0
PLN02285 334 methionyl-tRNA formyltransferase 100.0
COG0223307 Fmt Methionyl-tRNA formyltransferase [Translation, 100.0
PRK06988 312 putative formyltransferase; Provisional 100.0
COG0788287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 100.0
PRK00005 309 fmt methionyl-tRNA formyltransferase; Reviewed 100.0
TIGR00460 313 fmt methionyl-tRNA formyltransferase. The top-scor 100.0
PRK08125 660 bifunctional UDP-glucuronic acid decarboxylase/UDP 100.0
PRK07579245 hypothetical protein; Provisional 100.0
KOG3082 338 consensus Methionyl-tRNA formyltransferase [Transl 99.92
KOG2452 881 consensus Formyltetrahydrofolate dehydrogenase [Nu 99.85
COG2102223 Predicted ATPases of PP-loop superfamily [General 93.99
TIGR00290223 MJ0570_dom MJ0570-related uncharacterized domain. 93.03
PF01902218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 92.85
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 91.39
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 91.13
PRK08300302 acetaldehyde dehydrogenase; Validated 89.63
PF01408120 GFO_IDH_MocA: Oxidoreductase family, NAD-binding R 89.21
KOG3857 465 consensus Alcohol dehydrogenase, class IV [Energy 89.19
TIGR03215285 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati 86.78
PF00185158 OTCace: Aspartate/ornithine carbamoyltransferase, 86.15
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 84.06
>PLN02331 phosphoribosylglycinamide formyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.7e-54  Score=387.46  Aligned_cols=207  Identities=81%  Similarity=1.340  Sum_probs=199.5

Q ss_pred             eEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCCc
Q 022634           82 NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNVD  161 (294)
Q Consensus        82 rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~D  161 (294)
                      ||+||+||+||||++|+++++.+.++++|++||||+++++++++|+++|||++.+++.++.+++.+++++++.|+++++|
T Consensus         1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D   80 (207)
T PLN02331          1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVD   80 (207)
T ss_pred             CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCC
Confidence            79999999999999999999999999999999999999999999999999999988766666777888999999999999


Q ss_pred             EEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEEEeC
Q 022634          162 FILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPV  241 (294)
Q Consensus       162 liV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~~~I  241 (294)
                      ++|++|||+|||+++++.+++++||+||||||+|||+++||+|++|+++.+|+++||+|+|+|++++|+||||+|+.++|
T Consensus        81 liv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tvh~v~~~~D~G~Ii~Q~~~~I  160 (207)
T PLN02331         81 FVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVVPV  160 (207)
T ss_pred             EEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEEEEECCCCCCCCeEEEEEEec
Confidence            99999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCeeeecCCC
Q 022634          242 LWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKE  288 (294)
Q Consensus       242 ~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~~~~~~~~  288 (294)
                      .++||+++|++|+..+|+++|+++|+.+.+|++.+++.++.++++||
T Consensus       161 ~~~dt~~~L~~r~~~~e~~ll~~al~~l~~~~~~~~~~~~~~~~~~~  207 (207)
T PLN02331        161 LATDTPEELAARVLHEEHQLYVEVVAALCEERIVWREDGVPLIRSKE  207 (207)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEeCCCeeEEecCCC
Confidence            99999999999999999999999999999999999999999999986

>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02828 formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group Back     alignment and domain information
>PLN02285 methionyl-tRNA formyltransferase Back     alignment and domain information
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06988 putative formyltransferase; Provisional Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>TIGR00460 fmt methionyl-tRNA formyltransferase Back     alignment and domain information
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>PRK07579 hypothetical protein; Provisional Back     alignment and domain information
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>PRK08300 acetaldehyde dehydrogenase; Validated Back     alignment and domain information
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot Back     alignment and domain information
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) Back     alignment and domain information
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
4ds3_A209 Crystal Structure Of Phosphoribosylglycinamide Form 5e-30
3auf_A229 Crystal Structure Of Glycinamide Ribonucleotide Tra 2e-29
3av3_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 3e-29
3p9x_A211 Crystal Structure Of Phosphoribosylglycinamide Form 7e-29
1grc_A212 Crystal Structure Of Glycinamide Ribonucleotide Tra 6e-24
1c3e_A209 New Insights Into Inhibitor Design From The Crystal 7e-24
1cdd_A212 Structures Of Apo And Complexed Escherichia Coli Gl 7e-24
2ywr_A216 Crystal Structure Of Gar Transformylase From Aquife 1e-23
2gar_A212 A Ph-dependent Stablization Of An Active Site Loop 2e-23
3kcq_A215 Crystal Structure Of Phosphoribosylglycinamide Form 9e-23
1mej_B223 Human Glycinamide Ribonucleotide Transformylase Dom 4e-22
1zly_A203 The Structure Of Human Glycinamide Ribonucleotide T 6e-22
1meo_A209 Human Glycinamide Ribonucleotide Transformylase At 6e-22
1zlx_A203 The Apo Structure Of Human Glycinamide Ribonucleoti 3e-21
3tqr_A215 Structure Of The Phosphoribosylglycinamide Formyltr 3e-18
3da8_A215 Crystal Structure Of Purn From Mycobacterium Tuberc 3e-17
3o1l_A302 Crystal Structure Of A Formyltetrahydrofolate Defor 2e-10
3n0v_A286 Crystal Structure Of A Formyltetrahydrofolate Defor 2e-10
1s3i_A 310 Crystal Structure Of The N Terminal Hydrolase Domai 6e-09
3tqq_A 314 Structure Of The Methionyl-Trna Formyltransferase ( 8e-09
3nrb_A287 Crystal Structure Of A Formyltetrahydrofolate Defor 5e-08
2bw0_A329 Crystal Structure Of The Hydrolase Domain Of Human 7e-08
3obi_A288 Crystal Structure Of A Formyltetrahydrofolate Defor 1e-07
3lou_A292 Crystal Structure Of Formyltetrahydrofolate Deformy 2e-07
4iqf_A 317 Crystal Structure Of Methyionyl-trna Formyltransfer 6e-06
1fmt_A 314 Methionyl-Trnafmet Formyltransferase From Escherich 3e-05
1z7e_A 660 Crystal Structure Of Full Length Arna Length = 660 6e-05
2bln_A305 N-Terminal Formyltransferase Domain Of Arna In Comp 9e-05
1yrw_A302 Crystal Structure Of E.Coli Arna Transformylase Dom 1e-04
3r8x_A 318 Crystal Structure Of Methionyl-Trna Formyltransfera 4e-04
>pdb|4DS3|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Brucella Melitensis Length = 209 Back     alignment and structure 
Iteration: 1

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Query: 78  IKKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFP 137
           +K+  + +F+SGGGSN  ++  A  A     ++V + ++K + GG   A    I   +F 
Sbjct: 5   MKRNRVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFK 64
Query: 138 KTKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGG 197
           +          + ++AAL  +  D I LAGY++L+    I  Y   I+NIHPSLLP F  
Sbjct: 65  RKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSLLPLF-- 122
Query: 198 KGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLE 257
               G+  H+  + +G + +G T+H V E  D G ILAQ  VPVL  DTAE LAARVL  
Sbjct: 123 ---PGLHTHQRALDAGMKLAGCTVHLVTEGMDEGPILAQAAVPVLDGDTAETLAARVLKA 179
Query: 258 EHRLY 262
           EHRLY
Sbjct: 180 EHRLY 184
>pdb|3AUF|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Symbiobacterium Toebii Length = 229 Back     alignment and structure
>pdb|3AV3|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase 1 From Geobacillus Kaustophilus Length = 212 Back     alignment and structure
>pdb|3P9X|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Bacillus Halodurans Length = 211 Back     alignment and structure
>pdb|1GRC|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Transformylase From Escherichia Coli At 3.0 Angstroms Resolution: A Target Enzyme For Chemotherapy Length = 212 Back     alignment and structure
>pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal Structure And Nmr Studies Of E. Coli Gar Transformylate In Complex With Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid. Length = 209 Back     alignment and structure
>pdb|1CDD|A Chain A, Structures Of Apo And Complexed Escherichia Coli Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|2YWR|A Chain A, Crystal Structure Of Gar Transformylase From Aquifex Aeolicus Length = 216 Back     alignment and structure
>pdb|2GAR|A Chain A, A Ph-dependent Stablization Of An Active Site Loop Observed From Low And High Ph Crystal Structures Of Mutant Monomeric Glycinamide Ribonucleotide Transformylase Length = 212 Back     alignment and structure
>pdb|3KCQ|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Anaplasma Phagocytophilum Length = 215 Back     alignment and structure
>pdb|1MEJ|B Chain B, Human Glycinamide Ribonucleotide Transformylase Domain At Ph 8.5 Length = 223 Back     alignment and structure
>pdb|1ZLY|A Chain A, The Structure Of Human Glycinamide Ribonucleotide Transformylase In Complex With Alpha,beta-n- (hydroxyacetyl)-d-ribofuranosylamine And 10-formyl-5,8, Dideazafolate Length = 203 Back     alignment and structure
>pdb|1MEO|A Chain A, Human Glycinamide Ribonucleotide Transformylase At Ph 4.2 Length = 209 Back     alignment and structure
>pdb|1ZLX|A Chain A, The Apo Structure Of Human Glycinamide Ribonucleotide Transformylase Length = 203 Back     alignment and structure
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide Formyltransferase (Purn) In Complex With Ches From Coxiella Burnetii Length = 215 Back     alignment and structure
>pdb|3DA8|A Chain A, Crystal Structure Of Purn From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str. Dc3000 At 2.20 A Resolution Length = 302 Back     alignment and structure
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A Resolution Length = 286 Back     alignment and structure
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of 10- Formyltetrahydrofolate Dehydrogenase Length = 310 Back     alignment and structure
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt) From Coxiella Burnetii Length = 314 Back     alignment and structure
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A Resolution Length = 287 Back     alignment and structure
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10- Formyltetrahydrofolate 2 Dehydrogenase Length = 329 Back     alignment and structure
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase (Np_949368) From Rhodopseudomonas Palustris Cga009 At 1.95 A Resolution Length = 288 Back     alignment and structure
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase (yp_105254.1) From Burkholderia Mallei Atcc 23344 At 1.90 A Resolution Length = 292 Back     alignment and structure
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase From Bacillus Anthracis Length = 317 Back     alignment and structure
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 Back     alignment and structure
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 Back     alignment and structure
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex With N-5-Formyltetrahydrofolate And Ump Length = 305 Back     alignment and structure
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain Length = 302 Back     alignment and structure
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From Yersinia Pestis Complexed With L-Methionine Length = 318 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 2e-76
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 6e-75
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 1e-74
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 1e-73
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 3e-73
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 5e-73
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 2e-72
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 5e-72
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 6e-70
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 4e-69
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 3e-23
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 5e-23
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 8e-23
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 3e-22
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 5e-22
2bw0_A329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 3e-19
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 3e-14
2bln_A305 Protein YFBG; transferase, formyltransferase, L-AR 4e-14
3rfo_A317 Methionyl-tRNA formyltransferase; structural genom 5e-13
1fmt_A314 Methionyl-tRNA FMet formyltransferase; initiator t 2e-12
3tqq_A314 Methionyl-tRNA formyltransferase; protein synthesi 4e-12
3q0i_A318 Methionyl-tRNA formyltransferase; structural genom 5e-12
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229 Back     alignment and structure
 Score =  231 bits (592), Expect = 2e-76
 Identities = 71/212 (33%), Positives = 106/212 (50%), Gaps = 5/212 (2%)

Query: 79  KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPK 138
               + V +SG G+N ++I   C  G + G V V+++++ D  G E AR   +  +    
Sbjct: 21  HMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDP 80

Query: 139 TKDEPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGK 198
                       L   L    VD + LAGY++L+   ++ A+P  I+NIHPSLLPAF G 
Sbjct: 81  AAYPSRTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSLLPAFPG- 139

Query: 199 GYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEE 258
               ++  +  +  G + +G T+HFV    D G I+ Q  VPVL  DT EDL  R+L EE
Sbjct: 140 ----LEAQRQALEHGVKVAGCTVHFVTAGVDEGPIILQAAVPVLEGDTVEDLRRRILAEE 195

Query: 259 HRLYVDVASALCEERVVWREDGVPVIRSKENP 290
           HR+Y +      E R+V     V ++   E P
Sbjct: 196 HRIYPEAIRLFAEGRLVIEGRRVRILDRAEAP 227
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215 Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211 Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215 Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Length = 292 Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Length = 286 Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Length = 302 Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Length = 287 Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Length = 288 Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Length = 329 Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Length = 305 Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Length = 314 Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Length = 314 Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Length = 318 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Length = 260 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 100.0
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 100.0
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 100.0
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 100.0
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 100.0
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 100.0
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 100.0
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 100.0
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 100.0
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 100.0
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 100.0
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 100.0
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 100.0
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 100.0
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 100.0
1fmt_A 314 Methionyl-tRNA FMet formyltransferase; initiator t 100.0
2bln_A305 Protein YFBG; transferase, formyltransferase, L-AR 100.0
2bw0_A329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 100.0
3q0i_A 318 Methionyl-tRNA formyltransferase; structural genom 100.0
3rfo_A 317 Methionyl-tRNA formyltransferase; structural genom 100.0
3tqq_A 314 Methionyl-tRNA formyltransferase; protein synthesi 100.0
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 100.0
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 99.96
3rjz_A237 N-type ATP pyrophosphatase superfamily; structural 92.39
4fb5_A 393 Probable oxidoreductase protein; PSI-biology, nysg 87.69
3nkl_A141 UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo 87.11
3s2u_A 365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 87.04
4had_A 350 Probable oxidoreductase protein; structural genomi 85.7
3keo_A212 Redox-sensing transcriptional repressor REX; DNA b 85.23
3dty_A 398 Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram 84.04
1zh8_A 340 Oxidoreductase; TM0312, structural genomics, JO ce 82.92
3v5n_A 417 Oxidoreductase; structural genomics, PSI-biology, 81.35
3moi_A 387 Probable dehydrogenase; structural genomics, PSI2, 81.17
3mz0_A 344 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; 81.0
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 Back     alignment and structure
Probab=100.00  E-value=4.5e-52  Score=372.62  Aligned_cols=205  Identities=25%  Similarity=0.458  Sum_probs=187.2

Q ss_pred             CceeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhc
Q 022634           79 KKKNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEV  158 (294)
Q Consensus        79 ~~~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~  158 (294)
                      +++||+||+||+||||++|++++..+ ++++|++||||++++.++++|+++|||++.++...+..+..+++++++.|+++
T Consensus         4 ~~~riavl~SG~Gsnl~all~~~~~~-~~~eI~~Vis~~~~a~~~~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~   82 (215)
T 3tqr_A            4 EPLPIVVLISGNGTNLQAIIGAIQKG-LAIEIRAVISNRADAYGLKRAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHY   82 (215)
T ss_dssp             CCEEEEEEESSCCHHHHHHHHHHHTT-CSEEEEEEEESCTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEEEeCCcHHHHHHHHHHHcC-CCCEEEEEEeCCcchHHHHHHHHcCCCEEEeCccccCchhHhHHHHHHHHHhc
Confidence            47899999999999999999999998 88999999999999988999999999999987655444444578899999999


Q ss_pred             CCcEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEE
Q 022634          159 NVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRV  238 (294)
Q Consensus       159 ~~DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~  238 (294)
                      ++|++|+++||+|||+++++.|++++||+||||||+|||++    |++| ||.+|++++|+|+|+|++++|+||||.|+.
T Consensus        83 ~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~~----pi~~-Ai~~G~~~tGvTvh~v~~~~D~G~Ii~Q~~  157 (215)
T 3tqr_A           83 DPKLIVLAGFMRKLGKAFVSHYSGRMINIHPSLLPKYTGLN----THER-ALAAGETEHGVSVHYVTEDLDAGPLICQAR  157 (215)
T ss_dssp             CCSEEEESSCCSCCCHHHHHHTTTSEEEEESSSTTTTCSSC----HHHH-HHHTTCSEEEEEEEECC-CTTCSCEEEEEE
T ss_pred             CCCEEEEccchhhCCHHHHhhccCCeEEeCcccCCCCCChh----HHHH-HHHcCCCeEEEEEEEEcCCCCCCCEEEEEE
Confidence            99999999999999999999999999999999999999987    7777 599999999999999999999999999999


Q ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCeeeecCCCCC
Q 022634          239 VPVLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKENP  290 (294)
Q Consensus       239 ~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~~~~~~~~~~  290 (294)
                      ++|.++||.++|++|+.++++++++++|+.+.+|++.+.. +..++++.+.|
T Consensus       158 v~I~~~dt~~~L~~rl~~~~~~ll~~~l~~~~~g~~~~~~-~~~~~~~~~~~  208 (215)
T 3tqr_A          158 LSITPQDTPETLKTRVHALEHIIYPEVLSWFAAGRLNYHN-NQVFLDGKPLA  208 (215)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEET-TEEEETTEECC
T ss_pred             EecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEecC-CEEEEcCccCC
Confidence            9999999999999999999999999999999999998854 44556776654
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Back     alignment and structure
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} Back     alignment and structure
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* Back     alignment and structure
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Back     alignment and structure
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Back     alignment and structure
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Back     alignment and structure
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d1jkxa_209 c.65.1.1 (A:) Glycinamide ribonucleotide transform 2e-37
d1meoa_205 c.65.1.1 (A:) Glycinamide ribonucleotide transform 2e-32
d1zgha2164 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransf 3e-13
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

 Score =  129 bits (326), Expect = 2e-37
 Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 5/213 (2%)

Query: 82  NLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKD 141
           N+ V +SG GSN ++I  AC    + G V  + +NK D  G E AR   I       +  
Sbjct: 2   NIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAF 61

Query: 142 EPNGLSPNDLVAALSEVNVDFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYY 201
           +       +L+  +     D ++LAG+++++    +  Y   ++NIHPSLLP      Y 
Sbjct: 62  DSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLP-----KYP 116

Query: 202 GMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVPVLWNDTAEDLAARVLLEEHRL 261
           G+  H+  + +G    G ++HFV +  D G ++ Q  VPV   D+ +D+ ARV  +EH +
Sbjct: 117 GLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAI 176

Query: 262 YVDVASALCEERVVWREDGVPVIRSKENPDEFS 294
           Y  V S   + R+   E+   +   +  P  ++
Sbjct: 177 YPLVISWFADGRLKMHENAAWLDGQRLPPQGYA 209
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205 Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Length = 164 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d1jkxa_209 Glycinamide ribonucleotide transformylase, GART {E 100.0
d1meoa_205 Glycinamide ribonucleotide transformylase, GART {H 100.0
d2bw0a2203 10-formyltetrahydrofolate dehydrogenase domain 1 { 100.0
d1fmta2206 Methionyl-tRNAfmet formyltransferase {Escherichia 100.0
d2blna2203 Polymyxin resistance protein ArnA, N-terminal doma 100.0
d1zgha2164 Methionyl-tRNAfmet formyltransferase {Clostridium 99.94
d1nvmb1157 Acetaldehyde dehydrogenase (acylating) {Pseudomona 95.02
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 95.02
d1kjqa2111 Glycinamide ribonucleotide transformylase PurT, N- 90.23
d1q0qa2151 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E 86.86
d1r0ka2150 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z 86.18
d1h6da1221 Glucose-fructose oxidoreductase, N-terminal domain 83.03
d1ydwa1184 Probable oxidoreductase At4g09670 {Thale cress (Ar 82.13
d1zh8a1181 Hypothetical protein TM0312 {Thermotoga maritima [ 82.05
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Glycinamide ribonucleotide transformylase, GART
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-49  Score=352.01  Aligned_cols=208  Identities=28%  Similarity=0.521  Sum_probs=192.0

Q ss_pred             eeEEEEEeCCchHHHHHHHHHHcCCCCceEEEEecCCCCCccHHHHHhCCCCEEEcCCCCCCCCCCChhHHHHHHHhcCC
Q 022634           81 KNLAVFVSGGGSNFRSIHAACLAGSVYGDVVVLVTNKPDCGGAEYARDNSIPVILFPKTKDEPNGLSPNDLVAALSEVNV  160 (294)
Q Consensus        81 ~rIaVl~SG~gs~l~~ll~~~~~~~~~~eI~~Vvt~~~~~~~~~~A~~~gIP~~~~~~~~~~~~~~~d~~l~~~L~~~~~  160 (294)
                      +|||||+||+||||++|++++..+.++++|++||||++++...++|++.++|........+..+..+++++.+.|++.++
T Consensus         1 MkIaVl~SG~GSnL~aLl~a~~~~~l~~~I~~Visn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   80 (209)
T d1jkxa_           1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAP   80 (209)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCC
T ss_pred             CEEEEEEecCcHHHHHHHHHHHcCCCCCEEEEEEeCCCCcccchhhhccccceeeeeccccccccchHHHHHHHHHhcCC
Confidence            58999999999999999999999988899999999999988899999999999887655555555567788899999999


Q ss_pred             cEEEEeccccccChhHHhcCCCCEEEEcCCCCCCCCCCCCCcchHHHHHHHcCCCEEEEEEEEecCCCCCCceEEEEEEe
Q 022634          161 DFILLAGYLKLIPMELIRAYPRSIVNIHPSLLPAFGGKGYYGMKVHKAVIASGARYSGPTIHFVDEHYDTGRILAQRVVP  240 (294)
Q Consensus       161 DliV~agy~~ilp~~~l~~~~~g~iNiHPSlLP~yRG~~~yg~pv~~~aI~~G~~~tGvTvH~v~~~~D~G~II~Q~~~~  240 (294)
                      |++|++||++|||+++++.+++++||+|||+||.|||.+    |++| +|.+|++++|+|+|+|++++|+||||.|++++
T Consensus        81 Dliv~~g~~~il~~~~l~~~~~~~iN~HpslLP~~rG~~----p~~~-~i~~g~~~~G~t~h~~~~~~D~G~Ii~q~~~~  155 (209)
T d1jkxa_          81 DVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLH----THRQ-ALENGDEEHGTSVHFVTDELDGGPVILQAKVP  155 (209)
T ss_dssp             SEEEESSCCSCCCHHHHHHTTTSEEEEESSCTTSCCSSC----HHHH-HHHTTCSEEEEEEEECCSSTTCSCEEEEEEEE
T ss_pred             CEEEEeeeeEecChhhhcccccCEEEeCCchhcccCCcC----chhH-HHHCCCeeecceEEEecCCCCcccEeeEEEEc
Confidence            999999999999999999999999999999999999987    7777 59999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCCeeeecCCC-CCCCCC
Q 022634          241 VLWNDTAEDLAARVLLEEHRLYVDVASALCEERVVWREDGVPVIRSKE-NPDEFS  294 (294)
Q Consensus       241 I~~~dt~~~L~~rl~~~~~~ll~~~l~~l~~g~i~~~~~~~~~~~~~~-~~~~~~  294 (294)
                      |.++||+++|++|+...++++++++|+.+++|++.+.++++.+ .++. +|+||+
T Consensus       156 i~~~d~~~~l~~k~~~~e~~l~~~~i~~i~~~~i~~~~~~~~~-~~~r~p~dGy~  209 (209)
T d1jkxa_         156 VFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWL-DGQRLPPQGYA  209 (209)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEETTEEEE-TTEECCTTCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeEEcCCEEEE-CCccCCCCCCC
Confidence            9999999999999999999999999999999999998888876 4555 689995
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure