Citrus Sinensis ID: 022635

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIAN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHccccEEEEEEEEEEEEEccEEEcccccEEEEccccEEEEcccEEEEccccEEEEccEEEcccccccccEEEcccccEEEEEcccccccccccEEEEEcccEEEEEcEEEEcccccccccccccccccccEEEEEEcccccccccccccccccEEEEEccEEEcccEEEEEcccccEEEEEcEEEEccccccEEEEEEcccccccccccEEEEEcccEEEccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccEEEEEccccEEEEEEccEEEEEcEEEEEEcccEEccccEEEEEEcccEEEEEEEEEEEEcEEEcccccccccEEEEEcccccEEEEcccccccccccEEEccccEEEEEEccEEEEEEEcEEEcccccccccccEEEEEEEccccccEEccccEEEEEEEEEEccccccEEEEEEcccccEEEccccEEEcccccccEEEEEEcccccHHcccccEcccccEEEcccEEEccccccccccccHHHcccccccccccHHccccEEcccccccccccccccccc
Coil and Loop (DISEMBL)
mclfiddgpgslregcrrrepLWIVFEVSGTIhlssylsvssyktidgrgqrikltgkglrlkeCEHVIICNlefeggrghdvdgiqikpnsrhiwidrcslrdyddgliditrqstditvsrcyftqhdktmligadpshvgdrcirvtihhclfdgtrqrhprlrfgkvhlynnytrnwGIYAVCASVESQIYSQCNIyeagqkkrtFEYYTEKAADKLEaksglirsegdIFLKGAQAQLLtgvgeecvfhpseyyptwtmeapsdsLKQILQICTgwqsiprpadvmian
Flexible Loop (DISEMBL)
mclfiddgpgslregcrrrePLWIVFEVsgtihlssylsvssyktidgrgqRIKLtgkglrlkeCEHVIICNLefeggrghdvdgiqikpnsrhiwiDRCSLRDYDDGLIDItrqstditvsrCYFTQHDKTMLIGADPSHVGDRCIRVTIHHclfdgtrqrhprlrfGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTgwqsiprpadvmian
Low Complexity Region (SEG)
MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIAN
Disordered region (IsUnstruct)
************REGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIP*********
Disordered Region (DISOPRED)
MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIP*********
Disordered Region (DISEMBL)
MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIAN
Disordered Region (DISPRO)
MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIAN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9C8G4	368	Probable pectate lyase 4	no	no	0.778	0.622	0.396	1e-39
Q9FM66	392	Putative pectate lyase 21	no	no	0.809	0.607	0.396	1e-38
Q93Z04	501	Probable pectate lyase 13	no	no	0.782	0.459	0.407	7e-37
Q93Z25	432	Probable pectate lyase 22	no	no	0.782	0.532	0.362	1e-33
P15721	398	Probable pectate lyase P5	N/A	no	0.789	0.582	0.401	2e-33
P40972	397	Pectate lyase OS=Nicotian	N/A	no	0.792	0.586	0.391	3e-33
Q9LTZ0	412	Putative pectate lyase 11	no	no	0.894	0.638	0.324	4e-33
O65388	384	Putative pectate lyase 2	no	no	0.778	0.596	0.358	7e-33
O65457	394	Putative pectate lyase 17	no	no	0.761	0.568	0.364	7e-33
P24396	404	Probable pectate lyase P1	N/A	no	0.795	0.579	0.360	1e-32

>sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 137/237 (57%), Gaps = 8/237 (3%)

Query: 9   PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEH 67
           PG+LR    + +PLWI F     I L S L ++SYKTIDGRG ++++  G  LR+++ +H
Sbjct: 89  PGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKH 148

Query: 68  VIICNLEFEGGR----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           VII  +     +    G D DGI++   S H+WID C L    DGLID+   ST +T+S 
Sbjct: 149 VIIHGISIHDCKADPNGMDGDGIRVF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISN 207

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWG 182
            YFTQHDK ML+G D S++GD+ +RVTI    F  G  +R PR+R G  H+ NN    W 
Sbjct: 208 NYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQ 267

Query: 183 IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 239
           +YA+  S    I+S+ N Y    +KR+ +  T++     ++K     +  D+F+ GA
Sbjct: 268 MYAIGGSANPIIFSEGN-YFVAPEKRSSKQVTKRMMAGPDSKRWKWGTSRDVFMNGA 323

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2

>sp|Q9FM66|PLY21_ARATH Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/257 (39%), Positives = 135/257 (52%), Gaps = 19/257 (7%)

Query: 9   PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEH 67
           PG+LR    + +PLWI+F+    I L   L V+SYKTIDGRG  +++  G  L L +  +
Sbjct: 103 PGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSN 162

Query: 68  VIICNLEFEG------------GRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ 115
           +II NL                G   D DGI I   SR IWID C+L    DGLID    
Sbjct: 163 IIINNLYIHDCVPVKRNALSSLGGYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNG 221

Query: 116 STDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLY 174
           STDIT+S  Y   H++ ML+G    + GDR +RVTI    F +G  QR PR R G  H+ 
Sbjct: 222 STDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIV 281

Query: 175 NNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEA-KSGLIRSEGD 233
           NN  R+W +YA+  S    I+SQ N++ A   + T E    ++AD  E  K    +SEGD
Sbjct: 282 NNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGD 341

Query: 234 IFLKGAQAQLLTGVGEE 250
             + GA     T  G+E
Sbjct: 342 EMVNGA---FFTPSGKE 355

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1

 Score =  154 bits (389), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 128/243 (52%), Gaps = 13/243 (5%)

Query: 9   PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG-LRLKECEH 67
           PG+LR G  + EPLWIVF  +  I L   L ++SYKT+DGRG  + +TG G L L+  +H
Sbjct: 134 PGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQH 193

Query: 68  VIICNLE---------FEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTD 118
           +II NL          FE     D DGI I   S+ IW+D CS+    DGLID    ST 
Sbjct: 194 IIIHNLHIYDCKPSAGFEKRGRSDGDGISIF-GSQKIWVDHCSMSHCTDGLIDAVMGSTA 252

Query: 119 ITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNY 177
           IT+S  YFT HD+ ML+G D ++  D  ++VTI    F  G  QR PR R G +H+ NN 
Sbjct: 253 ITISNNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNND 312

Query: 178 TRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTE-KAADKLEAKSGLIRSEGDIFL 236
              W +YA+  S    I SQ N Y A       E      + D  E  +   R+EGD+  
Sbjct: 313 FTEWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEVTKRVDSKDDGEWSNWNWRTEGDLME 372

Query: 237 KGA 239
            GA
Sbjct: 373 NGA 375

Susceptibility factor required for infection by most powdery mildews, but not by unrelated pathogens. Exact function not known, but clearly affects cell wall composition.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 21/251 (8%)

Query: 9   PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG-LRLKECEH 67
           PG+LR    + EPLWI+F+   TI L   L ++S+KT+DGRG  + ++G   + ++   +
Sbjct: 136 PGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTN 195

Query: 68  VIICNLEF----EGGRGH--------------DVDGIQIKPNSRHIWIDRCSLRDYDDGL 109
           +II  L      +GG  +              D DG+ I   S H+W+D CSL + +DGL
Sbjct: 196 IIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGGS-HVWVDHCSLSNCNDGL 254

Query: 110 IDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRF 168
           ID  R ST IT+S  Y T H+K ML+G   ++  D+ ++VTI    F +G  QR PR R 
Sbjct: 255 IDAIRGSTAITISNNYLTHHNKVMLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRH 314

Query: 169 GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLI 228
           G  H+ NN   +W +YA+  S    I SQ N + A     + E    + A + E ++   
Sbjct: 315 GYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDDSSSKEVTKHEDAPEDEWRNWNW 374

Query: 229 RSEGDIFLKGA 239
           RSEGD+ L GA
Sbjct: 375 RSEGDLLLNGA 385

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P15721|PLY56_SOLLC Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/259 (40%), Positives = 136/259 (52%), Gaps = 27/259 (10%)

Query: 5   IDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKL-TGKGLRLK 63
           +D  PG+LR G  ++ PLWI F  S  I L+  L VSS KTIDGRG+ + +  G G++++
Sbjct: 97  VDPKPGTLRFGVIQKGPLWITFARSMRIRLTRELIVSSNKTIDGRGKYVHIANGAGIKIQ 156

Query: 64  ECEHVIICNLEFE-----------------GGRGHDV-DGIQIKPNSRHIWIDRCSLRDY 105
              +VII NL                    G RG D  D I I  NS  IWID  S+   
Sbjct: 157 SASNVIISNLRIHNIVPTAGGLLRESDDHLGLRGADEGDAISIF-NSHDIWIDHISMSRA 215

Query: 106 DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR--QRH 163
            DGLID    ST+IT+S C+FT H+K ML GA+     DR +++T+ +  F G R  QR 
Sbjct: 216 TDGLIDAVAGSTNITISNCHFTDHEKVMLFGANDHAEEDRGMKITLAYNHF-GKRLDQRM 274

Query: 164 PRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEY-YTEKAADKLE 222
           PR RFG  HL NN   +W  YA+  S  + I SQ N + A  K    E  Y EK+   +E
Sbjct: 275 PRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIAEDKLLVKEVTYREKSTSSVE 334

Query: 223 --AKSGLIRSEGDIFLKGA 239
              K   I ++GD F  GA
Sbjct: 335 EWMKWTWI-TDGDDFENGA 352

Might be needed during pollen development and tube growth.

Solanum lycopersicum (taxid: 4081)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/258 (39%), Positives = 136/258 (52%), Gaps = 25/258 (9%)

Query: 5   IDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKL-TGKGLRLK 63
           +D  PG+LR G  ++EPLWI+F  +  I LS  L V+S KTIDGRG  + +  G G++++
Sbjct: 96  VDPKPGTLRYGVIQKEPLWIIFGKNMKIKLSRELIVTSNKTIDGRGFNVHIQNGAGIKIQ 155

Query: 64  ECEHVIICNLEFE-----------------GGRGHDV-DGIQIKPNSRHIWIDRCSLRDY 105
              ++II NL                    G RG D  DGI I  +S  IWID  S+   
Sbjct: 156 SASNIIISNLRIHNIVPTPGGLLRESEDHVGLRGSDEGDGISIF-SSHDIWIDHISMSRA 214

Query: 106 DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR--QRH 163
            DGLID    ST+IT+S C+FT H+K ML GA+  +V D+ +++T+ +  F G R  QR 
Sbjct: 215 TDGLIDAVAASTNITISNCHFTDHEKVMLFGANDHYVLDKDMKITLAYNHF-GKRLDQRM 273

Query: 164 PRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEY-YTEK-AADKL 221
           PR RFG  HL NN   +W  YA+  S  + I SQ N + A  +    E  Y EK  A   
Sbjct: 274 PRCRFGFFHLVNNDYTHWERYAIGGSSGATIISQGNRFIAEDELLVKEVTYREKLTASVA 333

Query: 222 EAKSGLIRSEGDIFLKGA 239
           E       S+GD    GA
Sbjct: 334 EWMKWTWISDGDDMENGA 351

Nicotiana tabacum (taxid: 4097)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2

 Score =  142 bits (357), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 141/302 (46%), Gaps = 39/302 (12%)

Query: 5   IDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-------- 56
           ++  PG+LR    + EPLWI+F+    I L   L ++S+KTIDGRG  + +T        
Sbjct: 114 VNPRPGTLRYAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITDGPCLKIH 173

Query: 57  -----------------GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDR 99
                            G G  +K+  H     ++ +G      D + I    +H+WID 
Sbjct: 174 YATNIIIHGINIHDCKPGSGGMIKDGPHHTGWWMQSDG------DAVAIF-GGKHVWIDH 226

Query: 100 CSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DG 158
           CSL + DDGLID    ST IT+S  + T HDK ML+G   S+  D+ ++VTI    F +G
Sbjct: 227 CSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEG 286

Query: 159 TRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAA 218
             QR PR R G  H+ NN   +W +YA+  S    IYSQ N + A   +   E    + A
Sbjct: 287 LVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDA 346

Query: 219 DKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQIC 278
            + + +    RSEGD+ L GA  +      E     PS Y    ++ A   SL   +   
Sbjct: 347 PESKWRDWNWRSEGDMLLNGAYFR------ESGAEAPSTYARASSLSARPSSLVGSITTT 400

Query: 279 TG 280
            G
Sbjct: 401 AG 402

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|O65388|PLY2_ARATH Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/251 (35%), Positives = 130/251 (51%), Gaps = 22/251 (8%)

Query: 9   PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEH 67
           PG+LR    + +PLWI F     I L + L ++SYKTIDGRG ++++  G  + ++   H
Sbjct: 90  PGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSH 149

Query: 68  VIICNLEF------EGGR------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGL 109
           VII  +        + GR            G D D I I  +S HIWID C      DGL
Sbjct: 150 VIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIF-DSSHIWIDHCFFSRCQDGL 208

Query: 110 IDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRF 168
           ID+   ST +T+S  YFTQHDK ML+G + ++V D+ +RVTI    F  G  +R PR+R 
Sbjct: 209 IDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRR 268

Query: 169 GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLI 228
           G  H+ NN    W +YA+  S +  I+S+ N + A       +  T++     + K    
Sbjct: 269 GYAHVANNRYEKWQMYAIGGSADPTIFSEGNYFVASDDPSK-KQVTKRIDSGYDWKRWKW 327

Query: 229 RSEGDIFLKGA 239
           R+  D+F  GA
Sbjct: 328 RTSKDVFKNGA 338

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|O65457|PLY17_ARATH Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/255 (36%), Positives = 131/255 (51%), Gaps = 31/255 (12%)

Query: 9   PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEH 67
           PGSLR G  + +PLWI F     I L++ L V+SYKTIDGRG ++++  G  + +++  +
Sbjct: 100 PGSLRYGVIQAKPLWITFAKDMVITLANELMVNSYKTIDGRGAKVEIAYGPCITIQDVTN 159

Query: 68  VII-------CNLEFEGG-----------RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGL 109
           VI+       C     G            +G D D I I   S ++WID C L    DGL
Sbjct: 160 VIVHGISIHDCKPGKSGKVRSSPTHVGHRKGSDGDAITIF-GSSNVWIDHCYLASCTDGL 218

Query: 110 IDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRF 168
           ID+   ST IT+S  YFTQHDK ML+G + + V D  ++VT+    F  G  +R PR+R 
Sbjct: 219 IDVIHASTAITISNNYFTQHDKVMLLGHNDNFVKDVKMKVTVAFNHFGPGLVERMPRVRR 278

Query: 169 GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGL- 227
           G  H+ NN    W +YA+  S +  I+S+ N + A  K  +      K   K E K G  
Sbjct: 279 GYAHVANNRYDKWIMYAIGGSADPTIFSEGNYFIASDKSYS------KEVTKREVKGGWN 332

Query: 228 ---IRSEGDIFLKGA 239
               R+  D+F  GA
Sbjct: 333 NWRWRTSNDVFKNGA 347

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

>sp|P24396|PLY18_SOLLC Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/255 (36%), Positives = 130/255 (50%), Gaps = 21/255 (8%)

Query: 5   IDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTG------- 57
           ++  PG+LR    + EPLWI+F+    I L   L ++SYKTIDGRG  + ++G       
Sbjct: 104 VNPKPGTLRHAVIQDEPLWIIFKRDMVIQLKQELVMNSYKTIDGRGASVHISGGPCITIH 163

Query: 58  -------KGLRLKECEHVIICNLEFEGGRG-----HDVDGIQIKPNSRHIWIDRCSLRDY 105
                   G+ + +C+     N+             D DGI I    ++IW+D CSL + 
Sbjct: 164 HTSNIIIHGINIHDCKQSGNGNIRDSPNHSGWWDVSDGDGISIF-GGKNIWVDHCSLSNC 222

Query: 106 DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHP 164
            DGLID    ST IT+S  YFT HDK ML+G   S   D+ ++VT+    F +G  QR P
Sbjct: 223 HDGLIDAIHGSTAITISNNYFTHHDKVMLLGHSDSFTQDKGMQVTVAFNHFGEGLVQRMP 282

Query: 165 RLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAK 224
           R R G  H+ NN   +W +YA+  S    I SQ N + A  +K   E    + A + + +
Sbjct: 283 RCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNEKYRKEVTKHEDAPESQWR 342

Query: 225 SGLIRSEGDIFLKGA 239
           S   RSEGD+ L GA
Sbjct: 343 SWNWRSEGDLMLNGA 357

May have a role in the development of the transmitting tissue of the style and/or in the events related to pollination such as some aspect in the facilitation of compatible pollen tube growth.

Solanum lycopersicum (taxid: 4081)

EC: 4

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
118481149	312	unknown [Populus trichocarpa]	0.976	0.919	0.874	1e-150
224098198	327	predicted protein [Populus trichocarpa]	0.976	0.877	0.871	1e-150
297816804	331	pectate lyase family protein [Arabidopsi	0.972	0.864	0.856	1e-148
30694193	331	pectate lyase [Arabidopsis thaliana] gi|	0.972	0.864	0.853	1e-148
7019647	341	pectate lyase-like protein [Arabidopsis	0.972	0.838	0.853	1e-148
42572687	307	pectate lyase [Arabidopsis thaliana] gi|	0.972	0.931	0.853	1e-148
255571673	312	Pectate lyase precursor, putative [Ricin	0.918	0.865	0.914	1e-147
388520933	331	unknown [Lotus japonicus]	0.972	0.864	0.849	1e-145
118483499	386	unknown [Populus trichocarpa]	0.986	0.751	0.837	1e-145
225448815	331	PREDICTED: probable pectate lyase 4 [Vit	0.986	0.876	0.862	1e-145

>gi|118481149|gb|ABK92527.1| unknown [Populus trichocarpa]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 251/287 (87%), Positives = 267/287 (93%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
             DDGPGSLREGCRR+EPLWIVFEVSGTI+L S LSVSSYKTIDGRGQRIK+ GKGLRLK
Sbjct: 26  LADDGPGSLREGCRRQEPLWIVFEVSGTINLVSQLSVSSYKTIDGRGQRIKVAGKGLRLK 85

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEHVI+CNLEFEGGRGHD+DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR
Sbjct: 86  ECEHVIVCNLEFEGGRGHDIDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 145

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           CYF QHDKTMLIGAD SHVGDRCIRVTIHHC F+GTRQRHPRLRFGKVHLYNNYTRNWGI
Sbjct: 146 CYFAQHDKTMLIGADASHVGDRCIRVTIHHCFFNGTRQRHPRLRFGKVHLYNNYTRNWGI 205

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVE+QIYSQCNIYEAGQKK+TFE+YTEKAAD+  A SGLIRSEGD+ L GAQ+ L
Sbjct: 206 YAVCASVEAQIYSQCNIYEAGQKKKTFEFYTEKAADRQGASSGLIRSEGDVLLNGAQSCL 265

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADV 290
           L GVGE CVFHP EYYPTWT+E+P DSLK +LQICTGWQSIPRPA +
Sbjct: 266 LQGVGENCVFHPGEYYPTWTLESPLDSLKDVLQICTGWQSIPRPAGM 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098198|ref|XP_002311134.1| predicted protein [Populus trichocarpa] gi|222850954|gb|EEE88501.1| predicted protein [Populus trichocarpa]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/287 (87%), Positives = 267/287 (93%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
             DDGPGSLREGCRR+EPLWIVFEVSGTI+L S LSVSSYKTIDGRGQRIK+ GKGLRLK
Sbjct: 41  LADDGPGSLREGCRRQEPLWIVFEVSGTINLVSQLSVSSYKTIDGRGQRIKVAGKGLRLK 100

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEHVI+CNLEFEGGRGHD+DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR
Sbjct: 101 ECEHVIVCNLEFEGGRGHDIDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 160

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           CYF QHDKTMLIGAD SHVGDRCIRVTIHHC F+GTRQRHPRLR+GKVHLYNNYTRNWGI
Sbjct: 161 CYFAQHDKTMLIGADASHVGDRCIRVTIHHCFFNGTRQRHPRLRYGKVHLYNNYTRNWGI 220

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVE+QIYSQCNIYEAGQKK+TFE+YTEKAAD+  A SGLIRSEGD+ L GAQ+ L
Sbjct: 221 YAVCASVEAQIYSQCNIYEAGQKKKTFEFYTEKAADRQGASSGLIRSEGDVLLNGAQSCL 280

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADV 290
           L GVGE CVFHP EYYPTWT+E+P DSLK +LQICTGWQSIPRPA +
Sbjct: 281 LQGVGENCVFHPGEYYPTWTLESPLDSLKDVLQICTGWQSIPRPAGM 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816804|ref|XP_002876285.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322123|gb|EFH52544.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 245/286 (85%), Positives = 267/286 (93%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
             DDGPG+LREG RR+EPLWIVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLK
Sbjct: 41  LADDGPGTLREGGRRKEPLWIVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLK 100

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEH+IICNLEFEGGRGHDVDGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSR
Sbjct: 101 ECEHIIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 160

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           CYF QHDKTMLIGADPSHV DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGI
Sbjct: 161 CYFAQHDKTMLIGADPSHVEDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGI 220

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVE+Q++SQCNIYEAG KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  L
Sbjct: 221 YAVCASVEAQVFSQCNIYEAGVKKKTFEYYSEKAADKEEARAGLVRSENDLFLNGAQPSL 280

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD 289
           LTG  EECVFHPSE+YPTWT+E PS++LKQI+QICTGWQS+ RP+D
Sbjct: 281 LTGASEECVFHPSEHYPTWTVEPPSETLKQIMQICTGWQSLSRPSD 326

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694193|ref|NP_191074.2| pectate lyase [Arabidopsis thaliana] gi|190886519|gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] gi|192571722|gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] gi|332645823|gb|AEE79344.1| pectate lyase [Arabidopsis thaliana]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 244/286 (85%), Positives = 267/286 (93%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
             DDGPG+LREG RR+EPLWIVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLK
Sbjct: 41  LADDGPGTLREGGRRKEPLWIVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLK 100

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEH+IICNLEFEGGRGHDVDGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSR
Sbjct: 101 ECEHIIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 160

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           CYF QHDKTMLIGADPSHV DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGI
Sbjct: 161 CYFAQHDKTMLIGADPSHVEDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGI 220

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVE+Q++SQCNIYEAG KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  L
Sbjct: 221 YAVCASVEAQVFSQCNIYEAGVKKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSL 280

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD 289
           +TG  EECVFHPSE+YPTWT+E PS++LKQI+QICTGWQS+ RP+D
Sbjct: 281 MTGASEECVFHPSEHYPTWTVEPPSETLKQIMQICTGWQSLSRPSD 326

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7019647|emb|CAB75748.1| pectate lyase-like protein [Arabidopsis thaliana]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 244/286 (85%), Positives = 268/286 (93%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
            +DDGPG+LREG RR+EPLWIVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLK
Sbjct: 51  ILDDGPGTLREGGRRKEPLWIVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLK 110

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEH+IICNLEFEGGRGHDVDGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSR
Sbjct: 111 ECEHIIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 170

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           CYF QHDKTMLIGADPSHV DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGI
Sbjct: 171 CYFAQHDKTMLIGADPSHVEDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGI 230

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVE+Q++SQCNIYEAG KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  L
Sbjct: 231 YAVCASVEAQVFSQCNIYEAGVKKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSL 290

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD 289
           +TG  EECVFHPSE+YPTWT+E PS++LKQI+QICTGWQS+ RP+D
Sbjct: 291 MTGASEECVFHPSEHYPTWTVEPPSETLKQIMQICTGWQSLSRPSD 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572687|ref|NP_974439.1| pectate lyase [Arabidopsis thaliana] gi|332645824|gb|AEE79345.1| pectate lyase [Arabidopsis thaliana]

 Score =  528 bits (1361), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 244/286 (85%), Positives = 268/286 (93%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
            +DDGPG+LREG RR+EPLWIVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLK
Sbjct: 17  ILDDGPGTLREGGRRKEPLWIVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLK 76

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEH+IICNLEFEGGRGHDVDGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSR
Sbjct: 77  ECEHIIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 136

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           CYF QHDKTMLIGADPSHV DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGI
Sbjct: 137 CYFAQHDKTMLIGADPSHVEDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGI 196

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVE+Q++SQCNIYEAG KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  L
Sbjct: 197 YAVCASVEAQVFSQCNIYEAGVKKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSL 256

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD 289
           +TG  EECVFHPSE+YPTWT+E PS++LKQI+QICTGWQS+ RP+D
Sbjct: 257 MTGASEECVFHPSEHYPTWTVEPPSETLKQIMQICTGWQSLSRPSD 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571673|ref|XP_002526780.1| Pectate lyase precursor, putative [Ricinus communis] gi|223533856|gb|EEF35586.1| Pectate lyase precursor, putative [Ricinus communis]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 247/270 (91%), Positives = 258/270 (95%)

Query: 6   DDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKEC 65
           DDGPGSLR+GCRRREPLWIVFEVSGTIHL+SYLSVSSYKTIDGRGQRIK TGKGLRLKEC
Sbjct: 43  DDGPGSLRDGCRRREPLWIVFEVSGTIHLNSYLSVSSYKTIDGRGQRIKFTGKGLRLKEC 102

Query: 66  EHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCY 125
           EH+IICNLEFE GRGHDVDGIQIKPNS+HIWIDRCSLRDYDDGLIDITRQSTDITVSRC+
Sbjct: 103 EHIIICNLEFESGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRQSTDITVSRCF 162

Query: 126 FTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYA 185
           FTQHDKTMLIGADPSHVGDRCIRVTIHHC FDGTRQRHPRLRFGKVHLYNNYTRNWGIYA
Sbjct: 163 FTQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNWGIYA 222

Query: 186 VCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLT 245
           VCASVESQIYSQCNIYEAG+KK+TFEYYTEKAADK E KSGL+RSEGD FL GAQ   LT
Sbjct: 223 VCASVESQIYSQCNIYEAGEKKKTFEYYTEKAADKEETKSGLVRSEGDAFLNGAQPCFLT 282

Query: 246 GVGEECVFHPSEYYPTWTMEAPSDSLKQIL 275
           G GEECVFHPSEYY TWTMEAPSDSLK+++
Sbjct: 283 GNGEECVFHPSEYYQTWTMEAPSDSLKEVI 312

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520933|gb|AFK48528.1| unknown [Lotus japonicus]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/286 (84%), Positives = 261/286 (91%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
             DDGPGSLREGCRR++PLWIVF+VSGTIHL SYLSVSSYKT+DGRGQRIK TGKGLRLK
Sbjct: 42  LADDGPGSLREGCRRKDPLWIVFQVSGTIHLQSYLSVSSYKTVDGRGQRIKFTGKGLRLK 101

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEH+I+CNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDIT+SR
Sbjct: 102 ECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISR 161

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           C+F  HDKTMLIGADPSHVGDRCIRVTIHHC FDGTRQRHPR+RFGKVHLYNNYTRNWGI
Sbjct: 162 CHFASHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGI 221

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVESQIYSQCNIYEAG KK+TFE+YTEKAADK E K+G + SEGD+FL GAQ  L
Sbjct: 222 YAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADKEEQKTGFLISEGDMFLNGAQPCL 281

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD 289
            T   EE +FHPSEYYPTWTMEA  +SL+ ILQ+CTGWQSI RP D
Sbjct: 282 PTEYKEESMFHPSEYYPTWTMEAADNSLRDILQLCTGWQSICRPED 327

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483499|gb|ABK93648.1| unknown [Populus trichocarpa]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/290 (83%), Positives = 265/290 (91%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
             DDGPGSLR+GCR++EPLWIVFEVSGTI L SYL+VSSYKTIDGRGQRIKLTGKGLRLK
Sbjct: 95  LADDGPGSLRDGCRKKEPLWIVFEVSGTIQLRSYLNVSSYKTIDGRGQRIKLTGKGLRLK 154

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEHVIICNLEFEGGRG DVDGIQIKP S+HIWIDRCSLRDYDDGLIDITR+STDIT+SR
Sbjct: 155 ECEHVIICNLEFEGGRGPDVDGIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISR 214

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           CYF QHDKTMLIGADP+HVGDRCIRVTIHHC FDGTRQRHPR+RFGKVHLYNNYTRNWGI
Sbjct: 215 CYFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGI 274

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVESQIYSQ NIYEAGQKK  F+Y +EKAADK +A+SG IRSEGD+F+ G QA L
Sbjct: 275 YAVCASVESQIYSQSNIYEAGQKKIAFKYLSEKAADKEKARSGSIRSEGDLFVTGTQAGL 334

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIA 293
           +T  GE C+FHPSEYYPTWT+E P+DSLKQ+LQ CTGWQ +PRPAD  +A
Sbjct: 335 MTEDGECCMFHPSEYYPTWTVEPPTDSLKQVLQHCTGWQCVPRPADQPLA 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448815|ref|XP_002276049.1| PREDICTED: probable pectate lyase 4 [Vitis vinifera] gi|296086942|emb|CBI33175.3| unnamed protein product [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 250/290 (86%), Positives = 271/290 (93%)

Query: 4   FIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
             DDGPGSLREGCRR+EPLWIVFE+SGTI+LSSYLSVSSYKTIDGRGQRIK TGKGLRLK
Sbjct: 41  LADDGPGSLREGCRRQEPLWIVFEISGTINLSSYLSVSSYKTIDGRGQRIKFTGKGLRLK 100

Query: 64  ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           ECEH+IICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSL DYDDGLIDITRQSTDITVSR
Sbjct: 101 ECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLHDYDDGLIDITRQSTDITVSR 160

Query: 124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
           CYF+QHDKTMLIGADPSH+GDRCIRVTIHHC FDGTRQR PR+RFGKVHLYNNYTRNW +
Sbjct: 161 CYFSQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWSV 220

Query: 184 YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 243
           YAVCASVESQIYSQ NIYEAG+KK  F+YYTE AAD  EAKSGLIRSEGD+FL GAQ+ L
Sbjct: 221 YAVCASVESQIYSQNNIYEAGEKKVAFKYYTEMAADMEEAKSGLIRSEGDLFLSGAQSCL 280

Query: 244 LTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPADVMIA 293
           LTG+GEEC+FHPSEYYPTWT+E  SDSLK +LQ+CTGWQ+IPRPA++M +
Sbjct: 281 LTGIGEECIFHPSEYYPTWTIELASDSLKNVLQVCTGWQAIPRPAELMTS 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2100651	331	AT3G55140 [Arabidopsis thalian	0.965	0.858	0.859	1.3e-139
TAIR|locus:2074999	378	AT3G09540 [Arabidopsis thalian	0.962	0.748	0.704	4.2e-111
TAIR|locus:2204232	368	AT1G30350 [Arabidopsis thalian	0.778	0.622	0.396	7.8e-39
TAIR|locus:2162182	392	AT5G55720 [Arabidopsis thalian	0.782	0.586	0.402	1.3e-36
TAIR|locus:2179949	518	AT5G04310 [Arabidopsis thalian	0.547	0.310	0.403	1.9e-36
TAIR|locus:2082667	501	PMR6 "powdery mildew resistant	0.778	0.457	0.413	5.7e-36
TAIR|locus:2086656	412	AT3G27400 [Arabidopsis thalian	0.673	0.480	0.364	1.4e-35
TAIR|locus:2161992	432	AT5G63180 [Arabidopsis thalian	0.534	0.363	0.402	1.4e-33
TAIR|locus:2120643	394	AT4G22090 [Arabidopsis thalian	0.523	0.390	0.391	1.6e-33
TAIR|locus:2154384	417	AT5G48900 [Arabidopsis thalian	0.534	0.376	0.415	1.7e-33

TAIR|locus:2100651 AT3G55140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1366 (485.9 bits), Expect = 1.3e-139, P = 1.3e-139
 Identities = 244/284 (85%), Positives = 267/284 (94%)

Query:     6 DDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKEC 65
             DDGPG+LREG RR+EPLWIVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLKEC
Sbjct:    43 DDGPGTLREGGRRKEPLWIVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKEC 102

Query:    66 EHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCY 125
             EH+IICNLEFEGGRGHDVDGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCY
Sbjct:   103 EHIIICNLEFEGGRGHDVDGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCY 162

Query:   126 FTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYA 185
             F QHDKTMLIGADPSHV DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGIYA
Sbjct:   163 FAQHDKTMLIGADPSHVEDRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYA 222

Query:   186 VCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLT 245
             VCASVE+Q++SQCNIYEAG KK+TFEYY+EKAADK EA++GL+RSE D+FL GAQ  L+T
Sbjct:   223 VCASVEAQVFSQCNIYEAGVKKKTFEYYSEKAADKEEARTGLVRSENDLFLNGAQPSLMT 282

Query:   246 GVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD 289
             G  EECVFHPSE+YPTWT+E PS++LKQI+QICTGWQS+ RP+D
Sbjct:   283 GASEECVFHPSEHYPTWTVEPPSETLKQIMQICTGWQSLSRPSD 326

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2074999 AT3G09540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1097 (391.2 bits), Expect = 4.2e-111, P = 4.2e-111
 Identities = 200/284 (70%), Positives = 239/284 (84%)

Query:     6 DDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKEC 65
             D+GPGSLRE C+R EPLWIVF+VSGTI+LSS+++VSS+ T+DGRGQ++K+TGKGLRLKEC
Sbjct:    90 DEGPGSLREACKRPEPLWIVFDVSGTINLSSFVNVSSHTTVDGRGQKVKITGKGLRLKEC 149

Query:    66 EHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCY 125
             E+VIICNLEFEGG G D D IQIKP S +IWIDRCSL++Y DGLIDITR+STDITVSRC+
Sbjct:   150 ENVIICNLEFEGGVGPDADAIQIKPKSHNIWIDRCSLKNYYDGLIDITRESTDITVSRCH 209

Query:   126 FTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYA 185
             F  H+KTMLIGAD SHV DRCIRVTIHHC FDGTRQRHPR+RF KVHL+NNYTR+W IYA
Sbjct:   210 FMNHNKTMLIGADTSHVTDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLFNNYTRHWAIYA 269

Query:   186 VCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLT 245
             V A VESQI+SQCNIYEAG+KK  F+Y TEKAADK +  +G +RSEGD+ L GA++ L  
Sbjct:   270 VGAGVESQIHSQCNIYEAGEKKTVFKYITEKAADKEKPGAGFVRSEGDLLLNGAKSCLSQ 329

Query:   246 GVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSIPRPAD 289
             G GE  VF P ++Y  WT+E+P+D LK  L+  TGWQ++P P D
Sbjct:   330 G-GERYVFSPIQHYSEWTVESPTDILKNYLKHSTGWQNLPLPLD 372

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2204232 AT1G30350 [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 94/237 (39%), Positives = 138/237 (58%)

Query:     9 PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEH 67
             PG+LR    + +PLWI F     I L S L ++SYKTIDGRG ++++  G  LR+++ +H
Sbjct:    89 PGTLRYAVSQPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKH 148

Query:    68 VIICNLEFEGGR----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
             VII  +     +    G D DGI++   S H+WID C L    DGLID+   ST +T+S 
Sbjct:   149 VIIHGISIHDCKADPNGMDGDGIRVF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISN 207

Query:   124 CYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFD-GTRQRHPRLRFGKVHLYNNYTRNWG 182
              YFTQHDK ML+G D S++GD+ +RVTI    F  G  +R PR+R G  H+ NN    W 
Sbjct:   208 NYFTQHDKVMLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQ 267

Query:   183 IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 239
             +YA+  S    I+S+ N + A +K R+ +  T++     ++K     +  D+F+ GA
Sbjct:   268 MYAIGGSANPIIFSEGNYFVAPEK-RSSKQVTKRMMAGPDSKRWKWGTSRDVFMNGA 323

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2162182 AT5G55720 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 99/246 (40%), Positives = 131/246 (53%)

Query:     9 PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEH 67
             PG+LR    + +PLWI+F+    I L   L V+SYKTIDGRG  +++  G  L L +  +
Sbjct:   103 PGTLRYAATQDQPLWIIFDRDMVIQLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSN 162

Query:    68 VIICNLEFEG------------GRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ 115
             +II NL                G   D DGI I   SR IWID C+L    DGLID    
Sbjct:   163 IIINNLYIHDCVPVKRNALSSLGGYSDGDGISIF-ESRDIWIDHCTLEKCYDGLIDAVNG 221

Query:   116 STDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLY 174
             STDIT+S  Y   H++ ML+G    + GDR +RVTI    F +G  QR PR R G  H+ 
Sbjct:   222 STDITISNSYMLNHNEVMLLGHSDEYSGDRDMRVTIAFNYFGEGLVQRMPRCRHGYFHIV 281

Query:   175 NNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEA-KSGLIRSEGD 233
             NN  R+W +YA+  S    I+SQ N++ A   + T E    ++AD  E  K    +SEGD
Sbjct:   282 NNIYRDWKMYAIGGSANPTIFSQGNVFIASNNQFTKEVTKRESADGDEEWKEWNWKSEGD 341

Query:   234 IFLKGA 239
               + GA
Sbjct:   342 EMVNGA 347

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
 Identities = 67/166 (40%), Positives = 90/166 (54%)

Query:    77 GGRG-HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLI 135
             G RG  D DGI +   S HIW+D CSL    DGLID+   ST +T+S  YF+ HD+ ML+
Sbjct:   235 GFRGVSDGDGISVSA-SHHIWVDHCSLGYCADGLIDVILASTAVTISNNYFSHHDEVMLL 293

Query:   136 GADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQI 194
             G D  +  D+ ++VTI    F +G  QR PR R G +H+ NN    W +YA+  S    I
Sbjct:   294 GHDDRYTADKGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTAWEMYAIGGSASPTI 353

Query:   195 YSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLI-RSEGDIFLKGA 239
              SQ N Y A       E  T++     +  SG   R+EGD+ + GA
Sbjct:   354 NSQGNRYTAPIDPNAKEV-TKRVDSNEKHWSGWNWRTEGDVMVNGA 398

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 101/244 (41%), Positives = 132/244 (54%)

Query:     9 PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG-LRLKECEH 67
             PG+LR G  + EPLWIVF  +  I L   L ++SYKT+DGRG  + +TG G L L+  +H
Sbjct:   134 PGTLRYGVIQEEPLWIVFSSNMLIRLKQELIINSYKTLDGRGSAVHITGNGCLTLQYVQH 193

Query:    68 VIICNLEF-----EGG---RGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTD 118
             +II NL         G   RG  D DGI I   S+ IW+D CS+    DGLID    ST 
Sbjct:   194 IIIHNLHIYDCKPSAGFEKRGRSDGDGISIF-GSQKIWVDHCSMSHCTDGLIDAVMGSTA 252

Query:   119 ITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNY 177
             IT+S  YFT HD+ ML+G D ++  D  ++VTI    F  G  QR PR R G +H+ NN 
Sbjct:   253 ITISNNYFTHHDEVMLLGHDDNYAPDTGMQVTIAFNHFGQGLVQRMPRCRRGYIHVVNND 312

Query:   178 TRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEK--AADKLEAKSGLIRSEGDIF 235
                W +YA+  S    I SQ N Y A       E  T++  + D  E  +   R+EGD+ 
Sbjct:   313 FTEWKMYAIGGSGNPTINSQGNRYSAPSDPSAKEV-TKRVDSKDDGEWSNWNWRTEGDLM 371

Query:   236 LKGA 239
               GA
Sbjct:   372 ENGA 375

GO:0005886 "plasma membrane" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0042547 "cell wall modification involved in multidimensional cell growth" evidence=IMP

GO:0046658 "anchored to plasma membrane" evidence=ISS

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
 Identities = 75/206 (36%), Positives = 102/206 (49%)

Query:    82 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 141
             D D + I    +H+WID CSL + DDGLID    ST IT+S  + T HDK ML+G   S+
Sbjct:   210 DGDAVAIF-GGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSY 268

Query:   142 VGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNI 200
               D+ ++VTI    F +G  QR PR R G  H+ NN   +W +YA+  S    IYSQ N 
Sbjct:   269 TQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNR 328

Query:   201 YEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYP 260
             + A   +   E    + A + + +    RSEGD+ L GA  +     G E    PS Y  
Sbjct:   329 FLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFR---ESGAEA---PSTYAR 382

Query:   261 TWTMEAPSDSLKQILQICTGWQSIPR 286
               ++ A   SL   +    G  S  R
Sbjct:   383 ASSLSARPSSLVGSITTTAGTLSCRR 408

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
 Identities = 64/159 (40%), Positives = 89/159 (55%)

Query:    82 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 141
             D DG+ I   S H+W+D CSL + +DGLID  R ST IT+S  Y T H+K ML+G   ++
Sbjct:   228 DGDGVSIFGGS-HVWVDHCSLSNCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTY 286

Query:   142 VGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNI 200
               D+ ++VTI    F +G  QR PR R G  H+ NN   +W +YA+  S    I SQ N 
Sbjct:   287 EQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNR 346

Query:   201 YEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 239
             + A     + E    + A + E ++   RSEGD+ L GA
Sbjct:   347 FLAPDDSSSKEVTKHEDAPEDEWRNWNWRSEGDLLLNGA 385

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2120643 AT4G22090 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
 Identities = 65/166 (39%), Positives = 89/166 (53%)

Query:    79 RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD 138
             +G D D I I  +S ++WID C L    DGLID+   ST IT+S  YFTQHDK ML+G +
Sbjct:   189 KGSDGDAITIFGSS-NVWIDHCYLASCTDGLIDVIHASTAITISNNYFTQHDKVMLLGHN 247

Query:   139 PSHVGDRCIRVTIHHCLFD-GTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQ 197
              + V D  ++VT+    F  G  +R PR+R G  H+ NN    W +YA+  S +  I+S+
Sbjct:   248 DNFVKDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSADPTIFSE 307

Query:   198 CNIYEAGQKKRTFEYYTEKAADKLEAKSGLI----RSEGDIFLKGA 239
              N + A  K      Y+ K   K E K G      R+  D+F  GA
Sbjct:   308 GNYFIASDKS-----YS-KEVTKREVKGGWNNWRWRTSNDVFKNGA 347

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
 Identities = 66/159 (41%), Positives = 89/159 (55%)

Query:    82 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 141
             D DGI I  +S HIWID  SL +  DGLID    ST IT+S  YFT H++ ML+G   ++
Sbjct:   215 DGDGISIFGSS-HIWIDHNSLSNCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTY 273

Query:   142 VGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNI 200
               D+ ++VTI +  F +G  QR PR R G  H+ NN   +W +YA+  S    I SQ N 
Sbjct:   274 TRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNR 333

Query:   201 YEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA 239
             Y A + +   E      A + + +    RSEGD+FL GA
Sbjct:   334 YLAPRNRFAKEVTKRDYAGQWQWRHWNWRSEGDLFLNGA 372

GO:0005576 "extracellular region" evidence=ISM

GO:0016829 "lyase activity" evidence=ISS

GO:0030570 "pectate lyase activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0040007 "growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VIII1759	SubName- Full=Putative uncharacterized protein; (327 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00011207	hypothetical protein (558 aa)			•			•			0.931
	eugene3.00280097	RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)			•			•			0.931
	gw1.XIII.724.1	pectinesterase family protein (EC-3.1.1.11) (512 aa)			•			•			0.930
	eugene3.00140126	hypothetical protein (514 aa)			•			•			0.930
	eugene3.00030462	hypothetical protein (580 aa)			•			•			0.930
	fgenesh4_pm.C_LG_II000883	hypothetical protein (450 aa)			•			•			0.930
	estExt_fgenesh4_pm.C_LG_VII0457	pectinesterase family protein (EC-3.1.1.11) (340 aa)			•			•			0.930
	gw1.X.3259.1	pectinesterase family protein (EC-3.1.1.11) (555 aa)			•			•			0.929
	estExt_fgenesh4_pg.C_LG_XI0229	RecName- Full=Pectinesterase; EC=3.1.1.11; (549 aa)			•			•			0.928
	estExt_fgenesh4_pg.C_1450045	pectinesterase family protein (EC-3.1.1.11) (381 aa)			•			•			0.928

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
smart00656	190	smart00656, Amb_all, Amb_all domain	3e-71
COG3866	345	COG3866, PelB, Pectate lyase [Carbohydrate transpo	1e-47
pfam00544	200	pfam00544, Pec_lyase_C, Pectate lyase	8e-41

>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain

 Score =  217 bits (556), Expect = 3e-71
 Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 13/179 (7%)

Query: 38  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR---GHDVDGIQIKPNSRH 94
           + ++S KTIDGRG ++++ G GL +K   +VII NL     +   G D D I I   S +
Sbjct: 12  IIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSN 70

Query: 95  IWIDRCSLRD---------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDR 145
           +WID  SL             DGLIDI   ST +T+S  YF  H K ML+G   S   D 
Sbjct: 71  VWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG 130

Query: 146 CIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG 204
            +RVTI H  F   RQR PR+RFG VH+YNNY   W  YA+   + + I S+ N +EA 
Sbjct: 131 KMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190

>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism]

 Score =  162 bits (411), Expect = 1e-47
 Identities = 87/269 (32%), Positives = 127/269 (47%), Gaps = 32/269 (11%)

Query: 21  PLWIVFEVSGTIHLSS------YLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLE 74
              ++  V GTI  S+       + + S KTI G G    L G GL++++  +VII NL 
Sbjct: 74  KYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLT 133

Query: 75  FEGGRGHD--VDGIQIKPNSRHIWIDRCSLRDYD--------DGLIDITRQSTDITVSRC 124
           FEG    D   D I I  +  +IWID  +             DGL+DI + +  IT+S  
Sbjct: 134 FEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYN 193

Query: 125 YFTQHDKTMLIG-ADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI 183
            F  HDK+ L+G +D S+  D   +VTIHH  F    QR PR+RFG VH+YNNY      
Sbjct: 194 KFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPK 253

Query: 184 Y--AVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQA 241
           +  A+     ++IY + N +E G +   F         K    SG    +   +L  +++
Sbjct: 254 FGVAITIGTSAKIYVENNYFENGSEGLGF------LDTK--GTSGYANQDSGSYLNSSKS 305

Query: 242 QLLTGVGEECVF-HPSEYYPTWTMEAPSD 269
                V    V  +PS YY  +T++ P D
Sbjct: 306 ---MSVRAGGVTWNPSSYYS-YTVDPPED 330

Length = 345

>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase

 Score =  140 bits (354), Expect = 8e-41
 Identities = 76/195 (38%), Positives = 100/195 (51%), Gaps = 21/195 (10%)

Query: 25  VFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKE-CEHVIICNLEFE------- 76
           V   + TI   + ++V + KTI GRG  + L   G+R+ +   +VII NL          
Sbjct: 5   VITSNKTIDSLTKVNVGANKTIIGRGANVSLANIGIRITKNSSNVIIQNLRIHHNIRVNP 64

Query: 77  --GGRGH--DVDGIQIKPNSRHIWIDRCSLRDYD--------DGLIDITRQSTDITVSRC 124
              G G   D D IQI  NS +IWID CSL  ++        DGL+DI   ST +T+S C
Sbjct: 65  HHEGPGGAKDGDAIQID-NSGNIWIDHCSLSGHNFSDDDGSFDGLVDIKEGSTYVTISNC 123

Query: 125 YFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIY 184
            FT H K ML G   S+  D+ +RVT+ H  F+   QR PR R+G  H+YNN   NW  Y
Sbjct: 124 LFTNHKKVMLFGHSDSNSQDKGMRVTLAHNYFNNVNQRMPRCRYGYFHVYNNLYVNWFQY 183

Query: 185 AVCASVESQIYSQCN 199
           A   S    I S+ N
Sbjct: 184 AFGGSQNGTILSEGN 198

This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	100.0
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	100.0
smart00656	190	Amb_all Amb_all domain.	100.0
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	99.31
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	99.03
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	98.73
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	98.51
PLN02218	431	polygalacturonase ADPG	98.45
PLN03003	456	Probable polygalacturonase At3g15720	98.43
PLN02155	394	polygalacturonase	98.4
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	98.38
PLN02793	443	Probable polygalacturonase	98.37
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	98.34
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	98.32
PLN02218	431	polygalacturonase ADPG	98.27
PLN03010	409	polygalacturonase	98.12
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	98.09
PLN03010	409	polygalacturonase	98.06
PLN02793	443	Probable polygalacturonase	97.99
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	97.94
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	97.91
PLN02480	343	Probable pectinesterase	97.88
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.82
PLN03003	456	Probable polygalacturonase At3g15720	97.81
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	97.78
PF01696	386	Adeno_E1B_55K: Adenovirus EB1 55K protein / large	97.74
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	97.63
PLN02155	394	polygalacturonase	97.6
PLN02432	293	putative pectinesterase	97.55
PLN02170	529	probable pectinesterase/pectinesterase inhibitor	97.53
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	97.5
PLN02176	340	putative pectinesterase	97.41
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	97.37
PLN03043	538	Probable pectinesterase/pectinesterase inhibitor;	97.34
PLN02416	541	probable pectinesterase/pectinesterase inhibitor	97.31
PLN02665	366	pectinesterase family protein	97.3
PLN02682	369	pectinesterase family protein	97.29
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	97.25
PLN02217	670	probable pectinesterase/pectinesterase inhibitor	97.25
PLN02995	539	Probable pectinesterase/pectinesterase inhibitor	97.23
PLN02773	317	pectinesterase	97.21
PLN02488	509	probable pectinesterase/pectinesterase inhibitor	97.2
PLN02304	379	probable pectinesterase	97.18
smart00656	190	Amb_all Amb_all domain.	97.14
PLN02497	331	probable pectinesterase	97.12
PLN02713	566	Probable pectinesterase/pectinesterase inhibitor	97.12
PLN02990	572	Probable pectinesterase/pectinesterase inhibitor	97.06
PLN02301	548	pectinesterase/pectinesterase inhibitor	97.04
PLN02708	553	Probable pectinesterase/pectinesterase inhibitor	97.01
PLN02201	520	probable pectinesterase/pectinesterase inhibitor	97.0
PLN02197	588	pectinesterase	96.95
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	96.95
PLN02314	586	pectinesterase	96.92
PF01095	298	Pectinesterase: Pectinesterase; InterPro: IPR00007	96.9
PLN02933	530	Probable pectinesterase/pectinesterase inhibitor	96.89
PLN02634	359	probable pectinesterase	96.85
PLN02745	596	Putative pectinesterase/pectinesterase inhibitor	96.82
PLN02313	587	Pectinesterase/pectinesterase inhibitor	96.81
PLN02506	537	putative pectinesterase/pectinesterase inhibitor	96.81
PLN02468	565	putative pectinesterase/pectinesterase inhibitor	96.8
PLN02916	502	pectinesterase family protein	96.79
PLN02484	587	probable pectinesterase/pectinesterase inhibitor	96.64
PRK10531	422	acyl-CoA thioesterase; Provisional	96.6
PLN02671	359	pectinesterase	96.58
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	96.31
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	96.07
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	95.91
PF08480	198	Disaggr_assoc: Disaggregatase related; InterPro: I	95.03
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	94.83
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	94.05
COG4677	405	PemB Pectin methylesterase [Carbohydrate transport	91.88
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	86.59
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	85.06
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	84.15
TIGR03804	44	para_beta_helix parallel beta-helix repeat (two co	81.48

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.2e-58  Score=416.32  Aligned_cols=262  Identities=32%  Similarity=0.549  Sum_probs=218.0

Q ss_pred             chHHHHhhcCCCeEEEEEeceEEEeC------ceeEeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCCCCC-
Q 022635           10 GSLREGCRRREPLWIVFEVSGTIHLS------SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHD-   82 (294)
Q Consensus        10 GsLr~a~~~~~P~~Ivf~v~G~I~l~------~~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~~~-   82 (294)
                      -.|..++.+.+|.++++.|.|+|+++      -.|++.+||||+|.|...+|.|++|.|+.+.|||||||+|++....+ 
T Consensus        63 ~~l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~  142 (345)
T COG3866          63 NDLETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDP  142 (345)
T ss_pred             HHHHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCC
Confidence            35888899999997777899999998      34677799999999999999999999999999999999999865444 


Q ss_pred             -CCceEEcCCCceEEEEceeecC--------CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC-CCCcceEEEEE
Q 022635           83 -VDGIQIKPNSRHIWIDRCSLRD--------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIH  152 (294)
Q Consensus        83 -~D~i~i~~~~~~vwIDHcs~s~--------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~-~~d~~~~vT~h  152 (294)
                       .|+|+|+..++|||||||+|..        ..||++|+++++++||||||+|++|+|++|+|.+|+. .+|++++||+|
T Consensus       143 ~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~h  222 (345)
T COG3866         143 NYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIH  222 (345)
T ss_pred             CCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEe
Confidence             4999997689999999999998        6899999999999999999999999999999999875 45678999999


Q ss_pred             ceeecCCCCCcceeecCeEEEEcceEeCccceeEEecCC--ceEEEEceEEEcCCccceeeeehhcccccccCCcceEEE
Q 022635          153 HCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVE--SQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRS  230 (294)
Q Consensus       153 hN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~--~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G~~~~  230 (294)
                      ||||.|+.+|+||+|||.+|+|||||.....|++..+++  |++++|+|||+.+..+..+  +.      ....+||+..
T Consensus       223 hNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f--~d------t~~~~GY~~~  294 (345)
T COG3866         223 HNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGF--LD------TKGTSGYANQ  294 (345)
T ss_pred             ccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEEEecceeccCCCCcee--ee------cCCccceEEe
Confidence            999999999999999999999999999766555555555  9999999999998665443  21      1112499885


Q ss_pred             eCCeEeeCceeeecccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCCC
Q 022635          231 EGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       231 ~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~  283 (294)
                      +-+-|++.+.....  ...+..|.|+.+|+ |++++++ .+|++|.++||++.
T Consensus       295 d~gsy~~~s~~~~~--~~~G~~w~ps~~Y~-Ytvd~~~-dVks~Vt~yAGaGk  343 (345)
T COG3866         295 DSGSYLNSSKSMSV--RAGGVTWNPSSYYS-YTVDPPE-DVKSFVTNYAGAGK  343 (345)
T ss_pred             ccCceecccCCccc--ccCCccCCCCCCcc-cccCChH-Hhhhhhhcccccee
Confidence            44445444322111  12347899999995 9999995 79999999999764

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=100.00  E-value=2.7e-53  Score=375.70  Aligned_cols=177  Identities=46%  Similarity=0.737  Sum_probs=158.1

Q ss_pred             EEEEeceEEEeCceeEeccCeEEEeeccceEEEcCCEEEe-eeccEEEEeeEEEcC----------C--CCCCCceEEcC
Q 022635           24 IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGG----------R--GHDVDGIQIKP   90 (294)
Q Consensus        24 Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~g~gl~i~-~~~NVIirnl~i~~~----------~--~~~~D~i~i~~   90 (294)
                      +||+++|+|+++.+|.|.|||||+|+|.+++|.+.|+.+. +++|||||||+|++.          .  ..+.|+|.++ 
T Consensus         3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~-   81 (200)
T PF00544_consen    3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID-   81 (200)
T ss_dssp             EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred             EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence            4778999999999999999999999999999999999997 899999999999982          1  2678999998 


Q ss_pred             CCceEEEEceeecCC--------CCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCC
Q 022635           91 NSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR  162 (294)
Q Consensus        91 ~~~~vwIDHcs~s~~--------~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R  162 (294)
                      +++|||||||+|+|+        .||++|++.++++||||||+|++|+|++|+|++|....+..++||||||||+++.+|
T Consensus        82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R  161 (200)
T PF00544_consen   82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR  161 (200)
T ss_dssp             STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred             ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence            889999999999999        999999999999999999999999999999998876666669999999999999999


Q ss_pred             cceeecCeEEEEcceEeCccceeEEecCCceEEEEceEE
Q 022635          163 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIY  201 (294)
Q Consensus       163 ~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f  201 (294)
                      +||+|+|++|+|||||+++..|++++++++++++|+|||
T Consensus       162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            999999999999999999999999999999999999999

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>smart00656 Amb_all Amb_all domain

Probab=100.00  E-value=1.9e-49  Score=348.41  Aligned_cols=168  Identities=44%  Similarity=0.712  Sum_probs=157.6

Q ss_pred             ceeEeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCC-------
Q 022635           36 SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDY-------  105 (294)
Q Consensus        36 ~~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~-------  105 (294)
                      .+|.|+|||||+|+|++++|+|.+|.+..++|||||||+|+++..   ++.|+|.++ ++++||||||+|+|+       
T Consensus        10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~   88 (190)
T smart00656       10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD   88 (190)
T ss_pred             ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence            468899999999999999999999999889999999999998764   678999997 899999999999998       


Q ss_pred             --CCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeCccc
Q 022635          106 --DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI  183 (294)
Q Consensus       106 --~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~  183 (294)
                        .|+++|+++++++||||||+|.+|+|++|||++++...+..++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus        89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~  168 (190)
T smart00656       89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS  168 (190)
T ss_pred             CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence              899999999999999999999999999999998876555578999999999999999999999999999999999998


Q ss_pred             eeEEecCCceEEEEceEEEcC
Q 022635          184 YAVCASVESQIYSQCNIYEAG  204 (294)
Q Consensus       184 ~~~~~~~~~~v~~e~N~f~~g  204 (294)
                      |+++++.++++++|+|||++.
T Consensus       169 ~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      169 YAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             EeEecCCCcEEEEECeEEECC
Confidence            999999999999999999864

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=99.31  E-value=2.6e-10  Score=107.71  Aligned_cols=176  Identities=22%  Similarity=0.264  Sum_probs=126.5

Q ss_pred             HHHHhhcCCCeEEEEEeceEEEeCceeEec-cCeEEEeeccc-eEEE-------cCCEEEeeeccEEEEeeEEEcCCCCC
Q 022635           12 LREGCRRREPLWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQR-IKLT-------GKGLRLKECEHVIICNLEFEGGRGHD   82 (294)
Q Consensus        12 Lr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~g-~~i~-------g~gl~i~~~~NVIirnl~i~~~~~~~   82 (294)
                      ||+|+.+..|..+++--.|+.++++.|.|. +++||.|.|.. ..|.       +.+|.+. ++||.|++|+++..   .
T Consensus         1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v~-a~~VtI~~ltI~~~---~   76 (314)
T TIGR03805         1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLVT-SDDVTLSDLAVENT---K   76 (314)
T ss_pred             CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEEE-eCCeEEEeeEEEcC---C
Confidence            689999999887777789999998889997 89999999764 4554       3347665 99999999999874   3


Q ss_pred             CCceEEcCCCceEEEEceeecCC--------CCCeeEeeeCCccEEEEccEEee-cCeeeEecCCCCCCCCcceEEEEEc
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRDY--------DDGLIDITRQSTDITVSRCYFTQ-HDKTMLIGADPSHVGDRCIRVTIHH  153 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~~--------~Dg~id~~~~s~~vTiS~~~f~~-h~~~~liG~~d~~~~d~~~~vT~hh  153 (294)
                      .+||.+. +++++.|.+|.+.|.        .+| |.. ..+++++|.+|.++. ++.+..++.+.        ++.+.+
T Consensus        77 ~~GI~v~-~s~~i~I~n~~i~~~~~~~~~~~~~G-I~~-~~s~~v~I~~n~i~g~~d~GIyv~~s~--------~~~v~n  145 (314)
T TIGR03805        77 GDGVKVK-GSDGIIIRRLRVEWTGGPKSSNGAYG-IYP-VESTNVLVEDSYVRGASDAGIYVGQSQ--------NIVVRN  145 (314)
T ss_pred             CCeEEEe-CCCCEEEEeeEEEeccCccccCCcce-EEE-eccCCEEEECCEEECCCcccEEECCCC--------CeEEEC
Confidence            5799997 889999999999754        455 455 468999999999986 44567777654        578888


Q ss_pred             eeecCCCCCcceee-cCeEEEEcceEeCccceeEEe--------cCCceEEEEceEEEcC
Q 022635          154 CLFDGTRQRHPRLR-FGKVHLYNNYTRNWGIYAVCA--------SVESQIYSQCNIYEAG  204 (294)
Q Consensus       154 N~f~~~~~R~P~~r-~g~~h~~NN~~~n~~~~~~~~--------~~~~~v~~e~N~f~~g  204 (294)
                      |.+.++.. -=.+- -..+.++||.+++.. -++..        .....+.+.+|.|..-
T Consensus       146 N~~~~n~~-GI~i~~S~~~~v~~N~~~~N~-~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n  203 (314)
T TIGR03805       146 NVAEENVA-GIEIENSQNADVYNNIATNNT-GGILVFDLPGLPQPGGSNVRVFDNIIFDN  203 (314)
T ss_pred             CEEccCcc-eEEEEecCCcEEECCEEeccc-eeEEEeecCCCCcCCccceEEECCEEECC
Confidence            87765421 11111 134678888777543 23322        2245777788888644

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=99.03  E-value=8.2e-09  Score=100.21  Aligned_cols=190  Identities=15%  Similarity=0.200  Sum_probs=95.8

Q ss_pred             CchHHHHhhcCCCeEEEEEeceEEEeCceeEec------cCeEEEee-ccceEEEcCC-EEEeeeccEEEEeeEEEcCCC
Q 022635            9 PGSLREGCRRREPLWIVFEVSGTIHLSSYLSVS------SYKTIDGR-GQRIKLTGKG-LRLKECEHVIICNLEFEGGRG   80 (294)
Q Consensus         9 ~GsLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~------sn~TI~G~-g~g~~i~g~g-l~i~~~~NVIirnl~i~~~~~   80 (294)
                      .-+|++||++..|...++..+|+.+ ...|.+.      ..+||..+ ++++.|.|.. |.|. ++.++|++|.|+.+..
T Consensus         4 ~~~lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~GL~F~ng~~   81 (425)
T PF14592_consen    4 VAELQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSGLKFKNGYT   81 (425)
T ss_dssp             HHHHHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE--
T ss_pred             HHHHHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeCeEEecCCC
Confidence            4579999999888877877899999 3356653      46999998 5578888764 7776 7999999999986421


Q ss_pred             CC---------C-------------------------CceEE---cCCCceEEEEceeecCC--CCCeeEee-------e
Q 022635           81 HD---------V-------------------------DGIQI---KPNSRHIWIDRCSLRDY--DDGLIDIT-------R  114 (294)
Q Consensus        81 ~~---------~-------------------------D~i~i---~~~~~~vwIDHcs~s~~--~Dg~id~~-------~  114 (294)
                      ..         .                         +...+   .-.++|--||||.|..-  ..-.+-+.       .
T Consensus        82 ~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~  161 (425)
T PF14592_consen   82 PTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQS  161 (425)
T ss_dssp             -TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE--S--SS--
T ss_pred             CCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEEecccCccc
Confidence            00         0                         00111   00245555799999752  22223322       1


Q ss_pred             CCccEEEEccEEee-------cCeeeEecCCCCCCCCcceEEEEEceeecCCCCCccee--ecCeEEEEcceEeCcccee
Q 022635          115 QSTDITVSRCYFTQ-------HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFGKVHLYNNYTRNWGIYA  185 (294)
Q Consensus       115 ~s~~vTiS~~~f~~-------h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~--r~g~~h~~NN~~~n~~~~~  185 (294)
                      ...+-+|.+|+|..       ...++-||.+.....+  -+.++.+|||.+|.+-.=-+  +-+...++||.+++... .
T Consensus       162 ~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Ntf~es~G-~  238 (425)
T PF14592_consen  162 IANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNTFRESQG-S  238 (425)
T ss_dssp             -----EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-EEES-SS-E
T ss_pred             cccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccEEEeccc-e
Confidence            34577999999984       4456888887543222  27899999999998875444  34566777777766432 2


Q ss_pred             EEecCCceEEEEceEEEc
Q 022635          186 VCASVESQIYSQCNIYEA  203 (294)
Q Consensus       186 ~~~~~~~~v~~e~N~f~~  203 (294)
                      +..+.|-.-.+++|||..
T Consensus       239 ltlRHGn~n~V~gN~FiG  256 (425)
T PF14592_consen  239 LTLRHGNRNTVEGNVFIG  256 (425)
T ss_dssp             EEEEE-SS-EEES-EEEE
T ss_pred             EEEecCCCceEeccEEec
Confidence            333333333345555553

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=98.73  E-value=8.4e-07  Score=83.94  Aligned_cols=142  Identities=16%  Similarity=0.195  Sum_probs=97.1

Q ss_pred             CCEEEeeeccEEEEeeEEEcCCC----CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeee
Q 022635           58 KGLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTM  133 (294)
Q Consensus        58 ~gl~i~~~~NVIirnl~i~~~~~----~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~  133 (294)
                      .++.+.+++|++||++++.....    ...+||.+. .++++.|.+|.++...|--+-+ ..+++++|++|.+.+..++.
T Consensus        78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI  155 (314)
T TIGR03805        78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGI  155 (314)
T ss_pred             CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceE
Confidence            46777889999999999985421    346889887 8999999999999887744666 46899999999998777776


Q ss_pred             EecCCCCCCCCcceEEEEEceeecCCCCCc--------ceeecCeEEEEcceEeCccc----------------eeEEec
Q 022635          134 LIGADPSHVGDRCIRVTIHHCLFDGTRQRH--------PRLRFGKVHLYNNYTRNWGI----------------YAVCAS  189 (294)
Q Consensus       134 liG~~d~~~~d~~~~vT~hhN~f~~~~~R~--------P~~r~g~~h~~NN~~~n~~~----------------~~~~~~  189 (294)
                      .+-.+.        ++.+.+|.+.++..--        |.+....+.+++|.+.+...                .++-..
T Consensus       156 ~i~~S~--------~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~  227 (314)
T TIGR03805       156 EIENSQ--------NADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVM  227 (314)
T ss_pred             EEEecC--------CcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEE
Confidence            665443        4577777776654321        11222356788887654311                122222


Q ss_pred             CCceEEEEceEEEcCCccce
Q 022635          190 VESQIYSQCNIYEAGQKKRT  209 (294)
Q Consensus       190 ~~~~v~~e~N~f~~g~~~~~  209 (294)
                      ...++.+++|.|........
T Consensus       228 ~~~~v~I~~N~i~~n~~~~i  247 (314)
T TIGR03805       228 ANRDVEIFGNVISNNDTANV  247 (314)
T ss_pred             cccceEEECCEEeCCcceeE
Confidence            33677889999987655433

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=98.51  E-value=1.3e-05  Score=78.54  Aligned_cols=112  Identities=17%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             chHHHHhhcCC-CeEEEEEeceEEEeCceeEeccCeEEEeeccceE---EEcCC-EE-EeeeccEEEEeeEEEcCC---C
Q 022635           10 GSLREGCRRRE-PLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIK---LTGKG-LR-LKECEHVIICNLEFEGGR---G   80 (294)
Q Consensus        10 GsLr~a~~~~~-P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~---i~g~g-l~-i~~~~NVIirnl~i~~~~---~   80 (294)
                      -.|++|+++.. |...|.--.|+.. ..+|.+.+++||.|+. +++   |.|.+ +. -..++||.|++|+|++..   .
T Consensus        55 ~ALQaAIdaAa~gG~tV~Lp~G~Y~-~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~  132 (455)
T TIGR03808        55 RALQRAIDEAARAQTPLALPPGVYR-TGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP  132 (455)
T ss_pred             HHHHHHHHHhhcCCCEEEECCCcee-cccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence            36999997733 3332333678773 3779999999999994 343   66554 22 235999999999999754   2


Q ss_pred             CCCCceEEcCCCceEEEEceeecCC-CCCeeEeeeCCccEEEEccEEe
Q 022635           81 HDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        81 ~~~D~i~i~~~~~~vwIDHcs~s~~-~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      ....+|.+. .++++-|.+|+|... ..| +.+. .++ ..|+.|.+.
T Consensus       133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~  176 (455)
T TIGR03808       133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTIT  176 (455)
T ss_pred             CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEe
Confidence            345678885 899999999999988 477 5563 455 444444444

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PLN02218 polygalacturonase ADPG

Probab=98.45  E-value=6.7e-06  Score=80.94  Aligned_cols=100  Identities=21%  Similarity=0.320  Sum_probs=73.4

Q ss_pred             eeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCC
Q 022635           64 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV  142 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~  142 (294)
                      .++||+|++|+|.... ....|||.+. +++||.|.+|.+..+.|- |.++.+++||+|++|.+. +..+.-||+.....
T Consensus       222 ~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDDc-IaIksgs~nI~I~n~~c~-~GHGisIGS~g~~~  298 (431)
T PLN02218        222 KCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDDC-ISIESGSQNVQINDITCG-PGHGISIGSLGDDN  298 (431)
T ss_pred             ceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCce-EEecCCCceEEEEeEEEE-CCCCEEECcCCCCC
Confidence            4566666666666532 3568999997 899999999999988654 899989999999999996 34457788754321


Q ss_pred             -CCcceEEEEEceeecCCCCCcceee
Q 022635          143 -GDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       143 -~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                       .+...+|++.++.|.++. +.=|++
T Consensus       299 ~~~~V~nV~v~n~~~~~t~-nGvRIK  323 (431)
T PLN02218        299 SKAFVSGVTVDGAKLSGTD-NGVRIK  323 (431)
T ss_pred             CCceEEEEEEEccEEecCC-cceEEe
Confidence             222358999999887753 455554

>PLN03003 Probable polygalacturonase At3g15720

Probab=98.43  E-value=1.1e-05  Score=79.60  Aligned_cols=104  Identities=24%  Similarity=0.419  Sum_probs=79.5

Q ss_pred             EEEeeeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635           60 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  138 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~  138 (294)
                      +.+..++||.|++|+|..+. ....|||.+. .++||+|.+|.+..+.|. +.++.+++||+|++|.+.. ..+.-||+.
T Consensus       164 i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSl  240 (456)
T PLN03003        164 IHISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSL  240 (456)
T ss_pred             EEEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeec
Confidence            44556788888888888753 4678999997 899999999999988776 8898899999999999863 346778875


Q ss_pred             CCCC-CCcceEEEEEceeecCCCCCcceee
Q 022635          139 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       139 d~~~-~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                      .... .+...+|++.++.|.++. +.-|++
T Consensus       241 g~~g~~~~V~NV~v~n~~~~~T~-nGvRIK  269 (456)
T PLN03003        241 GKDGETATVENVCVQNCNFRGTM-NGARIK  269 (456)
T ss_pred             cCCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence            4321 223458999999998863 344654

>PLN02155 polygalacturonase

Probab=98.40  E-value=8.6e-06  Score=79.32  Aligned_cols=99  Identities=17%  Similarity=0.322  Sum_probs=72.6

Q ss_pred             eeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC-
Q 022635           64 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH-  141 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~-  141 (294)
                      .++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. +.++.++++|+|++|.+.. ..++-||+.... 
T Consensus       175 ~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g~~~  251 (394)
T PLN02155        175 GCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLAKEL  251 (394)
T ss_pred             CeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEeccccccC
Confidence            4456666666665432 3567999997 899999999999988885 7898889999999999874 446778885322 


Q ss_pred             CCCcceEEEEEceeecCCCCCccee
Q 022635          142 VGDRCIRVTIHHCLFDGTRQRHPRL  166 (294)
Q Consensus       142 ~~d~~~~vT~hhN~f~~~~~R~P~~  166 (294)
                      ......+|++.++.|.++. |.=|+
T Consensus       252 ~~~~V~nV~v~n~~~~~t~-~GirI  275 (394)
T PLN02155        252 NEDGVENVTVSSSVFTGSQ-NGVRI  275 (394)
T ss_pred             CCCcEEEEEEEeeEEeCCC-cEEEE
Confidence            1223358999999998764 44555

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=98.38  E-value=8.9e-06  Score=66.98  Aligned_cols=133  Identities=18%  Similarity=0.281  Sum_probs=88.6

Q ss_pred             CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635           59 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  138 (294)
Q Consensus        59 gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~  138 (294)
                      ||.+....++.|++.+|+..   ..+||.+. .+..+.|+.|+|.+...+ +.+. ...++++++|.|.+...+..+-..
T Consensus         2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~   75 (158)
T PF13229_consen    2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS   75 (158)
T ss_dssp             CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred             EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence            57787788999999999974   57899997 777789999999996666 5663 569999999999987755444432


Q ss_pred             CCCCCCcceEEEEEceeecCCCCCcceee--cCeEEEEcceEeCccceeEEecCCc--eEEEEceEEEcCC
Q 022635          139 PSHVGDRCIRVTIHHCLFDGTRQRHPRLR--FGKVHLYNNYTRNWGIYAVCASVES--QIYSQCNIYEAGQ  205 (294)
Q Consensus       139 d~~~~d~~~~vT~hhN~f~~~~~R~P~~r--~g~~h~~NN~~~n~~~~~~~~~~~~--~v~~e~N~f~~g~  205 (294)
                      .        .+++.+|.+.++..-.=.+.  ...+.+.||.+.+....++......  .+.+++|.|....
T Consensus        76 ~--------~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~  138 (158)
T PF13229_consen   76 S--------NITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG  138 (158)
T ss_dssp             C--------S-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred             C--------CceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence            2        58899998888765443332  2457889998888766666554444  8888899887644

>PLN02793 Probable polygalacturonase

Probab=98.37  E-value=1.4e-05  Score=78.96  Aligned_cols=101  Identities=23%  Similarity=0.322  Sum_probs=72.8

Q ss_pred             eeeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC
Q 022635           63 KECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH  141 (294)
Q Consensus        63 ~~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~  141 (294)
                      ..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. +.++.+++||+|++|.+.. ..+.-||+....
T Consensus       206 ~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSlg~~  282 (443)
T PLN02793        206 TNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSLGKS  282 (443)
T ss_pred             EccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecccCc
Confidence            34566666666666543 3568999997 899999999999977665 7888889999999999863 345778875321


Q ss_pred             -CCCcceEEEEEceeecCCCCCcceee
Q 022635          142 -VGDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       142 -~~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                       ......+|++.++.|.++. +.=|++
T Consensus       283 ~~~~~V~nV~v~n~~~~~t~-~GirIK  308 (443)
T PLN02793        283 NSWSEVRDITVDGAFLSNTD-NGVRIK  308 (443)
T ss_pred             CCCCcEEEEEEEccEEeCCC-ceEEEE
Confidence             1122358999999888764 455554

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=98.34  E-value=1.9e-05  Score=77.20  Aligned_cols=99  Identities=21%  Similarity=0.373  Sum_probs=72.3

Q ss_pred             eeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC-
Q 022635           64 ECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH-  141 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~-  141 (294)
                      .++||.|++|+|.... ....|||.++ .+++|+|.+|.+..+.|. +.++.++++|+|+++... +.-++-||+-... 
T Consensus       185 ~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDDc-Iaiksg~~nI~I~n~~c~-~ghGisiGSlG~~~  261 (404)
T PLN02188        185 ECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDDC-ISIGQGNSQVTITRIRCG-PGHGISVGSLGRYP  261 (404)
T ss_pred             ccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCcE-EEEccCCccEEEEEEEEc-CCCcEEeCCCCCCC
Confidence            4566666666666532 3568999997 899999999999988885 889889999999999885 3446778873221 


Q ss_pred             CCCcceEEEEEceeecCCCCCccee
Q 022635          142 VGDRCIRVTIHHCLFDGTRQRHPRL  166 (294)
Q Consensus       142 ~~d~~~~vT~hhN~f~~~~~R~P~~  166 (294)
                      ......+|++.++.|.++. +.=|+
T Consensus       262 ~~~~V~nV~v~n~~~~~t~-~Giri  285 (404)
T PLN02188        262 NEGDVTGLVVRDCTFTGTT-NGIRI  285 (404)
T ss_pred             cCCcEEEEEEEeeEEECCC-cEEEE
Confidence            1122358999999988763 34444

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=98.32  E-value=7.7e-05  Score=65.40  Aligned_cols=101  Identities=20%  Similarity=0.282  Sum_probs=66.3

Q ss_pred             hHHHHh--hcCCCeEEEEEeceEEEeCceeEeccCeEEEeeccce-EEE--cC--CE-------EEee-ecc--EEEEee
Q 022635           11 SLREGC--RRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRI-KLT--GK--GL-------RLKE-CEH--VIICNL   73 (294)
Q Consensus        11 sLr~a~--~~~~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~-~i~--g~--gl-------~i~~-~~N--VIirnl   73 (294)
                      .|++|+  .+....-+|+-..|++.++.+|.+.++++|.|.|... .+.  +.  .+       .+.. ..+  +.|+||
T Consensus        20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl   99 (225)
T PF12708_consen   20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL   99 (225)
T ss_dssp             HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred             HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence            589999  4444445555589999999999999999999997643 343  11  11       1211 122  449999


Q ss_pred             EEEcCCCC---CCCceEEcCCCceEEEEceeecCCCCCeeEe
Q 022635           74 EFEGGRGH---DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDI  112 (294)
Q Consensus        74 ~i~~~~~~---~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~  112 (294)
                      +|......   ...+|.+. .+++++|++|++.......+.+
T Consensus       100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~  140 (225)
T PF12708_consen  100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYF  140 (225)
T ss_dssp             EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEE
T ss_pred             EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEE
Confidence            99987532   24678886 7899999999999864444555

...

>PLN02218 polygalacturonase ADPG

Probab=98.27  E-value=0.00014  Score=71.61  Aligned_cols=134  Identities=17%  Similarity=0.164  Sum_probs=91.9

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  134 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l  134 (294)
                      |.+.+++|+.|++|+|+....   =.|.+. .+++|.|++.++..     ..|| ||+ ..+++|+|++|.|...+-+.-
T Consensus       195 i~f~~~~nv~I~gitl~nSp~---w~i~~~-~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa  268 (431)
T PLN02218        195 LTFYNSKSLIVKNLRVRNAQQ---IQISIE-KCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS  268 (431)
T ss_pred             EEEEccccEEEeCeEEEcCCC---EEEEEE-ceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence            566789999999999998643   467776 89999999999854     6799 899 479999999999998888887


Q ss_pred             ecCCCCCCCCcceEEEEEceeecCCCC-------Cccee-ecCeEEEEcceEeCccceeEE-----e--cCCceEEEEce
Q 022635          135 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVC-----A--SVESQIYSQCN  199 (294)
Q Consensus       135 iG~~d~~~~d~~~~vT~hhN~f~~~~~-------R~P~~-r~g~~h~~NN~~~n~~~~~~~-----~--~~~~~v~~e~N  199 (294)
                      |.+..       .+|++.++++....+       +.+.- ..-.+++.|+.+.+.. .++.     +  +.-..|.+++.
T Consensus       269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni  340 (431)
T PLN02218        269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI  340 (431)
T ss_pred             ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence            76542       268888887743322       11100 0114567777666543 2331     1  22246677777


Q ss_pred             EEEcCCcc
Q 022635          200 IYEAGQKK  207 (294)
Q Consensus       200 ~f~~g~~~  207 (294)
                      .+++...+
T Consensus       341 ~m~~V~~p  348 (431)
T PLN02218        341 QMENVKNP  348 (431)
T ss_pred             EEEccccc
Confidence            77776554

>PLN03010 polygalacturonase

Probab=98.12  E-value=0.001  Score=65.26  Aligned_cols=119  Identities=25%  Similarity=0.455  Sum_probs=76.1

Q ss_pred             cCeEEEeeccceEEEcCC------EEEeeeccEEEEeeEEEcC-----------------------C-CCCCCceEEcCC
Q 022635           42 SYKTIDGRGQRIKLTGKG------LRLKECEHVIICNLEFEGG-----------------------R-GHDVDGIQIKPN   91 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~g------l~i~~~~NVIirnl~i~~~-----------------------~-~~~~D~i~i~~~   91 (294)
                      .+++|.|.|   +|.|.|      |.+.+++|+.|++|+++..                       . ....|||.+. .
T Consensus       139 ~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~-~  214 (409)
T PLN03010        139 SGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDIS-Y  214 (409)
T ss_pred             cccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeee-c
Confidence            345555542   455544      4555566666666666533                       1 2467999997 8


Q ss_pred             CceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC-CCCcceEEEEEceeecCCCCCcceee
Q 022635           92 SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus        92 ~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~-~~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                      +++|+|.+|.+..+.|. +.++.++++++|.++... ..-+.-||+.... ..+...+|++.++.|.++. +.-|++
T Consensus       215 s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~-~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIK  288 (409)
T PLN03010        215 STNINIFDSTIQTGDDC-IAINSGSSNINITQINCG-PGHGISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIK  288 (409)
T ss_pred             cceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeE-CcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEE
Confidence            99999999999887555 888888878777766664 2335667765332 1122357899988887653 344443

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=98.09  E-value=3e-05  Score=73.62  Aligned_cols=104  Identities=26%  Similarity=0.482  Sum_probs=73.3

Q ss_pred             EEEeeeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635           60 LRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  138 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~  138 (294)
                      +.+..++||.|++|+|+... ....|||.+. ++++|.|++|.+..+.|. +.++.++.+|+|++|.|.. ..+.-+|+.
T Consensus       118 ~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS~  194 (326)
T PF00295_consen  118 IHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGSE  194 (326)
T ss_dssp             EEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEEE
T ss_pred             EEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeeec
Confidence            44456777777777777643 3568999997 899999999999887665 8888777799999999973 445777764


Q ss_pred             CCCC-CCcceEEEEEceeecCCCCCcceee
Q 022635          139 PSHV-GDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       139 d~~~-~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                      .... ...-.+|+|.++.+.++. |.-|++
T Consensus       195 ~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK  223 (326)
T PF00295_consen  195 GSGGSQNDIRNVTFENCTIINTD-NGIRIK  223 (326)
T ss_dssp             SSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred             cCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence            3221 111248999999888764 555554

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN03010 polygalacturonase

Probab=98.06  E-value=0.00039  Score=68.10  Aligned_cols=110  Identities=20%  Similarity=0.245  Sum_probs=64.1

Q ss_pred             EEEEeceEEEeCceeEe----cc--CeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCC----------CCCCCceE
Q 022635           24 IVFEVSGTIHLSSYLSV----SS--YKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR----------GHDVDGIQ   87 (294)
Q Consensus        24 Ivf~v~G~I~l~~~l~v----~s--n~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~----------~~~~D~i~   87 (294)
                      |.|.+.|+|.....+.-    ..  .+...++ .+++|.|.|..=.+.. .-.+-|+|....          ....=.|.
T Consensus       107 v~l~l~G~l~~~~d~~~w~~~~~~~wi~f~~v-~nv~I~G~G~IDG~G~-~ww~~l~~~~~~nv~v~gitl~nsp~~~i~  184 (409)
T PLN03010        107 IKVQLDGIIVAPSNIVAWSNPKSQMWISFSTV-SGLMIDGSGTIDGRGS-SFWEALHISKCDNLTINGITSIDSPKNHIS  184 (409)
T ss_pred             EEEEEccEEEccCChhhccCCCCcceEEEecc-cccEEeeceEEeCCCc-cccceEEEEeecCeEEeeeEEEcCCceEEE
Confidence            67777788887654311    11  2333332 5778888775332111 111223343332          13333444


Q ss_pred             EcCCCceEEEEceeec-----CCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635           88 IKPNSRHIWIDRCSLR-----DYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  138 (294)
Q Consensus        88 i~~~~~~vwIDHcs~s-----~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~  138 (294)
                      +. .+++|.|++.++.     ...|| ||+ ..+++|+|++|.|...+-+.-+.+.
T Consensus       185 i~-~~~nv~i~~i~I~a~~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaiksg  237 (409)
T PLN03010        185 IK-TCNYVAISKINILAPETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAINSG  237 (409)
T ss_pred             Ee-ccccEEEEEEEEeCCCCCCCCCc-eee-eccceEEEEeeEEecCCCeEEecCC
Confidence            54 6788888888774     35688 777 3688888888888887777777553

>PLN02793 Probable polygalacturonase

Probab=97.99  E-value=0.0022  Score=63.54  Aligned_cols=134  Identities=16%  Similarity=0.209  Sum_probs=88.7

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  134 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l  134 (294)
                      |.+.+++||.|++|+++....   =.+.+. .+++|.|++.++..     ..|| ||+ ..+++|+|++|.|...+-+..
T Consensus       180 i~f~~~~nv~v~gitl~nSp~---~~i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa  253 (443)
T PLN02793        180 ITFHKCKDLRVENLNVIDSQQ---MHIAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS  253 (443)
T ss_pred             EEEEeeccEEEECeEEEcCCC---eEEEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence            566689999999999998643   346676 89999999999953     5799 899 479999999999999888888


Q ss_pred             ecCCCCCCCCcceEEEEEceeecCCCC-------Cccee-ecCeEEEEcceEeCccceeEE-----e--cCCceEEEEce
Q 022635          135 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYNNYTRNWGIYAVC-----A--SVESQIYSQCN  199 (294)
Q Consensus       135 iG~~d~~~~d~~~~vT~hhN~f~~~~~-------R~P~~-r~g~~h~~NN~~~n~~~~~~~-----~--~~~~~v~~e~N  199 (294)
                      +....       .+|++.++.+....+       +.... ..-.+.+.|+.+.+.. +++.     +  +.-..|.+++-
T Consensus       254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni  325 (443)
T PLN02793        254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI  325 (443)
T ss_pred             ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence            86432       167887776633221       11110 1123677777776543 2321     1  11235555665


Q ss_pred             EEEcCCcc
Q 022635          200 IYEAGQKK  207 (294)
Q Consensus       200 ~f~~g~~~  207 (294)
                      .+++...+
T Consensus       326 ~m~nv~~p  333 (443)
T PLN02793        326 FMENVSNP  333 (443)
T ss_pred             EEecCCce
Confidence            55555443

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=97.94  E-value=0.001  Score=60.84  Aligned_cols=128  Identities=15%  Similarity=0.164  Sum_probs=88.7

Q ss_pred             CCCCCc-------hHHHHhhcCCCeEEEEEeceEEEeCc----eeEeccCeEEEee----cc----------ceEEEcCC
Q 022635            5 IDDGPG-------SLREGCRRREPLWIVFEVSGTIHLSS----YLSVSSYKTIDGR----GQ----------RIKLTGKG   59 (294)
Q Consensus         5 ~dsg~G-------sLr~a~~~~~P~~Ivf~v~G~I~l~~----~l~v~sn~TI~G~----g~----------g~~i~g~g   59 (294)
                      +|+++|       +|.+|++...|..+|.--.|++.-..    +|.+.+.+||.|.    |.          ++.|.|.+
T Consensus         4 ~D~~~Gs~~~P~~Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~   83 (246)
T PF07602_consen    4 NDSNDGSQSAPFKTITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGG   83 (246)
T ss_pred             ccCCCCccccCHHHHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccC
Confidence            566666       57789988888888877899998653    5888899999986    22          22344433


Q ss_pred             -------EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCC-CCCeeEe----eeCCccEEEEccEEe
Q 022635           60 -------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY-DDGLIDI----TRQSTDITVSRCYFT  127 (294)
Q Consensus        60 -------l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~-~Dg~id~----~~~s~~vTiS~~~f~  127 (294)
                             +.|..+++..|+.++|+.+....+-||.++ ++ +.-|..|+|..+ .+|.+..    +....+++|+.|.+.
T Consensus        84 ~~~~~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~  161 (246)
T PF07602_consen   84 PDLSGQNVTIILANNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIY  161 (246)
T ss_pred             ccccceeEEEEecCCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEE
Confidence                   455567889999999998754457788886 44 888899999985 5664221    113356777777776


Q ss_pred             ecCeeeE
Q 022635          128 QHDKTML  134 (294)
Q Consensus       128 ~h~~~~l  134 (294)
                      ....+.-
T Consensus       162 ~~~~Gi~  168 (246)
T PF07602_consen  162 FNKTGIS  168 (246)
T ss_pred             ecCcCeE
Confidence            5444433

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=97.91  E-value=0.00025  Score=58.20  Aligned_cols=128  Identities=19%  Similarity=0.224  Sum_probs=78.7

Q ss_pred             CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCe-eeEecC
Q 022635           59 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK-TMLIGA  137 (294)
Q Consensus        59 gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~-~~liG~  137 (294)
                      ++.+...+++.|++-+|+.    ...||.+. ...++.|+.|.|++...+ +.+. .+..++|++|.|.+... ++.+..
T Consensus        25 gi~~~~~~~~~i~n~~i~~----~~~gi~~~-~~~~~~i~~~~~~~~~~~-i~~~-~~~~~~i~~~~i~~~~~~gi~~~~   97 (158)
T PF13229_consen   25 GIHVSGSSNITIENCTISN----GGYGIYVS-GGSNVTISNNTISDNGSG-IYVS-GSSNITIENNRIENNGDYGIYISN   97 (158)
T ss_dssp             CEEE-SSCESEEES-EEES----STTSEEEE-CCES-EEES-EEES-SEE-EECC-S-CS-EEES-EEECSSS-SCE-TC
T ss_pred             EEEEEcCCCeEEECeEEEC----CCcEEEEe-cCCCeEEECeEEEEccce-EEEE-ecCCceecCcEEEcCCCccEEEec
Confidence            5777667777888888887    46788886 668899999999887733 5563 78889999999987655 555543


Q ss_pred             -CCCCCCCcceEEEEEceeecCCCCCcceeec-C--eEEEEcceEeCccceeEEecCCce-EEEEceEE
Q 022635          138 -DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-G--KVHLYNNYTRNWGIYAVCASVESQ-IYSQCNIY  201 (294)
Q Consensus       138 -~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g--~~h~~NN~~~n~~~~~~~~~~~~~-v~~e~N~f  201 (294)
                       .        ..+++.+|.|.++....=.+.. .  .+-+.+|.+.+...+++.....+. +.+.+|.|
T Consensus        98 ~~--------~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~~~v~~n~~  158 (158)
T PF13229_consen   98 SS--------SNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSNCTVTNNTF  158 (158)
T ss_dssp             EE--------CS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS--EEES-E-
T ss_pred             cC--------CCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCeEEEECCCC
Confidence             1        1578888888888754444432 2  567788888887777775554444 77778876

>PLN02480 Probable pectinesterase

Probab=97.88  E-value=0.003  Score=60.58  Aligned_cols=103  Identities=12%  Similarity=0.239  Sum_probs=73.1

Q ss_pred             CCCCc---hHHHHhhcCC----CeEEEEEeceEEEeCceeEe---ccCeEEEeeccc-eEEEcC----------CEEEee
Q 022635            6 DDGPG---SLREGCRRRE----PLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQR-IKLTGK----------GLRLKE   64 (294)
Q Consensus         6 dsg~G---sLr~a~~~~~----P~~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g-~~i~g~----------gl~i~~   64 (294)
                      .+|.|   ||++||++..    .++++|-..|+.+  ++|.|   .+++||.|.|.. ..|.+.          .|.|. 
T Consensus        54 ~~G~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV~-  130 (343)
T PLN02480         54 INGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTVE-  130 (343)
T ss_pred             CCCCCCcccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEEE-
Confidence            34544   8999997732    3556666689999  88888   367999999743 334321          25665 


Q ss_pred             eccEEEEeeEEEcCCC------CCCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635           65 CEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID  111 (294)
Q Consensus        65 ~~NVIirnl~i~~~~~------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id  111 (294)
                      +++++++||+|++..+      ...-|+.+.-.++++.+.+|.|....|=|++
T Consensus       131 a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~  183 (343)
T PLN02480        131 APHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFD  183 (343)
T ss_pred             CCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEe
Confidence            8999999999998632      1234555543689999999999887777653

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.82  E-value=0.0012  Score=59.39  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=29.1

Q ss_pred             EEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635           61 RLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTML  134 (294)
Q Consensus        61 ~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l  134 (294)
                      .+..+.++.|++.+|+..    ..||.+. .++++-|..|.++....| +.+. .+.+.+|++|.|.+...+.+
T Consensus        39 ~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~G-i~l~-~s~~~~I~~N~i~~n~~GI~  105 (236)
T PF05048_consen   39 YVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYG-IYLM-GSSNNTISNNTISNNGYGIY  105 (236)
T ss_pred             EEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCC-EEEE-cCCCcEEECCEecCCCceEE
Confidence            334455555555555542    3444443 344444444444444444 2232 22222455554444433333

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PLN03003 Probable polygalacturonase At3g15720

Probab=97.81  E-value=0.00053  Score=67.95  Aligned_cols=124  Identities=19%  Similarity=0.355  Sum_probs=86.6

Q ss_pred             cCeEEEeeccceEEEcCC-------------EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC----
Q 022635           42 SYKTIDGRGQRIKLTGKG-------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD----  104 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~g-------------l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~----  104 (294)
                      .+++|.|.|   +|.|.|             |.+..++|+.|++|+++...   .=.|.+. .+++|.|++.++..    
T Consensus       113 ~~i~I~G~G---tIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp---~w~i~i~-~c~nV~i~~l~I~ap~~s  185 (456)
T PLN03003        113 EGLVIEGDG---EINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP---MAHIHIS-ECNYVTISSLRINAPESS  185 (456)
T ss_pred             cceEEeccc---eEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCC---cEEEEEe-ccccEEEEEEEEeCCCCC
Confidence            356666643   566543             67778999999999999864   3456776 89999999999864    


Q ss_pred             -CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCC-------Cccee-ecCeEEEEc
Q 022635          105 -YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPRL-RFGKVHLYN  175 (294)
Q Consensus       105 -~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~-------R~P~~-r~g~~h~~N  175 (294)
                       ..|| ||+ ..+++|+|.+|.|...+-+.-+.+...       +|++.++.+....+       +.... ..-.+++.|
T Consensus       186 pNTDG-IDi-~~S~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n  256 (456)
T PLN03003        186 PNTDG-IDV-GASSNVVIQDCIIATGDDCIAINSGTS-------NIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN  256 (456)
T ss_pred             CCCCc-Eee-cCcceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEe
Confidence             5799 899 479999999999999888888875421       57777766543211       11100 012467888


Q ss_pred             ceEeCc
Q 022635          176 NYTRNW  181 (294)
Q Consensus       176 N~~~n~  181 (294)
                      +.+.+.
T Consensus       257 ~~~~~T  262 (456)
T PLN03003        257 CNFRGT  262 (456)
T ss_pred             eEEECC
Confidence            877764

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=97.78  E-value=0.00082  Score=60.36  Aligned_cols=129  Identities=19%  Similarity=0.144  Sum_probs=84.1

Q ss_pred             CCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecC
Q 022635           58 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA  137 (294)
Q Consensus        58 ~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~  137 (294)
                      .|+.+..++++.|++.++..    ..+||.+. .+.++-|..|+++....| +.+ ..+..++|++|.|.+...+.++..
T Consensus        14 ~Gi~l~~~~~~~i~~n~i~~----~~~gi~~~-~s~~~~I~~n~i~~~~~G-I~~-~~s~~~~i~~n~i~~n~~Gi~l~~   86 (236)
T PF05048_consen   14 NGIYLWNSSNNSIENNTISN----SRDGIYVE-NSDNNTISNNTISNNRYG-IHL-MGSSNNTIENNTISNNGYGIYLMG   86 (236)
T ss_pred             CcEEEEeCCCCEEEcCEEEe----CCCEEEEE-EcCCeEEEeeEEECCCeE-EEE-EccCCCEEEeEEEEccCCCEEEEc
Confidence            67888888999999999985    36888776 889999999999999888 455 368889999999998777766655


Q ss_pred             CCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCccceeEEecCCceEEEEceEEEc
Q 022635          138 DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA  203 (294)
Q Consensus       138 ~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~  203 (294)
                      +.        ..++..|.|.++.. --.+.. ....+.+|.+.+. .+++.........+++|.|..
T Consensus        87 s~--------~~~I~~N~i~~n~~-GI~l~~s~~~~I~~N~i~~~-~~GI~l~~s~~n~I~~N~i~~  143 (236)
T PF05048_consen   87 SS--------NNTISNNTISNNGY-GIYLYGSSNNTISNNTISNN-GYGIYLSSSSNNTITGNTISN  143 (236)
T ss_pred             CC--------CcEEECCEecCCCc-eEEEeeCCceEEECcEEeCC-CEEEEEEeCCCCEEECeEEeC
Confidence            43        23566666555544 222221 2234555544422 233333332333344444433

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen

Probab=97.74  E-value=0.0032  Score=60.89  Aligned_cols=174  Identities=16%  Similarity=0.286  Sum_probs=128.9

Q ss_pred             hHHHHhhcCCCeEEEEEeceEEEeCceeEeccCeEEEeeccceEEEcC---CEEEe---------eeccEEEEeeEEEcC
Q 022635           11 SLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGK---GLRLK---------ECEHVIICNLEFEGG   78 (294)
Q Consensus        11 sLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~g~---gl~i~---------~~~NVIirnl~i~~~   78 (294)
                      .|.+|+.+-.  .|-.+-+-++.+.++|.|++...|+|+|+.+.|.+.   +|.+.         +=.+|.+.|++|...
T Consensus        56 Dle~~I~~ha--KVaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~  133 (386)
T PF01696_consen   56 DLEEAIRQHA--KVALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGR  133 (386)
T ss_pred             CHHHHHHhcC--EEEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecC
Confidence            5888888866  344567788888899999999999999998888643   25443         347999999999975


Q ss_pred             CCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecC
Q 022635           79 RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDG  158 (294)
Q Consensus        79 ~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~  158 (294)
                      .  ..-|+-+. ...++.|..|.|....--.++..   ....|.-|.|..-+++.....        +..+++.+|.|+.
T Consensus       134 ~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~--------~~~lsVk~C~Fek  199 (386)
T PF01696_consen  134 D--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG--------KSKLSVKKCVFEK  199 (386)
T ss_pred             C--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC--------cceEEeeheeeeh
Confidence            4  23556565 67999999999998777777663   678899999998888874332        2368889999998


Q ss_pred             CCCCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCC
Q 022635          159 TRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ  205 (294)
Q Consensus       159 ~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~  205 (294)
                      |.-=-  +..|.+++.+|...+..-..+-.+   .-.+.+|.|....
T Consensus       200 C~igi--~s~G~~~i~hn~~~ec~Cf~l~~g---~g~i~~N~v~~~~  241 (386)
T PF01696_consen  200 CVIGI--VSEGPARIRHNCASECGCFVLMKG---TGSIKHNMVCGPN  241 (386)
T ss_pred             eEEEE--EecCCeEEecceecccceEEEEcc---cEEEeccEEeCCC
Confidence            86533  345889999998888654333322   2345788887654

E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=97.63  E-value=0.00092  Score=63.54  Aligned_cols=130  Identities=20%  Similarity=0.338  Sum_probs=88.3

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  134 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l  134 (294)
                      |.+..++|+.|++|+++....+   .+.+. .+++|+|+|.++..     ..|| ||+ ..+++|+|.+|.|...+-+.-
T Consensus        95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia  168 (326)
T PF00295_consen   95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA  168 (326)
T ss_dssp             EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred             eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence            7888899999999999986543   57776 89999999999853     4799 798 478999999999998888877


Q ss_pred             ecCCCCCCCCcceEEEEEceeecCCCCCcceee---cC-------eEEEEcceEeCccceeEEe--c-----CCceEEEE
Q 022635          135 IGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR---FG-------KVHLYNNYTRNWGIYAVCA--S-----VESQIYSQ  197 (294)
Q Consensus       135 iG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r---~g-------~~h~~NN~~~n~~~~~~~~--~-----~~~~v~~e  197 (294)
                      +.+...       +|.+.+++|.+...  =.+.   .+       .+.+.|+.+.+.. +++..  .     .-..|.+|
T Consensus       169 iks~~~-------ni~v~n~~~~~ghG--isiGS~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iKt~~~~~G~v~nI~f~  238 (326)
T PF00295_consen  169 IKSGSG-------NILVENCTCSGGHG--ISIGSEGSGGSQNDIRNVTFENCTIINTD-NGIRIKTWPGGGGYVSNITFE  238 (326)
T ss_dssp             ESSEEC-------EEEEESEEEESSSE--EEEEEESSSSE--EEEEEEEEEEEEESES-EEEEEEEETTTSEEEEEEEEE
T ss_pred             cccccc-------ceEEEeEEEecccc--ceeeeccCCccccEEEeEEEEEEEeeccc-eEEEEEEecccceEEeceEEE
Confidence            765421       78999998876544  1221   11       3456666665543 44422  1     11355566


Q ss_pred             ceEEEcCC
Q 022635          198 CNIYEAGQ  205 (294)
Q Consensus       198 ~N~f~~g~  205 (294)
                      +...++..
T Consensus       239 ni~~~~v~  246 (326)
T PF00295_consen  239 NITMENVK  246 (326)
T ss_dssp             EEEEEEES
T ss_pred             EEEecCCc
Confidence            65555544

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>PLN02155 polygalacturonase

Probab=97.60  E-value=0.0033  Score=61.38  Aligned_cols=109  Identities=14%  Similarity=0.191  Sum_probs=79.5

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeec-----CCCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLR-----DYDDGLIDITRQSTDITVSRCYFTQHDKTML  134 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s-----~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l  134 (294)
                      |.+..++||.|++|+++...   .=.|.+. .+++|.|+|.++.     ...|| ||+ ..+++|+|++|.|...+-+..
T Consensus       148 i~~~~~~nv~i~gitl~nSp---~w~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa  221 (394)
T PLN02155        148 ISFNSAKDVIISGVKSMNSQ---VSHMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA  221 (394)
T ss_pred             eeEEEeeeEEEECeEEEcCC---CeEEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence            56778999999999999754   3456676 8999999999995     35698 788 479999999999999888888


Q ss_pred             ecCCCCCCCCcceEEEEEceeecCC-------CCCcce-eecCeEEEEcceEeCc
Q 022635          135 IGADPSHVGDRCIRVTIHHCLFDGT-------RQRHPR-LRFGKVHLYNNYTRNW  181 (294)
Q Consensus       135 iG~~d~~~~d~~~~vT~hhN~f~~~-------~~R~P~-~r~g~~h~~NN~~~n~  181 (294)
                      ++....       +|++.++.+...       ..+.+. -..-.+.+.|+.+.+.
T Consensus       222 ik~gs~-------nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t  269 (394)
T PLN02155        222 IGPGTR-------NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGS  269 (394)
T ss_pred             cCCCCc-------eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCC
Confidence            876421       677777666432       222231 1123567888887764

>PLN02432 putative pectinesterase

Probab=97.55  E-value=0.0044  Score=58.22  Aligned_cols=113  Identities=14%  Similarity=0.250  Sum_probs=77.6

Q ss_pred             CchHHHHhhcC----CCeEEEEEeceEEEeCceeEe---ccCeEEEeeccceEEE----c------CCEEEeeeccEEEE
Q 022635            9 PGSLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT----G------KGLRLKECEHVIIC   71 (294)
Q Consensus         9 ~GsLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~----g------~gl~i~~~~NVIir   71 (294)
                      --++++||++.    ..+.++|-..|+.+  ++|.|   .+++||.|.+..-++.    +      ..+.+. +++++.+
T Consensus        23 f~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v~-a~~f~a~   99 (293)
T PLN02432         23 FRKIQDAIDAVPSNNSQLVFIWVKPGIYR--EKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSVL-ASDFVGR   99 (293)
T ss_pred             ccCHHHHHhhccccCCceEEEEEeCceeE--EEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEEE-CCCeEEE
Confidence            34788999762    22455555689987  88888   3799999997654443    1      125554 8999999


Q ss_pred             eeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           72 NLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        72 nl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      ||+|++..+...-++.|.-.++++-+.+|.|....|=|++-   ...--+.+|.|.
T Consensus       100 nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~---~gr~yf~~c~I~  152 (293)
T PLN02432        100 FLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDD---TGRHYYRNCYIE  152 (293)
T ss_pred             eeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEEC---CCCEEEEeCEEE
Confidence            99999865433445544435799999999999888887642   234455566665

>PLN02170 probable pectinesterase/pectinesterase inhibitor

Probab=97.53  E-value=0.013  Score=59.20  Aligned_cols=102  Identities=22%  Similarity=0.399  Sum_probs=70.6

Q ss_pred             CCCCc---hHHHHhhcC-----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c-----CC--------E
Q 022635            6 DDGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-----KG--------L   60 (294)
Q Consensus         6 dsg~G---sLr~a~~~~-----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g-----~g--------l   60 (294)
                      .+|.|   ++++||++.     ..|++++-..|+.+  +.+.|.   +|+||+|.|.+-++. +     .+        +
T Consensus       231 ~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv  308 (529)
T PLN02170        231 ADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTYH--ENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATV  308 (529)
T ss_pred             CCCCCchhhHHHHHHhcccccCCceEEEEEeCCeeE--EEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEE
Confidence            45655   788999742     23667776789988  888883   799999998765553 2     11        4


Q ss_pred             EEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           61 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        61 ~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      .+. +++++.|||+|++..+. ..-|+.+.-.++++.+.+|.|....|=+.
T Consensus       309 ~v~-~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy  358 (529)
T PLN02170        309 AAM-GDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLY  358 (529)
T ss_pred             EEE-cCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcce
Confidence            444 89999999999986432 22334343247899999999987655543

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=97.50  E-value=0.0073  Score=59.21  Aligned_cols=134  Identities=13%  Similarity=0.126  Sum_probs=90.9

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTML  134 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l  134 (294)
                      |.+..++||.|++|+|+....   =.+.+. .+++|.|++.++..     ..|| ||+ ..+++|+|.+|.|...+-+.-
T Consensus       158 i~f~~~~nv~i~gitl~nSp~---w~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa  231 (404)
T PLN02188        158 VKFVNMNNTVVRGITSVNSKF---FHIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS  231 (404)
T ss_pred             EEEEeeeeEEEeCeEEEcCCC---eEEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence            466689999999999998643   456776 89999999999864     5799 899 479999999999999888888


Q ss_pred             ecCCCCCCCCcceEEEEEceeecCCCC-------Ccce-eecCeEEEEcceEeCccceeEEe---------cCCceEEEE
Q 022635          135 IGADPSHVGDRCIRVTIHHCLFDGTRQ-------RHPR-LRFGKVHLYNNYTRNWGIYAVCA---------SVESQIYSQ  197 (294)
Q Consensus       135 iG~~d~~~~d~~~~vT~hhN~f~~~~~-------R~P~-~r~g~~h~~NN~~~n~~~~~~~~---------~~~~~v~~e  197 (294)
                      ++....       +|++-++.+....+       +... -....+.+.|+.+.+.. +++..         +.-..|.++
T Consensus       232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~  303 (404)
T PLN02188        232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE  303 (404)
T ss_pred             EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence            864321       57777766643221       1110 01124678888877653 23321         111366677


Q ss_pred             ceEEEcCCcc
Q 022635          198 CNIYEAGQKK  207 (294)
Q Consensus       198 ~N~f~~g~~~  207 (294)
                      +-.+++...+
T Consensus       304 ni~m~~v~~p  313 (404)
T PLN02188        304 NIVMNNVTNP  313 (404)
T ss_pred             eEEecCccce
Confidence            7777766544

>PLN02176 putative pectinesterase

Probab=97.41  E-value=0.009  Score=57.23  Aligned_cols=117  Identities=13%  Similarity=0.225  Sum_probs=77.9

Q ss_pred             CCCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE--cC--------CEEEee
Q 022635            5 IDDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--GK--------GLRLKE   64 (294)
Q Consensus         5 ~dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~--g~--------gl~i~~   64 (294)
                      +.+|.|   |+++||++-    ..+++++-..|+.+  ++|.|.   +++||.|.|.+-++.  +.        .+.+. 
T Consensus        44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v~-  120 (340)
T PLN02176         44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTSY-  120 (340)
T ss_pred             CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEEE-
Confidence            345555   899999762    23555555689999  888884   689999998655543  11        25664 


Q ss_pred             eccEEEEeeEEEcCCC-------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           65 CEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        65 ~~NVIirnl~i~~~~~-------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      +++++.+||+|++..+       ...-|+.+.-.++++-+.+|.|....|=|++-   ...--+.+|.|.
T Consensus       121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~---~gRqyf~~CyIe  187 (340)
T PLN02176        121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDG---KGRHYYKRCVIS  187 (340)
T ss_pred             CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeC---CcCEEEEecEEE
Confidence            8999999999997532       11234434334789999999998877776642   233444455554

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=97.37  E-value=0.0031  Score=62.08  Aligned_cols=94  Identities=18%  Similarity=0.210  Sum_probs=59.3

Q ss_pred             cCeEEEee-----ccceEEEcCCEEEeeeccEEEEeeEEEcCCC-------------------CCCCceEEcCCCceEEE
Q 022635           42 SYKTIDGR-----GQRIKLTGKGLRLKECEHVIICNLEFEGGRG-------------------HDVDGIQIKPNSRHIWI   97 (294)
Q Consensus        42 sn~TI~G~-----g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~-------------------~~~D~i~i~~~~~~vwI   97 (294)
                      +++||.|.     |....-...+|.+..|+++.|++.+|++...                   ....+|.+. .++++.|
T Consensus       115 ~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V  193 (455)
T TIGR03808       115 DGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIV  193 (455)
T ss_pred             CCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEE
Confidence            56655554     3322222345777889999999999997520                   112345554 5668888


Q ss_pred             EceeecCCCCCeeEeee-----------------------------------CCccEEEEccEEeecCeeeEec
Q 022635           98 DRCSLRDYDDGLIDITR-----------------------------------QSTDITVSRCYFTQHDKTMLIG  136 (294)
Q Consensus        98 DHcs~s~~~Dg~id~~~-----------------------------------~s~~vTiS~~~f~~h~~~~liG  136 (294)
                      .+|+++...|+.|.+.+                                   .+.+++|+.|.++++.+..+.+
T Consensus       194 ~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~  267 (455)
T TIGR03808       194 ARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRG  267 (455)
T ss_pred             ECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEE
Confidence            88888887775443321                                   2567888888888777444433

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional

Probab=97.34  E-value=0.026  Score=57.36  Aligned_cols=119  Identities=16%  Similarity=0.366  Sum_probs=80.2

Q ss_pred             CCCc---hHHHHhhcC-C------CeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-------------C
Q 022635            7 DGPG---SLREGCRRR-E------PLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------G   59 (294)
Q Consensus         7 sg~G---sLr~a~~~~-~------P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-------------g   59 (294)
                      +|.|   ++++||.+. .      -|.|++-..|+++  +.|.|.   +|+||+|.|.+-+|. +.             .
T Consensus       230 dGsG~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT  307 (538)
T PLN03043        230 YGTDNFTTITDAIAAAPNNSKPEDGYFVIYAREGYYE--EYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSST  307 (538)
T ss_pred             CCCCCCcCHHHHHHhccccCCCCcceEEEEEcCeeeE--EEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceE
Confidence            4544   888999751 1      1567776789998  888883   799999998655443 21             1


Q ss_pred             EEEeeeccEEEEeeEEEcCCC-CCCCceEEcCCCceEEEEceeecCCCCCe-----------------eEeeeCCccEEE
Q 022635           60 LRLKECEHVIICNLEFEGGRG-HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITV  121 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~-~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~-----------------id~~~~s~~vTi  121 (294)
                      +.+. +++++.|||+|++..+ ...-|+.+.-.+...-+.+|.|....|=|                 +|+.-+.--+-+
T Consensus       308 ~~v~-~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avf  386 (538)
T PLN03043        308 FAVS-GERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIF  386 (538)
T ss_pred             EEEE-CCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeee
Confidence            4454 8999999999998643 12234444335788999999997654443                 333334456678


Q ss_pred             EccEEee
Q 022635          122 SRCYFTQ  128 (294)
Q Consensus       122 S~~~f~~  128 (294)
                      ++|.|.-
T Consensus       387 q~c~i~~  393 (538)
T PLN03043        387 QNCNLYA  393 (538)
T ss_pred             eccEEEE
Confidence            8888864

>PLN02416 probable pectinesterase/pectinesterase inhibitor

Probab=97.31  E-value=0.0044  Score=62.83  Aligned_cols=100  Identities=21%  Similarity=0.463  Sum_probs=72.4

Q ss_pred             CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-EcC-----C--------EE
Q 022635            6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LR   61 (294)
Q Consensus         6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g~-----g--------l~   61 (294)
                      .+|.|   ++++||++    ...|+|++-..|+.+  +.+.|.   +|+||+|.|.+.++ .+.     |        |.
T Consensus       236 ~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~  313 (541)
T PLN02416        236 ADGTGNFSTITDAINFAPNNSNDRIIIYVREGVYE--ENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLA  313 (541)
T ss_pred             CCCCCCccCHHHHHHhhhhcCCceEEEEEeCceeE--EEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEE
Confidence            45666   78889975    335677777789998  788883   79999999865544 321     1        55


Q ss_pred             EeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           62 LKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      +. +++++.|||+|++..+   ...-|+.+  .++++-+-+|.|....|=|+
T Consensus       314 v~-~~~F~a~nitf~Ntag~~~~QAVAl~v--~~D~~~fy~c~~~G~QDTLy  362 (541)
T PLN02416        314 VS-GEGFLARDITIENTAGPEKHQAVALRV--NADLVALYRCTINGYQDTLY  362 (541)
T ss_pred             EE-CCCeEEEeeEEEECCCCCCCceEEEEE--cCccEEEEcceEecccchhc
Confidence            54 8999999999997643   23445555  47899999999987766654

>PLN02665 pectinesterase family protein

Probab=97.30  E-value=0.036  Score=53.64  Aligned_cols=100  Identities=16%  Similarity=0.280  Sum_probs=70.4

Q ss_pred             CCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceE-EEcC------------CEEEe
Q 022635            7 DGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK------------GLRLK   63 (294)
Q Consensus         7 sg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~g~------------gl~i~   63 (294)
                      +|.|   ++++||++-    ..|++++-..|+.+  +++.|.   +++||.|++...+ |...            .+.+.
T Consensus        75 dG~Gdf~TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v~  152 (366)
T PLN02665         75 DGSGDFKTITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIVE  152 (366)
T ss_pred             CCCCCccCHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEEE
Confidence            4555   899999762    23566665679998  888884   7899999965433 3211            14554


Q ss_pred             eeccEEEEeeEEEcCCC--------CCCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635           64 ECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID  111 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~~--------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id  111 (294)
                       +++++.+||+|++..+        ...-|+.+  .++++-+.+|.|....|=|++
T Consensus       153 -a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v--~gDka~f~~C~f~G~QDTL~~  205 (366)
T PLN02665        153 -SDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI--SGDKAAFYNCRFIGFQDTLCD  205 (366)
T ss_pred             -CCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE--cCCcEEEEcceeccccceeEe
Confidence             8999999999998532        12344444  478999999999887777764

>PLN02682 pectinesterase family protein

Probab=97.29  E-value=0.012  Score=56.80  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             hHHHHhhcC----CCeEEEEEeceEEEeCceeEe---ccCeEEEeeccceEEE-c----------C---------CEEEe
Q 022635           11 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G----------K---------GLRLK   63 (294)
Q Consensus        11 sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~-g----------~---------gl~i~   63 (294)
                      ++++||++-    ..+.+++-..|+.+  +++.|   .+++||.|.|..-++. .          +         .+.+.
T Consensus        84 TIQ~AIdavP~~~~~r~vI~Ik~G~Y~--EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v~  161 (369)
T PLN02682         84 TIQAAIDSLPVINLVRVVIKVNAGTYR--EKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAVN  161 (369)
T ss_pred             CHHHHHhhccccCCceEEEEEeCceee--EEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEEE
Confidence            899999762    22455555679988  88888   3799999997644432 1          0         14554


Q ss_pred             eeccEEEEeeEEEcCCC------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           64 ECEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~~------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                       +++++.+||+|++..+      .+.-|+.+.-.++++-+.+|.|....|=|++-   ...--+.+|.|.
T Consensus       162 -a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie  227 (369)
T PLN02682        162 -SPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDH---LGRHYFKDCYIE  227 (369)
T ss_pred             -CCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEEC---CCCEEEEeeEEc
Confidence             8999999999998532      11223434335799999999998888777642   233445555554

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=97.25  E-value=0.028  Score=53.47  Aligned_cols=93  Identities=18%  Similarity=0.246  Sum_probs=69.1

Q ss_pred             ceEEEeCceeEeccCeEEEeeccceEEEcCC----EEEeeeccEEEEeeEEEcCC---CCCCCceEEcCCCceEEEEcee
Q 022635           29 SGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG----LRLKECEHVIICNLEFEGGR---GHDVDGIQIKPNSRHIWIDRCS  101 (294)
Q Consensus        29 ~G~I~l~~~l~v~sn~TI~G~g~g~~i~g~g----l~i~~~~NVIirnl~i~~~~---~~~~D~i~i~~~~~~vwIDHcs  101 (294)
                      +|...  +.+.|..-+|+.|. .++++.|.+    +++. +.++|||.|++|+..   ...+.+|-+...++..-|.||+
T Consensus        40 ~g~~~--g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~  115 (408)
T COG3420          40 SGRYA--GNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHND  115 (408)
T ss_pred             eeeec--ccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEccc
Confidence            35544  56888888899897 566787654    6775 999999999999653   2445677665577888899999


Q ss_pred             ecCCCCCeeEeeeCCccEEEEccEEe
Q 022635          102 LRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus       102 ~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      +..+.-|. -+ .++..+-|--|.+.
T Consensus       116 l~~n~~Gi-~l-~~s~d~~i~~n~i~  139 (408)
T COG3420         116 LIGNSFGI-YL-HGSADVRIEGNTIQ  139 (408)
T ss_pred             ccccceEE-EE-eccCceEEEeeEEe
Confidence            98888884 44 46777777777775

>PLN02217 probable pectinesterase/pectinesterase inhibitor

Probab=97.25  E-value=0.038  Score=57.32  Aligned_cols=148  Identities=20%  Similarity=0.386  Sum_probs=94.6

Q ss_pred             CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-----C--------EE
Q 022635            6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------LR   61 (294)
Q Consensus         6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-----g--------l~   61 (294)
                      .+|.|   ++++||++    ...|.|++-..|+++  +.+.|.   .++|++|.|.+-++. +.     |        |.
T Consensus       256 ~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~  333 (670)
T PLN02217        256 QDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIYK--EYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVA  333 (670)
T ss_pred             CCCCCCccCHHHHHHhccccCCceEEEEEeCCceE--EEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEE
Confidence            45665   88999976    223666666689988  888885   589999998655553 21     1        44


Q ss_pred             EeeeccEEEEeeEEEcCCC-CCCCceEEcCCCceEEEEceeecCCCC-----------------CeeEeeeCCccEEEEc
Q 022635           62 LKECEHVIICNLEFEGGRG-HDVDGIQIKPNSRHIWIDRCSLRDYDD-----------------GLIDITRQSTDITVSR  123 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~-~~~D~i~i~~~~~~vwIDHcs~s~~~D-----------------g~id~~~~s~~vTiS~  123 (294)
                      +. +++++.|||+|++..+ ...-++-+.-.+++.-+.+|.|....|                 |.+|+.-+.-..-+++
T Consensus       334 v~-g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~  412 (670)
T PLN02217        334 IV-GDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQN  412 (670)
T ss_pred             EE-CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEEc
Confidence            44 8999999999998643 222344443357899999999975443                 3344444555677888


Q ss_pred             cEEeecC-----eeeEe--cCCCCCCCCcceEEEEEceeecCC
Q 022635          124 CYFTQHD-----KTMLI--GADPSHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus       124 ~~f~~h~-----~~~li--G~~d~~~~d~~~~vT~hhN~f~~~  159 (294)
                      |.|.-..     ++.+-  |..+.   +...-+.||+|.+...
T Consensus       413 C~I~~r~~~~~~~~~ITAqgr~~~---~~~tGfvf~~C~i~~~  452 (670)
T PLN02217        413 CTLLVRKPLLNQACPITAHGRKDP---RESTGFVLQGCTIVGE  452 (670)
T ss_pred             cEEEEccCCCCCceeEecCCCCCC---CCCceEEEEeeEEecC
Confidence            8886431     12111  21111   1123689999988664

>PLN02995 Probable pectinesterase/pectinesterase inhibitor

Probab=97.23  E-value=0.026  Score=57.32  Aligned_cols=102  Identities=20%  Similarity=0.405  Sum_probs=71.7

Q ss_pred             CCCCc---hHHHHhhcC------CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-----C--------
Q 022635            6 DDGPG---SLREGCRRR------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------   59 (294)
Q Consensus         6 dsg~G---sLr~a~~~~------~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-----g--------   59 (294)
                      .+|.|   +.++||++.      ..|++++-..|+.+  +.+.|.   +|+|+.|.|.+-++. +.     +        
T Consensus       229 ~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT  306 (539)
T PLN02995        229 KDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQ--ENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSAT  306 (539)
T ss_pred             CCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEeE--EEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEE
Confidence            45666   899999762      12566665689998  778884   699999998655543 21     1        


Q ss_pred             EEEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           60 LRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      +.+. +++++.|||+|++..+. ..-|+.+.-.+++..+.+|.|....|=|.
T Consensus       307 ~~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy  357 (539)
T PLN02995        307 AGIE-GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLM  357 (539)
T ss_pred             EEEE-CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhc
Confidence            3444 89999999999986432 23444443357999999999987766654

>PLN02773 pectinesterase

Probab=97.21  E-value=0.019  Score=54.57  Aligned_cols=112  Identities=14%  Similarity=0.199  Sum_probs=73.5

Q ss_pred             chHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEEc------------------C------
Q 022635           10 GSLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLTG------------------K------   58 (294)
Q Consensus        10 GsLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~g------------------~------   58 (294)
                      -|+++||++.    ..++++|-..|+..  +.|.|.   +++||.|++..-++.-                  .      
T Consensus        18 ~TIq~Aida~P~~~~~~~~I~Ik~G~Y~--E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~Sa   95 (317)
T PLN02773         18 CTVQDAIDAVPLCNRCRTVIRVAPGVYR--QPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCG   95 (317)
T ss_pred             cCHHHHHhhchhcCCceEEEEEeCceEE--EEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCce
Confidence            4789999762    22555555689988  888883   5899999975433321                  0      


Q ss_pred             CEEEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           59 GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        59 gl~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      .+.+ .+++++.+||+|++..+. ..-|+.|.-.++++-+.+|.|....|=|+.-   ...--+.+|.|.
T Consensus        96 Tv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~---~gr~yf~~c~Ie  161 (317)
T PLN02773         96 TVIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH---YGKQYLRDCYIE  161 (317)
T ss_pred             EEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeC---CCCEEEEeeEEe
Confidence            1344 489999999999986431 2233444335789999999998877776542   223444555554

>PLN02488 probable pectinesterase/pectinesterase inhibitor

Probab=97.20  E-value=0.022  Score=57.07  Aligned_cols=101  Identities=19%  Similarity=0.385  Sum_probs=70.5

Q ss_pred             CCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-----C--------EEE
Q 022635            7 DGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------LRL   62 (294)
Q Consensus         7 sg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-----g--------l~i   62 (294)
                      +|.|   ++++||.+.    ..|.+++-..|+.+  +.+.|.   +|+||+|.|.+-+|. +.     +        +.+
T Consensus       204 dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v  281 (509)
T PLN02488        204 DGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVYD--EIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS  281 (509)
T ss_pred             CCCCCccCHHHHHHhchhcCCCcEEEEEeCCeeE--EEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE
Confidence            4555   788999762    23566666789998  888884   699999998765553 21     1        344


Q ss_pred             eeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           63 KECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        63 ~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                       .+++++.|||+|++..+. ..-|+.+.-.++..-+-+|.|....|=|.
T Consensus       282 -~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy  329 (509)
T PLN02488        282 -NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALY  329 (509)
T ss_pred             -EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCccee
Confidence             389999999999986432 23445454357999999999987655543

>PLN02304 probable pectinesterase

Probab=97.18  E-value=0.024  Score=54.97  Aligned_cols=115  Identities=15%  Similarity=0.180  Sum_probs=78.7

Q ss_pred             CCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEe---ccCeEEEeeccceEEE-c-------------CCEEE
Q 022635            7 DGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSV---SSYKTIDGRGQRIKLT-G-------------KGLRL   62 (294)
Q Consensus         7 sg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v---~sn~TI~G~g~g~~i~-g-------------~gl~i   62 (294)
                      +|.|   ++++||++-    ..+++|+-..|+.+  ++|.|   .+++||.|+|..-++. .             ..+.+
T Consensus        82 dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY~--EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v  159 (379)
T PLN02304         82 NGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIYY--EKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV  159 (379)
T ss_pred             CCCCCccCHHHHHhhCcccCCCcEEEEEeCeEeE--EEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE
Confidence            4554   899999762    23566666789988  88888   3799999997654442 1             11444


Q ss_pred             eeeccEEEEeeEEEcCCC------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           63 KECEHVIICNLEFEGGRG------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        63 ~~~~NVIirnl~i~~~~~------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      . +++++.|||+|++...      ...-|+.+.-.+.++-+.+|.|....|=|++-   ...--+.+|.|.
T Consensus       160 ~-a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~---~gR~Yf~~CyIe  226 (379)
T PLN02304        160 F-ASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDD---RGRHYFKDCYIQ  226 (379)
T ss_pred             E-CCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeC---CCCEEEEeeEEc
Confidence            4 8999999999997531      11224444335789999999999998887753   233445666665

>smart00656 Amb_all Amb_all domain

Probab=97.14  E-value=0.021  Score=50.31  Aligned_cols=131  Identities=17%  Similarity=0.155  Sum_probs=81.4

Q ss_pred             cCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCC-----CCCCCc-eEEcCCCceEEEEceeecCCCCCeeEeeeC
Q 022635           42 SYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR-----GHDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQ  115 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~-----~~~~D~-i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~  115 (294)
                      .|++|.+........+.+|.+..++||+|.|.+|..+.     ....|+ +.+..++.+|-|-.|.|....-+.|--..+
T Consensus        45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d  124 (190)
T smart00656       45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD  124 (190)
T ss_pred             eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence            36666664332112345688888999999999999752     111344 445436788888888887654444322211


Q ss_pred             C------ccEEEEccEEeecC-eeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCc
Q 022635          116 S------TDITVSRCYFTQHD-KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW  181 (294)
Q Consensus       116 s------~~vTiS~~~f~~h~-~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~  181 (294)
                      .      -.||+.+|+|.+.. +.-++..         -.+=+.+|+|.+.....-..+. +.+.+.||||.+.
T Consensus       125 ~~~~~~~~~vT~h~N~~~~~~~R~P~~r~---------g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~  189 (190)
T smart00656      125 SDTDDGKMRVTIAHNYFGNLRQRAPRVRF---------GYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP  189 (190)
T ss_pred             CccccccceEEEECcEEcCcccCCCcccC---------CEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence            1      26999999998532 1111111         1567778999887654333332 5789999999863

>PLN02497 probable pectinesterase

Probab=97.12  E-value=0.023  Score=54.23  Aligned_cols=117  Identities=12%  Similarity=0.224  Sum_probs=77.8

Q ss_pred             CCCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-Ec---------CCEEEee
Q 022635            5 IDDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TG---------KGLRLKE   64 (294)
Q Consensus         5 ~dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g---------~gl~i~~   64 (294)
                      +.+|.|   |+++||++    ...+++++-..|+.+  +++.|.   +++||.|+|..-++ ..         ..|.+. 
T Consensus        37 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~G~Y~--EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v~-  113 (331)
T PLN02497         37 DQSGHGNFTTIQSAIDSVPSNNKHWFCINVKAGLYR--EKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFSTL-  113 (331)
T ss_pred             CCCCCCCccCHHHHHhhccccCCceEEEEEeCcEEE--EEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEEe-
Confidence            345655   89999976    223555555689998  888883   79999999754333 21         125554 


Q ss_pred             eccEEEEeeEEEcCCCC--------CCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           65 CEHVIICNLEFEGGRGH--------DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        65 ~~NVIirnl~i~~~~~~--------~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      +++++.+||+|++..+.        ..-++.+.-.++++-+.+|.|....|=|++-   ...--+.+|.|.
T Consensus       114 a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~---~gRqyf~~C~Ie  181 (331)
T PLN02497        114 ADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDS---DGRHYFKRCTIQ  181 (331)
T ss_pred             cCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeC---CCcEEEEeCEEE
Confidence            89999999999976421        1124444335789999999999888887642   233445555554

>PLN02713 Probable pectinesterase/pectinesterase inhibitor

Probab=97.12  E-value=0.048  Score=55.70  Aligned_cols=121  Identities=16%  Similarity=0.405  Sum_probs=79.8

Q ss_pred             CCCCCc---hHHHHhhcC-C------CeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC------------
Q 022635            5 IDDGPG---SLREGCRRR-E------PLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK------------   58 (294)
Q Consensus         5 ~dsg~G---sLr~a~~~~-~------P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~------------   58 (294)
                      +.+|.|   +.++||++. .      .++|++-..|+++  +.+.|.   +++||+|.|.+-++. +.            
T Consensus       255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S  332 (566)
T PLN02713        255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYE--EYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS  332 (566)
T ss_pred             CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEE--EEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence            345655   788999762 1      2456665689998  888883   689999998654443 21            


Q ss_pred             -CEEEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee-----------------EeeeCCccE
Q 022635           59 -GLRLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI-----------------DITRQSTDI  119 (294)
Q Consensus        59 -gl~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i-----------------d~~~~s~~v  119 (294)
                       .|.+. +++++.|||+|++..+. ..-|+.+.-.++..-+.+|.|....|=|.                 |+.-+.-.+
T Consensus       333 aT~~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a  411 (566)
T PLN02713        333 ATFAVV-GQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV  411 (566)
T ss_pred             eeEEEE-CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence             14554 89999999999986432 22344443357899999999986655543                 333344456


Q ss_pred             EEEccEEee
Q 022635          120 TVSRCYFTQ  128 (294)
Q Consensus       120 TiS~~~f~~  128 (294)
                      -+++|.|..
T Consensus       412 vfq~C~i~~  420 (566)
T PLN02713        412 VFQNCNLYP  420 (566)
T ss_pred             EEeccEEEE
Confidence            677777753

>PLN02990 Probable pectinesterase/pectinesterase inhibitor

Probab=97.06  E-value=0.034  Score=56.87  Aligned_cols=102  Identities=19%  Similarity=0.374  Sum_probs=70.0

Q ss_pred             CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c------C--C------E
Q 022635            6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G------K--G------L   60 (294)
Q Consensus         6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g------~--g------l   60 (294)
                      .+|.|   ++++||++.    ..|.+++-..|+++  +.+.|.   +|+||.|.|.+-++. +      +  +      +
T Consensus       265 ~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~  342 (572)
T PLN02990        265 QDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYN--EKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATV  342 (572)
T ss_pred             CCCCCCCcCHHHHHhhCcccCCceEEEEEeCceeE--EEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEE
Confidence            45666   899999762    23566666789998  788884   689999998654443 1      1  1      3


Q ss_pred             EEeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           61 RLKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        61 ~i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      .+. +++++.|||+|++..+. ..-|+.+.-.+++.-+.+|.|....|=|.
T Consensus       343 ~v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy  392 (572)
T PLN02990        343 AIN-GDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLY  392 (572)
T ss_pred             EEE-cCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhc
Confidence            443 89999999999986431 23344443357899999999976555443

>PLN02301 pectinesterase/pectinesterase inhibitor

Probab=97.04  E-value=0.0097  Score=60.43  Aligned_cols=102  Identities=18%  Similarity=0.405  Sum_probs=71.2

Q ss_pred             CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-------C------EE
Q 022635            6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------G------LR   61 (294)
Q Consensus         6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-------g------l~   61 (294)
                      .+|.|   ++++||.+    ...|.|+|-..|+.+  +.+.|.   +|+||.|.|.+.++. +.       +      +.
T Consensus       242 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~  319 (548)
T PLN02301        242 KDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTYK--ENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVA  319 (548)
T ss_pred             CCCCCCcccHHHHHHhhhhcCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEE
Confidence            35666   88899976    223667776799998  788884   699999998655553 21       1      33


Q ss_pred             EeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           62 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      + .+++++.|||+|++..+. ..-++.+.-.+++.-+.+|.|....|=|.
T Consensus       320 v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy  368 (548)
T PLN02301        320 A-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLY  368 (548)
T ss_pred             E-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccce
Confidence            4 489999999999986432 12334333247899999999987666554

>PLN02708 Probable pectinesterase/pectinesterase inhibitor

Probab=97.01  E-value=0.01  Score=60.44  Aligned_cols=100  Identities=17%  Similarity=0.309  Sum_probs=70.3

Q ss_pred             CCCc---hHHHHhhcC-----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c------CC--------E
Q 022635            7 DGPG---SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G------KG--------L   60 (294)
Q Consensus         7 sg~G---sLr~a~~~~-----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g------~g--------l   60 (294)
                      +|.|   ++++||++.     ..|.||+-..|+.+  +.+.|.   .|+||+|.|.+-++. +      .|        |
T Consensus       248 dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~  325 (553)
T PLN02708        248 DGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATV  325 (553)
T ss_pred             CCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEE
Confidence            4544   889999662     23667776789998  778773   699999998655553 1      11        4


Q ss_pred             EEeeeccEEEEeeEEEcCCCCC-CCceEEcCCCceEEEEceeecCCCCCe
Q 022635           61 RLKECEHVIICNLEFEGGRGHD-VDGIQIKPNSRHIWIDRCSLRDYDDGL  109 (294)
Q Consensus        61 ~i~~~~NVIirnl~i~~~~~~~-~D~i~i~~~~~~vwIDHcs~s~~~Dg~  109 (294)
                      .+. +++++.|||+|++..+.+ .-|+.+.-.++++.+.+|.|....|=+
T Consensus       326 ~v~-~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTL  374 (553)
T PLN02708        326 GVL-GDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTL  374 (553)
T ss_pred             EEE-cCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccc
Confidence            444 899999999999865422 244444435899999999997655544

>PLN02201 probable pectinesterase/pectinesterase inhibitor

Probab=97.00  E-value=0.014  Score=58.90  Aligned_cols=103  Identities=17%  Similarity=0.345  Sum_probs=71.0

Q ss_pred             CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c-------C------CEE
Q 022635            6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------K------GLR   61 (294)
Q Consensus         6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g-------~------gl~   61 (294)
                      -+|.|   ++++||.+.    ..+++++-..|+++  +.+.|.   +|+||+|.|.+-++. +       .      .+.
T Consensus       212 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~  289 (520)
T PLN02201        212 ADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVYL--ENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFA  289 (520)
T ss_pred             CCCCCCccCHHHHHHhchhcCCCcEEEEEeCceeE--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEE
Confidence            35555   889999762    23566666789998  888884   689999998654443 1       1      144


Q ss_pred             EeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635           62 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLID  111 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id  111 (294)
                      +. +++++.|||+|++..+. ..-|+.+.-.+++.-+.+|.|....|=+.+
T Consensus       290 v~-~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~  339 (520)
T PLN02201        290 VS-GRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYT  339 (520)
T ss_pred             EE-CCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEe
Confidence            44 89999999999986431 223444433478999999999877776553

>PLN02197 pectinesterase

Probab=96.95  E-value=0.02  Score=58.68  Aligned_cols=101  Identities=21%  Similarity=0.354  Sum_probs=72.0

Q ss_pred             CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c-------CC--------
Q 022635            6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------KG--------   59 (294)
Q Consensus         6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g-------~g--------   59 (294)
                      .+|.|   ++++||++    ...|.|++-..|+++  +.+.|.   +|+||.|.|.+-++. +       .|        
T Consensus       281 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT  358 (588)
T PLN02197        281 KDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIYN--EQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGT  358 (588)
T ss_pred             CCCCCCcCCHHHHHHhccccCCceEEEEEeCceEE--EEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeE
Confidence            35655   88999976    223666666789998  888884   689999998654443 1       11        


Q ss_pred             EEEeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCeeE
Q 022635           60 LRLKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLID  111 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id  111 (294)
                      |.+ .+++++.|||+|++..+   ...-|+.+  .+++.-+.+|.|....|=|++
T Consensus       359 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv--~~D~~~fy~C~f~GyQDTLy~  410 (588)
T PLN02197        359 VQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRV--NGDRAVIFNCRFDGYQDTLYV  410 (588)
T ss_pred             EEE-ECCcEEEEEeEEEeCCCCCCCceEEEEe--cCCcEEEEEeEEEecCcceEe
Confidence            344 38999999999998643   23344444  579999999999887777653

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=96.95  E-value=0.013  Score=59.34  Aligned_cols=101  Identities=23%  Similarity=0.529  Sum_probs=72.3

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEee-----------eCCccEEEEccEEee
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT-----------RQSTDITVSRCYFTQ  128 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~-----------~~s~~vTiS~~~f~~  128 (294)
                      +....|+|+.++||+|........|||.++ +|+||.|+.|.|+-+.|- +-++           ..+.+|+|++|+|..
T Consensus       264 ~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~-I~iksg~~~~~~~~~~~~~~i~i~~c~~~~  341 (542)
T COG5434         264 VHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDC-IAIKSGAGLDGKKGYGPSRNIVIRNCYFSS  341 (542)
T ss_pred             EeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCce-EEeecccCCcccccccccccEEEecceecc
Confidence            455579999999999997655578999997 999999999999985554 3332           235789999999995


Q ss_pred             cCeeeEecCCCCCCCCcceEEEEEceeecCCCCCccee
Q 022635          129 HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL  166 (294)
Q Consensus       129 h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~  166 (294)
                      -.-+..+|+.-..   +...|++-.|.|.+ ..|-=|+
T Consensus       342 ghG~~v~Gse~~g---gv~ni~ved~~~~~-~d~GLRi  375 (542)
T COG5434         342 GHGGLVLGSEMGG---GVQNITVEDCVMDN-TDRGLRI  375 (542)
T ss_pred             cccceEeeeecCC---ceeEEEEEeeeecc-Ccceeee
Confidence            4444555554211   12467888888777 4555555

>PLN02314 pectinesterase

Probab=96.92  E-value=0.013  Score=60.15  Aligned_cols=102  Identities=19%  Similarity=0.365  Sum_probs=71.0

Q ss_pred             CCCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-EcC-----C--------EE
Q 022635            6 DDGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LR   61 (294)
Q Consensus         6 dsg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g~-----g--------l~   61 (294)
                      .+|.|   ++++||.+    ...|+|++-..|+++  +.+.|.   +|+|+.|.|.+-+| .+.     |        |.
T Consensus       284 ~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~  361 (586)
T PLN02314        284 KDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFA  361 (586)
T ss_pred             CCCCCCccCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEE
Confidence            35554   88999976    223667776789998  778884   68999999865444 221     1        44


Q ss_pred             EeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           62 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      + .+++++.|||+|++..+. ..-|+.+.-.+...-+.+|.|....|=|.
T Consensus       362 v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy  410 (586)
T PLN02314        362 A-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLY  410 (586)
T ss_pred             E-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhe
Confidence            4 489999999999986432 22344444357899999999987666543

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3

Probab=96.90  E-value=0.027  Score=53.08  Aligned_cols=120  Identities=16%  Similarity=0.350  Sum_probs=72.9

Q ss_pred             chHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceE-EEcC-------------CEEEeeeccE
Q 022635           10 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIK-LTGK-------------GLRLKECEHV   68 (294)
Q Consensus        10 GsLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~-i~g~-------------gl~i~~~~NV   68 (294)
                      -++++||++    ...+++||-..|+.+  ++|.|.   +++||+|.|..-+ |.+.             .|.+. ++++
T Consensus        13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v~-a~~f   89 (298)
T PF01095_consen   13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSVN-ADDF   89 (298)
T ss_dssp             SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred             cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEecccccccccccccccccc-ccce
Confidence            478999976    223566666799999  888885   5999999976444 4331             15665 8999


Q ss_pred             EEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCC
Q 022635           69 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGAD  138 (294)
Q Consensus        69 Iirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~  138 (294)
                      +++||+|++..+   ...-||.+  .++++.+.+|.|....|=|+.-   ....-+.+|.|.. .--+++|..
T Consensus        90 ~~~nit~~Nt~g~~~~qAvAl~~--~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~IeG-~vDFIfG~~  156 (298)
T PF01095_consen   90 TAENITFENTAGPSGGQAVALRV--SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIEG-NVDFIFGNG  156 (298)
T ss_dssp             EEEEEEEEEHCSGSG----SEEE--T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEEE-SEEEEEESS
T ss_pred             eeeeeEEecCCCCcccceeeeee--cCCcEEEEEeEEccccceeeec---cceeEEEeeEEEe-cCcEEECCe
Confidence            999999997532   23456666  4688999999999888976542   3455667777763 223556643

1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....

>PLN02933 Probable pectinesterase/pectinesterase inhibitor

Probab=96.89  E-value=0.019  Score=57.98  Aligned_cols=102  Identities=20%  Similarity=0.354  Sum_probs=70.6

Q ss_pred             CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-------------CEE
Q 022635            6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------GLR   61 (294)
Q Consensus         6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-------------gl~   61 (294)
                      -+|.|   ++++||++.    ..|++++-..|+..  +.+.|.   +++||.|.|.+-++. +.             .+.
T Consensus       224 ~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~  301 (530)
T PLN02933        224 IDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVG  301 (530)
T ss_pred             CCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEE
Confidence            34555   888999762    23566666689999  888884   689999997654443 11             144


Q ss_pred             EeeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           62 LKECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      +. +++++.|||+|++..+. ..-|+.+.-.++++-+.+|.|....|=|+
T Consensus       302 v~-a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy  350 (530)
T PLN02933        302 VK-GKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLY  350 (530)
T ss_pred             EE-CCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccc
Confidence            44 89999999999986432 22344443357899999999987666654

>PLN02634 probable pectinesterase

Probab=96.85  E-value=0.071  Score=51.47  Aligned_cols=114  Identities=17%  Similarity=0.281  Sum_probs=76.2

Q ss_pred             CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE------------c------
Q 022635            6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT------------G------   57 (294)
Q Consensus         6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~------------g------   57 (294)
                      .+|.|   |+++||++-    ..+.+++-..|+.+  ++|.|.   +++||.|.|...++.            |      
T Consensus        62 ~dGsGdf~TIQaAIda~P~~~~~r~vI~Ik~GvY~--EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~  139 (359)
T PLN02634         62 ANGHGDFRSVQDAVDSVPKNNTMSVTIKINAGFYR--EKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTY  139 (359)
T ss_pred             CCCCCCccCHHHHHhhCcccCCccEEEEEeCceEE--EEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccc
Confidence            35555   889999762    22455555689988  888883   789999998665553            1      


Q ss_pred             --CCEEEeeeccEEEEeeEEEcCCC--------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           58 --KGLRLKECEHVIICNLEFEGGRG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        58 --~gl~i~~~~NVIirnl~i~~~~~--------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                        ..+.+. +++++.+||+|++..+        ...-|+.+  .++++-+.+|.|....|=|++-   ...--+.+|.|.
T Consensus       140 ~SaTv~V~-a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v--~gDra~f~~C~f~G~QDTL~~~---~gR~yf~~CyIe  213 (359)
T PLN02634        140 QTASVTVY-ANYFTARNISFKNTAPAPMPGMQGWQAVAFRI--SGDKAFFFGCGFYGAQDTLCDD---AGRHYFKECYIE  213 (359)
T ss_pred             cceEEEEE-CCCeEEEeCeEEeCCccCCCCCCCCceEEEEe--cCCcEEEEEeEEecccceeeeC---CCCEEEEeeEEc
Confidence              014444 8999999999997532        12334444  4788999999999887777642   233444455554

>PLN02745 Putative pectinesterase/pectinesterase inhibitor

Probab=96.82  E-value=0.049  Score=55.97  Aligned_cols=99  Identities=21%  Similarity=0.412  Sum_probs=70.6

Q ss_pred             CCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-----C--------EEE
Q 022635            7 DGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-----G--------LRL   62 (294)
Q Consensus         7 sg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-----g--------l~i   62 (294)
                      +|.|   ++++||.+.    ..|++++-..|+++  +.+.|.   +|+||.|.|.+-++. +.     +        |.+
T Consensus       292 dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v  369 (596)
T PLN02745        292 DGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA  369 (596)
T ss_pred             CCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE
Confidence            4555   889999762    23566665689998  778884   689999998654443 21     1        444


Q ss_pred             eeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           63 KECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        63 ~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                       .+++++.|||+|++..+   ...-|+.+  .+++..+.+|.|....|=|.
T Consensus       370 -~~~~F~a~nitf~Ntag~~~~QAVAl~v--~~Dr~~f~~c~~~G~QDTLy  417 (596)
T PLN02745        370 -LGEGFMAKSMGFRNTAGPEKHQAVAIRV--QSDRSIFLNCRFEGYQDTLY  417 (596)
T ss_pred             -EcCCEEEEeeEEEECCCCCCCceEEEEE--cCCcEEEEeeEEeecccccc
Confidence             48999999999998643   23344444  57999999999987776654

>PLN02313 Pectinesterase/pectinesterase inhibitor

Probab=96.81  E-value=0.02  Score=58.67  Aligned_cols=118  Identities=16%  Similarity=0.339  Sum_probs=78.9

Q ss_pred             CCCCc---hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-cC-------------CEE
Q 022635            6 DDGPG---SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-GK-------------GLR   61 (294)
Q Consensus         6 dsg~G---sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g~-------------gl~   61 (294)
                      .+|.|   ++++||.+.    ..|.|++-..|+++  +.+.|.   +|++|+|.|.+-+|. +.             .+.
T Consensus       281 ~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~--E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~  358 (587)
T PLN02313        281 ADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYR--ENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA  358 (587)
T ss_pred             CCCCCCCccHHHHHHhccccCCceEEEEEeCceeE--EEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE
Confidence            35555   788899762    23666666789988  788884   689999998655543 21             133


Q ss_pred             EeeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCe-----------------eEeeeCCccEEE
Q 022635           62 LKECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-----------------IDITRQSTDITV  121 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~-----------------id~~~~s~~vTi  121 (294)
                      + .+++++.|||+|++..+   ...-|+.+  .+++.-+-+|.|....|=|                 +|+.-+.-.+-+
T Consensus       359 v-~~~~F~a~~itf~Ntag~~~~QAvAlrv--~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avf  435 (587)
T PLN02313        359 A-VGERFLARDITFQNTAGPSKHQAVALRV--GSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVL  435 (587)
T ss_pred             E-ECCCeEEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEE
Confidence            4 37999999999998643   22344444  5789999999997654443                 333334445566


Q ss_pred             EccEEee
Q 022635          122 SRCYFTQ  128 (294)
Q Consensus       122 S~~~f~~  128 (294)
                      ++|.|.-
T Consensus       436 q~c~i~~  442 (587)
T PLN02313        436 QDCDINA  442 (587)
T ss_pred             EccEEEE
Confidence            7776653

>PLN02506 putative pectinesterase/pectinesterase inhibitor

Probab=96.81  E-value=0.018  Score=58.34  Aligned_cols=96  Identities=20%  Similarity=0.410  Sum_probs=69.0

Q ss_pred             chHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-EcC-----C--------EEEeeeccE
Q 022635           10 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-----G--------LRLKECEHV   68 (294)
Q Consensus        10 GsLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g~-----g--------l~i~~~~NV   68 (294)
                      -++++||.+    +..|.|||-..|+.+  +.+.|.   +++||+|.|.+-++ .+.     |        +.+ .++++
T Consensus       245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY~--E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F  321 (537)
T PLN02506        245 RTITEAINEAPNHSNRRYIIYVKKGVYK--ENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF  321 (537)
T ss_pred             cCHHHHHHhchhcCCCcEEEEEeCCeee--EEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence            478889976    234677777789998  778884   79999999765444 321     1        344 48999


Q ss_pred             EEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           69 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        69 Iirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      +.|||+|++..+   ...-|+.+  .++++-+.+|.|....|=++
T Consensus       322 ~a~nit~~Ntag~~~~QAVAl~v--~~D~~~fy~C~~~G~QDTLy  364 (537)
T PLN02506        322 IARDITFRNTAGPQNHQAVALRV--DSDQSAFYRCSMEGYQDTLY  364 (537)
T ss_pred             EEEeeEEEeCCCCCCCceEEEEe--cCCcEEEEcceeecccccce
Confidence            999999998643   23444544  57999999999987766654

>PLN02468 putative pectinesterase/pectinesterase inhibitor

Probab=96.80  E-value=0.019  Score=58.54  Aligned_cols=101  Identities=17%  Similarity=0.326  Sum_probs=69.7

Q ss_pred             CCCc---hHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE--------cC------CEEE
Q 022635            7 DGPG---SLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT--------GK------GLRL   62 (294)
Q Consensus         7 sg~G---sLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~--------g~------gl~i   62 (294)
                      +|.|   +.++||.+    ...|.|++-..|+++  +.+.|.   +|+||+|.|.+-+|.        |.      .+.+
T Consensus       265 dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v  342 (565)
T PLN02468        265 DGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV  342 (565)
T ss_pred             CCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE
Confidence            5655   78889966    223666666789998  788884   689999998654443        11      1444


Q ss_pred             eeeccEEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           63 KECEHVIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        63 ~~~~NVIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      . +++++.|||+|++..+. ..-|+.+.-.+.+.-+.+|.|....|=|.
T Consensus       343 ~-~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy  390 (565)
T PLN02468        343 F-GKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLY  390 (565)
T ss_pred             E-CCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhc
Confidence            4 79999999999976432 22344443357899999999987666543

>PLN02916 pectinesterase family protein

Probab=96.79  E-value=0.056  Score=54.32  Aligned_cols=96  Identities=16%  Similarity=0.303  Sum_probs=68.5

Q ss_pred             chHHHHhhcC-------CCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEEE-c-------C------CEEEeee
Q 022635           10 GSLREGCRRR-------EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKLT-G-------K------GLRLKEC   65 (294)
Q Consensus        10 GsLr~a~~~~-------~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i~-g-------~------gl~i~~~   65 (294)
                      -++++||.+.       ..|++++-..|+.+  +.+.|.   +++||.|.|.+-++. +       .      .+.+. +
T Consensus       200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v~-~  276 (502)
T PLN02916        200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGVS-G  276 (502)
T ss_pred             cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEEE-C
Confidence            3789999652       23667766789998  888884   689999998654443 2       1      14444 8


Q ss_pred             ccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           66 EHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        66 ~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      ++++.|||+|++..+   ...-|+.+  .+++.-+.+|.|....|=|+
T Consensus       277 ~~F~A~nitf~Ntag~~~~QAVALrv--~~D~a~fy~C~f~G~QDTLy  322 (502)
T PLN02916        277 DGFWARDITFENTAGPHKHQAVALRV--SSDLSVFYRCSFKGYQDTLF  322 (502)
T ss_pred             CCEEEEeeEEEeCCCCCCCceEEEEE--cCCcEEEEeeeEeccCceeE
Confidence            999999999998643   23344545  47899999999987766654

>PLN02484 probable pectinesterase/pectinesterase inhibitor

Probab=96.64  E-value=0.029  Score=57.46  Aligned_cols=98  Identities=18%  Similarity=0.336  Sum_probs=67.8

Q ss_pred             chHHHHhhcC----CCeEEEEEeceEEEeCc-eeEec---cCeEEEeeccceEEE-cC-------------CEEEeeecc
Q 022635           10 GSLREGCRRR----EPLWIVFEVSGTIHLSS-YLSVS---SYKTIDGRGQRIKLT-GK-------------GLRLKECEH   67 (294)
Q Consensus        10 GsLr~a~~~~----~P~~Ivf~v~G~I~l~~-~l~v~---sn~TI~G~g~g~~i~-g~-------------gl~i~~~~N   67 (294)
                      -++++||++-    ..|+||+-..|++.  + .+.|.   +|+||+|.|.+-+|. +.             .|.+ .+++
T Consensus       285 ~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~v-~~~~  361 (587)
T PLN02484        285 KTISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFAA-TGAG  361 (587)
T ss_pred             ccHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEEE-EcCC
Confidence            3788899762    23666666789998  6 48784   689999998655543 21             1344 3899


Q ss_pred             EEEEeeEEEcCCCC-CCCceEEcCCCceEEEEceeecCCCCCee
Q 022635           68 VIICNLEFEGGRGH-DVDGIQIKPNSRHIWIDRCSLRDYDDGLI  110 (294)
Q Consensus        68 VIirnl~i~~~~~~-~~D~i~i~~~~~~vwIDHcs~s~~~Dg~i  110 (294)
                      ++.|||+|++..+. ..-|+.+.-.+++.-+-+|.|....|=|+
T Consensus       362 F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy  405 (587)
T PLN02484        362 FIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLY  405 (587)
T ss_pred             EEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccc
Confidence            99999999986431 22344443357899999999987666554

>PRK10531 acyl-CoA thioesterase; Provisional

Probab=96.60  E-value=0.11  Score=51.21  Aligned_cols=98  Identities=14%  Similarity=0.242  Sum_probs=68.2

Q ss_pred             hHHHHhhcC-----CCeEEEEEeceEEEeCceeEec---cCeEEEeecc---ceEEEcC---------------------
Q 022635           11 SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ---RIKLTGK---------------------   58 (294)
Q Consensus        11 sLr~a~~~~-----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~---g~~i~g~---------------------   58 (294)
                      ++++||++.     ..+++++-..|+.+  +.|.|.   +++||.|.|.   +..|...                     
T Consensus        96 TIQaAIdAa~~~~~~~r~~I~Ik~GvY~--EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~~~~~~~~~~~~~~g~~~  173 (422)
T PRK10531         96 TVQAAVDAAIAKRTNKRQYIAVMPGTYQ--GTVYVPAAAPPITLYGTGEKPIDVKIGLALDGEMSPADWRANVNPRGKYM  173 (422)
T ss_pred             CHHHHHhhccccCCCceEEEEEeCceeE--EEEEeCCCCceEEEEecCCCCCceEEEecCcccccccccccccccccccc
Confidence            899999852     23566665679998  888883   7999999763   3444321                     


Q ss_pred             --------------------C------EEEeeeccEEEEeeEEEcCCCC-----CCCceEEcCCCceEEEEceeecCCCC
Q 022635           59 --------------------G------LRLKECEHVIICNLEFEGGRGH-----DVDGIQIKPNSRHIWIDRCSLRDYDD  107 (294)
Q Consensus        59 --------------------g------l~i~~~~NVIirnl~i~~~~~~-----~~D~i~i~~~~~~vwIDHcs~s~~~D  107 (294)
                                          +      +.+ .+++++.+||+|++..+.     ..-++-|.-.++++.+.+|.|....|
T Consensus       174 ~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD  252 (422)
T PRK10531        174 PGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD  252 (422)
T ss_pred             ccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc
Confidence                                1      333 479999999999986431     12233333357899999999998888


Q ss_pred             CeeE
Q 022635          108 GLID  111 (294)
Q Consensus       108 g~id  111 (294)
                      =|+.
T Consensus       253 TLy~  256 (422)
T PRK10531        253 TFFV  256 (422)
T ss_pred             eeee
Confidence            8775

>PLN02671 pectinesterase

Probab=96.58  E-value=0.14  Score=49.46  Aligned_cols=109  Identities=12%  Similarity=0.219  Sum_probs=74.0

Q ss_pred             hHHHHhhcC----CCeEEEEEeceEEEeCceeEec---cCeEEEeecc---ceEEEcC-------------------CEE
Q 022635           11 SLREGCRRR----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ---RIKLTGK-------------------GLR   61 (294)
Q Consensus        11 sLr~a~~~~----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~---g~~i~g~-------------------gl~   61 (294)
                      |+++||++-    ..+++++-..|+.+  ++|.|.   +++||.|.|.   ...|...                   .+.
T Consensus        73 TIQ~AIdavP~~~~~~~~I~Ik~GvY~--EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~  150 (359)
T PLN02671         73 TVQGAVDMVPDYNSQRVKIYILPGIYR--EKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVT  150 (359)
T ss_pred             CHHHHHHhchhcCCccEEEEEeCceEE--EEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEE
Confidence            889999762    22455555689988  888883   7899999863   3344410                   134


Q ss_pred             EeeeccEEEEeeEEEcCCC-------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           62 LKECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~-------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      + .+++++.+||+|++...       ...-|+.+  .++++-+.+|.|....|=|++-   ...--+.+|.|.
T Consensus       151 v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv--~gDra~f~~c~f~G~QDTLy~~---~gR~yf~~CyIe  217 (359)
T PLN02671        151 I-ESDYFCATGITFENTVVAEPGGQGMQAVALRI--SGDKAFFYKVRVLGAQDTLLDE---TGSHYFYQCYIQ  217 (359)
T ss_pred             E-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEE--cCccEEEEcceEeccccccEeC---CCcEEEEecEEE
Confidence            4 37999999999998621       12344555  4789999999999888887643   233455566655

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=96.31  E-value=0.022  Score=49.78  Aligned_cols=102  Identities=25%  Similarity=0.416  Sum_probs=57.8

Q ss_pred             CeEEEeeccceEEE--cCCEEEeeeccEEEEeeEEEcCCCCCCCceE-------------------EcCCCceEEEEcee
Q 022635           43 YKTIDGRGQRIKLT--GKGLRLKECEHVIICNLEFEGGRGHDVDGIQ-------------------IKPNSRHIWIDRCS  101 (294)
Q Consensus        43 n~TI~G~g~g~~i~--g~gl~i~~~~NVIirnl~i~~~~~~~~D~i~-------------------i~~~~~~vwIDHcs  101 (294)
                      +++|.|.+.  ...  ..++.+..+.++.|+|++++...   .+++.                   ++.+..++++..|.
T Consensus        98 nl~i~~~~~--~~~~~~~~i~~~~~~~~~i~nv~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (225)
T PF12708_consen   98 NLTIDGNGI--DPNNNNNGIRFNSSQNVSISNVRIENSG---GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCI  172 (225)
T ss_dssp             EEEEEETCG--CE-SCEEEEEETTEEEEEEEEEEEES-S---S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEE
T ss_pred             eeEEEcccc--cCCCCceEEEEEeCCeEEEEeEEEEccC---ccEEEEEccccCcEeecccceeeeeccceeEEEECCcc
Confidence            456665522  121  24577777899999999999742   22332                   22112233445555


Q ss_pred             ecCCCCCeeEeeeCCccEEEEccEEee-cCeeeEecCCCCCCCCcceEEEEEceeecCCC
Q 022635          102 LRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR  160 (294)
Q Consensus       102 ~s~~~Dg~id~~~~s~~vTiS~~~f~~-h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~  160 (294)
                      +..+.+| +.  .+.++++++||.|.. ...+..+-...        .+.+.+|.|.+|.
T Consensus       173 ~~~~~~g-~~--~~~~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~  221 (225)
T PF12708_consen  173 FNGGDNG-II--LGNNNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCD  221 (225)
T ss_dssp             EESSSCS-EE--CEEEEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSS
T ss_pred             ccCCCce-eE--eecceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCc
Confidence            5556666 32  234788888888876 45555443322        4677777777765

...

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=96.07  E-value=0.079  Score=46.95  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=76.5

Q ss_pred             CeEEEee---------ccceEEEcCCEEEeeeccEEEEeeEEEcCCC-----CCCCceEEcCCCceEEEEceeecCCCCC
Q 022635           43 YKTIDGR---------GQRIKLTGKGLRLKECEHVIICNLEFEGGRG-----HDVDGIQIKPNSRHIWIDRCSLRDYDDG  108 (294)
Q Consensus        43 n~TI~G~---------g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~-----~~~D~i~i~~~~~~vwIDHcs~s~~~Dg  108 (294)
                      |++|-+.         +.+..-.+..|.+.+++||+|.|..|..+..     ..+..+.+..++++|-|-+|-|......
T Consensus        52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~  131 (200)
T PF00544_consen   52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT  131 (200)
T ss_dssp             S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred             CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence            6777773         2222223456999999999999999998621     1233456654688999999999753222


Q ss_pred             eeE------eeeCCccEEEEccEEeecCee-eEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceE
Q 022635          109 LID------ITRQSTDITVSRCYFTQHDKT-MLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYT  178 (294)
Q Consensus       109 ~id------~~~~s~~vTiS~~~f~~h~~~-~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~  178 (294)
                      .+-      .......||+-+|+|.+...- =++...         .+-+.+|+|.+.....=.++. +++-+.||||
T Consensus       132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r~G---------~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F  200 (200)
T PF00544_consen  132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVRFG---------YVHVYNNYYYNWSGYAIGARSGAQVLVENNYF  200 (200)
T ss_dssp             CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEECSC---------EEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred             cccCCCCCccccCCceEEEEeEEECchhhCCCccccc---------EEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence            211      111226999999999753321 122211         688889999877777666664 4678999986

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=95.91  E-value=0.18  Score=47.42  Aligned_cols=147  Identities=17%  Similarity=0.137  Sum_probs=90.1

Q ss_pred             CCceEEcCCCceEEEEceeecCCC-----CCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCC--CCcceEEEEEcee
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRDYD-----DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV--GDRCIRVTIHHCL  155 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~~~-----Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~--~d~~~~vT~hhN~  155 (294)
                      +-++.|. .+.||+|...+|....     +..|.+..++.+|=|-+|.|..+....---+.|...  ......||+..|+
T Consensus       116 g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~  194 (345)
T COG3866         116 GGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNK  194 (345)
T ss_pred             eceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeee
Confidence            5678886 6899999999998654     233788778999999999999755531111111111  1112479999999


Q ss_pred             ecCCC---------CCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccceeeeehhcccccccCCcc
Q 022635          156 FDGTR---------QRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSG  226 (294)
Q Consensus       156 f~~~~---------~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G  226 (294)
                      |++..         .-++.=..-++.+-+|||.|.-.++-..|- +.+.+-||||+.-+...+-.-+         ....
T Consensus       195 fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRf-G~vHvyNNYy~~~~~~g~a~~i---------G~~A  264 (345)
T COG3866         195 FHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRF-GMVHVYNNYYEGNPKFGVAITI---------GTSA  264 (345)
T ss_pred             eecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEe-eEEEEeccccccCcccceEEee---------ccce
Confidence            97643         223331112467889999987554333332 4667779999954432211000         0122


Q ss_pred             eEEEeCCeEeeCce
Q 022635          227 LIRSEGDIFLKGAQ  240 (294)
Q Consensus       227 ~~~~~gn~~~~g~~  240 (294)
                      -++.+.|+|.++..
T Consensus       265 kiyvE~NyF~~~~~  278 (345)
T COG3866         265 KIYVENNYFENGSE  278 (345)
T ss_pred             EEEEecceeccCCC
Confidence            47788888888643

>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina

Probab=95.03  E-value=0.2  Score=43.96  Aligned_cols=65  Identities=26%  Similarity=0.239  Sum_probs=42.5

Q ss_pred             ccEEEEccEEeecCeee--EecCCCCCCCCcceEEEEEceeecCCCCCccee--ecC-------eEEEEcceEeCcc
Q 022635          117 TDITVSRCYFTQHDKTM--LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL--RFG-------KVHLYNNYTRNWG  182 (294)
Q Consensus       117 ~~vTiS~~~f~~h~~~~--liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~--r~g-------~~h~~NN~~~n~~  182 (294)
                      ++|.|=+|.+.+..-..  |+|...+...+....|-+|||.|-.+.. +|..  ..|       ..-+.||+++..-
T Consensus         2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGt-n~~~~wvGGIv~sGF~ntlIENNVfDG~y   77 (198)
T PF08480_consen    2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGT-NPNIDWVGGIVTSGFYNTLIENNVFDGVY   77 (198)
T ss_pred             CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCc-CCCCceeeeEEeccccccEEEeeeecccc
Confidence            57888999998865543  5576544444444589999999977643 4443  322       2468888887653

Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=94.83  E-value=0.12  Score=50.98  Aligned_cols=103  Identities=16%  Similarity=0.241  Sum_probs=50.0

Q ss_pred             ceEEEEceeecCC--CCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCC--cceeec
Q 022635           93 RHIWIDRCSLRDY--DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR--HPRLRF  168 (294)
Q Consensus        93 ~~vwIDHcs~s~~--~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R--~P~~r~  168 (294)
                      .+..|.||-|..|  .-|.|++|  |..-||.+|.|.+..-+.-+=|..        .-++..|+|-++..+  .+-+|.
T Consensus       199 s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN~FiGng~~~~tGGIRI  268 (425)
T PF14592_consen  199 SNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGNVFIGNGVKEGTGGIRI  268 (425)
T ss_dssp             ---EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-EEEE-SSSS-B--EEE
T ss_pred             cceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEeccEEecCCCcCCCCceEE
Confidence            4556666666543  44556664  566677777777655554443332        358888888766643  466663


Q ss_pred             -CeE-EEEcceEeCccceeE----E---ec---------CCceEEEEceEEEcCC
Q 022635          169 -GKV-HLYNNYTRNWGIYAV----C---AS---------VESQIYSQCNIYEAGQ  205 (294)
Q Consensus       169 -g~~-h~~NN~~~n~~~~~~----~---~~---------~~~~v~~e~N~f~~g~  205 (294)
                       |.- .|+|||+++...+.+    .   +.         .--.+++++|-|.+..
T Consensus       269 i~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~  323 (425)
T PF14592_consen  269 IGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCK  323 (425)
T ss_dssp             -SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-S
T ss_pred             ecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccC
Confidence             544 488888887533211    1   10         0125677888888765

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=94.05  E-value=0.26  Score=50.10  Aligned_cols=133  Identities=20%  Similarity=0.295  Sum_probs=87.8

Q ss_pred             CCCeEEEEEeceEEEeCc------e---eEe--ccCeEEEeeccceEEE--c----CCEEEeeeccEEEEeeEEEcCCCC
Q 022635           19 REPLWIVFEVSGTIHLSS------Y---LSV--SSYKTIDGRGQRIKLT--G----KGLRLKECEHVIICNLEFEGGRGH   81 (294)
Q Consensus        19 ~~P~~Ivf~v~G~I~l~~------~---l~v--~sn~TI~G~g~g~~i~--g----~gl~i~~~~NVIirnl~i~~~~~~   81 (294)
                      ..|+.+.|.--....+..      +   +.+  .+++||.+.    +|.  +    .||.+..|+||.|.+.||..+   
T Consensus       236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl----~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg---  308 (542)
T COG5434         236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL----TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG---  308 (542)
T ss_pred             cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce----EEECCCCCCCCccccccceeEEEeccEEecC---
Confidence            467888876555555432      1   111  145565554    332  2    378999999999999999974   


Q ss_pred             CCCceEEc-----------CCCceEEEEceeecCCCCCeeEe---eeCCccEEEEccEEeecCeeeEecCCCCCCCCcce
Q 022635           82 DVDGIQIK-----------PNSRHIWIDRCSLRDYDDGLIDI---TRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCI  147 (294)
Q Consensus        82 ~~D~i~i~-----------~~~~~vwIDHcs~s~~~Dg~id~---~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~  147 (294)
                       +|+|.+.           .-+++|||-||-|..+.-+++.-   ..+..+|++.+|.|.+.+.+.-|....... .+..
T Consensus       309 -DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~  386 (542)
T COG5434         309 -DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVR  386 (542)
T ss_pred             -CceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEE
Confidence             4555553           13578999999999887776542   245689999999999977776666543221 1224


Q ss_pred             EEEEEceeecCCC
Q 022635          148 RVTIHHCLFDGTR  160 (294)
Q Consensus       148 ~vT~hhN~f~~~~  160 (294)
                      +|+|+.+...+..
T Consensus       387 nI~~~~~~~~nv~  399 (542)
T COG5434         387 NIVFEDNKMRNVK  399 (542)
T ss_pred             EEEEecccccCcc
Confidence            6777776666554

>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]

Probab=91.88  E-value=3.4  Score=39.49  Aligned_cols=146  Identities=12%  Similarity=0.172  Sum_probs=93.3

Q ss_pred             chHHHHhhc-----CCCeEEEEEeceEEEeCceeEec-cC--eEEEeeccc--eEEE-----c---C--CEE--------
Q 022635           10 GSLREGCRR-----REPLWIVFEVSGTIHLSSYLSVS-SY--KTIDGRGQR--IKLT-----G---K--GLR--------   61 (294)
Q Consensus        10 GsLr~a~~~-----~~P~~Ivf~v~G~I~l~~~l~v~-sn--~TI~G~g~g--~~i~-----g---~--gl~--------   61 (294)
                      -|.++||++     ...|.+++-..|+.+  +.|.|. ++  +|+.|.+..  -+..     +   .  +..        
T Consensus        95 ~TIQaAvdaA~~~~~~kr~yI~vk~GvY~--e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss~  172 (405)
T COG4677          95 TTIQAAVDAAIIKRTNKRQYIAVKAGVYQ--ETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSSR  172 (405)
T ss_pred             HHHHHHHhhhcccCCCceEEEEEccceec--eeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccch
Confidence            478888876     224777777789988  778885 44  999999654  1221     1   1  110        


Q ss_pred             ------------EeeeccEEEEeeEEEcCCC--C---CCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCc-------
Q 022635           62 ------------LKECEHVIICNLEFEGGRG--H---DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQST-------  117 (294)
Q Consensus        62 ------------i~~~~NVIirnl~i~~~~~--~---~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~-------  117 (294)
                                  +...++.++|||+|+...+  .   ..-++.+...++.+++..|.+....|-++.-..+..       
T Consensus       173 ~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~  252 (405)
T COG4677         173 SATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNR  252 (405)
T ss_pred             hhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCc
Confidence                        1135789999999997432  1   123555655689999999999988888775433222       


Q ss_pred             --cEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee
Q 022635          118 --DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       118 --~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                        .--+.||.|.. +--+++|+.         .+-||.|-|.-...|.|--.
T Consensus       253 ~~R~yftNsyI~G-dvDfIfGsg---------taVFd~c~i~~~d~r~~~~g  294 (405)
T COG4677         253 QPRTYFTNSYIEG-DVDFIFGSG---------TAVFDNCEIQVVDSRTQQEG  294 (405)
T ss_pred             chhhheecceecc-cceEEeccc---------eEEeccceEEEeccCCCcce
Confidence              12234555552 234666765         46777787777778875533

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=86.59  E-value=5.8  Score=38.18  Aligned_cols=71  Identities=17%  Similarity=0.134  Sum_probs=58.3

Q ss_pred             CEEEeeeccEEEEeeEEEcCCC----CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCee
Q 022635           59 GLRLKECEHVIICNLEFEGGRG----HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT  132 (294)
Q Consensus        59 gl~i~~~~NVIirnl~i~~~~~----~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~  132 (294)
                      |+.+.++.++.|+.-+|.+-..    .-+.||.+. ++..+-|-.++++...|+.. + .-|+.-+++.|.|++..++
T Consensus       122 Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy-~-~~S~~~~~~gnr~~~~Ryg  196 (408)
T COG3420         122 GIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY-S-DTSQHNVFKGNRFRDLRYG  196 (408)
T ss_pred             EEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE-E-cccccceecccchhheeee
Confidence            5677789999999999987542    458999998 99999999999999999964 3 3578889999999875544

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=85.06  E-value=6.4  Score=36.53  Aligned_cols=64  Identities=22%  Similarity=0.389  Sum_probs=48.8

Q ss_pred             eeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCC
Q 022635           64 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP  139 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d  139 (294)
                      +++|..|.|.+|..|..    +  +- .++||-+++|.|.|-+-=     .=++++.|.+|.|.+-.++.+|-+.+
T Consensus        17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP~-----Wh~~~~~i~~~~f~~~aRa~iWYs~~   80 (277)
T PF12541_consen   17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYPL-----WHSDNIKIENCYFTEMARAAIWYSNN   80 (277)
T ss_pred             ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECce-----EEECCeEEEeeEEeecceeeeeEeCC
Confidence            47899999999996532    2  32 689999999999875531     12678889999999888888887653

Proteins in this family are typically between 281 and 297 amino acids in length.

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=84.15  E-value=8  Score=35.91  Aligned_cols=98  Identities=21%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             EEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCC--CCCe---------eEe---eeCCccEEEEccEE
Q 022635           61 RLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY--DDGL---------IDI---TRQSTDITVSRCYF  126 (294)
Q Consensus        61 ~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~--~Dg~---------id~---~~~s~~vTiS~~~f  126 (294)
                      ++..+++|-++|+.+.      +|-+.|  .+.||-|||..+..-  .|+.         |..   -..++||||-.+.+
T Consensus       113 t~W~c~~i~l~nv~~~------gdYf~m--~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i  184 (277)
T PF12541_consen  113 TLWNCRGIKLKNVQAN------GDYFFM--NSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVI  184 (277)
T ss_pred             cCEEeCCeEEEeEEEe------ceEeee--eccceEEeceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceE
Confidence            3345566666666663      355555  367788887776421  1221         000   01245555555555


Q ss_pred             eecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeC
Q 022635          127 TQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN  180 (294)
Q Consensus       127 ~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n  180 (294)
                      .    +-.+|...       .++|+-+|...+.   .|..-.-.+.+.|.-+.+
T Consensus       185 ~----GEYLgW~S-------kNltliNC~I~g~---QpLCY~~~L~l~nC~~~~  224 (277)
T PF12541_consen  185 N----GEYLGWNS-------KNLTLINCTIEGT---QPLCYCDNLVLENCTMID  224 (277)
T ss_pred             e----eeEEEEEc-------CCeEEEEeEEecc---CccEeecceEEeCcEeec
Confidence            4    22222221       1577777776654   355544455666665553

Proteins in this family are typically between 281 and 297 amino acids in length.

>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies)

Probab=81.48  E-value=3.3  Score=27.08  Aligned_cols=41  Identities=22%  Similarity=0.269  Sum_probs=26.8

Q ss_pred             ceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee
Q 022635           85 GIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  128 (294)
Q Consensus        85 ~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~  128 (294)
                      ||.+. .+++..|..|.++...|| |.+. .+.+-+|..|.|.+
T Consensus         1 GI~l~-~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~~   41 (44)
T TIGR03804         1 GIYLE-SSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTASS   41 (44)
T ss_pred             CEEEE-ecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEEc
Confidence            45665 566666777777777776 4453 46667777776653

This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
1pxz_A	346	1.7 Angstrom Crystal Structure Of Jun A 1, The Majo		5e-32
3zsc_A	340	Catalytic Function And Substrate Recognition Of The		1e-24
1vbl_A	416	Structure Of The Thermostable Pectate Lyase Pl 47 L		3e-24
3vmv_A	326	Crystal Structure Of Pectate Lyase Bsp165pela From		2e-18
1bn8_A	420	Bacillus Subtilis Pectate Lyase Length = 420		8e-18
2bsp_A	420	Bacillus Subtilis Pectate Lyase R279k Mutant Length		2e-17
3krg_A	399	Structural Insights Into Substrate Specificity And		3e-17
2nzm_A	399	Hexasaccharide I Bound To Bacillus Subtilis Pectate		5e-17
1pcl_A	355	Unusual Structural Features In The Parallel Beta-He		1e-16
1jrg_A	361	Crystal Structure Of The R3 Form Of Pectate Lyase A		5e-13
1ooc_A	361	Mutations In The T1.5 Loop Of Pectate Lyase A Lengt		6e-13
2qxz_A	330	Pectate Lyase R236f From Xanthomonas Campestris Len		4e-10
2qy1_A	330	Pectate Lyase A31g/r236f From Xanthomonas Campestri		4e-10
2qx3_A	330	Structure Of Pectate Lyase Ii From Xanthomonas Camp		7e-09
1plu_A	353	Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu		1e-05
2ewe_A	353	Crystal Structure Of Pectate Lyase C R218k Mutant I		2e-05

>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346

Iteration: 1
 Score =  134 bits (338), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 132/278 (47%), Gaps = 24/278 (8%)
Query: 5   IDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRL 62
           ++  PG+LR G  R + LWI+F  +  I L   L V+ +KTIDGRG  + L   G  L +
Sbjct: 51  VNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFM 110
Query: 63  KECEHVIICNLEFEGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLR 103
           ++  HVI+ +L   G                       D D I ++ N  + WID  SL 
Sbjct: 111 RKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLS 169
Query: 104 DYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFD-GTRQR 162
           D  DGLID+T  ST IT+S  +F  H K ML+G D ++  D+ ++VT+    F     QR
Sbjct: 170 DCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQR 229
Query: 163 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLE 222
            PR R+G VH+ NN    W IYA+  S    I S+ N + A  +    E       +   
Sbjct: 230 MPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPS 289
Query: 223 AKSGLI-RSEGDIFLKGAQAQLLTGVGEECVFHPSEYY 259
           A +  + RS  D F+ GA         E  +++ +E +
Sbjct: 290 ACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAF 327

>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 27/201 (13%)
Query: 25  VFEVSGTIHLSSY--LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEG----- 77
           V  V GTI       + V S KTI G     K+ G GL +K+ ++VII N+ FEG     
Sbjct: 49  VIVVDGTIVFEPKREIKVLSDKTIVGINDA-KIVGGGLVIKDAQNVIIRNIHFEGFYMED 107
Query: 78  ---GRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTML 134
              G+ +D D I ++ NS HIWID  +  + +DG +DI + S  ITVS   F  HDK  L
Sbjct: 108 DPRGKKYDFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSL 166
Query: 135 IGA----DPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY----------TRN 180
           +G+    DP   G +  +VT HH  F    QR PR+RFG  H++NN+             
Sbjct: 167 VGSSDKEDPEQAG-QAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNV 225
Query: 181 WGIYAVCASVESQIYSQCNIY 201
           + IY V +++ ++++ + N +
Sbjct: 226 FPIYGVASAMGAKVHVEGNYF 246

>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 96/202 (47%), Gaps = 41/202 (20%)
Query: 40  VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGHDV 83
           V S  +I G G+  K+ G G  +K  ++VII N+EFE                G    + 
Sbjct: 130 VGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEY 189
Query: 84  DGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITVSRCYF 126
           D I I+  S HIWID  +  D D                 DG +DI   S  IT+S   F
Sbjct: 190 DSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVF 248
Query: 127 TQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI-- 183
           T HDK  LIGA  S + D   +RVT+HH  +    QR PR+RFG+VH+YNNY     +  
Sbjct: 249 TNHDKVTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLAD 308
Query: 184 ----YAVCASVESQIYSQCNIY 201
               YA    V SQIY+Q N +
Sbjct: 309 YDFQYAWGVGVFSQIYAQNNYF 330

>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 19/180 (10%)
Query: 45  TIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSL-- 102
           +I G G   +  G G+RL    ++II N+     R  +   I++  +S+++WID      
Sbjct: 82  SIIGVGTNGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYS 141
Query: 103 -------RDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCI---RVTIH 152
                   DY DGL+D+ R +  ITVS   F  H KTML+G    H  +  +   ++T H
Sbjct: 142 EFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVG----HTDNASLAPDKITYH 197
Query: 153 HCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE---AGQKKRT 209
           H  F+    R P +R+  VH++NNY ++    A+ + V ++++ + N ++   +GQ   T
Sbjct: 198 HNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADPT 257

>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420

Iteration: 1
 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 53/209 (25%)
Query: 38  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 81
           + + +  TI G G   K+ G   ++K  ++VII N+EF+                G    
Sbjct: 144 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 202
Query: 82  DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 124
             D I I   + HIWID C+  D                 + DG  D +  +  IT+S  
Sbjct: 203 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 261
Query: 125 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 177
           Y+  HDK+ + G+  S   D   +++T+HH  +    QR PR+RFG+VH+YNNY      
Sbjct: 262 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTS 321
Query: 178 ------TRNWGIYAVCASVESQIYSQCNI 200
                 +  WGI        S+IY+Q N+
Sbjct: 322 SSSYPFSYAWGI-----GKSSKIYAQNNV 345

>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 53/209 (25%)
Query: 38  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 81
           + + +  TI G G   K+ G   ++K  ++VII N+EF+                G    
Sbjct: 144 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 202
Query: 82  DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 124
             D I I   + HIWID C+  D                 + DG  D +  +  IT+S  
Sbjct: 203 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 261
Query: 125 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 177
           Y+  HDK+ + G+  S   D   +++T+HH  +    Q+ PR+RFG+VH+YNNY      
Sbjct: 262 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQKAPRVRFGQVHVYNNYYEGSTS 321
Query: 178 ------TRNWGIYAVCASVESQIYSQCNI 200
                 +  WGI        S+IY+Q N+
Sbjct: 322 SSSYPFSYAWGI-----GKSSKIYAQNNV 345

>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 53/209 (25%)
Query: 38  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 81
           + + +  TI G G   K+ G   ++K  ++VII N+EF+                G    
Sbjct: 123 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTAGSSGNWAS 181
Query: 82  DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 124
             D I I   + HIWID C+  D                 + DG  D +  +  IT+S  
Sbjct: 182 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240
Query: 125 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 177
           Y+  HD + + G+  S   D   +++T+HH  +    QR PR+RFG+VH+YNNY      
Sbjct: 241 YYHDHDASSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTS 300
Query: 178 ------TRNWGIYAVCASVESQIYSQCNI 200
                 +  WGI        S+IY+Q N+
Sbjct: 301 SSSYPFSYAWGI-----GKSSKIYAQNNV 324

>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 53/209 (25%)
Query: 38  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFE----------------GGRGH 81
           + + +  TI G G   K+ G   ++K  ++VII N+EF+                G    
Sbjct: 123 VDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNS 181
Query: 82  DVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRC 124
             D I I   + HIWID C+  D                 + DG  D +  +  IT+S  
Sbjct: 182 QYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYN 240
Query: 125 YFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY------ 177
           Y+  HDK+ + G+  S   D   +++T+HH  +    Q  PR+RFG+VH+YNNY      
Sbjct: 241 YYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTS 300
Query: 178 ------TRNWGIYAVCASVESQIYSQCNI 200
                 +  WGI        S+IY+Q N+
Sbjct: 301 SSSYPFSYAWGI-----GKSSKIYAQNNV 324

>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 30/171 (17%)
Query: 36  SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNL----------EFEGGRGHDVD- 84
           S +S+ S  TI G G   K T   L +K  ++VI+ NL           +E G G + + 
Sbjct: 74  SQISIPSNTTIIGVGSNGKFTNGSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEW 133
Query: 85  GIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQSTDITVSRCYFT 127
              +  NS ++W+D  ++ D                   DG +DI + S  +T+S   F 
Sbjct: 134 DAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFE 193
Query: 128 QHDKTMLIGADPSHVGDRC--IRVTIHHCLFDGTRQRHPRLRFGKVHLYNN 176
            HDKT+LIG   S+       +RVT H+ +FD   +R PR+RFG +H YNN
Sbjct: 194 LHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNN 244

>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 48/200 (24%)
Query: 25  VFEVSGTIHLS--------------SYLSVSSYKTIDGRGQRIKLTGKGLRLKECE---H 67
           + ++ GTI +S              S +++ +  T+ G G   K     L +   +   +
Sbjct: 56  IIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNN 115
Query: 68  VIICNL----------EFEGGRGHDV--DGIQIKPNSRHIWIDRCSLRDYD--------- 106
           VII N+           +E G G +   D + I   + H+WID  ++ D +         
Sbjct: 116 VIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTK 175
Query: 107 --------DGLIDITRQSTDITVSRCYFTQHDKTMLIG-ADPSHVGDRC-IRVTIHHCLF 156
                   DG +DI R S  +T+S     QHDKTMLIG  D +   D+  + VT+ + +F
Sbjct: 176 DGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHNDTNSAQDKGKLHVTLFNNVF 235
Query: 157 DGTRQRHPRLRFGKVHLYNN 176
           +   +R PR+R+G +H +NN
Sbjct: 236 NRVTERAPRVRYGSIHSFNN 255

>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 48/200 (24%)
Query: 25  VFEVSGTIHLS--------------SYLSVSSYKTIDGRGQRIKLTGKGLRLKECE---H 67
           + ++ GTI +S              S +++ +  T+ G G   K     L +   +   +
Sbjct: 56  IIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNN 115
Query: 68  VIICNL----------EFEGGRGHDV--DGIQIKPNSRHIWIDRCSLRDYD--------- 106
           VII N+           +E G G +   D + I   + H+WID  ++ D +         
Sbjct: 116 VIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTK 175
Query: 107 --------DGLIDITRQSTDITVSRCYFTQHDKTMLIG-ADPSHVGDRC-IRVTIHHCLF 156
                   DG +DI R S  +T+S     QHDKTMLIG +D +   D+  + VT+ + +F
Sbjct: 176 DGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVF 235
Query: 157 DGTRQRHPRLRFGKVHLYNN 176
           +   +R PR+R+G +H +NN
Sbjct: 236 NRVTERAPRVRYGSIHSFNN 255

>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 49  RGQRIKLTGKGLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID-- 98
           +G        G+R+    H VII N+     +GG   D D I ++ NS      IW+D  
Sbjct: 77  KGANGSAANFGIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHN 134
Query: 99  -------RCS-LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRV 149
                  +CS   D   DG ID+ +    +TVS  Y   + K  L G   S   +   R 
Sbjct: 135 TVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAART 194
Query: 150 TIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 180
           T HH  F+    R P  RFG  H+YNNY  N
Sbjct: 195 TYHHNRFENVESRVPLQRFGLSHIYNNYFNN 225

>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 49  RGQRIKLTGKGLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID-- 98
           +G        G+R+    H VII N+     +GG   D D I ++ NS      IW+D  
Sbjct: 77  KGANGSAANFGIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHN 134
Query: 99  -------RCS-LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRV 149
                  +CS   D   DG ID+ +    +TVS  Y   + K  L G   S   +   R 
Sbjct: 135 TVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAART 194
Query: 150 TIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 180
           T HH  F+    R P  RFG  H+YNNY  N
Sbjct: 195 TYHHNRFENVESRVPLQRFGLSHIYNNYFNN 225

>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 62/141 (43%), Gaps = 21/141 (14%)
Query: 59  GLRLKECEH-VIICNLE---FEGGRGHDVDGIQIKPNSR----HIWID---------RCS 101
           G+R+    H VII N+     +GG   D D I ++ NS      IW+D         +CS
Sbjct: 87  GIRVVGNAHNVIIQNMTIGLLQGGE--DADSISLEGNSSGEPSKIWVDHNTVFASLTKCS 144
Query: 102 -LRDYD-DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT 159
              D   DG ID+ +    +TVS  Y   + K  L G   S   +   R T HH  F+  
Sbjct: 145 GAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENV 204
Query: 160 RQRHPRLRFGKVHLYNNYTRN 180
             R P  R G  H+YNNY  N
Sbjct: 205 ESRVPLQRRGLSHIYNNYFNN 225

>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 59  GLRLKECEHVIICNLE--FEGGRGHDVDGIQIKPNSRHIWIDRCSL----------RDYD 106
           G+ +K+   V++ N+   +  G   D D I++  +S ++W+D   L           D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 107 ---DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH 163
              +  +DI   S  +TVS  Y     K   +G D S   D    +T HH  ++    R 
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNARL 219
Query: 164 PRLRFGKVHLYNNYTRN 180
           P  R G VH YNN   N
Sbjct: 220 PLQRGGLVHAYNNLYTN 236

>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 19/137 (13%)
Query: 59  GLRLKECEHVIICNLE--FEGGRGHDVDGIQIKPNSRHIWIDRCSL----------RDYD 106
           G+ +K+   V++ N+   +  G   D D I++  +S ++W+D   L           D D
Sbjct: 104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDND 162
Query: 107 ---DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH 163
              +  +DI   S  +TVS  Y     K   +G D S   D    +T HH  ++    + 
Sbjct: 163 TTFESAVDIKGASNTVTVSYNYIHGVKK---VGLDGSSSSDTGRNITYHHNYYNDVNAKL 219
Query: 164 PRLRFGKVHLYNNYTRN 180
           P  R G VH YNN   N
Sbjct: 220 PLQRGGLVHAYNNLYTN 236
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	4e-77
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	1e-75
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	1e-71
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	2e-63
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	9e-61
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	2e-57
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	6e-57
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	2e-56
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	5e-56
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	1e-54
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	1e-52
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	6e-09
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	2e-08
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	6e-05
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	3e-04

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340

 Score =  237 bits (606), Expect = 4e-77
 Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 28/290 (9%)

Query: 12  LREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIIC 71
           L +         IV + +        + V S KTI G     K+ G GL +K+ ++VII 
Sbjct: 38  LEKYTTAEGKYVIVVDGTIVFEPKREIKVLSDKTIVGIND-AKIVGGGLVIKDAQNVIIR 96

Query: 72  NLEFEG--------GRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSR 123
           N+ FEG        G+ +D D I ++ NS HIWID  +  + +DG +DI + S  ITVS 
Sbjct: 97  NIHFEGFYMEDDPRGKKYDFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSW 155

Query: 124 CYFTQHDKTMLIGADPSHVGD---RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 180
             F  HDK  L+G+      +   +  +VT HH  F    QR PR+RFG  H++NN+   
Sbjct: 156 NKFVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSM 215

Query: 181 W----------GIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRS 230
                       IY V +++ ++++ + N +                   +    G +  
Sbjct: 216 GLRTGVSGNVFPIYGVASAMGAKVHVEGNYFMGYGAVMAEAGIAFLPTRIMGPVEGYLTL 275

Query: 231 EGDI----FLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQ 276
                   F    + ++      +    P EYY  +T++   D  K ++ 
Sbjct: 276 GEGDAKNEFYYCKEPEVRPVEEGKPALDPREYYD-YTLDPVQDVPKIVVD 324

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346

 Score =  233 bits (596), Expect = 1e-75
 Identities = 89/285 (31%), Positives = 131/285 (45%), Gaps = 24/285 (8%)

Query: 5   IDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRL 62
           ++  PG+LR G  R + LWI+F  +  I L   L V+ +KTIDGRG  + L   G  L +
Sbjct: 51  VNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFM 110

Query: 63  KECEHVIICNLEFE-------------------GGRGHDVDGIQIKPNSRHIWIDRCSLR 103
           ++  HVI+ +L                           D D I ++ N  + WID  SL 
Sbjct: 111 RKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLS 169

Query: 104 DYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFD-GTRQR 162
           D  DGLID+T  ST IT+S  +F  H K ML+G D ++  D+ ++VT+    F     QR
Sbjct: 170 DCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQR 229

Query: 163 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADK-L 221
            PR R+G VH+ NN    W IYA+  S    I S+ N + A  +    E       +   
Sbjct: 230 MPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPS 289

Query: 222 EAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEA 266
              + + RS  D F+ GA         E  +++ +E +      A
Sbjct: 290 ACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKVENGNA 334

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326

 Score =  222 bits (568), Expect = 1e-71
 Identities = 67/298 (22%), Positives = 118/298 (39%), Gaps = 36/298 (12%)

Query: 5   IDDGPGSLREGCRRREPLWIVFEVSGTIHLSSY-------------LSVSSYKTIDGRGQ 51
           I     +        EPL I   V+GTI   +                     +I G G 
Sbjct: 31  IQQLIDNRSRSNNPDEPLTIY--VNGTITQGNSPQSLIDVKNHRGKAHEIKNISIIGVGT 88

Query: 52  RIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSL--------- 102
             +  G G+RL    ++II N+     R  +   I++  +S+++WID             
Sbjct: 89  NGEFDGIGIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGD 148

Query: 103 RDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR 162
            DY DGL+D+ R +  ITVS   F  H KTML+G   +       ++T HH  F+    R
Sbjct: 149 SDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAP-DKITYHHNYFNNLNSR 207

Query: 163 HPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG----QKKRTFEYYTEKAA 218
            P +R+  VH++NNY ++    A+ + V ++++ + N ++          T         
Sbjct: 208 VPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADPTTGFIKGPVGW 267

Query: 219 DKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQ 276
                 +G     G++F+    + L +       F P   Y    +++ + +   + Q
Sbjct: 268 FYGSPSTGYWNLRGNVFVNTPNSHLNSTTN----FTPPYSY---QVQSATQAKSSVEQ 318

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355

 Score =  202 bits (515), Expect = 2e-63
 Identities = 73/325 (22%), Positives = 123/325 (37%), Gaps = 57/325 (17%)

Query: 12  LREGCRRREPLWIVFEVSGTIHLSSY--------------LSVSSYKTIDGRGQRIKLTG 57
            ++     +    + +V+G I +S                +S+ S  TI G G   K T 
Sbjct: 36  FKKALNGTDSSAKIIKVTGPIDISGGKAYTSFDDQKARSQISIPSNTTIIGVGSNGKFTN 95

Query: 58  KGLRLKECEHVIICNLEFEG------------GRGHDVDGIQIKPNSRHIWIDRCSLRDY 105
             L +K  ++VI+ NL  E             G   + D   I  NS ++W+D  ++ D 
Sbjct: 96  GSLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVI-DNSTNVWVDHVTISDG 154

Query: 106 D-----------------DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDR--C 146
                             DG +DI + S  +T+S   F  HDKT+LIG   S+       
Sbjct: 155 SFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGK 214

Query: 147 IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN-------WGIYAVCASVESQIYSQCN 199
           +RVT H+ +FD   +R PR+RFG +H YNN             +Y+        I S+ N
Sbjct: 215 LRVTFHNNVFDRVTERAPRVRFGSIHAYNNVYLGDVKHSVYPYLYSFGLGTSGSILSESN 274

Query: 200 IYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYY 259
            +     K       E +  K    +  + S+    + G+             + P+  Y
Sbjct: 275 SFTLSNLKSIDGKNPECSIVK--QFNSKVFSDKGSLVNGS-TTTKLDTCGLTAYKPTLPY 331

Query: 260 PTWTMEAPSDSLKQILQICTGWQSI 284
             ++ +  + SL   +    G+  +
Sbjct: 332 K-YSAQTMTSSLATSINNNAGYGKL 355

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361

 Score =  196 bits (498), Expect = 9e-61
 Identities = 64/311 (20%), Positives = 116/311 (37%), Gaps = 50/311 (16%)

Query: 6   DDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKEC 65
                 ++            +         S +++ +  T+ G G   K     L +   
Sbjct: 51  GAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGT 110

Query: 66  E---HVIICNLEFE------------GGRGHDVDGIQIKPNSRHIWIDRCSLRDYD---- 106
           +   +VII N+  +             G   + D + I   + H+WID  ++ D +    
Sbjct: 111 DGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDD 170

Query: 107 -------------DGLIDITRQSTDITVSRCYFTQHDKTMLIGA-DPSHVGDRC-IRVTI 151
                        DG +DI R S  +T+S     QHDKTMLIG  D +   D+  + VT+
Sbjct: 171 MYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTL 230

Query: 152 HHCLFDGTRQRHPRLRFGKVHLYNNYTRN-------WGIYAVCASVESQIYSQCNIYEAG 204
            + +F+   +R PR+R+G +H +NN  +           Y+        + S+ N +   
Sbjct: 231 FNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA 290

Query: 205 QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTM 264
                      KA   ++  +G I S+    L G+    L+G G    +     Y  + +
Sbjct: 291 N------LSASKACKVVKKFNGSIFSDNGSVLNGSAVD-LSGCG-FSAYTSKIPYI-YDV 341

Query: 265 EAPSDSLKQIL 275
           +  +  L Q +
Sbjct: 342 QPMTTELAQSI 352

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353

 Score =  186 bits (474), Expect = 2e-57
 Identities = 51/262 (19%), Positives = 86/262 (32%), Gaps = 42/262 (16%)

Query: 9   PGSLREGCRRREPLWIVFEVSGTIHLSSYLS---------------VSSYKTIDGRGQRI 53
             + ++      PL I +  +    +++  +                   K I   G   
Sbjct: 39  DANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANG 98

Query: 54  KLTGKGLRLKECEHVIICNLEFEGGRGHDV--DGIQIKPNSRHIWIDRCSLRDYD----- 106
                G+ +K+   V++ N+      G     D I++  +S ++W+D   L   +     
Sbjct: 99  SSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDG 157

Query: 107 --------DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDG 158
                   +  +DI   S  +TVS  Y     K  L G+  S   D    +T HH  ++ 
Sbjct: 158 TPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSS---DTGRNITYHHNYYND 214

Query: 159 TRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAA 218
              R P  R G VH YNN   N     +      Q   + N +E      T  Y  +   
Sbjct: 215 VNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNF- 273

Query: 219 DKLEAKSGLIRSEGDIFLKGAQ 240
                  G    +G+   K A 
Sbjct: 274 -------GTWVLKGNNITKPAD 288

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416

 Score =  187 bits (476), Expect = 6e-57
 Identities = 82/312 (26%), Positives = 123/312 (39%), Gaps = 51/312 (16%)

Query: 5   IDDGPGSLREGCRRREPLWIVFEVSGTIHLS-SYLSVSSYKTIDGRGQRIKLTGKGLRLK 63
           + +   +         PL      S         + V S  +I G G+  K+ G G  +K
Sbjct: 94  LREYDPATWGKKEVEGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIKGGGFLIK 153

Query: 64  ECEHVIICNLEFE----------------GGRGHDVDGIQIKPNSRHIWIDRCSLRDYD- 106
             ++VII N+EFE                G    + D I I+  S HIWID  +  D D 
Sbjct: 154 NVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIE-GSSHIWIDHNTFTDGDH 212

Query: 107 ----------------DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRC-IRV 149
                           DG +DI   S  IT+S   FT HDK  LIGA  S + D   +RV
Sbjct: 213 PDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRV 272

Query: 150 TIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI------YAVCASVESQIYSQCNIYEA 203
           T+HH  +    QR PR+RFG+VH+YNNY     +      YA    V SQIY+Q N +  
Sbjct: 273 TLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLADYDFQYAWGVGVFSQIYAQNNYFSF 332

Query: 204 G---QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTG---VGEECVFHPSE 257
                     + +++      E  + +    G  ++    +   +    + +E  + P  
Sbjct: 333 DWDIDPSLIIKVWSKNEESMYETGTIVDLPNGRRYIDLVASYNESNTLQLKKEVTWKPMF 392

Query: 258 YYPTWTMEAPSD 269
           Y+    +     
Sbjct: 393 YH---VIHPTPS 401

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330

 Score =  183 bits (466), Expect = 2e-56
 Identities = 59/280 (21%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 21  PLWIVFEVSGTIHLSS---------------YLSVSSYKTIDGRGQRIKLTGKGLRLKEC 65
              +V   +G     +                +   S  TI G        G  + +   
Sbjct: 36  SGGLVLNYTGKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTIKGANGSAANFGIRV-VGNA 94

Query: 66  EHVIICNLEFEGGRG-HDVDGIQIKPNS----RHIWIDRCSL-----------RDYDDGL 109
            +VII N+     +G  D D I ++ NS      IW+D  ++               DG 
Sbjct: 95  HNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGG 154

Query: 110 IDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFG 169
           ID+ +    +TVS  Y   + K  L G   S   +   R T HH  F+    R P  RFG
Sbjct: 155 IDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFG 214

Query: 170 KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIR 229
             H+YNNY  N     +   +      + N +E  +   T    +E     L        
Sbjct: 215 LSHIYNNYFNNVTTSGINVRMGGIAKIESNYFENIKNPVTSRDSSEIGYWDLINNYVGSG 274

Query: 230 SEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSD 269
                          T      VF  S  Y  +T+   + 
Sbjct: 275 ITWGTPDGSKPYANATNWISTKVFPESLGY-IYTVTPAAQ 313

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359

 Score =  183 bits (466), Expect = 5e-56
 Identities = 41/248 (16%), Positives = 85/248 (34%), Gaps = 15/248 (6%)

Query: 2   CLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLR 61
           C    +              + + ++ +G + ++    V+S K+I G+G +  + GKGLR
Sbjct: 72  CQVAINLHSWCDNYQASAPKVSVTYDKAGILPIT----VNSNKSIVGQGTKGVIKGKGLR 127

Query: 62  L-KECEHVIICNLEFEGGRGHDV---DGIQIKPNSRHIWIDRCSL-RDYDDGLIDITRQS 116
           +    ++VII N+         V   D I +  +S  +WID  +  R     ++  T   
Sbjct: 128 VVSGAKNVIIQNIAVTDINPKYVWGGDAITVD-DSDLVWIDHVTTARIGRQHIVLGTSAD 186

Query: 117 TDITVSRCYFTQHDKTMLIGADPSHVG----DRCIRVTIHHCLFDGTRQRHPRLRFGK-V 171
             +T+S                  + G         VT+    F     R P+++    +
Sbjct: 187 NRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLL 246

Query: 172 HLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSE 231
           H  NN   N+  +A        + ++ N+++            +  +      +    S 
Sbjct: 247 HAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASV 306

Query: 232 GDIFLKGA 239
                +  
Sbjct: 307 FGRSCQLN 314

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399

 Score =  181 bits (460), Expect = 1e-54
 Identities = 67/307 (21%), Positives = 109/307 (35%), Gaps = 56/307 (18%)

Query: 6   DDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKEC 65
              P +  +                       + + +  TI G G   K+ G   ++K  
Sbjct: 91  AYDPSTWGKKEPSGTQEEARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIK-S 149

Query: 66  EHVIICNLEFE----------------GGRGHDVDGIQIKPNSRHIWIDRCSLR------ 103
           ++VII N+EF+                G      D I I     HIWID C+        
Sbjct: 150 DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITIN-GGTHIWIDHCTFNDGSRPD 208

Query: 104 -----------DYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRC-IRVTI 151
                       + DG  D +  +  IT+S  Y+  HDK+ + G+  S   D   +++T+
Sbjct: 209 STSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITL 268

Query: 152 HHCLFDGTRQRHPRLRFGKVHLYNNYTRNWG-------IYAVCASVESQIYSQCNIYEAG 204
           HH  +    Q  PR+RFG+VH+YNNY             YA      S+IY+Q N+ +  
Sbjct: 269 HHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVP 328

Query: 205 QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLL--TGVGEECVFHPSEYYPTW 262
                                G    +    L G Q       G+     + PS +    
Sbjct: 329 GLSAAKTISV--------FSGGTALYDSGTLLNGTQINASAANGLSSSVGWTPSLHG--- 377

Query: 263 TMEAPSD 269
           +++A ++
Sbjct: 378 SIDASAN 384

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359

 Score =  175 bits (444), Expect = 1e-52
 Identities = 38/200 (19%), Positives = 74/200 (37%), Gaps = 11/200 (5%)

Query: 13  REGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRL-KECEHVIIC 71
            + C   EP      V      +  ++V+S K++ G G    + GKGLR+    E++II 
Sbjct: 79  DDWCENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQ 138

Query: 72  NLEFEGGRGHDV---DGIQIKPNSRHIWIDRCSL-RDYDDGLIDITRQSTDITVSRCYFT 127
           N+         V   D I +  +   +WID  +  R      +  T     ++++  Y  
Sbjct: 139 NIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYID 197

Query: 128 QHDKTMLIGADPSH----VGDRCIRVTIHHCLFDGTRQRHPRLRFGK-VHLYNNYTRNWG 182
                        +    +      VT+       T  R P+++    +H  NNY  +  
Sbjct: 198 GVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDIS 257

Query: 183 IYAVCASVESQIYSQCNIYE 202
            +A        + ++ N+++
Sbjct: 258 GHAFEIGEGGYVLAEGNVFQ 277

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609

 Score = 55.6 bits (133), Expect = 6e-09
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 24/136 (17%)

Query: 45  TIDGRGQRIKLT--------GKGLRLKECEHVIICNLEFEGGRGH-------------DV 83
           T+DG  +R+              L ++ C +V I ++E      H               
Sbjct: 114 TLDGNNKRLGQGISGIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLG 173

Query: 84  DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 143
           DG      S +IWI+ C    + D  I     S  I +  CY   HD  +    +   + 
Sbjct: 174 DGTTAPNPSENIWIENCEATGFGDDGITTH-HSQYINILNCYS--HDPRLTANCNGFEID 230

Query: 144 DRCIRVTIHHCLFDGT 159
           D    V + +    G 
Sbjct: 231 DGSRHVVLSNNRSKGC 246

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 17/110 (15%), Positives = 35/110 (31%), Gaps = 13/110 (11%)

Query: 60  LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGL---------I 110
           +   E  +V+   L  +    ++ DGI+   NS+++ +        DD +          
Sbjct: 357 IMNLENHNVVANGLIHQTYDANNGDGIEFG-NSQNVMVFNNFFDTGDDCINFAAGTGEKA 415

Query: 111 DITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR 160
                     +   YF      ++ G   SH G     +   + +   T 
Sbjct: 416 QEQEPMKGAWLFNNYFRMGHGAIVTG---SHTGAWIEDILAENNVMYLTD 462

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 23/119 (19%), Positives = 39/119 (32%), Gaps = 29/119 (24%)

Query: 60  LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGL---------- 109
           +     E+VII N+E     G + DGI  + + +++ I++C     DD +          
Sbjct: 216 IHPVLSENVIIRNIEISS-TGPNNDGIDPE-SCKYMLIEKCRFDTGDDSVVIKSGRDADG 273

Query: 110 IDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG-------DRCIR-VTIHHCLFDGTR 160
             I   S  I V                  SH G          +R V   + ++    
Sbjct: 274 RRIGVPSEYILVRDNLVIS---------QASHGGLVIGSEMSGGVRNVVARNNVYMNVE 323

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	100.0
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	100.0
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	100.0
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	100.0
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	100.0
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	100.0
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	100.0
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	100.0
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	100.0
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	100.0
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	100.0
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	98.99
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	98.98
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	98.95
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	98.77
2inu_A	410	Insulin fructotransferase; right-handed parallel b	98.7
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	98.61
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.58
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.55
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	98.55
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	98.55
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.52
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	98.51
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	98.5
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	98.44
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	98.43
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	98.42
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	98.41
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	98.41
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	98.39
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	98.37
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	98.22
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	98.15
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	98.15
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	98.14
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	98.08
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	98.08
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	98.05
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	98.04
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	98.03
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	97.99
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	97.94
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	97.84
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	97.77
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.68
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	97.67
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	97.63
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	97.6
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	97.56
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	97.55
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	97.54
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	97.4
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	97.39
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	97.38
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	97.38
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	97.3
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	97.26
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	97.13
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	96.95
3grh_A	422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	96.81
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	96.69
2inu_A	410	Insulin fructotransferase; right-handed parallel b	96.55
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	96.36
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	96.32
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	96.06
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	95.8
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	95.59
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	95.58
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	90.67

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=100.00  E-value=5.7e-65  Score=479.46  Aligned_cols=268  Identities=29%  Similarity=0.435  Sum_probs=228.2

Q ss_pred             CccCCCCCCchHHHHhhcCCCeEEEEEeceEEEeC--ceeEeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcC
Q 022635            1 MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLS--SYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGG   78 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~~~P~~Ivf~v~G~I~l~--~~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~   78 (294)
                      ||+|+|     ||+||++++||+|+  |+|+|+++  ++|.|.|||||+|||.. +|.|.||+|++++|||||||+||.+
T Consensus        32 VTtl~d-----Lr~al~~~~PriIv--v~G~I~~~~~~~l~v~snkTI~G~ga~-~I~G~Gi~I~~a~NVIIrnl~i~~~  103 (340)
T 3zsc_A           32 VRTAEE-----LEKYTTAEGKYVIV--VDGTIVFEPKREIKVLSDKTIVGINDA-KIVGGGLVIKDAQNVIIRNIHFEGF  103 (340)
T ss_dssp             ECSHHH-----HHHHHTSSSCEEEE--EEEEEEEEEEEEEEECSSEEEEEEEEE-EEEEEEEEEESCEEEEEESCEEECC
T ss_pred             eCCHHH-----HHHHHhCCCCEEEE--ECcEEEeCCcceEEecCCCEEEeccCc-EEecCceEEEcCceEEEeCeEEECC
Confidence            788887     99999999999998  58999998  89999999999999887 9999999999999999999999987


Q ss_pred             CC--------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCC--CC-cce
Q 022635           79 RG--------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV--GD-RCI  147 (294)
Q Consensus        79 ~~--------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~--~d-~~~  147 (294)
                      ..        .++|+|.|+ +++|||||||+|+|+.||++|+++++++||||||+|++|+|++|+|++|+..  +| +.+
T Consensus       104 ~~~~~~~~~~~~~DaI~i~-~s~nVWIDHcs~s~~~Dg~idi~~~s~~vTISnn~f~~h~k~~LiG~sd~~~~~~d~g~~  182 (340)
T 3zsc_A          104 YMEDDPRGKKYDFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKEDPEQAGQAY  182 (340)
T ss_dssp             CCTTCTTSCSSCCCSEEEE-SCEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEESCSBCCEECCCTTSCHHHHHHSC
T ss_pred             ccccCccCCcCCCCeEEEe-cCCcEEEEeeeeccCCccceEEecCCceEEEECcEeccCceeeEeCcCCCCccccccCCc
Confidence            41        278999998 8999999999999999999999989999999999999999999999998652  33 358


Q ss_pred             EEEEEceeecCCCCCcceeecCeEEEEcceEeC----------ccceeEEecCCceEEEEceEEEcCCcc-----ceeee
Q 022635          148 RVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN----------WGIYAVCASVESQIYSQCNIYEAGQKK-----RTFEY  212 (294)
Q Consensus       148 ~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n----------~~~~~~~~~~~~~v~~e~N~f~~g~~~-----~~~~~  212 (294)
                      +||||||||+++.+|+||+|+|++|++||||++          |..|++++++++++++|+|||++...+     .++++
T Consensus       183 ~vT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~~~~~yai~~~~~a~i~~E~N~F~~~~~~~~~~~~~~p~  262 (340)
T 3zsc_A          183 KVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGAKVHVEGNYFMGYGAVMAEAGIAFLP  262 (340)
T ss_dssp             EEEEESCEEESCCBCTTEEESSEEEEESCEEECCCCCSCSSCCSCCEEEEEETTCEEEEESCEEECSCHHHHHTTCCBEE
T ss_pred             EEEEECeEecCCCCCCCcccCCeEEEEccEEECCccccccccceeeeeEecCCCCEEEEECcEEECCCcccccccccccc
Confidence            999999999999999999999999999999999          999999999999999999999998651     11122


Q ss_pred             ehhcccccccCCcceEEEeC----CeEeeCceeeecccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCCCc
Q 022635          213 YTEKAADKLEAKSGLIRSEG----DIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSI  284 (294)
Q Consensus       213 ~~~~~~~~~~~~~G~~~~~g----n~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~~  284 (294)
                      ..     ...+..||+...+    |.|.++........+....+|.|.++|+ |++++|+ +||++|...||++..
T Consensus       263 ~~-----~~~~~~G~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~pY~-Y~l~~a~-~v~~~V~~~AG~gk~  331 (340)
T 3zsc_A          263 TR-----IMGPVEGYLTLGEGDAKNEFYYCKEPEVRPVEEGKPALDPREYYD-YTLDPVQ-DVPKIVVDGAGAGKL  331 (340)
T ss_dssp             EE-----ECTTTBCEEEECCGGGCCEEESBCCCCCBCSSTTSCSCCGGGTCC-CCCCCGG-GHHHHHHHHCSTTCC
T ss_pred             cc-----cCCCCceEEEecCcccceeeccCCCCccccccCCccccccCCCce-eecCcHH-HhhHHHhhcCCCCee
Confidence            11     1235789999999    9998765432111011234566666685 9999985 899999999999873

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=100.00  E-value=6.1e-65  Score=477.44  Aligned_cols=267  Identities=24%  Similarity=0.404  Sum_probs=227.5

Q ss_pred             CccCCCCCCchHHHHhh-------cCCCeEEEEEeceEEEeC----ceeEec---------cCeEEEeeccceEEEcCCE
Q 022635            1 MCLFIDDGPGSLREGCR-------RREPLWIVFEVSGTIHLS----SYLSVS---------SYKTIDGRGQRIKLTGKGL   60 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~-------~~~P~~Ivf~v~G~I~l~----~~l~v~---------sn~TI~G~g~g~~i~g~gl   60 (294)
                      ||||+|     ||+||+       +++||+|+  |+|+|+|+    ++|.|+         |||||+|+|.+++|.|.+|
T Consensus        25 Vttl~d-----L~~Al~~~~~~~~~~~p~iI~--V~G~I~l~~~~~~~i~v~~~~~~~~~~sn~TI~G~g~~~~i~G~gl   97 (326)
T 3vmv_A           25 ASTGAQ-----IQQLIDNRSRSNNPDEPLTIY--VNGTITQGNSPQSLIDVKNHRGKAHEIKNISIIGVGTNGEFDGIGI   97 (326)
T ss_dssp             ESSHHH-----HHHHHHHHHHSSCTTSCEEEE--ECSEEESTTCSSSSEEESCTTCTTSCEEEEEEEECTTCCEEESCCE
T ss_pred             ECCHHH-----HHHHHhhcccccCCCCCEEEE--EeeEEecCCCCCceEEEecccccccCCCCeEEEecCCCeEEeCcEE
Confidence            789988     999999       89999887  89999999    789998         9999999999999999999


Q ss_pred             EEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCC---------CCCeeEeeeCCccEEEEccEEeecCe
Q 022635           61 RLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY---------DDGLIDITRQSTDITVSRCYFTQHDK  131 (294)
Q Consensus        61 ~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~---------~Dg~id~~~~s~~vTiS~~~f~~h~~  131 (294)
                      +|++++|||||||+|+.+..+++|+|.|+..++|||||||+|+|+         .||++|+++++++||||||+|++|+|
T Consensus        98 ~i~~a~NVIIrNl~i~~~~~~~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h~k  177 (326)
T 3vmv_A           98 RLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWK  177 (326)
T ss_dssp             EEESEEEEEEESCEEECCCSTTSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEEEE
T ss_pred             EEEecceEEEECeEEEcCCCCCCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEecCce
Confidence            999999999999999998878899999983389999999999975         49999999999999999999999999


Q ss_pred             eeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccce--
Q 022635          132 TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRT--  209 (294)
Q Consensus       132 ~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~--  209 (294)
                      ++|||++|+... .+.+||||||||+++.+|+||+|+|++|++||||++|..|++++++++++++|+|||+++....+  
T Consensus       178 ~~LiG~sd~~~~-~~~~vT~~~N~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~~~~~~~~~  256 (326)
T 3vmv_A          178 TMLVGHTDNASL-APDKITYHHNYFNNLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADP  256 (326)
T ss_dssp             CEEECSSSCGGG-CCEEEEEESCEEEEEEECTTEEESCEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEESCCSBCT
T ss_pred             EEEECCCCCCcc-cCccEEEEeeEecCCcCcCCcccCCcEEEEccEEECCCceEEeecCCcEEEEEceEEECCcCccccc
Confidence            999999976432 13589999999999999999999999999999999999999999999999999999999832100  


Q ss_pred             -eeeehhc-ccccccCCcceEEEeCCeEeeCceeeecccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCCC
Q 022635          210 -FEYYTEK-AADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       210 -~~~~~~~-~~~~~~~~~G~~~~~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~  283 (294)
                       ...+..+ ....+++..||+...+|.|+++....    ..+...|+||  |+ |++++|+ ++|++|...||++.
T Consensus       257 ~~~~~~~~~~~~~~s~~~g~~~~~~n~~~n~~~~~----~~~~~~~~p~--Y~-y~l~~a~-~V~~~V~~~AG~Gk  324 (326)
T 3vmv_A          257 TTGFIKGPVGWFYGSPSTGYWNLRGNVFVNTPNSH----LNSTTNFTPP--YS-YQVQSAT-QAKSSVEQHSGVGV  324 (326)
T ss_dssp             TTCCBCSSEECCSCSSSBCEEEEESCEEESSCCTT----CCCCCCCCCS--SC-CCCCCHH-HHHHHHHHHCSSSS
T ss_pred             cccccccceeeccCCCCceEEEEECCeEccCcCcc----cCCCcccccc--Ce-eecCCHH-HhhHHHhccCCCcc
Confidence             0000000 00112457899999999999874321    2345778887  53 8999995 89999999999976

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=100.00  E-value=4.1e-64  Score=476.30  Aligned_cols=274  Identities=33%  Similarity=0.496  Sum_probs=233.6

Q ss_pred             CccCCCC----CCchHHHHhhcCCCeEEEEEeceEEEeCceeEeccCeEEEeeccceEEEc--CCEEEeeeccEEEEeeE
Q 022635            1 MCLFIDD----GPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTG--KGLRLKECEHVIICNLE   74 (294)
Q Consensus         1 vtnl~ds----g~GsLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~g--~gl~i~~~~NVIirnl~   74 (294)
                      ||+|+|+    +|||||+||++++|++|||+++|+|+|+++|.|.|+|||+|+|.++.|.|  .+|.|..++|||||||+
T Consensus        43 VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~l~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~  122 (346)
T 1pxz_A           43 VTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLH  122 (346)
T ss_dssp             ECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCE
T ss_pred             ECChHHcccccCcchhHHHhccCCCeEEEEcCCcEEecCccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeE
Confidence            7999998    99999999999999999999999999999999999999999999999998  58999999999999999


Q ss_pred             EEcCC-------------------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEe
Q 022635           75 FEGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLI  135 (294)
Q Consensus        75 i~~~~-------------------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li  135 (294)
                      |+...                   ..++|||.|+ ++++||||||+|+|+.||++|+++++++||||||+|++|+|++||
T Consensus       123 i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~  201 (346)
T 1pxz_A          123 IHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLL  201 (346)
T ss_dssp             EECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEE
T ss_pred             EEeeccCCCceEEeccCcccccccCCCCCEEEEe-cCceEEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEE
Confidence            99652                   2678999998 899999999999999999999988999999999999999999999


Q ss_pred             cCCCCCCCCcceEEEEEceee-cCCCCCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccc---eee
Q 022635          136 GADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKR---TFE  211 (294)
Q Consensus       136 G~~d~~~~d~~~~vT~hhN~f-~~~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~---~~~  211 (294)
                      |++|+..+|+.++||||||+| +++.+|+||+|+|.+|++||||++|+.|++++++++++++|+|||++++.+.   +..
T Consensus       202 G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~  281 (346)
T 1pxz_A          202 GHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTK  281 (346)
T ss_dssp             SCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEE
T ss_pred             CCCCccccCCceEEEEEeeEEeCCccccCccEecceEEEEeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEE
Confidence            999877677779999999999 9999999999999999999999999999999999999999999999998642   222


Q ss_pred             eehhcccccccCCcceEEEeCCeEeeCceeeecccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCC
Q 022635          212 YYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQ  282 (294)
Q Consensus       212 ~~~~~~~~~~~~~~G~~~~~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~  282 (294)
                      ++..  .....+...+|++.+++|+||+.+...........|.++  | +|++++|+ +|+.+ .++|||.
T Consensus       282 ~~~~--~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~~y~~~--~-~~~~~~~~-~v~~~-~~~aG~~  345 (346)
T 1pxz_A          282 RIGC--ESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSN--E-AFKVENGN-AAPQL-TKNAGVV  345 (346)
T ss_dssp             ECSC--SCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCCCTT--T-CCCCCCGG-GHHHH-TTTCSSC
T ss_pred             Eecc--CCccccccccEecCCCeEEeceEecCCCCCccCCCCCcc--c-ccccCCHH-HHHHH-hhhccCC
Confidence            2210  001112345799999999999986422111111224444  4 37889986 89987 5689985

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=100.00  E-value=1.8e-61  Score=455.83  Aligned_cols=262  Identities=23%  Similarity=0.291  Sum_probs=221.2

Q ss_pred             CccCCCCCCchHHHHhhc---CCCeEEEEEeceEEEeCc---------------eeEeccCeEEEeeccceEEEcCCEEE
Q 022635            1 MCLFIDDGPGSLREGCRR---REPLWIVFEVSGTIHLSS---------------YLSVSSYKTIDGRGQRIKLTGKGLRL   62 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~---~~P~~Ivf~v~G~I~l~~---------------~l~v~sn~TI~G~g~g~~i~g~gl~i   62 (294)
                      ||+|+     +||+||++   ++||+|+|  +|+|++.+               +|++.|||||+|+.  ++|.|.+|+|
T Consensus        20 Vtt~~-----~L~~al~~~~~~~p~iI~~--~G~i~~~~~~~~c~~~~~~~~~~~l~v~sn~TI~G~~--a~i~g~gl~i   90 (330)
T 2qy1_A           20 VATFE-----AMQSAIDSYSGSGGLVLNY--TGKFDFGTIKDVCAQWKLPAKTVQIKNKSDVTIKGAN--GSAANFGIRV   90 (330)
T ss_dssp             ECSHH-----HHHHHHHHSCSSSCEEEEE--CCBCCGGGCCCGGGSTTSCCCEEEEESCCSEEEEECT--TCBBSSEEEE
T ss_pred             cCCHH-----HHHHHHhccCCCCCEEEEE--ccEEecccccccccccccccceeEEEcCCCeEEECCC--cEEeeeeEEE
Confidence            67776     79999985   89999996  89999985               78889999998874  5789999999


Q ss_pred             e-eeccEEEEeeEEEcCCC-CCCCceEEcC----CCceEEEEceeecCCC-----------CCeeEeeeCCccEEEEccE
Q 022635           63 K-ECEHVIICNLEFEGGRG-HDVDGIQIKP----NSRHIWIDRCSLRDYD-----------DGLIDITRQSTDITVSRCY  125 (294)
Q Consensus        63 ~-~~~NVIirnl~i~~~~~-~~~D~i~i~~----~~~~vwIDHcs~s~~~-----------Dg~id~~~~s~~vTiS~~~  125 (294)
                      + +++|||||||+||.+.. +++|+|.|++    .++|||||||+|+|+.           ||+||+++++++||||||+
T Consensus        91 ~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~VTISnn~  170 (330)
T 2qy1_A           91 VGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNY  170 (330)
T ss_dssp             ESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEEEEESCE
T ss_pred             eCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceEEEEcce
Confidence            8 89999999999998764 4799999984    4999999999999876           9999999999999999999


Q ss_pred             EeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCC
Q 022635          126 FTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ  205 (294)
Q Consensus       126 f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~  205 (294)
                      |++|+|++|+|++|+...++.++||||||||+++.+|+||+|+|++|++||||++|..|++++++++++++|+|||++++
T Consensus       171 f~~h~k~~L~G~sd~~~~~~~~~vT~h~N~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~  250 (330)
T 2qy1_A          171 VYNYQKVALNGYSDSDTKNSAARTTYHHNRFENVESRVPLQRFGLSHIYNNYFNNVTTSGINVRMGGIAKIESNYFENIK  250 (330)
T ss_dssp             EEEEEECCEESSSTTCGGGGGCEEEEESCEEEEEEECTTEEESSEEEEESCEEEEECSCSEEEETTCEEEEESCEEEEEE
T ss_pred             eccCCeEEEECCCCccccCCCceEEEECcEEcCCCCCCCceecceEEEEeeEEEcccceEeccCCCcEEEEEccEEECCC
Confidence            99999999999998776666689999999999999999999999999999999999999999999999999999999886


Q ss_pred             ccceeeeehhcccccccCCcceEEEeCCeEee--Cceeeecc--------cccceeeecCCCCCCCcccCChhHHHHHHH
Q 022635          206 KKRTFEYYTEKAADKLEAKSGLIRSEGDIFLK--GAQAQLLT--------GVGEECVFHPSEYYPTWTMEAPSDSLKQIL  275 (294)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~~--g~~~~~~~--------~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv  275 (294)
                      .+...+         +....|+|..++| |++  ++......        .+.+...|.|++.|+ |++++|+ +||+.|
T Consensus       251 ~p~~~~---------~~~~~g~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-y~~~~a~-~V~~~V  318 (330)
T 2qy1_A          251 NPVTSR---------DSSEIGYWDLINN-YVGSGITWGTPDGSKPYANATNWISTKVFPESLGYI-YTVTPAA-QVKAKV  318 (330)
T ss_dssp             SSEEEC---------SSSSBCEEEEESC-EECSCEECCCCSSSSCCEECTTCCCSSCCCSCCCSC-CCCCCGG-GHHHHH
T ss_pred             Cceeec---------cCCCceeEEEeCC-cccccccccccCcccccccccccCcccccccCCCce-eeeCCHH-HHHHhh
Confidence            543221         1245689999999 777  33211000        112334577555675 8999995 899999


Q ss_pred             HhccCCCC
Q 022635          276 QICTGWQS  283 (294)
Q Consensus       276 ~~~AG~~~  283 (294)
                      .+.||++.
T Consensus       319 ~~~AGag~  326 (330)
T 2qy1_A          319 IATAGAGK  326 (330)
T ss_dssp             HHHCSTTS
T ss_pred             HhccCCCc
Confidence            99999975

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=100.00  E-value=1.2e-60  Score=453.93  Aligned_cols=263  Identities=24%  Similarity=0.395  Sum_probs=212.8

Q ss_pred             CccCCCCCCchHHHHh-hcCCCeEEEEEeceEEEeCc--------------eeEeccCeEEEeeccceEEEcCCEEE---
Q 022635            1 MCLFIDDGPGSLREGC-RRREPLWIVFEVSGTIHLSS--------------YLSVSSYKTIDGRGQRIKLTGKGLRL---   62 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~-~~~~P~~Ivf~v~G~I~l~~--------------~l~v~sn~TI~G~g~g~~i~g~gl~i---   62 (294)
                      ||||+|     ||+|| ++++||+|+  |+|+|++.+              +|+|.|||||+|+|.+++|.|.+|+|   
T Consensus        38 Vtt~~d-----L~~al~~~~~p~vI~--V~GtI~~~~~~~~~s~~~~~~~~~l~v~snkTI~G~G~~~~i~g~gl~i~~~  110 (361)
T 1pe9_A           38 VTNISE-----FTSALSAGAEAKIIQ--IKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGT  110 (361)
T ss_dssp             ECSHHH-----HHHHHTTTTSCEEEE--ECSEEETTTTCCCCSHHHHHHHSEEECCSSEEEEECTTCCEEESSEEEEEGG
T ss_pred             eCCHHH-----HHHHHhcCCCcEEEE--ECCEEecCCccccccccccccceeEEecCCcEEEccCCCeEEecCEEEEecC
Confidence            577776     99999 899999765  899999975              68889999999999999999999999   


Q ss_pred             eeeccEEEEeeEEEcCCC------------CCCCceEEcCC-CceEEEEceeecCC-----------------CCCeeEe
Q 022635           63 KECEHVIICNLEFEGGRG------------HDVDGIQIKPN-SRHIWIDRCSLRDY-----------------DDGLIDI  112 (294)
Q Consensus        63 ~~~~NVIirnl~i~~~~~------------~~~D~i~i~~~-~~~vwIDHcs~s~~-----------------~Dg~id~  112 (294)
                      ++++|||||||+|+.+..            .++|+|.|+ + ++|||||||+|+|+                 .||+||+
T Consensus       111 ~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~-~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~~~DgllDi  189 (361)
T 1pe9_A          111 DGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNIT-NGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDI  189 (361)
T ss_dssp             GTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEE-TTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEE
T ss_pred             CCCceEEEeCeEEEcCcccccccccccCcccCCceEEee-cCCceEEEEccEeecccccccccccccCcceeeccceeee
Confidence            789999999999997531            468999998 6 99999999999997                 6999999


Q ss_pred             eeCCccEEEEccEEeecCeeeEecCCCCCC-CC-cceEEEEEceeecCCCCCcceeecCeEEEEcceEeC---cc----c
Q 022635          113 TRQSTDITVSRCYFTQHDKTMLIGADPSHV-GD-RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN---WG----I  183 (294)
Q Consensus       113 ~~~s~~vTiS~~~f~~h~~~~liG~~d~~~-~d-~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n---~~----~  183 (294)
                      ++++++||||||+|.+|+|++|||++|+.. +| +.++||||||||+++.+|+||+|+|++|+|||||++   |+    .
T Consensus       190 ~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~R~G~~Hv~NN~~~~~~~~~~~~~~  269 (361)
T 1pe9_A          190 KRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQ  269 (361)
T ss_dssp             CTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEESSCEEEEESCEEEEETTCSSSCCC
T ss_pred             ecCCCcEEEEeeEEcCCCceeEecCCCCCcccccCcceEEEECeEEcCccccCcccccceEEEEcceEecccCCCccccc
Confidence            999999999999999999999999998754 44 468999999999999999999999999999999974   44    6


Q ss_pred             eeEEecCCceEEEEceEEEcCCcc--ceeeeehhcccccccCCcceEEEeCCeEeeCceeeecccccceeeecCCCCCCC
Q 022635          184 YAVCASVESQIYSQCNIYEAGQKK--RTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPT  261 (294)
Q Consensus       184 ~~~~~~~~~~v~~e~N~f~~g~~~--~~~~~~~~~~~~~~~~~~G~~~~~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~  261 (294)
                      |++++++++++++|+|||++++.+  .....+       ..+....+...+|++ +|+......  .....|.|...|+ 
T Consensus       270 ya~g~~~~~~i~~E~N~F~~~~~~~~~~~~~~-------~~~~~~~~~~~gn~~-~g~~~~~~~--~g~~~~~~~~~y~-  338 (361)
T 1pe9_A          270 YSFGIGTSGSVLSEGNSFTIANLSASKACKVV-------KKFNGSIFSDNGSVL-NGSAVDLSG--CGFSAYTSKIPYI-  338 (361)
T ss_dssp             CSEEECTTCEEEEESCEEEEETCCGGGGGGGE-------EESSCCEEEEESCEE-TTEECCCTT--SSCBCCCSCCCSC-
T ss_pred             eEecCCCCcEEEEECCEEECCCCccccCceeE-------EecCCcEEEecCccc-cCcCcccCC--CCccccccCCCCc-
Confidence            899999999999999999998433  000011       011111246677754 665432211  1124576665574 


Q ss_pred             ccc-CChhHHHHHHHHhccCCCC
Q 022635          262 WTM-EAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       262 y~~-~~a~~a~~~vv~~~AG~~~  283 (294)
                      |++ ++| ++||++|.+.|||..
T Consensus       339 y~~~~~a-~~V~~~V~~~AGag~  360 (361)
T 1pe9_A          339 YDVQPMT-TELAQSITDNAGSGK  360 (361)
T ss_dssp             CCCCCCC-HHHHHHHHHHCSTTC
T ss_pred             cccCCcH-HHHHHHHHhccCCCc
Confidence            755 455 589999999999864

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=100.00  E-value=2.6e-59  Score=444.39  Aligned_cols=270  Identities=27%  Similarity=0.422  Sum_probs=211.7

Q ss_pred             CccCCCCCCchHHHHh--hcCCCeEEEEEeceEEEeCc--------------eeEeccCeEEEeeccceEEEcCCEEEee
Q 022635            1 MCLFIDDGPGSLREGC--RRREPLWIVFEVSGTIHLSS--------------YLSVSSYKTIDGRGQRIKLTGKGLRLKE   64 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~--~~~~P~~Ivf~v~G~I~l~~--------------~l~v~sn~TI~G~g~g~~i~g~gl~i~~   64 (294)
                      ||||+|     ||+||  ++++||+  |.|+|+|++.+              +|+|.|||||+|+|.+++|.|.+|+|++
T Consensus        30 Vtt~~~-----L~~al~~~~~~p~V--I~V~GtI~~~~~~~~~s~~~~~~~~~l~v~sn~TI~G~G~~~~i~g~gl~i~~  102 (355)
T 1pcl_A           30 VKNISD-----FKKALNGTDSSAKI--IKVTGPIDISGGKAYTSFDDQKARSQISIPSNTTIIGVGSNGKFTNGSLVIKG  102 (355)
T ss_pred             eCCHHH-----HHHHHhhCCCCcEE--EEECCEEecCCccccccccccccceeEEeCCCeEEEEecCCeEEecCEEEEec
Confidence            688887     99999  7788994  55999999974              6888999999999999999999999998


Q ss_pred             eccEEEEeeEEEcCC------------CCCCCceEEcCCCceEEEEceeecCC-----------------CCCeeEeeeC
Q 022635           65 CEHVIICNLEFEGGR------------GHDVDGIQIKPNSRHIWIDRCSLRDY-----------------DDGLIDITRQ  115 (294)
Q Consensus        65 ~~NVIirnl~i~~~~------------~~~~D~i~i~~~~~~vwIDHcs~s~~-----------------~Dg~id~~~~  115 (294)
                      ++|||||||+||.+.            ..++|+|.|+ +++|||||||+|+|+                 .||++|++++
T Consensus       103 ~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~-~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~  181 (355)
T 1pcl_A          103 VKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKG  181 (355)
T ss_pred             CCeEEEeeeEEEcCcccccccccccCccccCceEEec-CCCcEEEEeeEEeccccCccccccccCccccccccceeeecC
Confidence            999999999999753            1458999997 899999999999997                 6999999999


Q ss_pred             CccEEEEccEEeecCeeeEecCCCCCC-CC-cceEEEEEceeecCCCCCcceeecCeEEEEcceEeC---cc----ceeE
Q 022635          116 STDITVSRCYFTQHDKTMLIGADPSHV-GD-RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN---WG----IYAV  186 (294)
Q Consensus       116 s~~vTiS~~~f~~h~~~~liG~~d~~~-~d-~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n---~~----~~~~  186 (294)
                      +++||||||+|.+|+|++|+|++|+.. +| +.++||||||||.++.+|+||+|+|++|++||||++   |+    .|++
T Consensus       182 s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR~G~~Hv~NN~~~~~~~~~~~~~~ya~  261 (355)
T 1pcl_A          182 SDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNNVYLGDVKHSVYPYLYSF  261 (355)
T ss_pred             CCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeCCcccCCceecceEEEEcceEEcccCCCccccceEe
Confidence            999999999999999999999998754 55 468999999999999999999999999999999975   44    6889


Q ss_pred             EecCCceEEEEceEEEcCCccceeeeehhcccccccCCcce-EEEeCCeEeeCceeeecccccceeeecCCCCCCCcccC
Q 022635          187 CASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGL-IRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTME  265 (294)
Q Consensus       187 ~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G~-~~~~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~~  265 (294)
                      ++++++++++|+|||++++.+.+.... . .........|. +...++ +++|....... ......|.+...|+ |+++
T Consensus       262 g~~~~~~i~~e~N~F~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~gn-~~~g~~~~~~~-~~~~~~~~~~~~y~-y~~~  336 (355)
T 1pcl_A          262 GLGTSGSILSESNSFTLSNLKSIDGKN-P-ECSIVKQFNSKVFSDKGS-LVNGSTTTKLD-TCGLTAYKPTLPYK-YSAQ  336 (355)
T ss_pred             cCCCCcEEEEEccEEECCCcccccccc-c-cccccccccCceEEecCc-cccCcCccccc-cCCccccccCCCCC-ccCC
Confidence            999999999999999998433221110 0 00000111222 344454 55665441111 11124566654564 7554


Q ss_pred             ChhHHHHHHHHhccCCCC
Q 022635          266 APSDSLKQILQICTGWQS  283 (294)
Q Consensus       266 ~a~~a~~~vv~~~AG~~~  283 (294)
                      .+.+++|++|...|||..
T Consensus       337 ~~a~~v~~~V~~~AGag~  354 (355)
T 1pcl_A          337 TMTSSLATSINNNAGYGK  354 (355)
T ss_pred             CcHHHHHHHHHhccCCCC
Confidence            433689999999999864

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=100.00  E-value=7.1e-59  Score=448.82  Aligned_cols=266  Identities=33%  Similarity=0.480  Sum_probs=214.0

Q ss_pred             CccCCCCCCchHHHHhhcC--------CCeEEEEEeceEEEeCc------------------------------------
Q 022635            1 MCLFIDDGPGSLREGCRRR--------EPLWIVFEVSGTIHLSS------------------------------------   36 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~~--------~P~~Ivf~v~G~I~l~~------------------------------------   36 (294)
                      ||+|+|     |++||++.        +||+|+  |+|+|++.+                                    
T Consensus        35 Vtt~ae-----L~~al~~~~~~~~~~~~priI~--V~GtId~~~~~~g~~~~c~~~~~~~~~~~~y~~~~~~~~~~~~~~  107 (416)
T 1vbl_A           35 VTNRTE-----LIQALGGNNHTNQYNSVPKIIY--VKGTIDLNVDDNNQPVGPDFYKDPHFDFEAYLREYDPATWGKKEV  107 (416)
T ss_dssp             ECSHHH-----HHHHTTSCTTGGGGCCSCEEEE--ECSEEESSBCTTSCBCCHHHHCCTTCCHHHHHHHHCHHHHTTSCC
T ss_pred             eCCHHH-----HHHHHhccccccccCCCCEEEE--ECCEEecccCCCCccccccccccCCcchhhhhhhhCccccccccC
Confidence            466664     99999864        899998  899999852                                    


Q ss_pred             -------------------eeEeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCCC----------------C
Q 022635           37 -------------------YLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG----------------H   81 (294)
Q Consensus        37 -------------------~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~----------------~   81 (294)
                                         +|+|.|||||+|+|.+++|.|.+|+|++++|||||||+|+.+..                .
T Consensus       108 ~g~~~~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~g~gl~i~~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~  187 (416)
T 1vbl_A          108 EGPLEEARVRSQKKQKDRIMVYVGSNTSIIGVGKDAKIKGGGFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNS  187 (416)
T ss_dssp             CSHHHHHHHHHHHHHHHHHEEECCSSEEEEECTTCCEEESCEEEEESCEEEEEESCEEECCCCSSCEEETTSTTTCEEEC
T ss_pred             CCCcccccccccccccceeEEEeCCCeeEEecCCCeEEecCEEEeecCceEEEeCeEEEcCccccccccccccccccccC
Confidence                               57888999999999999999999999999999999999997531                3


Q ss_pred             CCCceEEcCCCceEEEEceeecCC-----------------CCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCC
Q 022635           82 DVDGIQIKPNSRHIWIDRCSLRDY-----------------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD  144 (294)
Q Consensus        82 ~~D~i~i~~~~~~vwIDHcs~s~~-----------------~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d  144 (294)
                      +.|+|.|+ +++|||||||+|+|+                 .||+||+++++++||||||+|.+|+|++|||++|+...|
T Consensus       188 ~~DaI~i~-~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~DGl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d  266 (416)
T 1vbl_A          188 EYDSISIE-GSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQHDGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMAD  266 (416)
T ss_dssp             CCCSEEEE-SCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEESSCEEEEEESCEEEEEEECCEECSCTTCGGG
T ss_pred             CCceEEec-CCceEEEEccEEecCCCcccccccccCcceeecccceeeecCCCcEEEEeeEEcCCCceeEeCCCCCCccc
Confidence            67999997 899999999999997                 599999999999999999999999999999999876666


Q ss_pred             c-ceEEEEEceeecCCCCCcceeecCeEEEEcceEeCcc------ceeEEecCCceEEEEceEEEcCCccceeeeehhcc
Q 022635          145 R-CIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWG------IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKA  217 (294)
Q Consensus       145 ~-~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~------~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~  217 (294)
                      + .++||||||||.++.+|+||+|+|++|+|||||+++.      .|++++++++++++|+|||++++.+.....+.   
T Consensus       267 ~g~~~VT~hhN~f~~~~~R~Pr~R~G~~Hv~NN~~~n~~~~~~~~~ya~g~~~~~~i~~E~N~F~~~~~~~~~~~~~---  343 (416)
T 1vbl_A          267 SGHLRVTLHHNYYKNVTQRLPRVRFGQVHIYNNYYEFSNLADYDFQYAWGVGVFSQIYAQNNYFSFDWDIDPSLIIK---  343 (416)
T ss_dssp             TTCCCEEEESCEEEEEEECSSEESSCEEEEESCEEEECTTSSSCCCCSEEEETTCEEEEESCEEEESSCCCGGGSEE---
T ss_pred             CCceEEEEECcEecCCccCCcccccceEEEEcceEECCCCCcccceeEeccCCCcEEEEECCEEECCCCCCccceee---
Confidence            4 5899999999999999999999999999999999753      38999999999999999999986431110000   


Q ss_pred             cccccCCcceEEEeCCeEee--C-ceeee-------cc-cccceeeecCCCCCCCcccCChhHHHHHHHHhccCCCC
Q 022635          218 ADKLEAKSGLIRSEGDIFLK--G-AQAQL-------LT-GVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       218 ~~~~~~~~G~~~~~gn~~~~--g-~~~~~-------~~-~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~  283 (294)
                        ........++.+||++.+  | ....+       +. ...+...|.|+  | .|++++|+ +||++|.+.|||+.
T Consensus       344 --~~~~~~~~~~~~gn~~~~~ng~~~~d~~~~~n~~~~~~~~~~~~~~P~--~-~y~~~~a~-~V~~~V~~~AGag~  414 (416)
T 1vbl_A          344 --VWSKNEESMYETGTIVDLPNGRRYIDLVASYNESNTLQLKKEVTWKPM--F-YHVIHPTP-SVPALVKAKAGAGN  414 (416)
T ss_dssp             --EECSSCCEEEEESCEEEETTEEEECCHHHHHHHHCSSCCEECCSCCCC--C-CSCCCCGG-GHHHHHHHHCSTTC
T ss_pred             --eeccCCceEEecCCEEeecCCCcccccccccccCCcccccCCcccCCc--c-ccccCCHH-HHHHHHhhccCCCc
Confidence              001123356788998863  3 11111       00 11223456666  3 27899995 89999999999975

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=100.00  E-value=4.2e-58  Score=441.64  Aligned_cols=260  Identities=28%  Similarity=0.485  Sum_probs=211.3

Q ss_pred             CccCCCCCCchHHHHh---hcCCCeEEEEEeceEEEeCc-----------------------------------------
Q 022635            1 MCLFIDDGPGSLREGC---RRREPLWIVFEVSGTIHLSS-----------------------------------------   36 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~---~~~~P~~Ivf~v~G~I~l~~-----------------------------------------   36 (294)
                      ||+|+|     |++||   ++++||+|+  |+|+|++.+                                         
T Consensus        35 Vtt~ae-----L~~al~~~~~~~priI~--v~GtId~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~  107 (399)
T 2o04_A           35 VSNRNQ-----LVSALGKETNTTPKIIY--IKGTIDMNVDDNLKPLGLNDYKDPEYDLDKYLKAYDPSTWGKKEPSGTQE  107 (399)
T ss_dssp             ECSHHH-----HHHHHCCTTCCSCEEEE--ECSEEESSBCTTCCBCCHHHHCCTTCCHHHHHHHHCHHHHTTSCCCSHHH
T ss_pred             eCCHHH-----HHHHHHhccCCCCEEEE--EcCEEecccCCccccccccccccCCcchhhhhhcccccccccccCCCccc
Confidence            456664     99999   789999998  899999852                                         


Q ss_pred             --------------eeEeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCCC----------------CCCCce
Q 022635           37 --------------YLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG----------------HDVDGI   86 (294)
Q Consensus        37 --------------~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~----------------~~~D~i   86 (294)
                                    +|+|.|||||+|+|.+++|.|.+|+|+. +|||||||+||.+..                .+.|+|
T Consensus       108 ~~~~~s~~~~~~~~~i~v~snkTI~G~G~~~~i~g~gl~i~~-~NVIIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI  186 (399)
T 2o04_A          108 EARARSQKNQKARVMVDIPANTTIVGSGTNAKVVGGNFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNI  186 (399)
T ss_dssp             HHHHHHHHHHHHHHEEECCSSEEEEESSSCCEEESCEEEECS-EEEEEESCEEECCCCSSCEEETTSSTTCEEECCCCSE
T ss_pred             ccccccccccccceEEEeCCCceEEeccCCeEEeeCEEEeeC-CCEEEeCeEEecCccccccccccccccccccCCCCeE
Confidence                          5788999999999999999999999997 999999999997531                367999


Q ss_pred             EEcCCCceEEEEceeecCC-----------------CCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCc-ceE
Q 022635           87 QIKPNSRHIWIDRCSLRDY-----------------DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDR-CIR  148 (294)
Q Consensus        87 ~i~~~~~~vwIDHcs~s~~-----------------~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~-~~~  148 (294)
                      .|+ +++|||||||+|+|+                 .||+||+++++++||||||+|.+|+|++|||++|+..+|+ +++
T Consensus       187 ~i~-~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~  265 (399)
T 2o04_A          187 TIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLK  265 (399)
T ss_dssp             EEE-SCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEESCCTTCGGGTTCCC
T ss_pred             Eec-CCCcEEEEeeeeecCCCccccccccccceeeccccceeeeccCCcEEEEeeEEcCCCceeEeCCCCCCccccCcee
Confidence            997 899999999999996                 5999999999999999999999999999999998776664 589


Q ss_pred             EEEEceeecCCCCCcceeecCeEEEEcceEeCcc-------ceeEEecCCceEEEEceEEEcCCccc--eeeeehhcccc
Q 022635          149 VTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWG-------IYAVCASVESQIYSQCNIYEAGQKKR--TFEYYTEKAAD  219 (294)
Q Consensus       149 vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~-------~~~~~~~~~~~v~~e~N~f~~g~~~~--~~~~~~~~~~~  219 (294)
                      ||||||||+++.+|+||+|+|++|+|||||++|.       .|++++++++++++|+|||+++..+.  +...+      
T Consensus       266 vT~h~N~f~~~~~R~Pr~R~G~~Hv~NN~~~n~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~~~~~~~~~~~~~------  339 (399)
T 2o04_A          266 ITLHHNRYKNIVQAAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTISVF------  339 (399)
T ss_dssp             EEEESCEEEEEEECTTEESSCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTTCCSGGGEEEC------
T ss_pred             EEEECcEecCCcccCCCcccceEEEEcceEECCCCCCccceeeEeccCCCcEEEEEceEEECCCCCccceeeec------
Confidence            9999999999999999999999999999999874       38999999999999999999973221  11111      


Q ss_pred             cccCCcceEEEeCCeEeeCceeeec--ccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCCC
Q 022635          220 KLEAKSGLIRSEGDIFLKGAQAQLL--TGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       220 ~~~~~~G~~~~~gn~~~~g~~~~~~--~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~  283 (294)
                         .....+...+|.+. |+...+.  ........|.|++.   |++++|+ +||++|.+.|||+.
T Consensus       340 ---s~~~~~~~~gn~~~-g~~~d~~~~~~~~~~~~~~p~~~---y~~~~a~-~V~~~V~~~AGag~  397 (399)
T 2o04_A          340 ---SGGTALYDSGTLLN-GTQINASAANGLSSSVGWTPSLH---GSIDASA-NVKSNVINQAGAGK  397 (399)
T ss_dssp             ---TTCCBCEEESCEET-TEECCHHHHTTCBSCCSCCCCCC---CCCCCHH-HHHHHHHHHCSTTS
T ss_pred             ---cCCceEEEeCceec-CcccccccccccCCCcccCCccc---cccCCHH-HHHHhHHhcCCCCc
Confidence               01122456777664 4322210  11123355777642   6889985 89999999999975

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=100.00  E-value=7.2e-57  Score=427.33  Aligned_cols=258  Identities=21%  Similarity=0.214  Sum_probs=206.5

Q ss_pred             chHHHHhhc-----------CCCeEEEEEeceEEEeC----------------ceeEe---ccCeEEEeeccceEEEcCC
Q 022635           10 GSLREGCRR-----------REPLWIVFEVSGTIHLS----------------SYLSV---SSYKTIDGRGQRIKLTGKG   59 (294)
Q Consensus        10 GsLr~a~~~-----------~~P~~Ivf~v~G~I~l~----------------~~l~v---~sn~TI~G~g~g~~i~g~g   59 (294)
                      .+|++||++           .+|+++||.|+|+|++.                .++.|   .+||||+|+..  .+.|.+
T Consensus        27 ~~L~~al~~~~~~~~g~~~~~~~~p~vi~v~GtId~~~~~~~~~~~~~~~~~~~~~~i~~~~sn~TI~G~~~--~~~g~g  104 (353)
T 1air_A           27 QDIVNIIDAARLDANGKKVKGGAYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGANG--SSANFG  104 (353)
T ss_dssp             HHHHHHHHHTTBCTTSCBCTBCSSCEEEEECCCCHHHHHHHHTSGGGSTTSCCCEEEEESBCSCEEEEECTT--CCBSSE
T ss_pred             HHHHHHHHhhccccccccccCCCceEEEEEccEEeccccccccccccccccCCCceEEEecCCCEEEEeccC--CCCCce
Confidence            389999976           46777788899999982                56777   48999999943  356889


Q ss_pred             EEEeeeccEEEEeeEEEcCCC--CCCCceEEcCCCceEEEEceeecCC-------------CCCeeEeeeCCccEEEEcc
Q 022635           60 LRLKECEHVIICNLEFEGGRG--HDVDGIQIKPNSRHIWIDRCSLRDY-------------DDGLIDITRQSTDITVSRC  124 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~--~~~D~i~i~~~~~~vwIDHcs~s~~-------------~Dg~id~~~~s~~vTiS~~  124 (294)
                      |.|++++|||||||+||.+..  .++|+|.|+ +++|||||||+|+|.             .||++|+++++++||||||
T Consensus       105 l~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~-~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~VTISnn  183 (353)
T 1air_A          105 IWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYN  183 (353)
T ss_dssp             EEEESCCSEEEESCEEESCSCGGGTCCSEEEE-SCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEEEEESC
T ss_pred             EEEeccCcEEEeccEEEeCCCCCCCCCeEEee-CCCcEEEEeeEEecCCcccccccccccccccceeeecccCcEEEEee
Confidence            999999999999999997643  578999998 899999999999985             3999999999999999999


Q ss_pred             EEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcC
Q 022635          125 YFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG  204 (294)
Q Consensus       125 ~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g  204 (294)
                      +|.+|+|++|+|++++..   .++||||||||+++.+|+||+|+|++|++||||++|..|++++++++++++|+|||+++
T Consensus       184 ~f~~h~k~~LiG~sd~~~---g~~vT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~~~~~i~~e~N~F~~~  260 (353)
T 1air_A          184 YIHGVKKVGLDGSSSSDT---GRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKA  260 (353)
T ss_dssp             EEEEEEECCEESSSTTCC---CCEEEEESCEEEEEEECSCEEESSEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEE
T ss_pred             EEcCCCceeEECCCcCCC---CceEEEEceEEcCCcCCCCCCcCceEEEEccEEECCCCceeccCCCcEEEEEceEEECC
Confidence            999999999999987532   26999999999999999999999999999999999999999999999999999999988


Q ss_pred             CccceeeeehhcccccccCCcceEEEeCCeEee--------Ccee--e--e-cc-cccceeeecCCCCCCCcccCChhHH
Q 022635          205 QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLK--------GAQA--Q--L-LT-GVGEECVFHPSEYYPTWTMEAPSDS  270 (294)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~~--------g~~~--~--~-~~-~~~~~~~~~p~~~y~~y~~~~a~~a  270 (294)
                      ..+...++        +....|+|...+|.+.+        .+..  .  + .. ...+.. +.|+.+|+ |++++|+ +
T Consensus       261 ~~p~~~~~--------~~~~~g~~~~~~n~~~~~~d~~~~~~~~~s~~~~~~~~~~~~~~g-~~~~~~Y~-y~~~~a~-~  329 (353)
T 1air_A          261 INPVTSRY--------DGKNFGTWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTG-TFPTVAYN-YSPVSAQ-C  329 (353)
T ss_dssp             ESSEEECS--------SSSSCCEEEEESCSCCSTHHHHHHTEECCCCSSCCEECTTCCCCS-CCCCCCSC-CCCCCHH-H
T ss_pred             CCceEecC--------CCCCCceeEecccccccccccceecccccCCCccccccccccccC-CccccceE-EecCCHH-H
Confidence            65432211        12346888888886642        1100  0  0 00 011111 12334474 8999995 8


Q ss_pred             HHHHHHhccCCCCc
Q 022635          271 LKQILQICTGWQSI  284 (294)
Q Consensus       271 ~~~vv~~~AG~~~~  284 (294)
                      ||+.|...||++..
T Consensus       330 V~~~V~~~AGag~~  343 (353)
T 1air_A          330 VKDKLPGYAGVGKN  343 (353)
T ss_dssp             HHHHGGGTSSSSST
T ss_pred             hhhhhhhccCCCcc
Confidence            99999999998763

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=100.00  E-value=3.2e-54  Score=410.02  Aligned_cols=261  Identities=18%  Similarity=0.154  Sum_probs=203.3

Q ss_pred             CccCCCCCCchHHHHhhcCCCeEEEEEeceEEEeC---------------------------------------------
Q 022635            1 MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLS---------------------------------------------   35 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~~~P~~Ivf~v~G~I~l~---------------------------------------------   35 (294)
                      ||+|+|     ||+||++++||+|+|  +|+|++.                                             
T Consensus        25 Vtt~~d-----L~~al~~~~prvIvv--~gti~~~~~~G~~t~~~c~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~t~~   97 (359)
T 1idk_A           25 PDTIDE-----LVSYLGDDEARVIVL--TKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYY   97 (359)
T ss_dssp             CCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGGHHHHHSCCSCEEEEEEE
T ss_pred             cCCHHH-----HHHHHcCCCceEEEE--CCEEEeccccCccccccccccccccccccccccccccccccccCcccccccc
Confidence            677775     999999999999995  8999974                                             


Q ss_pred             ----ceeEeccCeEEEeeccceEEEcCCEEEe-eeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCC
Q 022635           36 ----SYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDD  107 (294)
Q Consensus        36 ----~~l~v~sn~TI~G~g~g~~i~g~gl~i~-~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~D  107 (294)
                          .+|+|.|||||+|+|.+++|.|.+|+|+ .++|||||||+||.+.+   +++|+|.|+ +++|||||||+|+|..|
T Consensus        98 ~~~~~~l~v~snkTI~G~G~~~~i~G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~DaI~i~-~s~nVwIDHcs~s~~~d  176 (359)
T 1idk_A           98 NAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGR  176 (359)
T ss_dssp             SSTTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEEC-SCEEEEEESCEEEEESS
T ss_pred             ccccceEEeCCCceEEEecCCeEEecceEEEecCCCcEEEeCeEEEcccccccccCCceeec-CCCcEEEEeeEeecCCC
Confidence                3588999999999999999999999998 79999999999998643   678999998 89999999999999999


Q ss_pred             CeeEe-eeCCccEEEEccEEeec------------CeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecC-eEEE
Q 022635          108 GLIDI-TRQSTDITVSRCYFTQH------------DKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFG-KVHL  173 (294)
Q Consensus       108 g~id~-~~~s~~vTiS~~~f~~h------------~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g-~~h~  173 (294)
                      ++++. ++++++||||||+|.+|            ++++|+|++|        +||||||||+++.+|+||+|+| .+|+
T Consensus       177 ~~~~~g~~~s~~VTISnn~f~~~~~~s~~~~G~h~~~~~L~G~sd--------~vT~hhN~f~~~~~R~Pr~r~g~~~hv  248 (359)
T 1idk_A          177 QHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDAD--------LVTMKGNYIYHTSGRSPKVQDNTLLHA  248 (359)
T ss_dssp             CSEEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSC--------EEEEESCEEESBCSCTTEECTTCEEEE
T ss_pred             CcEEecccCcceEEEECcEecCCcccccccCccccceEEEEecCC--------CeEEEceEeecCcccCccccCCceEEE
Confidence            99986 67899999999999843            4899999876        8999999999999999999998 5999


Q ss_pred             EcceEeCccceeEEecCCceEEEEceEEEcCCccceee---eehhccc---ccccCCcceEEEeCCeEeeCceeeecccc
Q 022635          174 YNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFE---YYTEKAA---DKLEAKSGLIRSEGDIFLKGAQAQLLTGV  247 (294)
Q Consensus       174 ~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~---~~~~~~~---~~~~~~~G~~~~~gn~~~~g~~~~~~~~~  247 (294)
                      +||||++|..|++.+++++++++|+|||++++.+....   .+.....   ......-|++. ..|.|.+....  ..  
T Consensus       249 ~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~p~~~~~G~~~~~~~~~~~~~c~~~lg~~~-~~N~~~~sg~~--~~--  323 (359)
T 1idk_A          249 VNNYWYDISGHAFEIGEGGYVLAEGNVFQNVDTVLETYEGEAFTVPSSTAGEVCSTYLGRDC-VINGFGSSGTF--SE--  323 (359)
T ss_dssp             ESCEEEEEEEEEEEECTTCEEEEESCEEEEEEEEEEEESSEEECCSSTTGGGGGHHHHSSCC-CCCEEESSCCC--CC--
T ss_pred             ECCEEecccceEEeccCCcEEEEEccEEECCCCceecCCCCEEeecCcccchhhhhccCcce-eecccccCCcc--cc--
Confidence            99999999999999999999999999999886542210   0000000   00001112222 24555432111  11  


Q ss_pred             cceeeecCCCCCCCcccCChhHHHHHHHHhccCCCC
Q 022635          248 GEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       248 ~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~  283 (294)
                      .....++++..|..|++++|+ .+++.|.+.||+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~a~-~v~~~V~~~AG~g~  358 (359)
T 1idk_A          324 DSTSFLSDFEGKNIASASAYT-SVASRVVANAGQGN  358 (359)
T ss_dssp             BCCTTGGGGTTSCCCCCCCGG-GHHHHHHHHCSTTC
T ss_pred             CCcccccccCCccccccCCHH-HhhhhhhccCCCcc
Confidence            011113333334357899996 79988889999864

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=100.00  E-value=2.5e-53  Score=404.01  Aligned_cols=260  Identities=19%  Similarity=0.210  Sum_probs=200.1

Q ss_pred             CccCCCCCCchHHHHhhcCCCeEEEEEeceEEEeC---------------------------------------------
Q 022635            1 MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLS---------------------------------------------   35 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~~~P~~Ivf~v~G~I~l~---------------------------------------------   35 (294)
                      ||+|+|     ||+||++++||+|+|  +|+|++.                                             
T Consensus        25 Vtt~~~-----L~~al~~~~prvIvv--~gtid~~g~~g~~~~~~c~~~~~~~~~~~~i~~~~~~~~~~~~~p~~ti~~~   97 (359)
T 1qcx_A           25 PTTTDE-----LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYD   97 (359)
T ss_dssp             CCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGGHHHHHCTTSCEEEEEEE
T ss_pred             eCCHHH-----HHHHHcCCCCeEEEE--CcEEeeccccccccccccccccccccccceecccccccccccCCccceeeec
Confidence            678877     999999999999993  5665531                                             


Q ss_pred             ----ceeEeccCeEEEeeccceEEEcCCEEEe-eeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCC
Q 022635           36 ----SYLSVSSYKTIDGRGQRIKLTGKGLRLK-ECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDD  107 (294)
Q Consensus        36 ----~~l~v~sn~TI~G~g~g~~i~g~gl~i~-~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~D  107 (294)
                          .+|.|.|||||+|+|.+++|.|.+|+|+ .++|||||||+||.+..   +++|+|.|+ ++++||||||+|+|..|
T Consensus        98 ~a~~~~i~v~snkTI~G~g~~~~I~G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~DaI~i~-~s~nvwIDHcs~s~~~d  176 (359)
T 1qcx_A           98 KAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVD-DSDLVWIDHVTTARIGR  176 (359)
T ss_dssp             GGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEE-SCCCEEEESCEEEEESS
T ss_pred             ccccceEEeCCCceEEecCCceEEecceEEEecCCCCEEEeCcEEEecCCcccccCceeEec-CCceEEEEeeEeeccCc
Confidence                2578899999999999999999999998 89999999999998753   678999998 89999999999999999


Q ss_pred             Cee-EeeeCCccEEEEccEEee-----------c-CeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecC-eEEE
Q 022635          108 GLI-DITRQSTDITVSRCYFTQ-----------H-DKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFG-KVHL  173 (294)
Q Consensus       108 g~i-d~~~~s~~vTiS~~~f~~-----------h-~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g-~~h~  173 (294)
                      |++ +.++++++||||||+|.+           | +++||+|++|        ++|||||||.++.+|+||+|++ .+|+
T Consensus       177 ~~~~~~~~~s~~vTISnn~f~~~~~~s~~~~G~H~~~~~l~G~sd--------~vT~~~N~f~~~~~R~Pr~r~~~~~hv  248 (359)
T 1qcx_A          177 QHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSND--------MVTLKGNYFYNLSGRMPKVQGNTLLHA  248 (359)
T ss_dssp             CSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSE--------EEEEESCEEESBCSCTTEECSSEEEEE
T ss_pred             CceeecccccccEEEECcEecCCccccccCcccccceeEEecCCC--------CeehcccEeccCcccCceecCCceEEE
Confidence            998 456789999999999983           4 5789999876        8999999999999999999986 6999


Q ss_pred             EcceEeCccceeEEecCCceEEEEceEEEcCCccceeee----ehhccc---ccccCCcceEEEeCCeEeeCceeeeccc
Q 022635          174 YNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEY----YTEKAA---DKLEAKSGLIRSEGDIFLKGAQAQLLTG  246 (294)
Q Consensus       174 ~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~----~~~~~~---~~~~~~~G~~~~~gn~~~~g~~~~~~~~  246 (294)
                      +||||++|..|++++++++++++|+|||++++.+.....    +.....   ...+..-|++. ..|.|.+....  .. 
T Consensus       249 ~NN~~~n~~~~a~~~~~~~~i~~e~N~F~~~~~~~~~~~~g~~f~~~~~~~~~~c~~~lgr~~-~~N~~~~sg~~--~~-  324 (359)
T 1qcx_A          249 VNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSC-QLNAFGNSGSM--SG-  324 (359)
T ss_dssp             ESCEEEEEEEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHHHHSSCC-CCCEEESCCCC--CC-
T ss_pred             EccEEECccCeEEecCCCceEEEEeeEEECCCcccCcCCCCceeecccccccchhhhccCccc-cccccccCCcc--cC-
Confidence            999999999999999999999999999999876522100    000000   00000011111 23555442111  11 


Q ss_pred             ccceeeecCCCCCCCcccCChhHHHHHHHHhccCCC
Q 022635          247 VGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQ  282 (294)
Q Consensus       247 ~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~  282 (294)
                       .....+++++.|..|++++|+ .+|+.|.+.||+.
T Consensus       325 -~~~~~~~~~~~~~~~~~~~a~-~v~~~V~~~AG~g  358 (359)
T 1qcx_A          325 -SDTSIISKFAGKTIAAAHPPG-AIAQWTMKNAGQG  358 (359)
T ss_dssp             -BCGGGGGGGTTSCCCCCCCGG-GHHHHHHHHSSTT
T ss_pred             -CCcccccccCCccccccccHH-HhhhhhhccCCCC
Confidence             111223444445457899996 7999999999985

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=98.99  E-value=2.8e-08  Score=99.44  Aligned_cols=163  Identities=18%  Similarity=0.270  Sum_probs=110.0

Q ss_pred             hHHHHhhcCCCeEEEEEeceEEEeCceeEeccCeEEEeecc----------------------------ce-----EEEc
Q 022635           11 SLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQ----------------------------RI-----KLTG   57 (294)
Q Consensus        11 sLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~----------------------------g~-----~i~g   57 (294)
                      .|++|+++.  .+|+| ..|+..++.+|.+.++++|.|++.                            ++     +|.|
T Consensus        41 Aiq~Ai~~G--g~V~i-P~GtYlis~~l~l~snv~L~g~g~~~t~L~~~~~~p~~~~li~~lI~a~~~~NItItG~TIDG  117 (609)
T 3gq8_A           41 AFEKAIESG--FPVYV-PYGTFMVSRGIKLPSNTVLTGAGKRNAVIRFMDSVGRGESLMYNENVTTGNENIFLSSFTLDG  117 (609)
T ss_dssp             HHHHHHHTS--SCEEE-CSEEEEESSCEEECSSEEEEESCTTTEEEEECTTCCSSCCSEEESCTTTCCEEEEEEEEEEEC
T ss_pred             HHHHHHHcC--CEEEE-CCccEEEeCceEECCCcEEEEeeCCCCEEEeCCCCCCCCceeeeeeeecccccEEEEeeEEEC
Confidence            488888874  44444 577777766677766666666541                            12     2222


Q ss_pred             -----------------CCEEEeeeccEEEEeeEEEcCCC--------CCCCceEEcCC------CceEEEEceeecCCC
Q 022635           58 -----------------KGLRLKECEHVIICNLEFEGGRG--------HDVDGIQIKPN------SRHIWIDRCSLRDYD  106 (294)
Q Consensus        58 -----------------~gl~i~~~~NVIirnl~i~~~~~--------~~~D~i~i~~~------~~~vwIDHcs~s~~~  106 (294)
                                       ..|.+..++||.|++|+++....        ...|++.++ +      +++|||++|.+....
T Consensus       118 NG~~~g~~~~~~g~~RP~lI~f~~c~NV~I~gVti~NSp~~gI~I~~~~~NDGid~D-Gi~fd~~S~NV~I~Nc~I~~tG  196 (609)
T 3gq8_A          118 NNKRLGQGISGIGGSRESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGLDYPYLGD-GTTAPNPSENIWIENCEATGFG  196 (609)
T ss_dssp             CGGGGCSSCCCSSTTTTCSEEEESCEEEEEEEEEEESCSSCSEEEECSSSSCCCCCT-TCCCSSCCEEEEEESCEEESCS
T ss_pred             CccccCcccccCCCCCccEEEEEeeceEEEEeeEEEeCCCCCeEEeCCCCCccccCC-CccccccceeEEEEeeEEEecC
Confidence                             01556678999999999987532        112556554 5      899999999997766


Q ss_pred             CCeeEeeeCCccEEEEccEEeec-----CeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-------CeEEEE
Q 022635          107 DGLIDITRQSTDITVSRCYFTQH-----DKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-------GKVHLY  174 (294)
Q Consensus       107 Dg~id~~~~s~~vTiS~~~f~~h-----~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-------g~~h~~  174 (294)
                      |.+|.+ +.+++|+|++|.+.+.     .-++-||...       .+|++.+|.|.++. |.=|++.       -.+++.
T Consensus       197 DDcIaI-ksseNI~I~Nc~~~gp~G~S~~~GIsIGsgs-------~NVtV~Nc~i~nt~-~GIrIKt~~~~~~v~NV~I~  267 (609)
T 3gq8_A          197 DDGITT-HHSQYINILNCYSHDPRLTANCNGFEIDDGS-------RHVVLSNNRSKGCY-GGIEIKAHGDAPAAYNISIN  267 (609)
T ss_dssp             SCSEEE-CSCEEEEEESCEEECCSSCSSCCSEEECTTC-------EEEEEESEEEESSS-EEEEEEECTTSCCCEEEEEE
T ss_pred             CCEEEe-cCCeeEEEEeEEEECCCCCCCcccEEccCCc-------ccEEEEeeEEECCC-CEEEEEecCCCCccccEEEE
Confidence            666888 4699999999999543     2455666321       48999999998764 4555542       157899


Q ss_pred             cceEe-CccceeE
Q 022635          175 NNYTR-NWGIYAV  186 (294)
Q Consensus       175 NN~~~-n~~~~~~  186 (294)
                      ||+.+ |+..|.+
T Consensus       268 n~vs~~nvrsyn~  280 (609)
T 3gq8_A          268 GHMSVEDVRSYNF  280 (609)
T ss_dssp             EEEEESCSEEEEE
T ss_pred             CCEeecCceEecc
Confidence            98654 5554544

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=98.98  E-value=4e-08  Score=92.53  Aligned_cols=189  Identities=13%  Similarity=0.118  Sum_probs=125.5

Q ss_pred             hHHHHhhc---CCCeEEEEEeceEEEeCc-------eeEeccCeEEEeeccc-eEEEcC---------------------
Q 022635           11 SLREGCRR---REPLWIVFEVSGTIHLSS-------YLSVSSYKTIDGRGQR-IKLTGK---------------------   58 (294)
Q Consensus        11 sLr~a~~~---~~P~~Ivf~v~G~I~l~~-------~l~v~sn~TI~G~g~g-~~i~g~---------------------   58 (294)
                      .|++|+++   .++.+|+| ..|+..+..       .|.+.+++||.|.|.+ ..|...                     
T Consensus        21 aiq~Ai~~a~~~gg~~v~~-p~G~y~~~~~~~~~~g~l~~~~~v~l~g~g~~~t~l~~~~~~~~~~~~~~~~~~g~~~~~   99 (377)
T 2pyg_A           21 SIQAAIDAAYAAGGGTVYL-PAGEYRVSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLIDGSDQKITGMVRSAYGEETSN   99 (377)
T ss_dssp             HHHHHHHHHHHTTSEEEEE-CSEEEEECCCSSGGGCSEECCTTEEEEESSBTTEEEEECTTCBSCEEEEEECCTTSCCEE
T ss_pred             HHHHHHHHHHhcCCCEEEE-CCeEEEEcccccCCcccEEecCCeEEEEcCCCCcEEEecCCCccCccceEeccCCCcceE
Confidence            58899976   33556665 679988864       7888899999998643 222210                     


Q ss_pred             ----CEEEe-----------------------eeccEEEEeeEEEcCCC---------------------CCCCceEEcC
Q 022635           59 ----GLRLK-----------------------ECEHVIICNLEFEGGRG---------------------HDVDGIQIKP   90 (294)
Q Consensus        59 ----gl~i~-----------------------~~~NVIirnl~i~~~~~---------------------~~~D~i~i~~   90 (294)
                          +|.|.                       .++|+.|++++|+....                     ...|||.+. 
T Consensus       100 ~~~~~~~I~G~~~~~~G~idGw~~~~~~~~~~~~~nv~I~~~~i~n~~~~gi~~~~~~~~~~i~n~~~~~~~~dGI~~~-  178 (377)
T 2pyg_A          100 FGMRDLTLDGNRDNTSGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVAD-  178 (377)
T ss_dssp             EEEEEEEEECCGGGCBSCEEEEEECSCTTSSCCEEEEEEEEEEEECCSSCSEEECSSEEEEEEESCEEESCSSCSEEEE-
T ss_pred             EEEEEEEEECCCccCCccccceecccCccccccccceEEEeEEEEecccceEEeecccCCeEEEeEEeecCCCCceeEe-
Confidence                01111                       36789999999885421                     235666665 


Q ss_pred             CCceEEEEce-eecCCCCCeeEeeeCCccEEEEccEEeecCeeeEe---cCCCCCCCCcceEEEEEceeecCCCCCccee
Q 022635           91 NSRHIWIDRC-SLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLI---GADPSHVGDRCIRVTIHHCLFDGTRQRHPRL  166 (294)
Q Consensus        91 ~~~~vwIDHc-s~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li---G~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~  166 (294)
                      .++++.|.+| .+....|| |++..++++++|++|.+.+...+..+   |+....   ...++++.+|.+.++..+-..+
T Consensus       179 ~s~~~~i~~N~~~~~~~~G-I~~~~~s~~v~I~nN~i~~~~~g~~~~~~g~~~~~---~s~nv~i~~N~~~~n~~~Gi~~  254 (377)
T 2pyg_A          179 YLVDSVFENNVAYANDRHG-FNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLA---LPSNILIDGGAYYDNAREGVLL  254 (377)
T ss_dssp             SEEEEEEESCEEESCSSCS-EEEETTCEEEEEESCEEESCSSCSEEEECCSSCCC---CCEEEEEESCEEESCSSCSEEE
T ss_pred             ccCCcEEECcEEEccccCc-EEEEeccCCeEEECCEEECccCceEEEeccccCCC---CCccEEEECCEEEcCccCceEe
Confidence            5666677777 34445677 56545689999999999976655444   332211   1237899999887766665555


Q ss_pred             ec-CeEEEEcceEeCccceeEEecCCceEEEEceEEEcCC
Q 022635          167 RF-GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ  205 (294)
Q Consensus       167 r~-g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~  205 (294)
                      .. ..+.+.||.+.+....++.......+.+++|.|....
T Consensus       255 ~~~~~v~i~~N~i~~~~~~GI~i~g~~~~~i~~N~i~~n~  294 (377)
T 2pyg_A          255 KMTSDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDNA  294 (377)
T ss_dssp             EEEEEEEEESCEEESCSSCSEEEEEEEEEEEESCEEESCC
T ss_pred             ccccCeEEECCEEECCCCceEEEecCCCcEEECcEEECCc
Confidence            43 4578999999887556665544568889999998643

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=98.77  E-value=9.5e-07  Score=84.83  Aligned_cols=193  Identities=9%  Similarity=0.025  Sum_probs=125.8

Q ss_pred             CCCCCc-------hHHHHhhcCCCeEEEEEeceEEE--eC----ceeEec------cCeEEEeec-cceEEE-----c--
Q 022635            5 IDDGPG-------SLREGCRRREPLWIVFEVSGTIH--LS----SYLSVS------SYKTIDGRG-QRIKLT-----G--   57 (294)
Q Consensus         5 ~dsg~G-------sLr~a~~~~~P~~Ivf~v~G~I~--l~----~~l~v~------sn~TI~G~g-~g~~i~-----g--   57 (294)
                      +|+++|       +|++|+++..|...|+--.|++.  ++    ..|.+.      ..+||.|.+ ...+|.     +  
T Consensus        24 sd~~~G~t~~~P~tiq~Ai~~a~pGdtI~l~~GtY~~~~~e~~~~~i~~~~sGt~~~pIti~~~~g~~~vI~~~~~~g~~  103 (400)
T 1ru4_A           24 NSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQW  103 (400)
T ss_dssp             CTTCCSSSTTSCBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGGGCCEEEECCCCTTCC
T ss_pred             CCCCCCccccCCccHHHHHhhCCCCCEEEECCCeEccccccccceeEEecCCCCCCCCEEEEEecCCCCEEeCCccCCcc
Confidence            355566       99999999888777766799998  44    346663      349999984 567775     2  


Q ss_pred             ----CCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCe--
Q 022635           58 ----KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDK--  131 (294)
Q Consensus        58 ----~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~--  131 (294)
                          .+|.|. ++++.|++|+|+...   ..||.+. + +++.|++|.|....+.-|.+...+.+.+|.+|.+.+...  
T Consensus       104 ~~~~~~i~i~-~~~~~i~gl~I~n~g---~~GI~v~-g-s~~~i~n~~i~~n~~~GI~l~~~~s~n~I~nn~i~~N~d~~  177 (400)
T 1ru4_A          104 VQASYGFYVT-GDYWYFKGVEVTRAG---YQGAYVI-G-SHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPK  177 (400)
T ss_dssp             CTTCCSEEEC-SSCEEEESEEEESCS---SCSEEEC-S-SSCEEESCEEESCSSCSEEECTTCCSCEEESCEEECCCCTT
T ss_pred             ccceeEEEEE-CCeEEEEeEEEEeCC---CCcEEEe-C-CCcEEEeEEEECCCceeEEEEcccCCeEEEceEEEcccCcc
Confidence                458884 899999999998753   3489997 5 677899999999888446775555588899999875321  


Q ss_pred             -------ee-EecC---------------CCCC--CCCcceEEEEEceeecCCCCCcc----------eeecC------e
Q 022635          132 -------TM-LIGA---------------DPSH--VGDRCIRVTIHHCLFDGTRQRHP----------RLRFG------K  170 (294)
Q Consensus       132 -------~~-liG~---------------~d~~--~~d~~~~vT~hhN~f~~~~~R~P----------~~r~g------~  170 (294)
                             +. ++-.               .+..  .....-.|++.+|+..++.....          -++.|      .
T Consensus       178 ~~g~~~dG~~~~~~~g~Gn~~~~~~~~~N~ddGidl~~~~~~v~i~nn~a~~Ng~~~~~~n~~~gngnGf~lgg~~~~~~  257 (400)
T 1ru4_A          178 KNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFKLGGNQAVGN  257 (400)
T ss_dssp             TTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTTCCSCCEEESCEEESTTCCCSCCTTCCCCCCSEECCCTTCCCC
T ss_pred             ccCcccceEEEEecccCCeEEECCEEeecCCCcEEEEecCCCEEEEeEEEECCccccccccccccCCCCEEEeccCCcCC
Confidence                   11 1111               0000  00011246888886554432211          02211      3


Q ss_pred             EEEEcceEeCccceeEEecCCc-eEEEEceEEEc
Q 022635          171 VHLYNNYTRNWGIYAVCASVES-QIYSQCNIYEA  203 (294)
Q Consensus       171 ~h~~NN~~~n~~~~~~~~~~~~-~v~~e~N~f~~  203 (294)
                      ..|.||+.++...+++...... .+.+++|.+..
T Consensus       258 ~~v~nn~a~~N~~~G~~~n~~~~~~~i~nNt~~~  291 (400)
T 1ru4_A          258 HRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYK  291 (400)
T ss_dssp             CEEESCEEESCSSEEEECTTCSSCCEEESCEEES
T ss_pred             EEEEeeEEECCcCcCEeecCCCCCEEEECeEEEC
Confidence            5688999888877788765443 46788885543

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=98.70  E-value=1.3e-07  Score=90.43  Aligned_cols=185  Identities=15%  Similarity=0.219  Sum_probs=125.8

Q ss_pred             cCCCeEEEEEeceEEEeCceeEecc-CeEEEeeccceE---EE------c------CC--EEEeee--------------
Q 022635           18 RREPLWIVFEVSGTIHLSSYLSVSS-YKTIDGRGQRIK---LT------G------KG--LRLKEC--------------   65 (294)
Q Consensus        18 ~~~P~~Ivf~v~G~I~l~~~l~v~s-n~TI~G~g~g~~---i~------g------~g--l~i~~~--------------   65 (294)
                      +..|.-++.--.|...|.+++.|.. ++||.|.+.+.+   |.      |      +|  +++..+              
T Consensus        53 ~A~pGdvI~L~~G~Y~l~g~ivIdkp~LtL~G~~~g~~s~~Id~~~~~~g~~~~~g~Gs~I~V~a~~~~g~a~~V~~~g~  132 (410)
T 2inu_A           53 DARPGAAIIIPPGDYDLHTQVVVDVSYLTIAGFGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGD  132 (410)
T ss_dssp             TSCCCEEEECCSEEEEECSCEEECCTTEEEECSCCCCCCHHHHHTSCCTTCSCCSCCSEEEEECCCTTSCEEEEECCCSS
T ss_pred             cCCCCCEEEECCCeeccCCcEEEecCcEEEEecCCCcceeEEecccccCcccccCCCCcEEEEeccccccceeEEeeccC
Confidence            3567777777899999999999985 599999976655   66      3      22  455433              


Q ss_pred             ---ccEEEEeeEEEcC-----C---CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCee-e
Q 022635           66 ---EHVIICNLEFEGG-----R---GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT-M  133 (294)
Q Consensus        66 ---~NVIirnl~i~~~-----~---~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~-~  133 (294)
                         ++|.|++|.|++.     .   ....-||.++..++++.|.+|.|.....| |.+ +++++++|.+|.+.+..-+ .
T Consensus       133 ~r~s~V~~~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~~~fG-I~l-~~a~~~~I~~N~I~e~GNgI~  210 (410)
T 2inu_A          133 PRLSGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYLEHA-LIV-RGADALRVNDNMIAECGNCVE  210 (410)
T ss_dssp             SCEECCEEESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEESCSEE-EEE-TTEESCEEESCEEESSSEEEE
T ss_pred             cccCCcEECCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEecccEE-EEE-ccCCCcEEECCEEEecCCcee
Confidence               7888888888876     2   24567888875588899999999999999 677 5899999999999964433 5


Q ss_pred             EecCC-CC--------CCCCc-ceEEEEEc-eeecCCCC-Ccceee--c---CeEEEEcceEeCccceeEEecC--CceE
Q 022635          134 LIGAD-PS--------HVGDR-CIRVTIHH-CLFDGTRQ-RHPRLR--F---GKVHLYNNYTRNWGIYAVCASV--ESQI  194 (294)
Q Consensus       134 liG~~-d~--------~~~d~-~~~vT~hh-N~f~~~~~-R~P~~r--~---g~~h~~NN~~~n~~~~~~~~~~--~~~v  194 (294)
                      |||.+ ..        ..+++ ...+..++ +++.++.. +.=|..  +   ....+.+|.+.+.. |++..-.  ....
T Consensus       211 L~G~~~~~~I~~N~i~~~~dG~gIyl~ns~~~~I~~N~i~~~~R~gIh~m~s~~~~i~~N~f~~~~-~Gi~~M~s~~~~n  289 (410)
T 2inu_A          211 LTGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTGCNRCSVTSNRLQGFY-PGMLRLLNGCKEN  289 (410)
T ss_dssp             ECSCEESCEEESCEEECCTTSEEEEEESEESCEEESCEECSCSSEEEEEESCBSCEEESCEEEESS-SCSEEEESSCBSC
T ss_pred             eccccccceEecceeeecCCCCEEEEEeCCCCEEECCCcccCcceEEEEEccCCCEEECCEEecce-eEEEEEEcCCCCC
Confidence            66722 11        12333 24555444 67777643 333321  1   23578888877654 3443222  3477


Q ss_pred             EEEceEEEcCC
Q 022635          195 YSQCNIYEAGQ  205 (294)
Q Consensus       195 ~~e~N~f~~g~  205 (294)
                      ++++|.|....
T Consensus       290 ~v~~N~f~~~~  300 (410)
T 2inu_A          290 LITANHIRRTN  300 (410)
T ss_dssp             EEESCEEEEEC
T ss_pred             EEECCEEeccC
Confidence            88999998643

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=98.61  E-value=2.3e-06  Score=84.47  Aligned_cols=116  Identities=23%  Similarity=0.310  Sum_probs=82.8

Q ss_pred             CchHHHHhhcCCCeEEEEEeceEEEeCceeEe------ccCeEEEeec-cceEEEcCC-EEEeeeccEEEEeeEEEcCCC
Q 022635            9 PGSLREGCRRREPLWIVFEVSGTIHLSSYLSV------SSYKTIDGRG-QRIKLTGKG-LRLKECEHVIICNLEFEGGRG   80 (294)
Q Consensus         9 ~GsLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v------~sn~TI~G~g-~g~~i~g~g-l~i~~~~NVIirnl~i~~~~~   80 (294)
                      +.+|++|+++..|...++--.|+.+- ..|.+      ...+||.|.+ .+++|.|.. |.|. +++|.|++|+|+++..
T Consensus        31 ~~~Lq~Ai~~A~pGDtI~L~~GtY~~-~~i~i~~sGt~~~pItl~~~~~~~~vi~G~~~l~i~-g~~v~i~GL~i~~~~~  108 (506)
T 1dbg_A           31 NETLYQVVKEVKPGGLVQIADGTYKD-VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELR-GEHLILEGIWFKDGNR  108 (506)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSEEEET-CEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEEC-SSSEEEESCEEEEECC
T ss_pred             HHHHHHHHHhCCCCCEEEECCCEEec-ceEEEecCCcCCCCEEEECCCCCccEEeCCceEEEE-cCCEEEECeEEECCCc
Confidence            56899999998887777768899972 25777      4679999983 467888764 7776 7999999999997642


Q ss_pred             -------CCCCceEEcCCCceEEEEceeecCCCCCe-eEee-------eCCccEEEEccEEee
Q 022635           81 -------HDVDGIQIKPNSRHIWIDRCSLRDYDDGL-IDIT-------RQSTDITVSRCYFTQ  128 (294)
Q Consensus        81 -------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~-id~~-------~~s~~vTiS~~~f~~  128 (294)
                             .+..++.+.  ++++.|.+|.|....++. +.+.       -.+.+.+|.+|.|..
T Consensus       109 ~~~~~~~~~~~~iav~--G~~~~I~nn~I~~~~~gd~i~i~~~~~~~~l~g~~n~I~~N~I~G  169 (506)
T 1dbg_A          109 AIQAWKSHGPGLVAIY--GSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTD  169 (506)
T ss_dssp             CTTTCCTTSCCSEEEC--SSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEEC
T ss_pred             ceeeeecccccceEEe--cCCeEEEeeEEEcCCCCceeeEeecccceeeeccccEEECcEEEC
Confidence                   123456664  477889999998776651 1121       124556788888875

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.58  E-value=6.1e-06  Score=79.66  Aligned_cols=99  Identities=14%  Similarity=0.340  Sum_probs=67.2

Q ss_pred             EeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCC
Q 022635           62 LKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH  141 (294)
Q Consensus        62 i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~  141 (294)
                      +..++||.|+|++|+.+.....|||.+. . ++|+|.+|.+..+.| ++.++.++.||+|++|.+.... +.-||+....
T Consensus       155 i~~~~nv~I~n~~I~~~d~~ntDGidi~-~-~nV~I~n~~i~~gDD-~Iai~s~~~nI~I~n~~~~~~~-GisIGS~g~~  230 (422)
T 1rmg_A          155 MDTCSDGEVYNMAIRGGNEGGLDGIDVW-G-SNIWVHDVEVTNKDE-CVTVKSPANNILVESIYCNWSG-GCAMGSLGAD  230 (422)
T ss_dssp             EEEEEEEEEEEEEEECCSSTTCCSEEEE-E-EEEEEEEEEEESSSE-EEEEEEEEEEEEEEEEEEESSS-EEEEEEECTT
T ss_pred             EeCcCCEEEEeEEEECCCCCCCccEeec-C-CeEEEEeeEEeCCCC-eEEeCCCCcCEEEEeEEEcCCc-ceeecccCCC
Confidence            3345555555555555322358999997 6 999999999986654 5888777999999999987543 7777764311


Q ss_pred             CCCcceEEEEEceeecCCCCCcceee
Q 022635          142 VGDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       142 ~~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                        ....+|++.+|.+.++. +.=+++
T Consensus       231 --~~v~nV~v~n~~~~~~~-~Gi~Ik  253 (422)
T 1rmg_A          231 --TDVTDIVYRNVYTWSSN-QMYMIK  253 (422)
T ss_dssp             --EEEEEEEEEEEEEESSS-CSEEEE
T ss_pred             --CcEEEEEEEeEEEeccc-eEEEEE
Confidence              12347999999888763 333443

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.55  E-value=1.1e-06  Score=83.51  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=86.6

Q ss_pred             cCeEEEeeccceEEEcC---CEEEeeeccEEEEeeEEEcCC-CCCCCceEEcCCCceEEEEceeecCCCCCeeEeee---
Q 022635           42 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGGR-GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR---  114 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~---gl~i~~~~NVIirnl~i~~~~-~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~---  114 (294)
                      .|++|.|.    +|.+.   .+.+..++||.|+|++|+... ....|||.+. .+++|+|++|.|..+.|. +.++.   
T Consensus       160 ~nv~I~~i----ti~nsp~~~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~-~s~nV~I~n~~i~~gDDc-Iaiks~~~  233 (376)
T 1bhe_A          160 KNFTLYNV----SLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDDN-VAIKAYKG  233 (376)
T ss_dssp             EEEEEEEE----EEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEE-SCEEEEEESCEEECSSCS-EEEEECTT
T ss_pred             eEEEEEeE----EEECCCcEEEEEeCCCcEEEEeEEEECCCCCCCCceEeec-CCceEEEEeCEEecCCCe-EEEcccCC
Confidence            35566553    56553   477778999999999999864 3568999997 899999999999877665 78873   


Q ss_pred             --CCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee
Q 022635          115 --QSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       115 --~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                        +++||+|++|.|.. ..++-||+..+    ...+|++.+|.|.++. |.-|++
T Consensus       234 ~~~s~nI~I~n~~~~~-ghGisiGSe~~----~v~nV~v~n~~~~~t~-~GirIK  282 (376)
T 1bhe_A          234 RAETRNISILHNDFGT-GHGMSIGSETM----GVYNVTVDDLKMNGTT-NGLRIK  282 (376)
T ss_dssp             SCCEEEEEEEEEEECS-SSCEEEEEEES----SEEEEEEEEEEEESCS-EEEEEE
T ss_pred             CCCceEEEEEeeEEEc-cccEEeccCCc----cEeeEEEEeeEEeCCC-cEEEEE
Confidence              78999999999984 44567887432    2348999999998864 444554

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=98.55  E-value=1.2e-06  Score=82.20  Aligned_cols=104  Identities=16%  Similarity=0.315  Sum_probs=74.8

Q ss_pred             CEEEeeeccEEEEeeEEEcCC-----CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeee
Q 022635           59 GLRLKECEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTM  133 (294)
Q Consensus        59 gl~i~~~~NVIirnl~i~~~~-----~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~  133 (294)
                      ++.+..++||.|++++|....     ....|||.+. .+++|+|.+|.+..+.|. +.++ ...||+|++|.+.... +.
T Consensus       125 ~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~-~s~nV~I~n~~i~~gDDc-iaik-sg~nI~i~n~~~~~gh-Gi  200 (339)
T 2iq7_A          125 AFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVG-SSTGVYISGANVKNQDDC-LAIN-SGTNITFTGGTCSGGH-GL  200 (339)
T ss_dssp             CEEEESCEEEEEESCEEECGGGGGTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSC-CE
T ss_pred             eEEEeccCCEEEEEEEEECCccccccCCCCCcEEEc-CcceEEEEecEEecCCCE-EEEc-CCccEEEEeEEEECCc-eE
Confidence            355556778888888887642     3568999997 899999999999987776 7885 4699999999998633 57


Q ss_pred             EecCCCCCCCCcceEEEEEceeecCCCCCcceee
Q 022635          134 LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       134 liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                      -||+-.........+|++.++.|.++. +.-|++
T Consensus       201 siGSlg~~~~~~v~nV~v~n~~~~~~~-~girIk  233 (339)
T 2iq7_A          201 SIGSVGGRSDNTVKTVTISNSKIVNSD-NGVRIK  233 (339)
T ss_dssp             EEEEESSSSCCEEEEEEEEEEEEESCS-EEEEEE
T ss_pred             EECcCCcccCCCEEEEEEEeeEEECCC-cEEEEE
Confidence            777632211223358999999998753 334443

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=98.55  E-value=6.7e-06  Score=77.10  Aligned_cols=145  Identities=14%  Similarity=0.147  Sum_probs=103.2

Q ss_pred             cCeEEEeeccceEEEcCC------------------EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeec
Q 022635           42 SYKTIDGRGQRIKLTGKG------------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLR  103 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~g------------------l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s  103 (294)
                      +++||.|.|.| +|.|.|                  |.+..++||.|++|+|+...   ..+|.+. .+++|.|+++++.
T Consensus        68 ~nv~I~G~~gG-~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~giti~nsp---~~~i~i~-~~~nv~i~~~~I~  142 (339)
T 2iq7_A           68 TNININGASGH-SIDCQGSRWWDSKGSNGGKTKPKFFYAHSLKSSNIKGLNVLNTP---VQAFSIN-SATTLGVYDVIID  142 (339)
T ss_dssp             ESCEEEECTTC-EEECCGGGTCCSCGGGSSSCCCCCEEEEEEEEEEEECCEEECCS---SCCEEEE-SCEEEEEESCEEE
T ss_pred             ccEEEEcCCCC-EEECCcccccccccccCCCCCCeEEEEeeeCcEEEEEEEEEeCC---cceEEEe-ccCCEEEEEEEEE
Confidence            78888887433 676543                  78888999999999999853   4789997 8999999999997


Q ss_pred             C---------CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee-------
Q 022635          104 D---------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR-------  167 (294)
Q Consensus       104 ~---------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r-------  167 (294)
                      .         ..|| +++ ..+++|+|++|.|...+-+.-++++        .+|++.+|.+.....  =.+.       
T Consensus       143 ~~~~d~~~~~ntDG-id~-~~s~nV~I~n~~i~~gDDciaiksg--------~nI~i~n~~~~~ghG--isiGSlg~~~~  210 (339)
T 2iq7_A          143 NSAGDSAGGHNTDA-FDV-GSSTGVYISGANVKNQDDCLAINSG--------TNITFTGGTCSGGHG--LSIGSVGGRSD  210 (339)
T ss_dssp             CGGGGGTTCCSCCS-EEE-ESCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSCC--EEEEEESSSSC
T ss_pred             CCccccccCCCCCc-EEE-cCcceEEEEecEEecCCCEEEEcCC--------ccEEEEeEEEECCce--EEECcCCcccC
Confidence            4         2688 788 4799999999999987777777654        279999998876432  2221       


Q ss_pred             --cCeEEEEcceEeCccceeEEec-------CCceEEEEceEEEcC
Q 022635          168 --FGKVHLYNNYTRNWGIYAVCAS-------VESQIYSQCNIYEAG  204 (294)
Q Consensus       168 --~g~~h~~NN~~~n~~~~~~~~~-------~~~~v~~e~N~f~~g  204 (294)
                        .-.+++.|+.+.+.. +++...       .-..+.+++..++..
T Consensus       211 ~~v~nV~v~n~~~~~~~-~girIkt~~g~~G~v~nI~~~ni~~~~v  255 (339)
T 2iq7_A          211 NTVKTVTISNSKIVNSD-NGVRIKTVSGATGSVSGVTYSGITLSNI  255 (339)
T ss_dssp             CEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEeeEEECCC-cEEEEEEeCCCCeEEEEEEEEeEEccCc
Confidence              124678888887653 333221       113455555555543

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.52  E-value=8.4e-06  Score=76.47  Aligned_cols=75  Identities=19%  Similarity=0.264  Sum_probs=53.4

Q ss_pred             CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCC
Q 022635           81 HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus        81 ~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~  159 (294)
                      ...|||.+. .+++|+|.+|.+..+.|. +.++ ...||+|++|.+... .++-||+..........+|++.++.|.++
T Consensus       156 ~ntDGid~~-~s~nV~I~n~~i~~gDDc-Iaik-sg~nI~i~n~~~~~g-hGisiGS~g~~~~~~v~nV~v~n~~~~~t  230 (339)
T 1ia5_A          156 HNTDAFDIG-TSTYVTISGATVYNQDDC-VAVN-SGENIYFSGGYCSGG-HGLSIGSVGGRSDNTVKNVTFVDSTIINS  230 (339)
T ss_dssp             CSCCSEEEE-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESS-SCEEEEEECSSSCCEEEEEEEEEEEEESC
T ss_pred             CCCCcEEec-CCceEEEEeeEEEcCCCe-EEEe-CCeEEEEEeEEEECC-ceEEECcCCcccCCCEEEEEEEeeEEECC
Confidence            347889886 789999999999876665 7785 458999999998853 25777763221122235789999888774

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=98.51  E-value=2.9e-06  Score=85.57  Aligned_cols=130  Identities=18%  Similarity=0.184  Sum_probs=92.8

Q ss_pred             cCeEEEeeccceEEEcC---CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeC---
Q 022635           42 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ---  115 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~---gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~---  115 (294)
                      .|++|.|.    +|.+.   ++.+..++||.|++++|........|||.+. ++++|+|++|.|..+.| ++.++.+   
T Consensus       340 ~nv~I~gi----ti~ns~~~~i~~~~~~nv~i~~v~i~~~~~~NtDGidi~-~s~nV~I~n~~i~~gDD-~Iaiksg~~~  413 (608)
T 2uvf_A          340 ENVYLAGF----TVRNPAFHGIMNLENHNVVANGLIHQTYDANNGDGIEFG-NSQNVMVFNNFFDTGDD-CINFAAGTGE  413 (608)
T ss_dssp             EEEEEESC----EEECCSSCSEEEESCEEEEEESCEEECTTCTTCCSEEEE-SCEEEEEESCEEECSSC-SEEEECCCSG
T ss_pred             eeEEEeCc----EEecCCCCEEEEecCCCEEEeeEEEcCCCCCCCCeEEec-CCceEEEEeeEEecCCc-eEEecCCcCc
Confidence            46666654    56543   5788889999999999987555678999997 89999999999987655 4777543   


Q ss_pred             -------CccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee-----cC---eEEEEcceEeC
Q 022635          116 -------STDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR-----FG---KVHLYNNYTRN  180 (294)
Q Consensus       116 -------s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r-----~g---~~h~~NN~~~n  180 (294)
                             ++||+|++|.|....-...||+...   ....+|++.+|.|.++. +-=|++     .|   .+++.|+.+.+
T Consensus       414 ~g~~~~~s~nI~I~n~~~~~ghg~~~iGS~~~---~~v~nI~v~n~~~~~t~-~GirIKt~~g~gG~v~nI~~~ni~m~~  489 (608)
T 2uvf_A          414 KAQEQEPMKGAWLFNNYFRMGHGAIVTGSHTG---AWIEDILAENNVMYLTD-IGLRAKSTSTIGGGARNVTFRNNAMRD  489 (608)
T ss_dssp             GGGGSCCEEEEEEESCEECSSSCSEEEESCCT---TCEEEEEEESCEEESCS-EEEEEEEETTTCCEEEEEEEEEEEEEE
T ss_pred             cccccccccCEEEEeEEEeCCCCeEEEcccCC---CCEEEEEEEeEEEECCC-ceEEEeeecCCCceEECcEEEeeEEEc
Confidence                   6899999999986433345887432   22358999999998863 333332     13   24566666555


Q ss_pred             c
Q 022635          181 W  181 (294)
Q Consensus       181 ~  181 (294)
                      .
T Consensus       490 v  490 (608)
T 2uvf_A          490 L  490 (608)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=98.50  E-value=2e-06  Score=80.77  Aligned_cols=150  Identities=16%  Similarity=0.182  Sum_probs=103.9

Q ss_pred             eEeccC--eEEEeeccce---------EEEcCCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC--
Q 022635           38 LSVSSY--KTIDGRGQRI---------KLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD--  104 (294)
Q Consensus        38 l~v~sn--~TI~G~g~g~---------~i~g~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~--  104 (294)
                      +.|...  =||.|+|..-         ..+-..|.+..++||.|++|+|+...   ..+|.+. .+++|.|++|++..  
T Consensus        74 v~I~G~~gG~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~nsp---~~~i~i~-~~~nv~i~~~~I~~~~  149 (339)
T 1ia5_A           74 LTITGASGHSINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSP---VQVFSVA-GSDYLTLKDITIDNSD  149 (339)
T ss_dssp             CEEEECTTCEEECCGGGTCSSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCS---SCCEEEE-SCEEEEEESCEEECGG
T ss_pred             EEEEcCCCeEEeCCCCccccccccCCCCCCCeEEEEeecCcEEEEEEEEEcCC---cceEEEe-cccCeEEeeEEEECCc
Confidence            445432  4999997531         11223588888999999999999853   5789997 89999999999974  


Q ss_pred             -------CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee---------c
Q 022635          105 -------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR---------F  168 (294)
Q Consensus       105 -------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r---------~  168 (294)
                             ..|| +++ ..+++|+|++|.|...+-+.-++++        .+|++.+|.+.+...  =.+.         .
T Consensus       150 ~d~~~~~ntDG-id~-~~s~nV~I~n~~i~~gDDcIaiksg--------~nI~i~n~~~~~ghG--isiGS~g~~~~~~v  217 (339)
T 1ia5_A          150 GDDNGGHNTDA-FDI-GTSTYVTISGATVYNQDDCVAVNSG--------ENIYFSGGYCSGGHG--LSIGSVGGRSDNTV  217 (339)
T ss_dssp             GTTTTCCSCCS-EEE-ESCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSSC--EEEEEECSSSCCEE
T ss_pred             cccccCCCCCc-EEe-cCCceEEEEeeEEEcCCCeEEEeCC--------eEEEEEeEEEECCce--EEECcCCcccCCCE
Confidence                   2688 788 4799999999999987777777654        279999998876432  2221         1


Q ss_pred             CeEEEEcceEeCccceeEEec-------CCceEEEEceEEEcC
Q 022635          169 GKVHLYNNYTRNWGIYAVCAS-------VESQIYSQCNIYEAG  204 (294)
Q Consensus       169 g~~h~~NN~~~n~~~~~~~~~-------~~~~v~~e~N~f~~g  204 (294)
                      -.+++.|+.+.+.. +++...       .-..+.+++..++..
T Consensus       218 ~nV~v~n~~~~~t~-~girIKt~~g~~G~v~nI~~~ni~~~~v  259 (339)
T 1ia5_A          218 KNVTFVDSTIINSD-NGVRIKTNIDTTGSVSDVTYKDITLTSI  259 (339)
T ss_dssp             EEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEE
T ss_pred             EEEEEEeeEEECCC-cEEEEEEeCCCCcEEEeeEEEEEEEECc
Confidence            14678888887753 344221       113455555555543

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.44  E-value=1.5e-05  Score=74.54  Aligned_cols=91  Identities=20%  Similarity=0.359  Sum_probs=61.5

Q ss_pred             eccEEEEeeEEEcCC-----CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecCCC
Q 022635           65 CEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP  139 (294)
Q Consensus        65 ~~NVIirnl~i~~~~-----~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d  139 (294)
                      ++||.|++++|....     ....|||.+. .+++|+|.+|.+..+.|. +.++ ...||+|++|.+... .++.||+..
T Consensus       130 ~~nv~i~~~~I~~~~~d~~~~~ntDGidi~-~s~nV~I~n~~i~~gDDc-iaik-sg~nI~i~n~~~~~g-hGisiGS~g  205 (336)
T 1nhc_A          130 ATNVHLNDFTIDNSDGDDNGGHNTDGFDIS-ESTGVYISGATVKNQDDC-IAIN-SGESISFTGGTCSGG-HGLSIGSVG  205 (336)
T ss_dssp             EEEEEEESCEEECTTHHHHTCCSCCSEEEC-SCEEEEEESCEEESSSEE-EEES-SEEEEEEESCEEESS-SEEEEEEES
T ss_pred             eCCEEEEEEEEECCCcccccCCCCCcEEec-CCCeEEEEeCEEEcCCCE-EEEe-CCeEEEEEeEEEECC-cCceEccCc
Confidence            444444444444431     3457899996 889999999999877665 7785 468999999999853 357777632


Q ss_pred             CCCCCcceEEEEEceeecCC
Q 022635          140 SHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus       140 ~~~~d~~~~vT~hhN~f~~~  159 (294)
                      ........+|++.++.|.++
T Consensus       206 ~~~~~~v~nV~v~n~~~~~t  225 (336)
T 1nhc_A          206 GRDDNTVKNVTISDSTVSNS  225 (336)
T ss_dssp             SSSCCEEEEEEEEEEEEESC
T ss_pred             cccCCCEEEEEEEeeEEECC
Confidence            21112235799999988775

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.43  E-value=4.2e-06  Score=78.40  Aligned_cols=149  Identities=17%  Similarity=0.233  Sum_probs=102.6

Q ss_pred             eEeccC--eEEEeeccce---------EEEcCCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC--
Q 022635           38 LSVSSY--KTIDGRGQRI---------KLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD--  104 (294)
Q Consensus        38 l~v~sn--~TI~G~g~g~---------~i~g~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~--  104 (294)
                      +.|...  =||.|+|..-         ..+-..|.+..++||.|++|+|+....   -+|.+.  +++|.|+++++..  
T Consensus        70 v~I~G~~gG~IdG~G~~~w~~~~~~~~~~rp~~i~~~~~~nv~i~~i~i~nsp~---~~i~i~--~~nv~i~~~~I~~~~  144 (336)
T 1nhc_A           70 LTVTMADGAVIDGDGSRWWDSKGTNGGKTKPKFMYIHDVEDSTFKGINIKNTPV---QAISVQ--ATNVHLNDFTIDNSD  144 (336)
T ss_dssp             CEEEECTTCEEECCGGGTCCSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCSS---CCEEEE--EEEEEEESCEEECTT
T ss_pred             EEEEcCCCeEEECCccccccccCcCCCCCCceEEEEeeeCcEEEEEEEEEeCCc---cEEEEE--eCCEEEEEEEEECCC
Confidence            555432  4999997531         112234888889999999999998643   468885  8999999999975  


Q ss_pred             -------CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee---------c
Q 022635          105 -------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR---------F  168 (294)
Q Consensus       105 -------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r---------~  168 (294)
                             ..|| +|+ ..+++|+|++|.|...+-+.-++++        .+|++.+|.+.....  =.+.         .
T Consensus       145 ~d~~~~~ntDG-idi-~~s~nV~I~n~~i~~gDDciaiksg--------~nI~i~n~~~~~ghG--isiGS~g~~~~~~v  212 (336)
T 1nhc_A          145 GDDNGGHNTDG-FDI-SESTGVYISGATVKNQDDCIAINSG--------ESISFTGGTCSGGHG--LSIGSVGGRDDNTV  212 (336)
T ss_dssp             HHHHTCCSCCS-EEE-CSCEEEEEESCEEESSSEEEEESSE--------EEEEEESCEEESSSE--EEEEEESSSSCCEE
T ss_pred             cccccCCCCCc-EEe-cCCCeEEEEeCEEEcCCCEEEEeCC--------eEEEEEeEEEECCcC--ceEccCccccCCCE
Confidence                   3788 899 4799999999999988888777764        279999998876432  1221         1


Q ss_pred             CeEEEEcceEeCccceeEEec-------CCceEEEEceEEEcC
Q 022635          169 GKVHLYNNYTRNWGIYAVCAS-------VESQIYSQCNIYEAG  204 (294)
Q Consensus       169 g~~h~~NN~~~n~~~~~~~~~-------~~~~v~~e~N~f~~g  204 (294)
                      -.+++.|+.+.+.. +++...       .-..+.+++..++..
T Consensus       213 ~nV~v~n~~~~~t~-~girIkt~~g~~G~v~nI~~~ni~~~~v  254 (336)
T 1nhc_A          213 KNVTISDSTVSNSA-NGVRIKTIYKETGDVSEITYSNIQLSGI  254 (336)
T ss_dssp             EEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEE
T ss_pred             EEEEEEeeEEECCC-cEEEEEEECCCCCEEeeeEEeeEEeecc
Confidence            14678888887643 344211       113455555555544

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.42  E-value=5.2e-06  Score=78.63  Aligned_cols=95  Identities=16%  Similarity=0.265  Sum_probs=65.8

Q ss_pred             EEEeeeccEEEEeeEEEcCC-----CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635           60 LRLKECEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTML  134 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~-----~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l  134 (294)
                      +.+. ++||.|+|++|....     ....|||.+. .+++|+|.+|.+..+.|. +.++ ..+||+|++|.+.... ++-
T Consensus       152 i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~-~s~nV~I~n~~i~~gDDc-Iaik-sg~nI~i~n~~~~~gh-Gis  226 (362)
T 1czf_A          152 FSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVG-NSVGVNIIKPWVHNQDDC-LAVN-SGENIWFTGGTCIGGH-GLS  226 (362)
T ss_dssp             EEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEEC-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSC-CEE
T ss_pred             EEEe-eCCEEEEEEEEECCccccccCCCCCceeec-CcceEEEEeeEEecCCCE-EEEe-CCeEEEEEEEEEeCCc-eeE
Confidence            3444 555666666665421     3468999996 899999999999977665 7885 4599999999998632 577


Q ss_pred             ecCCCCCCCCcceEEEEEceeecCC
Q 022635          135 IGADPSHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus       135 iG~~d~~~~d~~~~vT~hhN~f~~~  159 (294)
                      ||+..........+|++.++.|.++
T Consensus       227 iGS~G~~~~~~v~nV~v~n~~~~~t  251 (362)
T 1czf_A          227 IGSVGDRSNNVVKNVTIEHSTVSNS  251 (362)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEEEEE
T ss_pred             EeeccccCCCCEEEEEEEeeEEECC
Confidence            8763211112235789999888765

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=98.41  E-value=7.3e-06  Score=79.12  Aligned_cols=128  Identities=16%  Similarity=0.169  Sum_probs=89.4

Q ss_pred             eEeccCeEEEeeccce----EEEcCCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC----CCCCe
Q 022635           38 LSVSSYKTIDGRGQRI----KLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD----YDDGL  109 (294)
Q Consensus        38 l~v~sn~TI~G~g~g~----~i~g~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~----~~Dg~  109 (294)
                      +.|...-||.|+|..-    .-+-..|.+..++||.|++|+|+...   ..+|.+. .+++|.|++|++..    ..|| 
T Consensus       104 i~i~G~G~IdG~G~~~w~~~~~rp~~i~~~~~~nv~I~~iti~nsp---~~~i~i~-~~~nv~I~n~~I~~~d~~ntDG-  178 (422)
T 1rmg_A          104 FSSTSKGAVQGFGYVYHAEGTYGARILRLTDVTHFSVHDIILVDAP---AFHFTMD-TCSDGEVYNMAIRGGNEGGLDG-  178 (422)
T ss_dssp             ECSSSCCEEECCTHHHHTTTCCCCEEEEEEEEEEEEEEEEEEECCS---SCSEEEE-EEEEEEEEEEEEECCSSTTCCS-
T ss_pred             EeeccCEEEECCcchhhcCCCCCceEEEEcccceEEEECeEEECCC---ceEEEEe-CcCCEEEEeEEEECCCCCCCcc-
Confidence            4455567888886421    01223477778999999999999753   3578887 89999999999975    4788 


Q ss_pred             eEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee-------cCeEEEEcceEeCc
Q 022635          110 IDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR-------FGKVHLYNNYTRNW  181 (294)
Q Consensus       110 id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r-------~g~~h~~NN~~~n~  181 (294)
                      +++..  ++|+|++|.|...+-+.-+++.       ..+|++.+|.+....  .=++.       .-.+++.|+.+.+.
T Consensus       179 idi~~--~nV~I~n~~i~~gDD~Iai~s~-------~~nI~I~n~~~~~~~--GisIGS~g~~~~v~nV~v~n~~~~~~  246 (422)
T 1rmg_A          179 IDVWG--SNIWVHDVEVTNKDECVTVKSP-------ANNILVESIYCNWSG--GCAMGSLGADTDVTDIVYRNVYTWSS  246 (422)
T ss_dssp             EEEEE--EEEEEEEEEEESSSEEEEEEEE-------EEEEEEEEEEEESSS--EEEEEEECTTEEEEEEEEEEEEEESS
T ss_pred             EeecC--CeEEEEeeEEeCCCCeEEeCCC-------CcCEEEEeEEEcCCc--ceeecccCCCCcEEEEEEEeEEEecc
Confidence            78854  8999999999987777777652       137888888876532  11110       11457788877764

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=98.41  E-value=5e-05  Score=72.01  Aligned_cols=135  Identities=12%  Similarity=0.114  Sum_probs=94.0

Q ss_pred             CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeee
Q 022635           59 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTM  133 (294)
Q Consensus        59 gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~  133 (294)
                      .|.+..++||.|++|+|+....   -++.+. .+++|.|+++++..     ..|| ||+ ..+++|+|++|.|...+-+.
T Consensus       153 ~i~~~~~~nv~I~~iti~nsp~---~~i~~~-~~~~v~i~~v~I~~~~~~~NtDG-id~-~~s~nV~I~n~~i~~gDDcI  226 (376)
T 1bhe_A          153 LIQINKSKNFTLYNVSLINSPN---FHVVFS-DGDGFTAWKTTIKTPSTARNTDG-IDP-MSSKNITIAYSNIATGDDNV  226 (376)
T ss_dssp             SEEEESCEEEEEEEEEEECCSS---CSEEEE-SCEEEEEEEEEEECCTTCSSCCS-EEE-ESCEEEEEESCEEECSSCSE
T ss_pred             EEEEEcceEEEEEeEEEECCCc---EEEEEe-CCCcEEEEeEEEECCCCCCCCce-Eee-cCCceEEEEeCEEecCCCeE
Confidence            3667789999999999998543   467886 89999999999865     4788 788 47999999999999877766


Q ss_pred             EecCCCCCCCCcceEEEEEceeecCCCCCcceeec-------CeEEEEcceEeCccceeEEecC-------CceEEEEce
Q 022635          134 LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-------GKVHLYNNYTRNWGIYAVCASV-------ESQIYSQCN  199 (294)
Q Consensus       134 liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-------g~~h~~NN~~~n~~~~~~~~~~-------~~~v~~e~N  199 (294)
                      -+.+...  .....+|++.+|.+....+    +..       -.+.+.|+.+.+.. .++..-.       -..+.+++.
T Consensus       227 aiks~~~--~~~s~nI~I~n~~~~~ghG----isiGSe~~~v~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~ni~f~ni  299 (376)
T 1bhe_A          227 AIKAYKG--RAETRNISILHNDFGTGHG----MSIGSETMGVYNVTVDDLKMNGTT-NGLRIKSDKSAAGVVNGVRYSNV  299 (376)
T ss_dssp             EEEECTT--SCCEEEEEEEEEEECSSSC----EEEEEEESSEEEEEEEEEEEESCS-EEEEEECCTTTCCEEEEEEEEEE
T ss_pred             EEcccCC--CCCceEEEEEeeEEEcccc----EEeccCCccEeeEEEEeeEEeCCC-cEEEEEEecCCCceEeeEEEEeE
Confidence            6653110  0112489999998876432    322       25688888888753 3443211       135666677


Q ss_pred             EEEcCCc
Q 022635          200 IYEAGQK  206 (294)
Q Consensus       200 ~f~~g~~  206 (294)
                      .+++...
T Consensus       300 ~~~~v~~  306 (376)
T 1bhe_A          300 VMKNVAK  306 (376)
T ss_dssp             EEESCSE
T ss_pred             EEeCCCc
Confidence            7666554

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=98.39  E-value=4.2e-06  Score=78.83  Aligned_cols=96  Identities=21%  Similarity=0.333  Sum_probs=71.9

Q ss_pred             EEEeeeccEEEEeeEEEcCC-------------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEE
Q 022635           60 LRLKECEHVIICNLEFEGGR-------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF  126 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~-------------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f  126 (294)
                      |.+..++||.|++++|....             ....|||.+. .+++|+|.+|.+..+.|. +.++ .+++|+|++|.+
T Consensus       130 i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~-~s~nV~I~n~~i~~gDDc-Iaik-sg~nI~i~n~~~  206 (349)
T 1hg8_A          130 FDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS-SSDHVTLDNNHVYNQDDC-VAVT-SGTNIVVSNMYC  206 (349)
T ss_dssp             EEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEE-SCEEEEEEEEEEECSSCS-EEES-SEEEEEEEEEEE
T ss_pred             EEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEc-cccEEEEEeeEEecCCCe-EEee-CCeEEEEEeEEE
Confidence            55567889999999998631             3568999997 899999999999976665 8886 469999999999


Q ss_pred             eecCeeeEecCCCCCCCCcceEEEEEceeecCC
Q 022635          127 TQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus       127 ~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~  159 (294)
                      ... .+.-||+..........+|++.++.|.++
T Consensus       207 ~~g-hGisiGS~G~~~~~~v~nV~v~n~~~~~~  238 (349)
T 1hg8_A          207 SGG-HGLSIGSVGGKSDNVVDGVQFLSSQVVNS  238 (349)
T ss_dssp             ESS-CCEEEEEESSSSCCEEEEEEEEEEEEEEE
T ss_pred             eCC-cceEEccccccccCCEEEEEEEEEEEECC
Confidence            852 35777764211122235899999988774

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=98.37  E-value=2.7e-06  Score=82.75  Aligned_cols=115  Identities=23%  Similarity=0.341  Sum_probs=85.5

Q ss_pred             cCeEEEeeccceEEEcC---CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeC---
Q 022635           42 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ---  115 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~---gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~---  115 (294)
                      .|++|.|.    +|...   .+.+..|+||.|++|+|... ....|||.+. .+++|+|++|.|..+ |.++.++.+   
T Consensus       199 ~nv~i~gi----ti~nsp~~~i~~~~~~nv~i~~v~I~~~-~~NtDGidi~-~s~nV~I~n~~i~~g-DDcIaiksg~~~  271 (448)
T 3jur_A          199 RNVLVEGV----KIINSPMWCIHPVLSENVIIRNIEISST-GPNNDGIDPE-SCKYMLIEKCRFDTG-DDSVVIKSGRDA  271 (448)
T ss_dssp             EEEEEESC----EEESCSSCSEEEESCEEEEEESCEEEEC-STTCCSBCCB-SCEEEEEESCEEEES-SEEEEEBCCCHH
T ss_pred             cceEEEee----EEEeCCCceEeeeccCCEEEEeEEEeec-cCCCcccccc-CCcCEEEEeeEEEeC-CCcEEeccCccc
Confidence            45666654    56543   47777899999999999975 4568999997 899999999999975 555888755   


Q ss_pred             --------CccEEEEccEEee--cCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee
Q 022635          116 --------STDITVSRCYFTQ--HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       116 --------s~~vTiS~~~f~~--h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                              +.+|+|++|.+..  ..-+.-||+..+   ....+|++.+|.|.++ .|.-|++
T Consensus       272 dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~---~~v~nV~v~n~~~~~t-~~GirIK  329 (448)
T 3jur_A          272 DGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMS---GGVRNVVARNNVYMNV-ERALRLK  329 (448)
T ss_dssp             HHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCT---TCEEEEEEESCEEESC-SEEEEEE
T ss_pred             cccccCCCceeEEEEEeEEecCCCcceEEECCccc---CcEEEEEEEEEEEecc-cceEEEE
Confidence                    7899999999932  233777887632   2235899999999654 3444443

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=98.22  E-value=2.4e-05  Score=73.99  Aligned_cols=122  Identities=11%  Similarity=0.157  Sum_probs=90.7

Q ss_pred             cCeEEEeeccceEEEcCC-----------------EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC
Q 022635           42 SYKTIDGRGQRIKLTGKG-----------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD  104 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~g-----------------l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~  104 (294)
                      .|++|.|.+. .+|.|.|                 |.+..++|+.|++|+++....   -+|.+.  +++|.|++|++..
T Consensus        95 ~nv~I~G~~~-g~IdG~G~~~w~~~~~~~~~rP~~i~~~~~~nv~i~~iti~nsp~---~~i~i~--~~nv~i~~~~I~~  168 (362)
T 1czf_A           95 EHITVTGASG-HLINCDGARWWDGKGTSGKKKPKFFYAHGLDSSSITGLNIKNTPL---MAFSVQ--ANDITFTDVTINN  168 (362)
T ss_dssp             ESCEEEECTT-CEEECCGGGTCCSCTTSSSCCCCCEEEEEEETEEEESCEEECCSS---CCEEEE--CSSEEEESCEEEC
T ss_pred             ccEEEEcCCC-cEEECCCchhhcccCCCCCCCCeEEEEeecccEEEEEEEEecCCc---cEEEEe--eCCEEEEEEEEEC
Confidence            6788887522 2566543                 788889999999999998644   468884  9999999999964


Q ss_pred             ---------CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee------cC
Q 022635          105 ---------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR------FG  169 (294)
Q Consensus       105 ---------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r------~g  169 (294)
                               ..|| +|+ ..+++|+|++|.|...+-+.-++++        .+|++.+|.+.....  =.+.      .+
T Consensus       169 ~~~d~~~~~NtDG-idi-~~s~nV~I~n~~i~~gDDcIaiksg--------~nI~i~n~~~~~ghG--isiGS~G~~~~~  236 (362)
T 1czf_A          169 ADGDTQGGHNTDA-FDV-GNSVGVNIIKPWVHNQDDCLAVNSG--------ENIWFTGGTCIGGHG--LSIGSVGDRSNN  236 (362)
T ss_dssp             GGGGTTTCCSCCS-EEE-CSCEEEEEESCEEECSSCSEEESSE--------EEEEEESCEEESSCC--EEEEEECSSSCC
T ss_pred             CccccccCCCCCc-eee-cCcceEEEEeeEEecCCCEEEEeCC--------eEEEEEEEEEeCCce--eEEeeccccCCC
Confidence                     2688 798 4799999999999988888888764        279999998876432  2221      11


Q ss_pred             ---eEEEEcceEeCc
Q 022635          170 ---KVHLYNNYTRNW  181 (294)
Q Consensus       170 ---~~h~~NN~~~n~  181 (294)
                         .+++.|+.+.+.
T Consensus       237 ~v~nV~v~n~~~~~t  251 (362)
T 1czf_A          237 VVKNVTIEHSTVSNS  251 (362)
T ss_dssp             EEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEeeEEECC
Confidence               356777777654

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=98.15  E-value=9.3e-05  Score=68.91  Aligned_cols=118  Identities=15%  Similarity=0.280  Sum_probs=85.4

Q ss_pred             hHHHHhhcCCC----eEEEEEeceEEEeCceeEec---cCeEEEeecc-ceEEEcC-------------CEEEeeeccEE
Q 022635           11 SLREGCRRREP----LWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ-RIKLTGK-------------GLRLKECEHVI   69 (294)
Q Consensus        11 sLr~a~~~~~P----~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~-g~~i~g~-------------gl~i~~~~NVI   69 (294)
                      ++++||++..+    +.+|+--.|+.+  +.|.|.   +++||.|.|. ...|.+.             .|.+. +++++
T Consensus        21 TIq~AI~aap~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~-a~~f~   97 (319)
T 1gq8_A           21 TVSEAVAAAPEDSKTRYVIRIKAGVYR--ENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAV-GAGFL   97 (319)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEEC-STTCE
T ss_pred             CHHHHHHhccccCCceEEEEEcCCeEe--eeeeccCCCccEEEEEcCCCccEEEecccccCCCCccceEEEEEE-CCCEE
Confidence            89999987433    345555789998  788885   6899999974 4455542             37776 99999


Q ss_pred             EEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecC
Q 022635           70 ICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA  137 (294)
Q Consensus        70 irnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~  137 (294)
                      ++||+|++..+   ...-||.+  .++++.+.+|.|....|.+..-   .....+.+|.|..+ --.++|.
T Consensus        98 ~~nlt~~Nt~g~~~~qAvAl~v--~~d~~~f~~c~f~g~QDTLy~~---~~r~~~~~c~I~G~-vDFIfG~  162 (319)
T 1gq8_A           98 ARDITFQNTAGAAKHQAVALRV--GSDLSAFYRCDILAYQDSLYVH---SNRQFFINCFIAGT-VDFIFGN  162 (319)
T ss_dssp             EEEEEEEECCCGGGCCCCSEEE--CCTTEEEEEEEEECSTTCEEEC---SSEEEEESCEEEES-SSCEEES
T ss_pred             EEEeEeEccCCCcCCceEEEEe--cCCcEEEEEeEECccceeeeec---CccEEEEecEEEee-eeEEecC
Confidence            99999998643   34567777  4789999999999999986542   23357788888742 2244554

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=98.15  E-value=3.5e-05  Score=75.29  Aligned_cols=114  Identities=13%  Similarity=0.090  Sum_probs=75.1

Q ss_pred             CeEEEeeccceEEEcCC--------EEEeeeccEEEEeeEEEcCCCC---------CCCceEEcCCCceEEEEceeecCC
Q 022635           43 YKTIDGRGQRIKLTGKG--------LRLKECEHVIICNLEFEGGRGH---------DVDGIQIKPNSRHIWIDRCSLRDY  105 (294)
Q Consensus        43 n~TI~G~g~g~~i~g~g--------l~i~~~~NVIirnl~i~~~~~~---------~~D~i~i~~~~~~vwIDHcs~s~~  105 (294)
                      +++|.|.|...+|.|.|        |.+..++|+.|++|+|+..+.-         +.|||.+  .+++|+|.+|.+...
T Consensus       110 nItI~G~Gg~~~iDG~G~~~~rp~~i~~~~~~Nv~I~gIti~n~w~ih~s~~V~i~NtDGi~i--~s~nV~I~n~~I~~g  187 (464)
T 1h80_A          110 NFSFQGLGNGFLVDFKDSRDKNLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLH--WSRNGIIERIKQNNA  187 (464)
T ss_dssp             EEEEEECTTCEEEECTTCSCCBEEEEEECSEEEEEEEEEEEECCSCBSCSEEECEEEETTEEE--EEEEEEEEEEEEESC
T ss_pred             ceEEECcCcceEEeCCCCCCCCceEEEEEeeccEEEeeeEEeccceEeeceeeeeecCCCcee--eccCEEEeceEEecC
Confidence            34555554333455442        5677899999999999975531         2477777  489999999999987


Q ss_pred             CCCe--eEeeeCCccEEEEccEEeecCeeeEecCCC----CCCCCcceEEEEEceeecCCC
Q 022635          106 DDGL--IDITRQSTDITVSRCYFTQHDKTMLIGADP----SHVGDRCIRVTIHHCLFDGTR  160 (294)
Q Consensus       106 ~Dg~--id~~~~s~~vTiS~~~f~~h~~~~liG~~d----~~~~d~~~~vT~hhN~f~~~~  160 (294)
                      .|+.  .+. ..+.+|+|++|.|.. ..+.-+...+    ........+|+|.++.+.+..
T Consensus       188 ddgiGs~~~-~~~~NV~V~n~~~~g-g~GIrIktg~d~IG~~~~g~v~NI~~~Ni~~~nv~  246 (464)
T 1h80_A          188 LFGYGLIQT-YGADNILFRNLHSEG-GIALRMETDNLLMKNYKQGGIRNIFADNIRCSKGL  246 (464)
T ss_dssp             CTTCEEEEE-SEEEEEEEEEEEEES-SEEEEEECCCHHHHHHTCCEEEEEEEEEEEEESSS
T ss_pred             CCeEEeccc-CCEeEEEEEeeEEEC-CCEEEEEeCCceeccCCCCcEEEEEEEeEEEECCc
Confidence            6643  333 578999999999987 4343332221    000111247888888887754

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=98.14  E-value=8.8e-05  Score=69.03  Aligned_cols=110  Identities=20%  Similarity=0.321  Sum_probs=81.8

Q ss_pred             hHHHHhhcCCC----eEEEEEeceEEEeCceeEec---cCeEEEeecc-ceEEEcC-------------CEEEeeeccEE
Q 022635           11 SLREGCRRREP----LWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQ-RIKLTGK-------------GLRLKECEHVI   69 (294)
Q Consensus        11 sLr~a~~~~~P----~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~-g~~i~g~-------------gl~i~~~~NVI   69 (294)
                      ++++||++..+    |.+++--.|+.+  +.|.|.   +++||.|.|. ...|.+.             .|.+. +++++
T Consensus        17 TIq~AI~aap~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~t~~satv~v~-a~~f~   93 (317)
T 1xg2_A           17 TLAEAVAAAPDKSKTRYVIYVKRGTYK--ENVEVASNKMNLMIVGDGMYATTITGSLNVVDGSTTFRSATLAAV-GQGFI   93 (317)
T ss_dssp             SHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCCSGGGCSEEEC-STTCE
T ss_pred             cHHHHHhhcccCCCceEEEEEcCCEEe--eeeecCCCCCcEEEEEcCCCCcEEEecccccCCCcccceeEEEEE-CCCEE
Confidence            79999987433    345555789998  788885   6899999974 4556543             37775 99999


Q ss_pred             EEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee
Q 022635           70 ICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  128 (294)
Q Consensus        70 irnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~  128 (294)
                      ++||+|++..+   ...-||.+  .++++.+.+|.|....|.+..-   ...-.+.+|.|..
T Consensus        94 ~~~lt~~Nt~g~~~~qAvAl~v--~~d~~~f~~c~f~g~QDTLy~~---~~r~~~~~c~I~G  150 (317)
T 1xg2_A           94 LQDICIQNTAGPAKDQAVALRV--GADMSVINRCRIDAYQDTLYAH---SQRQFYRDSYVTG  150 (317)
T ss_dssp             EESCEEEECCCGGGCCCCSEEE--CCTTEEEESCEEECSTTCEEEC---SSEEEEESCEEEE
T ss_pred             EEEeEEecccCCccCceEEEEE--eCCcEEEEEeEeCccccceeec---CccEEEEeeEEEe
Confidence            99999998643   34567777  4788999999999999986542   2334778888763

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=98.08  E-value=4.2e-05  Score=71.65  Aligned_cols=99  Identities=17%  Similarity=0.332  Sum_probs=73.6

Q ss_pred             EEEeeecc-EEEEeeEEEcCC------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCee
Q 022635           60 LRLKECEH-VIICNLEFEGGR------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT  132 (294)
Q Consensus        60 l~i~~~~N-VIirnl~i~~~~------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~  132 (294)
                      +.+..++| |.|++|+|+...      ....|||.+  .++||+|.+|.+..+.| ++.++. ..||+|++|.+... .+
T Consensus       122 i~i~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi--~s~nV~I~n~~i~~gDD-cIaiks-g~nI~i~n~~~~~g-hG  196 (335)
T 1k5c_A          122 ISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV--SANNVTIQNCIVKNQDD-CIAIND-GNNIRFENNQCSGG-HG  196 (335)
T ss_dssp             EEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE--ECSSEEEESCEEESSSC-SEEEEE-EEEEEEESCEEESS-CC
T ss_pred             EEEEccCCeEEEEEEEEECCCCcccccCCCCCeEcc--cCCeEEEEeeEEEcCCC-EEEeeC-CeeEEEEEEEEECC-cc
Confidence            56667888 999999999752      557899999  58999999999987655 488875 49999999999863 35


Q ss_pred             eEecCCCCCCCCcceEEEEEceeecCCCCCccee
Q 022635          133 MLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL  166 (294)
Q Consensus       133 ~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~  166 (294)
                      .-||+...  .....+|++.++.+.++. +.-|+
T Consensus       197 isIGS~g~--~~~v~nV~v~n~~~~~t~-~girI  227 (335)
T 1k5c_A          197 ISIGSIAT--GKHVSNVVIKGNTVTRSM-YGVRI  227 (335)
T ss_dssp             EEEEEECT--TCEEEEEEEESCEEEEEE-EEEEE
T ss_pred             CeEeeccC--CCCEEEEEEEeeEEECCC-ceEEE
Confidence            77776532  112347999998887643 33444

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=98.08  E-value=0.00026  Score=66.95  Aligned_cols=140  Identities=19%  Similarity=0.259  Sum_probs=91.0

Q ss_pred             CCceEEcCCCceEEEEceeecC-------CCCCeeEeeeCCccEEEEccEEeecCeeeE-ecCCCCCCCCcceEEEEEce
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRD-------YDDGLIDITRQSTDITVSRCYFTQHDKTML-IGADPSHVGDRCIRVTIHHC  154 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~-------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l-iG~~d~~~~d~~~~vT~hhN  154 (294)
                      +.+|.|...++||+|.+..|..       ..|+ |.+. ++++|-|-+|.|......++ .+...      ...||+.+|
T Consensus       123 G~gl~i~~~a~NVIIrnl~i~~~~~~~~~~~Da-I~i~-~s~nvwIDHcs~s~~~d~~~~~~~~~------s~~vTISnn  194 (359)
T 1qcx_A          123 GKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDA-ITVD-DSDLVWIDHVTTARIGRQHIVLGTSA------DNRVTISYS  194 (359)
T ss_dssp             SCCEEEETTCCCEEEESCEEEEECTTEETSCCS-EEEE-SCCCEEEESCEEEEESSCSEEECSSC------CEEEEEESC
T ss_pred             cceEEEecCCCCEEEeCcEEEecCCcccccCce-eEec-CCceEEEEeeEeeccCcCceeecccc------cccEEEECc
Confidence            3468884368999999999974       4466 6674 79999999999986444433 23211      138999999


Q ss_pred             eecCCCC-------Cc-cee-ecC---eEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccceeeeehhccccccc
Q 022635          155 LFDGTRQ-------RH-PRL-RFG---KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLE  222 (294)
Q Consensus       155 ~f~~~~~-------R~-P~~-r~g---~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~  222 (294)
                      +|.+...       .. ... -.|   .+.+.+|+|.+...+.-..+.+..+.+.||||.+-...   .+        ..
T Consensus       195 ~f~~~~~~s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~~~~R~Pr~r~~~~~hv~NN~~~n~~~~---a~--------~~  263 (359)
T 1qcx_A          195 LIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGH---AF--------EI  263 (359)
T ss_dssp             EEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEEEEE---EE--------EE
T ss_pred             EecCCccccccCcccccceeEEecCCCCeehcccEeccCcccCceecCCceEEEEccEEECccCe---EE--------ec
Confidence            9985432       11 111 112   57899999988765543344445788999999863211   00        11


Q ss_pred             CCcceEEEeCCeEeeCcee
Q 022635          223 AKSGLIRSEGDIFLKGAQA  241 (294)
Q Consensus       223 ~~~G~~~~~gn~~~~g~~~  241 (294)
                      ...+.+..++|+|.++..+
T Consensus       264 ~~~~~i~~e~N~F~~~~~~  282 (359)
T 1qcx_A          264 GTGGYVLAEGNVFQDVNVV  282 (359)
T ss_dssp             CTTEEEEEESCEEEEEEEE
T ss_pred             CCCceEEEEeeEEECCCcc
Confidence            2344677889999887644

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=98.05  E-value=0.00012  Score=68.88  Aligned_cols=168  Identities=15%  Similarity=0.104  Sum_probs=105.7

Q ss_pred             ccCeEEEeeccceEEEcC-CEEEeeeccEEEEeeEEEcCCC-----CCCCceEEcCCCceEEEEceeecCC---------
Q 022635           41 SSYKTIDGRGQRIKLTGK-GLRLKECEHVIICNLEFEGGRG-----HDVDGIQIKPNSRHIWIDRCSLRDY---------  105 (294)
Q Consensus        41 ~sn~TI~G~g~g~~i~g~-gl~i~~~~NVIirnl~i~~~~~-----~~~D~i~i~~~~~~vwIDHcs~s~~---------  105 (294)
                      ...++|+..+.+ +|... .|.|  .+|+     +|.+-..     .++-||.|. .++||+|.++.|.++         
T Consensus        65 ~~P~~Ivf~~~g-~I~l~~~l~V--~sn~-----TI~G~ga~~~i~G~G~gi~i~-~a~NVIIrnl~i~~~~~~~~~~I~  135 (346)
T 1pxz_A           65 EKALWIIFSQNM-NIKLKMPLYV--AGHK-----TIDGRGADVHLGNGGPCLFMR-KVSHVILHSLHIHGCNTSVLGDVL  135 (346)
T ss_dssp             SSCEEEEESSCE-EECCSSCEEC--CSSE-----EEECTTSCEEEETTSCCEEEE-SCEEEEEESCEEECCCCCCSEEEE
T ss_pred             CCCeEEEEcCCc-EEecCccEEe--cCCe-----EEEccCCceEEeCCcceEEEE-ccCCEEEEeeEEEeeccCCCceEE
Confidence            356788776543 45432 4655  3454     4443221     123578887 899999999999743         


Q ss_pred             --------------CCCeeEeeeCCccEEEEccEEeecCeeeE-e-cCCCCCCCCcceEEEEEceeecCCCCCcceee--
Q 022635          106 --------------DDGLIDITRQSTDITVSRCYFTQHDKTML-I-GADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR--  167 (294)
Q Consensus       106 --------------~Dg~id~~~~s~~vTiS~~~f~~h~~~~l-i-G~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r--  167 (294)
                                    .|+ |.+. ++++|-|-+|.|+...-+.+ + ..+        ..||+.+|+|.+.. ..-.+.  
T Consensus       136 ~~~~~~~g~~~~~~~Da-I~i~-~s~nVwIDHcs~s~~~Dg~id~~~~s--------~~vTISnn~f~~H~-k~~l~G~s  204 (346)
T 1pxz_A          136 VSESIGVEPVHAQDGDA-ITMR-NVTNAWIDHNSLSDCSDGLIDVTLGS--------TGITISNNHFFNHH-KVMLLGHD  204 (346)
T ss_dssp             EETTTEEEEECCCCCCS-EEEE-SCEEEEEESCEEECCSSEEEEEESSC--------EEEEEESCEEESEE-EEEEESCC
T ss_pred             eccCcccccccCCCCCE-EEEe-cCceEEEEeeEEecCCCCcEeeccCc--------ceEEEEeeEEecCC-ceeEECCC
Confidence                          355 6774 78999999999997655543 2 222        27999999998641 111121  


Q ss_pred             -------cCeEEEEcceE-eCccceeEEecCCceEEEEceEEEcCCccceeeeehhcccccccCCcceEEEeCCeEeeCc
Q 022635          168 -------FGKVHLYNNYT-RNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGA  239 (294)
Q Consensus       168 -------~g~~h~~NN~~-~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~~g~  239 (294)
                             ...+.+.+|+| .+...+.-..+ ...+.+.||||..-....   +        .......+..++|+|..+.
T Consensus       205 d~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r-~g~~hv~NN~~~~~~~~~---i--------~~~~~~~i~~egN~F~~~~  272 (346)
T 1pxz_A          205 DTYDDDKSMKVTVAFNQFGPNAGQRMPRAR-YGLVHVANNNYDPWNIYA---I--------GGSSNPTILSEGNSFTAPS  272 (346)
T ss_dssp             SSCGGGGGCEEEEESCEECSSEEECTTEEE-SSEEEEESCEECCCSSCS---E--------EEESCCEEEEESCEEECCS
T ss_pred             CccccCCceEEEEEeeEEeCCccccCccEe-cceEEEEeeEEEcccceE---E--------eccCCceEEEECCEEECCC
Confidence                   12678999999 77655433333 368899999998632111   0        0122346778899999875


Q ss_pred             e
Q 022635          240 Q  240 (294)
Q Consensus       240 ~  240 (294)
                      .
T Consensus       273 ~  273 (346)
T 1pxz_A          273 E  273 (346)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=98.04  E-value=9.4e-05  Score=69.56  Aligned_cols=106  Identities=17%  Similarity=0.227  Sum_probs=79.9

Q ss_pred             EEE-e-eeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC-----------------CCCCeeEeeeCCccEE
Q 022635           60 LRL-K-ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDIT  120 (294)
Q Consensus        60 l~i-~-~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~-----------------~~Dg~id~~~~s~~vT  120 (294)
                      |.+ . .++||.|++|+|+...   ..+|.+. .+++|.|+++++..                 ..|| +|+ ..+++|+
T Consensus       105 i~~~~~~~~nv~I~giti~nsp---~~~i~i~-~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDG-id~-~~s~nV~  178 (349)
T 1hg8_A          105 FIVVQKTTGNSKITNLNIQNWP---VHCFDIT-GSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDG-FDI-SSSDHVT  178 (349)
T ss_dssp             EEEEEEEESSEEEESCEEECCS---SEEEEEE-SCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCS-EEE-ESCEEEE
T ss_pred             EEEeecCcCcEEEEEEEEEcCC---CceEEEe-ccCCEEEEEEEEECCCCccccccccccccCCCCCe-EEE-ccccEEE
Confidence            567 6 6779999999999853   4678897 89999999999964                 2677 788 4799999


Q ss_pred             EEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee------cC---eEEEEcceEeCc
Q 022635          121 VSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR------FG---KVHLYNNYTRNW  181 (294)
Q Consensus       121 iS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r------~g---~~h~~NN~~~n~  181 (294)
                      |++|.|...+-+.-++++        .+|++.+|.+.....  =.+.      .+   .+++.|+.+.+.
T Consensus       179 I~n~~i~~gDDcIaiksg--------~nI~i~n~~~~~ghG--isiGS~G~~~~~~v~nV~v~n~~~~~~  238 (349)
T 1hg8_A          179 LDNNHVYNQDDCVAVTSG--------TNIVVSNMYCSGGHG--LSIGSVGGKSDNVVDGVQFLSSQVVNS  238 (349)
T ss_dssp             EEEEEEECSSCSEEESSE--------EEEEEEEEEEESSCC--EEEEEESSSSCCEEEEEEEEEEEEEEE
T ss_pred             EEeeEEecCCCeEEeeCC--------eEEEEEeEEEeCCcc--eEEccccccccCCEEEEEEEEEEEECC
Confidence            999999987777777654        279999998875432  2220      11   357788877764

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=98.03  E-value=0.0003  Score=66.03  Aligned_cols=122  Identities=9%  Similarity=0.208  Sum_probs=85.4

Q ss_pred             chHHHHhhcCCC---eEEEEEeceEEEeCceeEec-cCeEEEeecc-ceEEEcC-------------------CEEEeee
Q 022635           10 GSLREGCRRREP---LWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQ-RIKLTGK-------------------GLRLKEC   65 (294)
Q Consensus        10 GsLr~a~~~~~P---~~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~-g~~i~g~-------------------gl~i~~~   65 (294)
                      -++++||++..+   +.+|+-..|+.+  +.|.|. +++||.|.|. ...|.+.                   .|.+. +
T Consensus        19 ~TIq~Ai~aap~~~~~~~I~I~~G~Y~--E~V~I~k~~Itl~G~g~~~tiI~~~~~~~~~~~~g~~~gT~~satv~v~-a   95 (342)
T 2nsp_A           19 KTIADAIASAPAGSTPFVILIKNGVYN--ERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITIS-A   95 (342)
T ss_dssp             SSHHHHHHTSCSSSSCEEEEECSEEEE--CCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEEC-S
T ss_pred             chHHHHHHhcccCCCcEEEEEeCCEEE--EEEEEecCeEEEEecCCCCeEEEecccccccccccCcccccceeEEEEE-C
Confidence            479999987433   345555789998  778886 6899999974 4445432                   36776 8


Q ss_pred             ccEEEEeeEEEcCC-----------------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee
Q 022635           66 EHVIICNLEFEGGR-----------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  128 (294)
Q Consensus        66 ~NVIirnl~i~~~~-----------------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~  128 (294)
                      ++++++||+|++..                 ....-||.|.-.++++.+.+|.|....|.+..-   ....-+.+|.|..
T Consensus        96 ~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G~QDTLy~~---~gr~~~~~c~I~G  172 (342)
T 2nsp_A           96 KDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVS---GGRSFFSDCRISG  172 (342)
T ss_dssp             BSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEECSTTCEEEC---SSEEEEESCEEEE
T ss_pred             CCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEecccceEEEC---CCCEEEEcCEEEe
Confidence            99999999999754                 112345532436899999999999999986543   3467777887773


Q ss_pred             cCeeeEecCC
Q 022635          129 HDKTMLIGAD  138 (294)
Q Consensus       129 h~~~~liG~~  138 (294)
                      . --.++|..
T Consensus       173 ~-vDFIFG~a  181 (342)
T 2nsp_A          173 T-VDFIFGDG  181 (342)
T ss_dssp             S-EEEEEESS
T ss_pred             c-eEEEeCCc
Confidence            2 23555643

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=97.99  E-value=0.00014  Score=70.74  Aligned_cols=121  Identities=16%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC---CCCCeeEeeeCCccEEEEccEEeecCeeeEe
Q 022635           59 GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD---YDDGLIDITRQSTDITVSRCYFTQHDKTMLI  135 (294)
Q Consensus        59 gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~---~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li  135 (294)
                      .|.+.+++||.|++|+++....   -++.+. .+++|.|+++++..   ..|| ||+ ..+++|+|++|.|...+-+.-+
T Consensus       192 ~i~~~~~~nv~i~giti~nsp~---~~i~~~-~~~nv~i~~v~I~~~~~NtDG-idi-~~s~nV~I~n~~i~~gDDcIai  265 (448)
T 3jur_A          192 FVQFYRCRNVLVEGVKIINSPM---WCIHPV-LSENVIIRNIEISSTGPNNDG-IDP-ESCKYMLIEKCRFDTGDDSVVI  265 (448)
T ss_dssp             SEEEESCEEEEEESCEEESCSS---CSEEEE-SCEEEEEESCEEEECSTTCCS-BCC-BSCEEEEEESCEEEESSEEEEE
T ss_pred             EEEEEcccceEEEeeEEEeCCC---ceEeee-ccCCEEEEeEEEeeccCCCcc-ccc-cCCcCEEEEeeEEEeCCCcEEe
Confidence            3778889999999999998643   478887 89999999999975   6899 788 4699999999999988888777


Q ss_pred             cCCCCCC---CCc-ceEEEEEceeecCCCCCc-ceee----c--CeEEEEcceEeCccceeE
Q 022635          136 GADPSHV---GDR-CIRVTIHHCLFDGTRQRH-PRLR----F--GKVHLYNNYTRNWGIYAV  186 (294)
Q Consensus       136 G~~d~~~---~d~-~~~vT~hhN~f~~~~~R~-P~~r----~--g~~h~~NN~~~n~~~~~~  186 (294)
                      .+.....   ... ..+|++.+|.+.+..... =.+.    .  -.+++.|+++.+.. .++
T Consensus       266 ksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~-~Gi  326 (448)
T 3jur_A          266 KSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVE-RAL  326 (448)
T ss_dssp             BCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCS-EEE
T ss_pred             ccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEeccc-ceE
Confidence            6541100   000 247999999873322221 1111    1  24688888887653 344

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=97.94  E-value=0.0014  Score=65.83  Aligned_cols=137  Identities=13%  Similarity=0.100  Sum_probs=93.5

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC----CCCCeeEeeeCCccEEEEccEEeecCeeeEe
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD----YDDGLIDITRQSTDITVSRCYFTQHDKTMLI  135 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li  135 (294)
                      |.+.+++||.|++|+|+...   .-+|.+. .+++|.|+++.+..    ..|| ||+. .+++|+|++|.|...+-+.-+
T Consensus       334 i~~~~~~nv~I~giti~ns~---~~~i~~~-~~~nv~i~~v~i~~~~~~NtDG-idi~-~s~nV~I~n~~i~~gDD~Iai  407 (608)
T 2uvf_A          334 MTLRGVENVYLAGFTVRNPA---FHGIMNL-ENHNVVANGLIHQTYDANNGDG-IEFG-NSQNVMVFNNFFDTGDDCINF  407 (608)
T ss_dssp             EEEESEEEEEEESCEEECCS---SCSEEEE-SCEEEEEESCEEECTTCTTCCS-EEEE-SCEEEEEESCEEECSSCSEEE
T ss_pred             EEEEeeeeEEEeCcEEecCC---CCEEEEe-cCCCEEEeeEEEcCCCCCCCCe-EEec-CCceEEEEeeEEecCCceEEe
Confidence            56677999999999999854   3578887 89999999999864    4788 7994 799999999999987777666


Q ss_pred             cCC-CC-CCCCc-ceEEEEEceeecCCCCCcceeec------CeEEEEcceEeCccceeEEe-----cC--CceEEEEce
Q 022635          136 GAD-PS-HVGDR-CIRVTIHHCLFDGTRQRHPRLRF------GKVHLYNNYTRNWGIYAVCA-----SV--ESQIYSQCN  199 (294)
Q Consensus       136 G~~-d~-~~~d~-~~~vT~hhN~f~~~~~R~P~~r~------g~~h~~NN~~~n~~~~~~~~-----~~--~~~v~~e~N  199 (294)
                      .+. +. ....+ ..+|++.+|.+.+...-. .+.-      -.+++.|+.+.+.. .++..     +.  -..+.++++
T Consensus       408 ksg~~~~g~~~~~s~nI~I~n~~~~~ghg~~-~iGS~~~~~v~nI~v~n~~~~~t~-~GirIKt~~g~gG~v~nI~~~ni  485 (608)
T 2uvf_A          408 AAGTGEKAQEQEPMKGAWLFNNYFRMGHGAI-VTGSHTGAWIEDILAENNVMYLTD-IGLRAKSTSTIGGGARNVTFRNN  485 (608)
T ss_dssp             ECCCSGGGGGSCCEEEEEEESCEECSSSCSE-EEESCCTTCEEEEEEESCEEESCS-EEEEEEEETTTCCEEEEEEEEEE
T ss_pred             cCCcCccccccccccCEEEEeEEEeCCCCeE-EEcccCCCCEEEEEEEeEEEECCC-ceEEEeeecCCCceEECcEEEee
Confidence            432 11 00111 248999999887643321 1211      24789999998753 34422     11  145666777


Q ss_pred             EEEcC
Q 022635          200 IYEAG  204 (294)
Q Consensus       200 ~f~~g  204 (294)
                      .+++.
T Consensus       486 ~m~~v  490 (608)
T 2uvf_A          486 AMRDL  490 (608)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            66665

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=97.84  E-value=0.00076  Score=63.82  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=85.8

Q ss_pred             chHHHHhhcCCC---eEEEEEeceEEEeCceeEec-cCeEEEeecc-ceEEEc-------------------CCEEEeee
Q 022635           10 GSLREGCRRREP---LWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQ-RIKLTG-------------------KGLRLKEC   65 (294)
Q Consensus        10 GsLr~a~~~~~P---~~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~-g~~i~g-------------------~gl~i~~~   65 (294)
                      -++++||++..+   +.+++-..|+.+  +.|.|. +++||.|.|. ...|.+                   ..|.+. +
T Consensus        45 ~TIq~Ai~aa~~~~~~~~I~I~~G~Y~--E~v~I~k~~itl~G~g~~~TiIt~~~~~~~~~~~g~~~gt~~saTv~V~-a  121 (364)
T 3uw0_A           45 SSINAALKSAPKDDTPFIIFLKNGVYT--ERLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVN-A  121 (364)
T ss_dssp             CCHHHHHHHSCSSSSCEEEEECSEEEC--CCEEECSTTEEEEESCTTTEEEEECCCTTSBCTTCSBCCTTTCCSEEEC-S
T ss_pred             ccHHHHHhhcccCCCcEEEEEeCCEEE--EEEEEcCCeEEEEecCCCCeEEEccccccccccccccccccCeeEEEEE-C
Confidence            479999987433   234554689988  778886 6799999975 344543                   236675 8


Q ss_pred             ccEEEEeeEEEcCCC-----------------CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee
Q 022635           66 EHVIICNLEFEGGRG-----------------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ  128 (294)
Q Consensus        66 ~NVIirnl~i~~~~~-----------------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~  128 (294)
                      ++++++||+|++...                 ...-||.+...++++.+.+|.|....|.+..-  .....-+.+|.|..
T Consensus       122 ~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G~QDTLy~~--~~gr~yf~~c~I~G  199 (364)
T 3uw0_A          122 PNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSK--TGSRSYFSDCEISG  199 (364)
T ss_dssp             TTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEECSBSCEEEC--TTCEEEEESCEEEE
T ss_pred             CCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEecccceEeC--CCCCEEEEcCEEEc
Confidence            999999999997631                 23456666435899999999999999997642  25667778888772


Q ss_pred             cCeeeEecC
Q 022635          129 HDKTMLIGA  137 (294)
Q Consensus       129 h~~~~liG~  137 (294)
                       .--.++|.
T Consensus       200 -tvDFIFG~  207 (364)
T 3uw0_A          200 -HVDFIFGS  207 (364)
T ss_dssp             -SEEEEEES
T ss_pred             -CCCEECCc
Confidence             22345564

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=97.77  E-value=0.0026  Score=59.63  Aligned_cols=135  Identities=19%  Similarity=0.205  Sum_probs=86.6

Q ss_pred             CCEEEeeeccEEEEeeEEEcCCCCCCCc-eEEcCCCceEEEEceeecCCCCCeeEeeeCC---------ccEEEEccEEe
Q 022635           58 KGLRLKECEHVIICNLEFEGGRGHDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQS---------TDITVSRCYFT  127 (294)
Q Consensus        58 ~gl~i~~~~NVIirnl~i~~~~~~~~D~-i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s---------~~vTiS~~~f~  127 (294)
                      .+|.+..++||+|.|..|..+    .|+ |.+..++++|-|-+|-|......+|--..++         ..||+-+|+|.
T Consensus       117 DaI~i~~s~nVWIDHcs~s~~----~Dg~idi~~~s~~vTISnn~f~~h~k~~LiG~sd~~~~~~d~g~~~vT~hhN~f~  192 (340)
T 3zsc_A          117 DYINVENSHHIWIDHITFVNG----NDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFK  192 (340)
T ss_dssp             CSEEEESCEEEEEESCEEESC----SSCSEEEETTCEEEEEESCEEESCSBCCEECCCTTSCHHHHHHSCEEEEESCEEE
T ss_pred             CeEEEecCCcEEEEeeeeccC----CccceEEecCCceEEEECcEeccCceeeEeCcCCCCccccccCCcEEEEECeEec
Confidence            458888899999999999964    454 6665468999999999997655544221111         37999999997


Q ss_pred             ecCe-eeEecCCCCCCCCcceEEEEEceeecC----------CCCCcceeec-CeEEEEcceEeCccc--------eeEE
Q 022635          128 QHDK-TMLIGADPSHVGDRCIRVTIHHCLFDG----------TRQRHPRLRF-GKVHLYNNYTRNWGI--------YAVC  187 (294)
Q Consensus       128 ~h~~-~~liG~~d~~~~d~~~~vT~hhN~f~~----------~~~R~P~~r~-g~~h~~NN~~~n~~~--------~~~~  187 (294)
                      ++.. .=.+...         .+-+.+|+|.+          .....=..+. .++-+.||||.+...        ..+.
T Consensus       193 ~~~~R~Pr~r~G---------~~Hv~NN~~~n~~~~~~~~~~~~~yai~~~~~a~i~~E~N~F~~~~~~~~~~~~~~p~~  263 (340)
T 3zsc_A          193 NLIQRMPRIRFG---------MAHVFNNFYSMGLRTGVSGNVFPIYGVASAMGAKVHVEGNYFMGYGAVMAEAGIAFLPT  263 (340)
T ss_dssp             SCCBCTTEEESS---------EEEEESCEEECCCCCSCSSCCSCCEEEEEETTCEEEEESCEEECSCHHHHHTTCCBEEE
T ss_pred             CCCCCCCcccCC---------eEEEEccEEECCccccccccceeeeeEecCCCCEEEEECcEEECCCccccccccccccc
Confidence            5332 1122211         46777899988          2211111222 578999999998643        1332


Q ss_pred             e---cCCceEEEEc----eEEEcCC
Q 022635          188 A---SVESQIYSQC----NIYEAGQ  205 (294)
Q Consensus       188 ~---~~~~~v~~e~----N~f~~g~  205 (294)
                      .   ...+.+...+    |.|....
T Consensus       264 ~~~~~~~G~~~~~~~~~~n~~~~~~  288 (340)
T 3zsc_A          264 RIMGPVEGYLTLGEGDAKNEFYYCK  288 (340)
T ss_dssp             EECTTTBCEEEECCGGGCCEEESBC
T ss_pred             ccCCCCceEEEecCcccceeeccCC
Confidence            2   2345666677    8887654

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.68  E-value=0.0006  Score=68.17  Aligned_cols=104  Identities=18%  Similarity=0.141  Sum_probs=79.2

Q ss_pred             cCeEEEeeccceEEEcC---CEEEeeeccE--EEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCC
Q 022635           42 SYKTIDGRGQRIKLTGK---GLRLKECEHV--IICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQS  116 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~---gl~i~~~~NV--Iirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s  116 (294)
                      .|++|.|.    +|.+.   .+.+..|+||  .|+++++.....+..|||.+.   +||.|.+|.|..+.| +|.++  +
T Consensus       333 ~NV~I~Gi----ti~NSp~w~i~~~~c~nV~~~I~nv~i~~~~~~nTDGIDi~---~NV~I~nc~I~~gDD-cIaIk--s  402 (574)
T 1ogo_X          333 QTWYCVGP----TINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEIY---PNSVVHDVFWHVNDD-AIKIY--Y  402 (574)
T ss_dssp             EEEEEESC----EEECCSSCSEEECSSSCEEEEEEEEEEECCCSTTCCCCBCC---TTCEEEEEEEEESSC-SEECC--S
T ss_pred             eeEEEECe----EEECCCCcEEeecCCCChhhEEEeeEeeCCCCCCCccCccc---CCEEEEeeEEECCCC-EEEEC--C
Confidence            46777664    56554   3667789999  999999886544458999984   999999999999988 57885  4


Q ss_pred             ccEEEEccEEee-cCee-eEecCCCCCCCCcceEEEEEceeecCC
Q 022635          117 TDITVSRCYFTQ-HDKT-MLIGADPSHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus       117 ~~vTiS~~~f~~-h~~~-~liG~~d~~~~d~~~~vT~hhN~f~~~  159 (294)
                      +||+|++|.+.. |.-+ .-+|++.    ....+|++.++.+.++
T Consensus       403 ~NI~I~nc~i~~g~g~g~IsIGS~~----g~V~NV~v~N~~i~~~  443 (574)
T 1ogo_X          403 SGASVSRATIWKCHNDPIIQMGWTS----RDISGVTIDTLNVIHT  443 (574)
T ss_dssp             TTCEEEEEEEEECSSSCSEECCSSC----CCEEEEEEEEEEEEEC
T ss_pred             ccEEEEeEEEECCCCCceEEEcCCC----CcEEEEEEEeEEEECC
Confidence            999999999874 5555 7788742    1224788888877654

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=97.67  E-value=0.00018  Score=67.30  Aligned_cols=104  Identities=13%  Similarity=0.210  Sum_probs=78.1

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCce-EEEEceeecC----------CCCCeeEeeeCCccEEEEccEEee
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRH-IWIDRCSLRD----------YDDGLIDITRQSTDITVSRCYFTQ  128 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~-vwIDHcs~s~----------~~Dg~id~~~~s~~vTiS~~~f~~  128 (294)
                      |.+..++ +.|++|+++...   ...|.+. .+++ |.|+++++..          ..|| +|+  .+++|+|++|.|..
T Consensus       100 i~~~~~~-v~i~giti~nsp---~~~i~i~-~~~n~v~i~~v~I~~~~~d~~~~~~NtDG-idi--~s~nV~I~n~~i~~  171 (335)
T 1k5c_A          100 FLKIKGS-GTYKKFEVLNSP---AQAISVG-PTDAHLTLDGITVDDFAGDTKNLGHNTDG-FDV--SANNVTIQNCIVKN  171 (335)
T ss_dssp             SEEEEEE-EEEESCEEESCS---SCCEEEE-EEEEEEEEESCEEECGGGGGGGCCCSCCS-EEE--ECSSEEEESCEEES
T ss_pred             EEEeceE-EEEEEEEEECCC---cceEEEE-ccCCeEEEEEEEEECCCCcccccCCCCCe-Ecc--cCCeEEEEeeEEEc
Confidence            6777788 999999999864   3568897 8999 9999999964          3688 788  69999999999998


Q ss_pred             cCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceee----cC---eEEEEcceEeCc
Q 022635          129 HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR----FG---KVHLYNNYTRNW  181 (294)
Q Consensus       129 h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r----~g---~~h~~NN~~~n~  181 (294)
                      .+-+.-++++        .+|++.++.+.....  =.+.    .+   .+++.|+.+.+.
T Consensus       172 gDDcIaiksg--------~nI~i~n~~~~~ghG--isIGS~g~~~~v~nV~v~n~~~~~t  221 (335)
T 1k5c_A          172 QDDCIAINDG--------NNIRFENNQCSGGHG--ISIGSIATGKHVSNVVIKGNTVTRS  221 (335)
T ss_dssp             SSCSEEEEEE--------EEEEEESCEEESSCC--EEEEEECTTCEEEEEEEESCEEEEE
T ss_pred             CCCEEEeeCC--------eeEEEEEEEEECCcc--CeEeeccCCCCEEEEEEEeeEEECC
Confidence            7777666653        279999988876432  2221    11   356777766653

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=97.63  E-value=0.00034  Score=69.97  Aligned_cols=77  Identities=10%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             eeccEEEEeeEEEcCCCCCCCceEEcCCCceE--EEEceeec----CCCCCeeEeeeCCccEEEEccEEeecCeeeEecC
Q 022635           64 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHI--WIDRCSLR----DYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA  137 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~v--wIDHcs~s----~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~  137 (294)
                      .|+||.|++|+++....   -.|.+. .|++|  .|++++..    +..|| ||+.   ++|+|++|.|...+-+.-+++
T Consensus       331 ~c~NV~I~Giti~NSp~---w~i~~~-~c~nV~~~I~nv~i~~~~~~nTDG-IDi~---~NV~I~nc~I~~gDDcIaIks  402 (574)
T 1ogo_X          331 GGQTWYCVGPTINAPPF---NTMDFN-GNSGISSQISDYKQVGAFFFQTDG-PEIY---PNSVVHDVFWHVNDDAIKIYY  402 (574)
T ss_dssp             SSEEEEEESCEEECCSS---CSEEEC-SSSCEEEEEEEEEEECCCSTTCCC-CBCC---TTCEEEEEEEEESSCSEECCS
T ss_pred             CceeEEEECeEEECCCC---cEEeec-CCCChhhEEEeeEeeCCCCCCCcc-Cccc---CCEEEEeeEEECCCCEEEECC
Confidence            79999999999998643   458886 89999  99999864    34899 7884   999999999999888888886


Q ss_pred             CCCCCCCcceEEEEEceeec
Q 022635          138 DPSHVGDRCIRVTIHHCLFD  157 (294)
Q Consensus       138 ~d~~~~d~~~~vT~hhN~f~  157 (294)
                      +         +|++.+|.+.
T Consensus       403 ~---------NI~I~nc~i~  413 (574)
T 1ogo_X          403 S---------GASVSRATIW  413 (574)
T ss_dssp             T---------TCEEEEEEEE
T ss_pred             c---------cEEEEeEEEE
Confidence            2         4677776543

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=97.60  E-value=0.0011  Score=62.50  Aligned_cols=139  Identities=16%  Similarity=0.218  Sum_probs=90.7

Q ss_pred             CCceEEcCCCceEEEEceeecC-------CCCCeeEeeeCCccEEEEccEEeecCeeeEe-cCCCCCCCCcceEEEEEce
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRD-------YDDGLIDITRQSTDITVSRCYFTQHDKTMLI-GADPSHVGDRCIRVTIHHC  154 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~-------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li-G~~d~~~~d~~~~vT~hhN  154 (294)
                      +.+|.|...++||+|.++.|..       ..|+ |.+ .++++|-|-+|.|......++. |...      ...||+.+|
T Consensus       123 G~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~Da-I~i-~~s~nVwIDHcs~s~~~d~~~~~g~~~------s~~VTISnn  194 (359)
T 1idk_A          123 GKGLRIVSGAENIIIQNIAVTDINPKYVWGGDA-ITL-DDCDLVWIDHVTTARIGRQHYVLGTSA------DNRVSLTNN  194 (359)
T ss_dssp             SCCEEECTTCEEEEEESCEEEEECTTEETSCCS-EEE-CSCEEEEEESCEEEEESSCSEEECCCT------TCEEEEESC
T ss_pred             cceEEEecCCCcEEEeCeEEEcccccccccCCc-eee-cCCCcEEEEeeEeecCCCCcEEecccC------cceEEEECc
Confidence            4568884368999999999974       5577 567 4799999999999864444332 3211      128999999


Q ss_pred             eecCCCC-------Ccc-eee-cC---eEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccceeeeehhccccccc
Q 022635          155 LFDGTRQ-------RHP-RLR-FG---KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLE  222 (294)
Q Consensus       155 ~f~~~~~-------R~P-~~r-~g---~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~  222 (294)
                      +|.+...       +.- ..- .|   .+.+.+|+|.+...+.-..+.+..+.+.||||.+-....   +        ..
T Consensus       195 ~f~~~~~~s~~~~G~h~~~~~L~G~sd~vT~hhN~f~~~~~R~Pr~r~g~~~hv~NN~~~n~~~~~---i--------~~  263 (359)
T 1idk_A          195 YIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHA---F--------EI  263 (359)
T ss_dssp             EEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEEEEEE---E--------EE
T ss_pred             EecCCcccccccCccccceEEEEecCCCeEEEceEeecCcccCccccCCceEEEECCEEecccceE---E--------ec
Confidence            9975432       111 111 12   689999999987655434444456889999998632111   0        11


Q ss_pred             CCcceEEEeCCeEeeCce
Q 022635          223 AKSGLIRSEGDIFLKGAQ  240 (294)
Q Consensus       223 ~~~G~~~~~gn~~~~g~~  240 (294)
                      ...+.+..++|+|.++..
T Consensus       264 ~~~~~i~~e~N~F~~~~~  281 (359)
T 1idk_A          264 GEGGYVLAEGNVFQNVDT  281 (359)
T ss_dssp             CTTCEEEEESCEEEEEEE
T ss_pred             cCCcEEEEEccEEECCCC
Confidence            223467788888887644

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=97.56  E-value=0.0029  Score=58.98  Aligned_cols=140  Identities=18%  Similarity=0.186  Sum_probs=90.2

Q ss_pred             cCCEEEee-eccEEEEeeEEEcCC------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeC-----CccEEEEcc
Q 022635           57 GKGLRLKE-CEHVIICNLEFEGGR------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ-----STDITVSRC  124 (294)
Q Consensus        57 g~gl~i~~-~~NVIirnl~i~~~~------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~-----s~~vTiS~~  124 (294)
                      +.+|.+.. ++||+|.|..|..+.      ...+..+.+..++++|=|-+|-|....-++|--..+     ...||+-+|
T Consensus       120 ~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~~~~~vT~~~N  199 (326)
T 3vmv_A          120 GTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPDKITYHHN  199 (326)
T ss_dssp             SCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEEEECEEECSSSCGGGCCEEEEEESC
T ss_pred             CCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEecCceEEEECCCCCCcccCccEEEEee
Confidence            34588885 899999999997532      111234566546889999999998654444322111     137999999


Q ss_pred             EEeecCe-eeEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCcc-----------ceeE----E
Q 022635          125 YFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWG-----------IYAV----C  187 (294)
Q Consensus       125 ~f~~h~~-~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~~-----------~~~~----~  187 (294)
                      +|.+... .=++...         .+-+.+|+|.+...+.-..+. +++-+.||||.+.+           ...+    .
T Consensus       200 ~f~~~~~R~Pr~r~G---------~~Hv~NN~~~n~~~~~~~~~~~a~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~  270 (326)
T 3vmv_A          200 YFNNLNSRVPLIRYA---------DVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSGQADPTTGFIKGPVGWFYG  270 (326)
T ss_dssp             EEEEEEECTTEEESC---------EEEEESCEEEEESSCSEEEETTCEEEEESCEEEEESCCSBCTTTCCBCSSEECCSC
T ss_pred             EecCCcCcCCcccCC---------cEEEEccEEECCCceEEeecCCcEEEEEceEEECCcCccccccccccccceeeccC
Confidence            9975321 1122211         567788999887666555554 57899999999862           1111    1


Q ss_pred             ecCCceEEEEceEEEcCC
Q 022635          188 ASVESQIYSQCNIYEAGQ  205 (294)
Q Consensus       188 ~~~~~~v~~e~N~f~~g~  205 (294)
                      ....+....++|.|.+.+
T Consensus       271 s~~~g~~~~~~n~~~n~~  288 (326)
T 3vmv_A          271 SPSTGYWNLRGNVFVNTP  288 (326)
T ss_dssp             SSSBCEEEEESCEEESSC
T ss_pred             CCCceEEEEECCeEccCc
Confidence            223456677899998764

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=97.55  E-value=0.0063  Score=57.31  Aligned_cols=146  Identities=20%  Similarity=0.153  Sum_probs=86.9

Q ss_pred             CceEEcCCCceEEEEceeecCC----------------CCCeeEeeeCCccEEEEccEEeec-----CeeeEecCC----
Q 022635           84 DGIQIKPNSRHIWIDRCSLRDY----------------DDGLIDITRQSTDITVSRCYFTQH-----DKTMLIGAD----  138 (294)
Q Consensus        84 D~i~i~~~~~~vwIDHcs~s~~----------------~Dg~id~~~~s~~vTiS~~~f~~h-----~~~~liG~~----  138 (294)
                      .+|.|. +++||+|.+..|...                .| .|.+ .++++|=|-+|.|+..     ....++|..    
T Consensus        96 ~gl~i~-~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~D-aI~i-~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~  172 (355)
T 1pcl_A           96 GSLVIK-GVKNVILRNLYIETPVDVAPHYESGDGWNAEWD-AAVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQH  172 (355)
T ss_pred             CEEEEe-cCCeEEEeeeEEEcCcccccccccccCccccCc-eEEe-cCCCcEEEEeeEEeccccCccccccccCcccccc
Confidence            467786 789999999999743                23 3677 4688888888888742     122344432    


Q ss_pred             CCC--CCCcceEEEEEceeecCCCCCcceee---------cC--eEEEEcceEeCccceeEEecCCceEEEEceEEEcCC
Q 022635          139 PSH--VGDRCIRVTIHHCLFDGTRQRHPRLR---------FG--KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ  205 (294)
Q Consensus       139 d~~--~~d~~~~vT~hhN~f~~~~~R~P~~r---------~g--~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~  205 (294)
                      |..  .......||+.+|+|.+... .=.+.         .|  ++.+.+|+|.+...+.-..+. +.+.+.||||.+..
T Consensus       173 Dgl~Di~~~s~~VTiS~n~f~~h~k-~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~PrvR~-G~~Hv~NN~~~~~~  250 (355)
T 1pcl_A          173 DGALDIKKGSDYVTISYSRFELHDK-TILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRF-GSIHAYNNVYLGDV  250 (355)
T ss_pred             ccceeeecCCCcEEEEeeEEcCCCc-eEEeCCCCCCcccccCcceEEEECcEEeCCcccCCceec-ceEEEEcceEEccc
Confidence            110  01112379999999987542 11111         12  588999999887655433332 45888999997643


Q ss_pred             ccceeeeehhcccccccCCcceEEEeCCeEeeC
Q 022635          206 KKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKG  238 (294)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~~g  238 (294)
                      .-....+...    ......+.+..++|+|..+
T Consensus       251 ~~~~~~~~ya----~g~~~~~~i~~e~N~F~~~  279 (355)
T 1pcl_A          251 KHSVYPYLYS----FGLGTSGSILSESNSFTLS  279 (355)
T ss_pred             CCCccccceE----ecCCCCcEEEEEccEEECC
Confidence            2111000000    0112345688899999987

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=97.54  E-value=0.0013  Score=64.87  Aligned_cols=141  Identities=17%  Similarity=0.143  Sum_probs=72.6

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEc-------CCCceEEEEceeecCCCCCe--------eEeee------CCcc
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIK-------PNSRHIWIDRCSLRDYDDGL--------IDITR------QSTD  118 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~-------~~~~~vwIDHcs~s~~~Dg~--------id~~~------~s~~  118 (294)
                      +.+. ++++.|+|.+|++...  +|.+.+.       -.+++.-|+||.|....+.-        +....      .+.+
T Consensus       121 iav~-G~~~~I~nn~I~~~~~--gd~i~i~~~~~~~~l~g~~n~I~~N~I~Gk~~~G~~i~gnngI~l~~~~~~~~~~~~  197 (506)
T 1dbg_A          121 VAIY-GSYNRITACVFDCFDE--ANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMY  197 (506)
T ss_dssp             EEEC-SSSCEEESCEEESCCS--SCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCCC
T ss_pred             eEEe-cCCeEEEeeEEEcCCC--CceeeEeecccceeeeccccEEECcEEECCcCcceEEecCceeEeccCcccccccCC
Confidence            4444 5899999999997532  1113231       13456678888887643211        11211      1367


Q ss_pred             EEEEccEEeecC------eeeEecCC-----CCCC-----C--Ccc--------eEEEEEceeecCCCCCcceeecC-eE
Q 022635          119 ITVSRCYFTQHD------KTMLIGAD-----PSHV-----G--DRC--------IRVTIHHCLFDGTRQRHPRLRFG-KV  171 (294)
Q Consensus       119 vTiS~~~f~~h~------~~~liG~~-----d~~~-----~--d~~--------~~vT~hhN~f~~~~~R~P~~r~g-~~  171 (294)
                      ..|.+|.|....      ...-+|..     +...     .  ++.        -+.++.+|.|.++.. .=.++++ ..
T Consensus       198 ~~I~nN~f~~~~~~~N~~e~iR~G~h~m~s~~~~VenN~f~~~~gg~aim~skS~~n~i~~N~~~~~~g-gi~l~~~~~s  276 (506)
T 1dbg_A          198 HRVDHCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQG-TMNFRHGDHQ  276 (506)
T ss_dssp             CEEESCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEESBSCEEESCEEESCSS-EEEEEECSSC
T ss_pred             eEEeCcEEcccccCCCccccEEEEEEecccCCcEEECCEEEeccCcEEEEEEecCCEEEECCEEEcccC-cEEEeecCcc
Confidence            788888887542      12223321     0000     0  000        024666666665533 2233444 35


Q ss_pred             EEEcceEeCcc----ceeEEecCCceEEEEceEEEcCC
Q 022635          172 HLYNNYTRNWG----IYAVCASVESQIYSQCNIYEAGQ  205 (294)
Q Consensus       172 h~~NN~~~n~~----~~~~~~~~~~~v~~e~N~f~~g~  205 (294)
                      .+.+|++.+.+    ..++-.. ++...+.+|||+...
T Consensus       277 ~I~~N~f~gN~~~~~~~Gi~i~-~~~~~I~nN~f~~~~  313 (506)
T 1dbg_A          277 VAINNFYIGNDQRFGYGGMFVW-GSRHVIACNYFELSE  313 (506)
T ss_dssp             EEESCEEEECSSSSCBCCEEEC-SBSCEEESCEEEESS
T ss_pred             EEECCEEECCcCccCceEEEEE-CCCCEEECCEEECCc
Confidence            78888776543    2233332 233477899998754

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=97.39  E-value=0.0033  Score=62.99  Aligned_cols=85  Identities=24%  Similarity=0.234  Sum_probs=63.4

Q ss_pred             eccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCC-----CCCeeEeeeCCccEEEEccEEeecCeeeEecCCC
Q 022635           65 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDY-----DDGLIDITRQSTDITVSRCYFTQHDKTMLIGADP  139 (294)
Q Consensus        65 ~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~-----~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d  139 (294)
                      ++||.|+|-+|+.   ..+|+|.|. ++++|+|.+|.+...     .-| +.+..++.+|||++|.|.+...+.-|-..+
T Consensus       182 S~NV~I~Nc~I~~---tGDDcIaIk-sseNI~I~Nc~~~gp~G~S~~~G-IsIGsgs~NVtV~Nc~i~nt~~GIrIKt~~  256 (609)
T 3gq8_A          182 SENIWIENCEATG---FGDDGITTH-HSQYINILNCYSHDPRLTANCNG-FEIDDGSRHVVLSNNRSKGCYGGIEIKAHG  256 (609)
T ss_dssp             CEEEEEESCEEES---CSSCSEEEC-SCEEEEEESCEEECCSSCSSCCS-EEECTTCEEEEEESEEEESSSEEEEEEECT
T ss_pred             ceeEEEEeeEEEe---cCCCEEEec-CCeeEEEEeEEEECCCCCCCccc-EEccCCcccEEEEeeEEECCCCEEEEEecC
Confidence            8999999999985   357999996 899999999999543     234 677656799999999999888877664332


Q ss_pred             CCCCCcceEEEEEceee
Q 022635          140 SHVGDRCIRVTIHHCLF  156 (294)
Q Consensus       140 ~~~~d~~~~vT~hhN~f  156 (294)
                      ...  ...+|.+.+|++
T Consensus       257 ~~~--~v~NV~I~n~vs  271 (609)
T 3gq8_A          257 DAP--AAYNISINGHMS  271 (609)
T ss_dssp             TSC--CCEEEEEEEEEE
T ss_pred             CCC--ccccEEEECCEe
Confidence            111  123677777755

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=97.38  E-value=0.0058  Score=58.40  Aligned_cols=57  Identities=16%  Similarity=0.092  Sum_probs=34.7

Q ss_pred             EEEEEceeecCCCCCcceeec--CeEEEEcceEeCccceeEEecCCc----eEEEEceEEEcCC
Q 022635          148 RVTIHHCLFDGTRQRHPRLRF--GKVHLYNNYTRNWGIYAVCASVES----QIYSQCNIYEAGQ  205 (294)
Q Consensus       148 ~vT~hhN~f~~~~~R~P~~r~--g~~h~~NN~~~n~~~~~~~~~~~~----~v~~e~N~f~~g~  205 (294)
                      +.++.+|+-.++...-=....  +.+.|.||..++.+ +++......    +..+++|.+....
T Consensus       257 ~~~v~nn~a~~N~~~G~~~n~~~~~~~i~nNt~~~N~-~~~~~~~~~~~~~~~~~~nNi~~~~~  319 (400)
T 1ru4_A          257 NHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNG-INYGFGSNVQSGQKHYFRNNVSLSAS  319 (400)
T ss_dssp             CCEEESCEEESCSSEEEECTTCSSCCEEESCEEESSS-EEEEECSCCCTTCCEEEESCEEESSC
T ss_pred             CEEEEeeEEECCcCcCEeecCCCCCEEEECeEEECCc-cceEEecCCCcccceEEEccEEEccc
Confidence            467777876655443222222  45799999887765 555544332    5567888887653

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=97.38  E-value=0.00065  Score=67.62  Aligned_cols=104  Identities=10%  Similarity=0.094  Sum_probs=76.1

Q ss_pred             CeEEEeeccceEEEcCC---EEEe-ee-cc--EEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeC
Q 022635           43 YKTIDGRGQRIKLTGKG---LRLK-EC-EH--VIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQ  115 (294)
Q Consensus        43 n~TI~G~g~g~~i~g~g---l~i~-~~-~N--VIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~  115 (294)
                      |++|.|.    +|.+..   +.|. .+ +|  |.|+++++.....+..|||.+.   +||.|.+|.|..+.| ++.++  
T Consensus       294 nV~I~Gi----ti~Nsp~w~i~i~~~~~~ni~V~I~n~~i~~~~~~NTDGidi~---~nV~I~n~~i~~gDD-cIaIk--  363 (549)
T 1x0c_A          294 TFVLNGV----TVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAFYGQTDGLEMY---PGTILQDVFYHTDDD-GLKMY--  363 (549)
T ss_dssp             EEEEESC----EEECCSSCSEEEECSCGGGEEEEEEEEEEECCCBTTCCCCBCC---TTCEEEEEEEEESSC-CEECC--
T ss_pred             EEEEECc----EEECCCceeEEeeccCCCCCeEEEEeeEeEcCCCCCCCccccc---CCEEEEeeEEeCCCC-EEEEC--
Confidence            5666654    565543   4433 34 59  9999999986544568999884   999999999999888 47885  


Q ss_pred             CccEEEEccEEee-cCee-eEecCCCCCCCCcceEEEEEceeecCCC
Q 022635          116 STDITVSRCYFTQ-HDKT-MLIGADPSHVGDRCIRVTIHHCLFDGTR  160 (294)
Q Consensus       116 s~~vTiS~~~f~~-h~~~-~liG~~d~~~~d~~~~vT~hhN~f~~~~  160 (294)
                      +.||+|++|.+.. |.-+ .-+|++.    +...+|++.++.+.++.
T Consensus       364 s~NI~I~n~~~~~~~g~~~IsiGs~~----~~V~NV~v~n~~i~~s~  406 (549)
T 1x0c_A          364 YSNVTARNIVMWKESVAPVVEFGWTP----RNTENVLFDNVDVIHQA  406 (549)
T ss_dssp             SSSEEEEEEEEEECSSSCSEECCBSC----CCEEEEEEEEEEEEECC
T ss_pred             CCCEEEEeeEEEcCCCCceEEECCCC----CcEEEEEEEeeEEECcc
Confidence            3999999999974 5555 6788742    12347888888876654

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=97.30  E-value=0.013  Score=55.38  Aligned_cols=148  Identities=20%  Similarity=0.196  Sum_probs=86.9

Q ss_pred             CCceEE---cCCCceEEEEceeecCC----------------CCCeeEeeeCCccEEEEccEEeec-----CeeeEecCC
Q 022635           83 VDGIQI---KPNSRHIWIDRCSLRDY----------------DDGLIDITRQSTDITVSRCYFTQH-----DKTMLIGAD  138 (294)
Q Consensus        83 ~D~i~i---~~~~~~vwIDHcs~s~~----------------~Dg~id~~~~s~~vTiS~~~f~~h-----~~~~liG~~  138 (294)
                      +-+|.|   . +++||+|-+..|...                .|+ |.+..++++|=|-+|.|+..     ....++|..
T Consensus       102 g~gl~i~~~~-~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~Da-I~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~  179 (361)
T 1pe9_A          102 NGSLIIDGTD-GTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDA-MNITNGAHHVWIDHVTISDGNFTDDMYTTKDGET  179 (361)
T ss_dssp             SSEEEEEGGG-TCEEEEEESCEEECCCCSSCEEETTTEEECCCCS-EEEETTCEEEEEESCEEECTTSCGGGCCEETTEE
T ss_pred             cCEEEEecCC-CCceEEEeCeEEEcCcccccccccccCcccCCce-EEeecCCceEEEEccEeecccccccccccccCcc
Confidence            356777   5 789999999999753                344 67743388888888888742     122233321


Q ss_pred             ----CCC--CCCcceEEEEEceeecCCCCCcceee---------cC--eEEEEcceEeCccceeEEecCCceEEEEceEE
Q 022635          139 ----PSH--VGDRCIRVTIHHCLFDGTRQRHPRLR---------FG--KVHLYNNYTRNWGIYAVCASVESQIYSQCNIY  201 (294)
Q Consensus       139 ----d~~--~~d~~~~vT~hhN~f~~~~~R~P~~r---------~g--~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f  201 (294)
                          |..  .....-.||+.+|+|.+... .=.+.         .|  ++.+.+|+|.+...+.=..+ .+++.+.||||
T Consensus       180 ~~~~DgllDi~~~s~~VTiS~n~f~~h~k-~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~~~R~Pr~R-~G~~Hv~NN~~  257 (361)
T 1pe9_A          180 YVQHDGALDIKRGSDYVTISNSLIDQHDK-TMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVR-YGSIHSFNNVF  257 (361)
T ss_dssp             CCCCCCSEEECTTCEEEEEESCEEEEEEE-CEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEES-SCEEEEESCEE
T ss_pred             eeeccceeeeecCCCcEEEEeeEEcCCCc-eeEecCCCCCcccccCcceEEEECeEEcCccccCcccc-cceEEEEcceE
Confidence                110  01112489999999976321 11111         12  58999999987655433333 24688999999


Q ss_pred             EcCCccceeeeehhcccccccCCcceEEEeCCeEeeC
Q 022635          202 EAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKG  238 (294)
Q Consensus       202 ~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~~g  238 (294)
                      .+...-....+.    .-......+.+..++|+|..+
T Consensus       258 ~~~~~~~~~~~~----ya~g~~~~~~i~~E~N~F~~~  290 (361)
T 1pe9_A          258 KGDAKDPVYRYQ----YSFGIGTSGSVLSEGNSFTIA  290 (361)
T ss_dssp             EEETTCSSSCCC----CSEEECTTCEEEEESCEEEEE
T ss_pred             ecccCCCccccc----eEecCCCCcEEEEECCEEECC
Confidence            754221110000    000112345788899999887

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=97.26  E-value=0.0016  Score=64.71  Aligned_cols=101  Identities=12%  Similarity=0.170  Sum_probs=71.6

Q ss_pred             eeeccEEEEeeEEEcCCCCCCCceEEcCCC-ce--EEEEceeec----CCCCCeeEeeeCCccEEEEccEEeecCeeeEe
Q 022635           63 KECEHVIICNLEFEGGRGHDVDGIQIKPNS-RH--IWIDRCSLR----DYDDGLIDITRQSTDITVSRCYFTQHDKTMLI  135 (294)
Q Consensus        63 ~~~~NVIirnl~i~~~~~~~~D~i~i~~~~-~~--vwIDHcs~s----~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li  135 (294)
                      ..|+||.|++|+++....   =.+.+...+ ++  |.||++++.    |..|| +|+.   ++|+|++|.|...+-+.-+
T Consensus       290 ~~c~nV~I~Giti~Nsp~---w~i~i~~~~~~ni~V~I~n~~i~~~~~~NTDG-idi~---~nV~I~n~~i~~gDDcIaI  362 (549)
T 1x0c_A          290 NSSQTFVLNGVTVSAPPF---NSMDWSGNSLDLITCRVDDYKQVGAFYGQTDG-LEMY---PGTILQDVFYHTDDDGLKM  362 (549)
T ss_dssp             SSCEEEEEESCEEECCSS---CSEEEECSCGGGEEEEEEEEEEECCCBTTCCC-CBCC---TTCEEEEEEEEESSCCEEC
T ss_pred             CCceEEEEECcEEECCCc---eeEEeeccCCCCCeEEEEeeEeEcCCCCCCCc-cccc---CCEEEEeeEEeCCCCEEEE
Confidence            678999999999998643   345544245 68  999999873    35898 7884   9999999999998888888


Q ss_pred             cCCCCCCCCcceEEEEEceeecCCCCCcceeec-------CeEEEEcceEeC
Q 022635          136 GADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-------GKVHLYNNYTRN  180 (294)
Q Consensus       136 G~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-------g~~h~~NN~~~n  180 (294)
                      +++         +|++.+|.+.... ..+++..       -.+++.|..+.+
T Consensus       363 ks~---------NI~I~n~~~~~~~-g~~~IsiGs~~~~V~NV~v~n~~i~~  404 (549)
T 1x0c_A          363 YYS---------NVTARNIVMWKES-VAPVVEFGWTPRNTENVLFDNVDVIH  404 (549)
T ss_dssp             CSS---------SEEEEEEEEEECS-SSCSEECCBSCCCEEEEEEEEEEEEE
T ss_pred             CCC---------CEEEEeeEEEcCC-CCceEEECCCCCcEEEEEEEeeEEEC
Confidence            762         6888888764321 1221221       146777777655

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=97.13  E-value=0.013  Score=55.20  Aligned_cols=142  Identities=15%  Similarity=0.082  Sum_probs=87.7

Q ss_pred             CCceEEcCCCceEEEEceeecC------CCCCeeEeeeCCccEEEEccEEeecCe-e--eEecC--CCCCC--CCcceEE
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRD------YDDGLIDITRQSTDITVSRCYFTQHDK-T--MLIGA--DPSHV--GDRCIRV  149 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~------~~Dg~id~~~~s~~vTiS~~~f~~h~~-~--~liG~--~d~~~--~d~~~~v  149 (294)
                      +-+|.|. +++||+|.+..|..      ..|+ |.+. ++++|=|-+|.|..... +  ..-+.  .|...  ......|
T Consensus       102 g~gl~i~-~~~NVIIrnl~i~~~~~~~~~~Da-I~i~-~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~V  178 (353)
T 1air_A          102 NFGIWIK-KSSDVVVQNMRIGYLPGGAKDGDM-IRVD-DSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTV  178 (353)
T ss_dssp             SSEEEEE-SCCSEEEESCEEESCSCGGGTCCS-EEEE-SCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEE
T ss_pred             CceEEEe-ccCcEEEeccEEEeCCCCCCCCCe-EEee-CCCcEEEEeeEEecCCcccccccccccccccceeeecccCcE
Confidence            4578886 89999999999974      3466 6774 79999999999974210 0  00000  01000  0011389


Q ss_pred             EEEceeecCCCCCcceeec------CeEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccceeeeehhcccccccC
Q 022635          150 TIHHCLFDGTRQRHPRLRF------GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEA  223 (294)
Q Consensus       150 T~hhN~f~~~~~R~P~~r~------g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~  223 (294)
                      |+.+|+|.+... .=.+..      -++.+.+|+|.+...+.-..+ .+++.+.||||.+-.....           ...
T Consensus       179 TISnn~f~~h~k-~~LiG~sd~~~g~~vT~hhN~f~~~~~R~Pr~r-~G~~Hv~NN~~~n~~~~~~-----------~~~  245 (353)
T 1air_A          179 TVSYNYIHGVKK-VGLDGSSSSDTGRNITYHHNYYNDVNARLPLQR-GGLVHAYNNLYTNITGSGL-----------NVR  245 (353)
T ss_dssp             EEESCEEEEEEE-CCEESSSTTCCCCEEEEESCEEEEEEECSCEEE-SSEEEEESCEEEEESSCSE-----------EEE
T ss_pred             EEEeeEEcCCCc-eeEECCCcCCCCceEEEEceEEcCCcCCCCCCc-CceEEEEccEEECCCCcee-----------ccC
Confidence            999999985321 111111      258999999987655433333 3578899999986432111           112


Q ss_pred             CcceEEEeCCeEeeCce
Q 022635          224 KSGLIRSEGDIFLKGAQ  240 (294)
Q Consensus       224 ~~G~~~~~gn~~~~g~~  240 (294)
                      ..+.+..++|+|.++..
T Consensus       246 ~~~~i~~e~N~F~~~~~  262 (353)
T 1air_A          246 QNGQALIENNWFEKAIN  262 (353)
T ss_dssp             TTCEEEEESCEEEEEES
T ss_pred             CCcEEEEEceEEECCCC
Confidence            34568889999988643

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=96.95  E-value=0.015  Score=54.07  Aligned_cols=136  Identities=9%  Similarity=0.082  Sum_probs=87.6

Q ss_pred             CCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEee------eCCccEEEEccEEeec-C
Q 022635           58 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT------RQSTDITVSRCYFTQH-D  130 (294)
Q Consensus        58 ~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~------~~s~~vTiS~~~f~~h-~  130 (294)
                      .||.+..+++++|++=++...   ..|||.+..++++++|.+|.+....++.+-+.      ..+.+++|++|.+... .
T Consensus       173 dGI~~~~s~~~~i~~N~~~~~---~~~GI~~~~~s~~v~I~nN~i~~~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~n~~  249 (377)
T 2pyg_A          173 DGFVADYLVDSVFENNVAYAN---DRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAR  249 (377)
T ss_dssp             CSEEEESEEEEEEESCEEESC---SSCSEEEETTCEEEEEESCEEESCSSCSEEEECCSSCCCCCEEEEEESCEEESCSS
T ss_pred             CceeEeccCCcEEECcEEEcc---ccCcEEEEeccCCeEEECCEEECccCceEEEeccccCCCCCccEEEECCEEEcCcc
Confidence            357777777777776644432   36999976348999999999998887765421      3578999999988753 3


Q ss_pred             eeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCccc---ee------EEec--------CCc
Q 022635          131 KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGI---YA------VCAS--------VES  192 (294)
Q Consensus       131 ~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~~~---~~------~~~~--------~~~  192 (294)
                      ++.++-..        ..+++.+|.+.++....=++.. -.+.+.||.+.+...   +.      +...        ...
T Consensus       250 ~Gi~~~~~--------~~v~i~~N~i~~~~~~GI~i~g~~~~~i~~N~i~~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~  321 (377)
T 2pyg_A          250 EGVLLKMT--------SDITLQNADIHGNGSSGVRVYGAQDVQILDNQIHDNAQAAAVPEVLLQSFDDTAGASGTYYTTL  321 (377)
T ss_dssp             CSEEEEEE--------EEEEEESCEEESCSSCSEEEEEEEEEEEESCEEESCCSSSSCCSEEEECEEETTSSSCEEECCB
T ss_pred             CceEeccc--------cCeEEECCEEECCCCceEEEecCCCcEEECcEEECCcccccccceEEEEecCCCccceeeeecc
Confidence            44443321        2688888888877544444432 246788887765321   10      1111        124


Q ss_pred             eEEEEceEEEcC
Q 022635          193 QIYSQCNIYEAG  204 (294)
Q Consensus       193 ~v~~e~N~f~~g  204 (294)
                      .+.+++|.|..-
T Consensus       322 ~~~i~~N~i~g~  333 (377)
T 2pyg_A          322 NTRIEGNTISGS  333 (377)
T ss_dssp             CCEEESCEEECC
T ss_pred             CeEEECCEEECc
Confidence            567889998873

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}

Probab=96.81  E-value=0.035  Score=53.33  Aligned_cols=121  Identities=14%  Similarity=0.257  Sum_probs=81.4

Q ss_pred             hHHHHhhcC-----CCeEEEEEeceEEEeCceeEec---cCeEEEeeccc---eEEE-------------------c---
Q 022635           11 SLREGCRRR-----EPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQR---IKLT-------------------G---   57 (294)
Q Consensus        11 sLr~a~~~~-----~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g---~~i~-------------------g---   57 (294)
                      ++++||++.     ..|.+|+-..|+.+  +.|.|.   +++||.|.|.+   ++|.                   |   
T Consensus        91 TIqeAVdaap~~~~~~r~vI~Ik~GvY~--E~V~Ip~~K~~ItL~G~G~~~t~Iti~~~~~~~~~~~d~~~~~n~~G~~~  168 (422)
T 3grh_A           91 TIQAAVDAAIIKRTNKRQYIAVMPGEYQ--GTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYM  168 (422)
T ss_dssp             SHHHHHHHHHTTCCSSCEEEEECSEEEE--SCEEECCCSSCEEEEECSSSGGGEEEEECCCTTSCHHHHHHHHCGGGSSC
T ss_pred             CHHHHHHhchhcCCCccEEEEEeCCeEe--eeEEecCCCCcEEEEeccCCCceEEEeecccccccccccccccccccccc
Confidence            899999762     23566666789999  778884   79999999763   4442                   0   


Q ss_pred             -----------------C--------CEEEeeeccEEEEeeEEEcCCC-------CCCCceEEcCCCceEEEEceeecCC
Q 022635           58 -----------------K--------GLRLKECEHVIICNLEFEGGRG-------HDVDGIQIKPNSRHIWIDRCSLRDY  105 (294)
Q Consensus        58 -----------------~--------gl~i~~~~NVIirnl~i~~~~~-------~~~D~i~i~~~~~~vwIDHcs~s~~  105 (294)
                                       .        .|.+. +++++++||+|++..+       ...-|+.+  .+.++.+.+|.|...
T Consensus       169 ~G~~aw~tf~~~~~~~sat~gT~~SAT~~V~-g~~F~a~niTf~Ntag~~~~~~~~QAVAL~v--~gDr~~fy~C~f~G~  245 (422)
T 3grh_A          169 PGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQ-NNGLQLQNLTIENTLGDSVDAGNHPAVALRT--DGDQVQINNVNILGR  245 (422)
T ss_dssp             TTSTTHHHHHHHHTCCSSSCCGGGCCSEEEC-CTTCEEEEEEEEETTGGGSCSSCCCCCSEEE--CCSSEEEEEEEEECS
T ss_pred             cCccccccccccccccccceeccceEEEEEE-CCCEEEEeeEEEeCCCCCCCCCCCceEEEEe--cCCcEEEEeeEEEee
Confidence                             0        13444 7999999999997532       23456666  478999999999988


Q ss_pred             CCCeeEee---------eCCccEEEEccEEeecCeeeEecC
Q 022635          106 DDGLIDIT---------RQSTDITVSRCYFTQHDKTMLIGA  137 (294)
Q Consensus       106 ~Dg~id~~---------~~s~~vTiS~~~f~~h~~~~liG~  137 (294)
                      .|=|+--.         .....--+.+|.|.. .--.++|.
T Consensus       246 QDTLy~~~~~~~~~~~~d~~gRqyy~~CyIeG-tVDFIFG~  285 (422)
T 3grh_A          246 QNTFFVTNSGVQNRLETNRQPRTLVTNSYIEG-DVDIVSGR  285 (422)
T ss_dssp             TTCEEECCCCTTCSCCSSCCCEEEEESCEEEE-SEEEEEES
T ss_pred             cceeeeccccccccccccccccEEEEecEEec-cccEEccC
Confidence            88875321         123455666776662 12245553

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=96.69  E-value=0.028  Score=53.99  Aligned_cols=145  Identities=21%  Similarity=0.208  Sum_probs=88.1

Q ss_pred             CCceEEcCCCceEEEEceeecCC--------------------CCCeeEeeeCCccEEEEccEEeecC-----eeeEecC
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRDY--------------------DDGLIDITRQSTDITVSRCYFTQHD-----KTMLIGA  137 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~~--------------------~Dg~id~~~~s~~vTiS~~~f~~h~-----~~~liG~  137 (294)
                      +.+|.|. +++||+|.+..|...                    .|+ |.+ .++++|=|-+|.|+...     ...++|.
T Consensus       147 g~gl~i~-~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~Da-I~i-~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr  223 (416)
T 1vbl_A          147 GGGFLIK-NVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDS-ISI-EGSSHIWIDHNTFTDGDHPDRSLGTYFGR  223 (416)
T ss_dssp             SCEEEEE-SCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCS-EEE-ESCEEEEEESCEEECTTCCGGGSCEETTE
T ss_pred             cCEEEee-cCceEEEeCeEEEcCccccccccccccccccccCCCce-EEe-cCCceEEEEccEEecCCCcccccccccCc
Confidence            4578886 789999999999653                    244 677 57889999899888421     1223332


Q ss_pred             C----CCC--CCCcceEEEEEceeecCCCCCcceee--------cC--eEEEEcceEeCccceeEEecCCceEEEEceEE
Q 022635          138 D----PSH--VGDRCIRVTIHHCLFDGTRQRHPRLR--------FG--KVHLYNNYTRNWGIYAVCASVESQIYSQCNIY  201 (294)
Q Consensus       138 ~----d~~--~~d~~~~vT~hhN~f~~~~~R~P~~r--------~g--~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f  201 (294)
                      .    |..  .......||+.+|+|.+... .=.+.        .|  ++.+.+|+|.+...+.-..+ .+++.+.||||
T Consensus       224 ~~~~~DGl~Di~~~s~~VTISnn~f~~h~k-~~LiG~sd~~~~d~g~~~VT~hhN~f~~~~~R~Pr~R-~G~~Hv~NN~~  301 (416)
T 1vbl_A          224 PFQQHDGALDIKNSSDFITISYNVFTNHDK-VTLIGASDSRMADSGHLRVTLHHNYYKNVTQRLPRVR-FGQVHIYNNYY  301 (416)
T ss_dssp             ECCCCCCSEEEESSCEEEEEESCEEEEEEE-CCEECSCTTCGGGTTCCCEEEESCEEEEEEECSSEES-SCEEEEESCEE
T ss_pred             ceeecccceeeecCCCcEEEEeeEEcCCCc-eeEeCCCCCCcccCCceEEEEECcEecCCccCCcccc-cceEEEEcceE
Confidence            1    110  00112489999999975321 11111        12  58999999987665543444 35788999999


Q ss_pred             EcCCccc-eeeeehhcccccccCCcceEEEeCCeEeeC
Q 022635          202 EAGQKKR-TFEYYTEKAADKLEAKSGLIRSEGDIFLKG  238 (294)
Q Consensus       202 ~~g~~~~-~~~~~~~~~~~~~~~~~G~~~~~gn~~~~g  238 (294)
                      .+..... ...+ .     ......+.+..++|+|..+
T Consensus       302 ~n~~~~~~~~~y-a-----~g~~~~~~i~~E~N~F~~~  333 (416)
T 1vbl_A          302 EFSNLADYDFQY-A-----WGVGVFSQIYAQNNYFSFD  333 (416)
T ss_dssp             EECTTSSSCCCC-S-----EEEETTCEEEEESCEEEES
T ss_pred             ECCCCCccccee-E-----eccCCCcEEEEECCEEECC
Confidence            8643210 0000 0     0112345788899999986

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=96.55  E-value=0.012  Score=56.30  Aligned_cols=57  Identities=9%  Similarity=0.139  Sum_probs=31.0

Q ss_pred             cCeEEEee-----ccceEEEcCCEEEee-eccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeec
Q 022635           42 SYKTIDGR-----GQRIKLTGKGLRLKE-CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLR  103 (294)
Q Consensus        42 sn~TI~G~-----g~g~~i~g~gl~i~~-~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s  103 (294)
                      +++||.|.     |..-+=...||.+.. ++++.|++++|...    .=||.++ +++++.|.+|.+.
T Consensus       141 ~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~~----~fGI~l~-~a~~~~I~~N~I~  203 (410)
T 2inu_A          141 RDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVYL----EHALIVR-GADALRVNDNMIA  203 (410)
T ss_dssp             ESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEESC----SEEEEET-TEESCEEESCEEE
T ss_pred             CCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEecc----cEEEEEc-cCCCcEEECCEEE
Confidence            37777777     433232334566653 67777888887753    2334443 4444444444444

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=96.36  E-value=0.025  Score=52.63  Aligned_cols=136  Identities=15%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             cCCEEEe-----eeccEEEEeeEEEcCC-C------CC-CCceEEcCCCceEEEEceeecCCCCCeeEeee------CCc
Q 022635           57 GKGLRLK-----ECEHVIICNLEFEGGR-G------HD-VDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR------QST  117 (294)
Q Consensus        57 g~gl~i~-----~~~NVIirnl~i~~~~-~------~~-~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~------~s~  117 (294)
                      +.+|.+.     .++||+|.|..|..+. .      .- +..|.+..++++|=|-+|-|....-++|--..      +..
T Consensus       113 ~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~VTISnn~f~~h~k~~L~G~sd~~~~~~~~  192 (330)
T 2qy1_A          113 ADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTKNSAA  192 (330)
T ss_dssp             CCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEEEEESCEEEEEEECCEESSSTTCGGGGGC
T ss_pred             CcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceEEEEcceeccCCeEEEECCCCccccCCCc
Confidence            3458887     5999999999997432 1      11 33456654689999999999764444332111      115


Q ss_pred             cEEEEccEEeecCe-eeEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCccceeEE---ecCCc
Q 022635          118 DITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYAVC---ASVES  192 (294)
Q Consensus       118 ~vTiS~~~f~~h~~-~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~~~~~~~---~~~~~  192 (294)
                      .||+-+|+|.+... .=++...         .+-+.+|+|.+.....-..+. +++-+.||||.+... .+.   .....
T Consensus       193 ~vT~h~N~f~~~~~R~Pr~r~G---------~~hv~NN~~~n~~~~~i~~~~~~~i~~e~N~F~~~~~-p~~~~~~~~~g  262 (330)
T 2qy1_A          193 RTTYHHNRFENVESRVPLQRFG---------LSHIYNNYFNNVTTSGINVRMGGIAKIESNYFENIKN-PVTSRDSSEIG  262 (330)
T ss_dssp             EEEEESCEEEEEEECTTEEESS---------EEEEESCEEEEECSCSEEEETTCEEEEESCEEEEEES-SEEECSSSSBC
T ss_pred             eEEEECcEEcCCCCCCCceecc---------eEEEEeeEEEcccceEeccCCCcEEEEEccEEECCCC-ceeeccCCCce
Confidence            89999999975331 1122211         466788999887666555543 578999999987532 221   12224


Q ss_pred             eEEEEceEEEc
Q 022635          193 QIYSQCNIYEA  203 (294)
Q Consensus       193 ~v~~e~N~f~~  203 (294)
                      ....++| |..
T Consensus       263 ~~~~~~n-~~~  272 (330)
T 2qy1_A          263 YWDLINN-YVG  272 (330)
T ss_dssp             EEEEESC-EEC
T ss_pred             eEEEeCC-ccc
Confidence            5667888 554

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=96.32  E-value=0.048  Score=52.04  Aligned_cols=137  Identities=15%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             cCCEEEeeeccEEEEeeEEEcCCCCC-------------CCc-eEEcCCCceEEEEceeecCCCCCeeEeeeC-------
Q 022635           57 GKGLRLKECEHVIICNLEFEGGRGHD-------------VDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITRQ-------  115 (294)
Q Consensus        57 g~gl~i~~~~NVIirnl~i~~~~~~~-------------~D~-i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~-------  115 (294)
                      +.+|.+.+++||+|.|..|..+...+             .|+ |.+..++++|-|-+|-|.....++|--..+       
T Consensus       183 ~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g  262 (399)
T 2o04_A          183 YDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDG  262 (399)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEESCCTTCGGGTT
T ss_pred             CCeEEecCCCcEEEEeeeeecCCCccccccccccceeeccccceeeeccCCcEEEEeeEEcCCCceeEeCCCCCCccccC
Confidence            45688889999999999999753111             243 455446889999999998654443321111       


Q ss_pred             CccEEEEccEEeecCe-eeEecCCCCCCCCcceEEEEEceeecCCCCCc-------ceee-cCeEEEEcceEeCccce--
Q 022635          116 STDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH-------PRLR-FGKVHLYNNYTRNWGIY--  184 (294)
Q Consensus       116 s~~vTiS~~~f~~h~~-~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~-------P~~r-~g~~h~~NN~~~n~~~~--  184 (294)
                      --.||+-+|+|.++.. .=.+...         .+=+.+|+|.+.....       =..+ .+++-+.||||.+....  
T Consensus       263 ~~~vT~h~N~f~~~~~R~Pr~R~G---------~~Hv~NN~~~n~~~~~~~~~~ya~g~~~~~~i~~e~N~F~~~~~~~~  333 (399)
T 2o04_A          263 KLKITLHHNRYKNIVQAAPRVRFG---------QVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAA  333 (399)
T ss_dssp             CCCEEEESCEEEEEEECTTEESSC---------EEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTTCCSG
T ss_pred             ceeEEEECcEecCCcccCCCcccc---------eEEEEcceEECCCCCCccceeeEeccCCCcEEEEEceEEECCCCCcc
Confidence            1289999999975332 1122211         4677789997664311       1111 25789999999975211  


Q ss_pred             -eEEec-CCceEEEEceEEE
Q 022635          185 -AVCAS-VESQIYSQCNIYE  202 (294)
Q Consensus       185 -~~~~~-~~~~v~~e~N~f~  202 (294)
                       .+..- .+..+...+|+|.
T Consensus       334 ~~~~~~s~~~~~~~~gn~~~  353 (399)
T 2o04_A          334 KTISVFSGGTALYDSGTLLN  353 (399)
T ss_dssp             GGEEECTTCCBCEEESCEET
T ss_pred             ceeeeccCCceEEEeCceec
Confidence             11111 2344556788885

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=96.06  E-value=0.068  Score=53.43  Aligned_cols=79  Identities=11%  Similarity=0.092  Sum_probs=39.1

Q ss_pred             EEEEceeecCCCCCeeEe-eeCCc-cEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcceeecCeEE
Q 022635           95 IWIDRCSLRDYDDGLIDI-TRQST-DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVH  172 (294)
Q Consensus        95 vwIDHcs~s~~~Dg~id~-~~~s~-~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h  172 (294)
                      |+|.+|.|..+ |.+|.+ |.++. +++++  .+....-+.-||+..   .....+|++.+ .+..+..|.+.++  .++
T Consensus       233 V~I~nc~I~tG-DDCIAI~KSGs~~ni~~e--~~~~GHgGISIGSe~---~ggV~NV~V~N-rIKt~~G~GG~V~--NIt  303 (600)
T 2x6w_A          233 TVYVNCPYSGV-ESCYFSMSSSFARNIACS--VQLHQHDTFYRGSTV---NGYCRGAYVVM-HAAEAAGAGSYAY--NMQ  303 (600)
T ss_dssp             EEEECSSSEEE-ESCEEECCCTTHHHHEEE--EEECSSSEEEESCEE---EEESEEEEEEE-CGGGCTTTCSEEE--EEE
T ss_pred             EEEEeeEEecC-CcEEEEecCCCcCCeEEE--EEcCCCCcEEecccc---cCcEEEEEEEE-EEEeecCCCceEE--EEE
Confidence            55555555544 333555 54442 24444  222111245555421   11224788877 6666666554444  456


Q ss_pred             EEcceEeCcc
Q 022635          173 LYNNYTRNWG  182 (294)
Q Consensus       173 ~~NN~~~n~~  182 (294)
                      +.|....+..
T Consensus       304 feNI~m~nV~  313 (600)
T 2x6w_A          304 VENNIAVIYG  313 (600)
T ss_dssp             EESCEEEESS
T ss_pred             EEEEEEEccc
Confidence            6666666554

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=95.80  E-value=0.076  Score=51.64  Aligned_cols=89  Identities=10%  Similarity=-0.010  Sum_probs=63.1

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCc-eEEcCCCceEEEEceeecCCCCCeeEeee-----------CCccEEEEccEEe
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDITR-----------QSTDITVSRCYFT  127 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~-i~i~~~~~~vwIDHcs~s~~~Dg~id~~~-----------~s~~vTiS~~~f~  127 (294)
                      +.+ .++||.|+|++|..+.  +.+| +... .++||.|++|.|.. ..| |.++.           ...+|++++|.|.
T Consensus       170 i~i-~s~nV~I~n~~I~~gd--dgiGs~~~~-~~~NV~V~n~~~~g-g~G-IrIktg~d~IG~~~~g~v~NI~~~Ni~~~  243 (464)
T 1h80_A          170 RLH-WSRNGIIERIKQNNAL--FGYGLIQTY-GADNILFRNLHSEG-GIA-LRMETDNLLMKNYKQGGIRNIFADNIRCS  243 (464)
T ss_dssp             EEE-EEEEEEEEEEEEESCC--TTCEEEEES-EEEEEEEEEEEEES-SEE-EEEECCCHHHHHHTCCEEEEEEEEEEEEE
T ss_pred             cee-eccCEEEeceEEecCC--CeEEecccC-CEeEEEEEeeEEEC-CCE-EEEEeCCceeccCCCCcEEEEEEEeEEEE
Confidence            345 4899999999999873  3445 3343 78999999999887 333 44432           2579999999999


Q ss_pred             ecCeeeEecCCCCCCCCcceEEEEEceeecC
Q 022635          128 QHDKTMLIGADPSHVGDRCIRVTIHHCLFDG  158 (294)
Q Consensus       128 ~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~  158 (294)
                      +-..+..|+.+...    ..+|+|-+-...+
T Consensus       244 nv~~~I~I~p~~~~----isnItfeNI~~t~  270 (464)
T 1h80_A          244 KGLAAVMFGPHFMK----NGDVQVTNVSSVS  270 (464)
T ss_dssp             SSSEEEEEECTTCB----CCCEEEEEEEEES
T ss_pred             CCceeEEEeCCCce----EeEEEEEEEEEEc
Confidence            98888888843211    1257776655555

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=95.59  E-value=0.096  Score=50.63  Aligned_cols=162  Identities=14%  Similarity=0.136  Sum_probs=92.8

Q ss_pred             hHHHHhhc----CCCeEEEEEece----EEEeCceeEeccCeEEEeeccceEEE----cCC-EEEee----eccEEEEee
Q 022635           11 SLREGCRR----REPLWIVFEVSG----TIHLSSYLSVSSYKTIDGRGQRIKLT----GKG-LRLKE----CEHVIICNL   73 (294)
Q Consensus        11 sLr~a~~~----~~P~~Ivf~v~G----~I~l~~~l~v~sn~TI~G~g~g~~i~----g~g-l~i~~----~~NVIirnl   73 (294)
                      .|++|+++    +++.+|+| -.|    +.-+.+.|.+.++++|.|.+....+.    ..| +....    -.-.-++||
T Consensus        70 AIQkAIdaA~a~~GGGtVyV-PaG~~~~tYlvt~tI~LkSnV~L~Ge~~AtIl~s~~~I~GtIia~~y~s~I~~~~VeNI  148 (514)
T 2vbk_A           70 AIQNAIDAVASLPSGGELFI-PASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNI  148 (514)
T ss_dssp             HHHHHHHHHHTSTTCEEEEC-CCCSSTTCEEESSCEEECTTEEEECCSTTSEEEECTTCCSEEEEECCCSCCSCEEEESC
T ss_pred             HHHHHHHHHhhcCCCeEEEE-CCCCcceeEEECCeEEecCCeEEEEecCceEeeccccccccEEeccCCccccccCceEE
Confidence            58888864    25677766 568    78888889999999999995443221    111 11100    012336788


Q ss_pred             EEEcCCCCCCCceEEcC-------------CCceEEEEceeec------C-----------CCCCeeEeeeCCccEEEEc
Q 022635           74 EFEGGRGHDVDGIQIKP-------------NSRHIWIDRCSLR------D-----------YDDGLIDITRQSTDITVSR  123 (294)
Q Consensus        74 ~i~~~~~~~~D~i~i~~-------------~~~~vwIDHcs~s------~-----------~~Dg~id~~~~s~~vTiS~  123 (294)
                      +|.+...  -||+...-             ..++|-|.+|+..      |           +.. .|++...+.+|.|++
T Consensus       149 aITG~GT--IDG~g~n~t~e~~~~Rq~~~~~fdnV~Vn~Vt~~v~~Sg~WTIhPi~Cqnvt~r~-gL~f~eSCrNV~Isn  225 (514)
T 2vbk_A          149 RVTGNNT--CNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRV-GLHFLGQCVSVSVSS  225 (514)
T ss_dssp             EEECCSS--SEEEEESCCTTCSSCCCEESEEEESCEEEEEEEEEEEESEEEEEEESCEEEEEEE-EEEEESCCEEEEEES
T ss_pred             EEECCCe--EeCCCCCccccceeeeccceEEeeeEEEEeEEEeEeccCcEEEeEeccCceeccc-CccccCCCCeEEEec
Confidence            8887432  12221110             1244555555431      2           112 356666789999999


Q ss_pred             cEEeec-------------------------CeeeEecCCCCCCCCcceE-EEEEceeecCCCCCcceeecCeEEEEcce
Q 022635          124 CYFTQH-------------------------DKTMLIGADPSHVGDRCIR-VTIHHCLFDGTRQRHPRLRFGKVHLYNNY  177 (294)
Q Consensus       124 ~~f~~h-------------------------~~~~liG~~d~~~~d~~~~-vT~hhN~f~~~~~R~P~~r~g~~h~~NN~  177 (294)
                      |+|+-.                         .-+..+|++...  .+..+ |++|.|+|.|+.+-.-.+-..+.-+.-|+
T Consensus       226 C~FsVGDdciaiksGk~~~~~~~~~~se~~~hgav~igSE~m~--~Gvk~~v~v~~Clf~~td~~~~~~~~~~~~~~~~~  303 (514)
T 2vbk_A          226 CHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMC--IGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENV  303 (514)
T ss_dssp             CEEECTTSCCTTCEEEEEECBCCTTTSSCBCCEEEEEESSEEE--ESCSEEEEESCCEEEEEESEEEEEESSEEEEESCC
T ss_pred             cEEecCcceeeeecCceecccccCCcchhcccccEEECchhhc--ccccccEEEEeeeccCCccccccccCCcceEEEec
Confidence            999821                         123455554111  11235 99999999999987665554444444454


Q ss_pred             E
Q 022635          178 T  178 (294)
Q Consensus       178 ~  178 (294)
                      -
T Consensus       304 ~  304 (514)
T 2vbk_A          304 N  304 (514)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=95.58  E-value=0.13  Score=52.68  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=68.1

Q ss_pred             hHHHHhhcC------------CCeEEEEEeceEEEeCceeEeccCeEEEeeccc-eEEE------cCCEEEee-------
Q 022635           11 SLREGCRRR------------EPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQR-IKLT------GKGLRLKE-------   64 (294)
Q Consensus        11 sLr~a~~~~------------~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g-~~i~------g~gl~i~~-------   64 (294)
                      .|++|+++.            .|.+|+| -.|+..+++.|.+.+++.|.|.+.. -+|+      |..| |..       
T Consensus        68 Aiq~Ai~~a~~~Gggc~~st~~~~~V~~-P~GtYlvs~tI~l~~~t~L~G~~~~~pvIka~~~F~G~~l-i~~d~y~~~G  145 (758)
T 3eqn_A           68 AIQAAINAGGRCGQGCDSTTTQPALVYF-PPGTYKVSSPLVVLYQTQLIGDAKNLPTLLAAPNFSGIAL-IDADPYLAGG  145 (758)
T ss_dssp             HHHHHHHTTSCSCTTCCCCSSSCEEEEE-CSSEEEESSCEECCTTEEEEECSSSCCEEEECTTCCSSCS-EESSCBCGGG
T ss_pred             HHHHHHHHhhhcccccccccccceEEEE-CCceEEEcccEEccCCeEEEecCCCCCeEecCCCCCCcce-eeccccCCCC
Confidence            588888753            2355555 6899999999999999999998643 2443      2221 110       


Q ss_pred             --------eccEEEEeeEEEcCCC-CCCCceEEcCCCceEEEEceeecCC------CCCeeEeeeCCccEEEEccEEeec
Q 022635           65 --------CEHVIICNLEFEGGRG-HDVDGIQIKPNSRHIWIDRCSLRDY------DDGLIDITRQSTDITVSRCYFTQH  129 (294)
Q Consensus        65 --------~~NVIirnl~i~~~~~-~~~D~i~i~~~~~~vwIDHcs~s~~------~Dg~id~~~~s~~vTiS~~~f~~h  129 (294)
                              .--.-||||.|..... ...-+|... .+.+..|.+|.|.-.      .+| |.+. ......|+.+.|..-
T Consensus       146 ~~w~~~~~~F~r~irNlviD~t~~~~~~~gIhw~-vaQatsL~Nv~i~m~~~sg~~~~G-I~~e-~GSgg~i~Dl~f~GG  222 (758)
T 3eqn_A          146 AQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQ-VSQATSLINIVFQMSTAAGNQHQG-IFME-NGSGGFLGDLVFNGG  222 (758)
T ss_dssp             CBSSCGGGCCCEEEEEEEEECTTCSSCEEEEECC-CCSSEEEEEEEEECCCSTTCCEEE-EEEC-SCCCCEEEEEEEESC
T ss_pred             ccccccccceeeeecceEEeccccCCCceEEEEE-ecCceEEEEEEEEecCCCCCccee-EEec-CCCceEEEeeEEeCC
Confidence                    0134566666664321 112233333 566666666666532      233 3342 234456666666655


Q ss_pred             CeeeEecC
Q 022635          130 DKTMLIGA  137 (294)
Q Consensus       130 ~~~~liG~  137 (294)
                      ++++.+|.
T Consensus       223 ~~G~~~gn  230 (758)
T 3eqn_A          223 NIGATFGN  230 (758)
T ss_dssp             SEEEEEEC
T ss_pred             ceEEEcCC
Confidence            55655554

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=90.67  E-value=1.6  Score=43.68  Aligned_cols=57  Identities=11%  Similarity=0.323  Sum_probs=43.8

Q ss_pred             EEeeEEEcCCCCCCCceEE---cCCCceEEEEcee----ecC--CCCCeeEeeeCCccEEEEccEEeecCeeeEe-cCC
Q 022635           70 ICNLEFEGGRGHDVDGIQI---KPNSRHIWIDRCS----LRD--YDDGLIDITRQSTDITVSRCYFTQHDKTMLI-GAD  138 (294)
Q Consensus        70 irnl~i~~~~~~~~D~i~i---~~~~~~vwIDHcs----~s~--~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li-G~~  138 (294)
                      |++|+|+.+.  ..-.|.+   . .+++|.|++|+    +..  ..||.         |+|++|.|...+-+.-| .+.
T Consensus       187 I~GITi~NSD--P~w~I~iG~~~-~c~NVtI~nvtfi~aI~sspNTDGI---------V~I~nc~I~tGDDCIAI~KSG  253 (600)
T 2x6w_A          187 VTGITFQNGD--VTWAITLGWNG-YGSNCYVRKCRFINLVNSSVNADHS---------TVYVNCPYSGVESCYFSMSSS  253 (600)
T ss_dssp             EESCEEESCC--CSCSEEECBTT-BEEEEEEESCEEECCCCCSSCCCEE---------EEEECSSSEEEESCEEECCCT
T ss_pred             EeCeEEECCC--CccEEEeCCCC-CcccEEEeCeEEcceEecCCCCCEE---------EEEEeeEEecCCcEEEEecCC
Confidence            8999999861  2345777   6 79999999999    543  46774         99999999988888777 443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1pxza_	346	b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark	1e-76
d1pe9a_	361	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	2e-56
d1qcxa_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	2e-55
d1bn8a_	399	b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta	3e-55
d1idka_	359	b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ	1e-51
d1o88a_	353	b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi,	2e-46

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  235 bits (601), Expect = 1e-76
 Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 26/291 (8%)

Query: 8   GPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRLKEC 65
            PG+LR G  R + LWI+F  +  I L   L V+ +KTIDGRG  + L   G  L +++ 
Sbjct: 54  TPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKV 113

Query: 66  EHVIICNLEFEGGRGHDVDGIQIKP------------------NSRHIWIDRCSLRDYDD 107
            HVI+ +L   G     +  + +                    N  + WID  SL D  D
Sbjct: 114 SHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSD 173

Query: 108 GLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRL 166
           GLID+T  ST IT+S  +F  H K ML+G D ++  D+ ++VT+    F     QR PR 
Sbjct: 174 GLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRA 233

Query: 167 RFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEA-KS 225
           R+G VH+ NN    W IYA+  S    I S+ N + A  +    E       +   A  +
Sbjct: 234 RYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACAN 293

Query: 226 GLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQ 276
            + RS  D F+ GA         E  +++ +E +         ++  Q+ +
Sbjct: 294 WVWRSTRDAFINGAYFVSSGKTEETNIYNSNEAFKV----ENGNAAPQLTK 340

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

 Score =  183 bits (466), Expect = 2e-56
 Identities = 62/311 (19%), Positives = 113/311 (36%), Gaps = 50/311 (16%)

Query: 6   DDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRL--- 62
                 ++            +         S +++ +  T+ G G   K     L +   
Sbjct: 51  GAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGT 110

Query: 63  KECEHVIICNLEFEGGR------------GHDVDGIQIKPNSRHIWIDRCSLRDYD---- 106
               +VII N+  +                 + D + I   + H+WID  ++ D +    
Sbjct: 111 DGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDD 170

Query: 107 -------------DGLIDITRQSTDITVSRCYFTQHDKTMLIGA-DPSHVGDRC-IRVTI 151
                        DG +DI R S  +T+S     QHDKTMLIG  D +   D+  + VT+
Sbjct: 171 MYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTL 230

Query: 152 HHCLFDGTRQRHPRLRFGKVHLYNNYTRNWG-------IYAVCASVESQIYSQCNIYEAG 204
            + +F+   +R PR+R+G +H +NN  +           Y+        + S+ N +   
Sbjct: 231 FNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIA 290

Query: 205 QKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTM 264
                      KA   ++  +G I S+    L G+   L    G     + S+    + +
Sbjct: 291 ------NLSASKACKVVKKFNGSIFSDNGSVLNGSAVDL---SGCGFSAYTSKIPYIYDV 341

Query: 265 EAPSDSLKQIL 275
           +  +  L Q +
Sbjct: 342 QPMTTELAQSI 352

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

 Score =  181 bits (460), Expect = 2e-55
 Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 11/207 (5%)

Query: 16  CRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRL-KECEHVIICNLE 74
           C   +       V+        ++V+S K+I G+G +  + GKGLR+    ++VII N+ 
Sbjct: 82  CDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIA 141

Query: 75  FEGGRGHDV---DGIQIKPNSRHIWIDRCSL-RDYDDGLIDITRQSTDITVSRCYFTQHD 130
                   V   D I +  +S  +WID  +  R     ++  T     +T+S        
Sbjct: 142 VTDINPKYVWGGDAITVD-DSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRS 200

Query: 131 KTMLIGADPSHVG----DRCIRVTIHHCLFDGTRQRHPRLRFGK-VHLYNNYTRNWGIYA 185
                     + G         VT+    F     R P+++    +H  NN   N+  +A
Sbjct: 201 DYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHA 260

Query: 186 VCASVESQIYSQCNIYEAGQKKRTFEY 212
                   + ++ N+++          
Sbjct: 261 FEIGTGGYVLAEGNVFQDVNVVVETPI 287

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

 Score =  181 bits (461), Expect = 3e-55
 Identities = 68/284 (23%), Positives = 106/284 (37%), Gaps = 57/284 (20%)

Query: 35  SSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR--------------- 79
              + + +  TI G G   K+ G   ++K  ++VII N+EF+                  
Sbjct: 120 RVMVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGN 178

Query: 80  -GHDVDGIQIKPNSRHIWIDRCSLR-----------------DYDDGLIDITRQSTDITV 121
                D I I     HIWID C+                    + DG  D +  +  IT+
Sbjct: 179 WNSQYDNITIN-GGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITM 237

Query: 122 SRCYFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN 180
           S  Y+  HDK+ + G+  S   D   +++T+HH  +    QR PR+RFG+VH+YNNY   
Sbjct: 238 SYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEG 297

Query: 181 WG-------IYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGD 233
                     YA      S+IY+Q N+ +              A        G    +  
Sbjct: 298 STSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLS--------AAKTISVFSGGTALYDSG 349

Query: 234 IFLKGAQAQLL--TGVGEECVFHPSEYYPTWTMEAPSDSLKQIL 275
             L G Q       G+     + PS +         S ++K  +
Sbjct: 350 TLLNGTQINASAANGLSSSVGWTPSLHGSID----ASANVKSNV 389

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

 Score =  171 bits (434), Expect = 1e-51
 Identities = 37/197 (18%), Positives = 72/197 (36%), Gaps = 11/197 (5%)

Query: 16  CRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRL-KECEHVIICNLE 74
           C   EP      V      +  ++V+S K++ G G    + GKGLR+    E++II N+ 
Sbjct: 82  CENYEPDAPSVSVEYYNAGTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIA 141

Query: 75  FEGGRGHDV---DGIQIKPNSRHIWIDRCSLRD-YDDGLIDITRQSTDITVSRCYFTQHD 130
                   V   D I +  +   +WID  +         +  T     ++++  Y     
Sbjct: 142 VTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGRQHYVLGTSADNRVSLTNNYIDGVS 200

Query: 131 KTMLIGADPSH----VGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYA 185
                     +    +      VT+       T  R P+++    +H  NNY  +   +A
Sbjct: 201 DYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHA 260

Query: 186 VCASVESQIYSQCNIYE 202
                   + ++ N+++
Sbjct: 261 FEIGEGGYVLAEGNVFQ 277

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

 Score =  157 bits (398), Expect = 2e-46
 Identities = 45/183 (24%), Positives = 65/183 (35%), Gaps = 17/183 (9%)

Query: 44  KTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPN-SRHIWIDRCSL 102
           K I   G        G+ +K+   V++ N+      G   DG  I+ + S ++W+D   L
Sbjct: 89  KGITIIGANGSSANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNEL 148

Query: 103 -------------RDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRV 149
                            +  +DI   S  +TVS  Y     K  L G   S   D    +
Sbjct: 149 FAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDG---SSSSDTGRNI 205

Query: 150 TIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRT 209
           T HH  ++    R P  R G VH YNN   N     +      Q   + N +E      T
Sbjct: 206 TYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVT 265

Query: 210 FEY 212
             Y
Sbjct: 266 SRY 268

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	100.0
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	100.0
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	100.0
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	100.0
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	100.0
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	100.0
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	100.0
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	98.89
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	98.71
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	98.58
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	98.36
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	98.34
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	98.3
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	98.26
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	98.21
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	98.09
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	98.01
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	97.72
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	97.53
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	97.53
d1gq8a_	319	Pectin methylesterase PemA {Carrot (Daucus carota)	97.42
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	97.41
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	97.26
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	97.25
d1qjva_	342	Pectin methylesterase PemA {Erwinia chrysanthemi [	97.14
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	97.11
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	97.04
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	97.03
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	96.95
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	96.81
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	96.78
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	96.67
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	96.54
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	96.25
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	96.13
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	95.52

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=4.9e-64  Score=474.06  Aligned_cols=276  Identities=34%  Similarity=0.507  Sum_probs=230.6

Q ss_pred             CccCCCC----CCchHHHHhhcCCCeEEEEEeceEEEeCceeEeccCeEEEeeccceEEEcCC--EEEeeeccEEEEeeE
Q 022635            1 MCLFIDD----GPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRLKECEHVIICNLE   74 (294)
Q Consensus         1 vtnl~ds----g~GsLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v~sn~TI~G~g~g~~i~g~g--l~i~~~~NVIirnl~   74 (294)
                      ||||+|+    ||||||+|+++++||||||+|+|+|+|+++|.|.|||||+|||..+.|.+.+  |.+..++|||||||+
T Consensus        43 Vt~l~D~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~l~~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~  122 (346)
T d1pxza_          43 VTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLH  122 (346)
T ss_dssp             ECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCE
T ss_pred             ecChhhccccCCCccHHHHhhCCCCeEEEEeccEEEeccceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceE
Confidence            8999998    9999999999999999999999999999999999999999999888888654  888889999999999


Q ss_pred             EEcCC-------------------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEe
Q 022635           75 FEGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLI  135 (294)
Q Consensus        75 i~~~~-------------------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li  135 (294)
                      ||.+.                   ..++|+|.++ +++|||||||+|+|+.||++|+++++++||||||+|++|.|++|+
T Consensus       123 i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~-~s~nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~  201 (346)
T d1pxza_         123 IHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLL  201 (346)
T ss_dssp             EECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEE
T ss_pred             EecCcccCCcccccccccCccccccCCCceeeee-cCceEEEECcEeeccccCceeEecCCEEEEEEeeEEccCcccccc
Confidence            99753                   2457999998 899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCcceEEEEEceeecCC-CCCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccceeeeeh
Q 022635          136 GADPSHVGDRCIRVTIHHCLFDGT-RQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYT  214 (294)
Q Consensus       136 G~~d~~~~d~~~~vT~hhN~f~~~-~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~  214 (294)
                      |+++....++.++||||||+|.++ .+|.|+.|+|.+|++||||++|..|++++++++++++|+|||++++.+.......
T Consensus       202 G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~  281 (346)
T d1pxza_         202 GHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTK  281 (346)
T ss_dssp             SCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEE
T ss_pred             CCCcccccCCCceEEEEccccCCCcccCCCccccceEEEECcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeec
Confidence            999876666778999999999765 5566788999999999999999999999999999999999999988754322111


Q ss_pred             hc-ccccccCCcceEEEeCCeEeeCceeeecccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCC
Q 022635          215 EK-AADKLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQ  282 (294)
Q Consensus       215 ~~-~~~~~~~~~G~~~~~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~  282 (294)
                      .. .........+.+++.++.|++++.............|.|++.   |++++|+ +++.++ +.|||.
T Consensus       282 ~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~~~~~~~~---y~~~~as-~V~~v~-~~AGal  345 (346)
T d1pxza_         282 RIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIYNSNEA---FKVENGN-AAPQLT-KNAGVV  345 (346)
T ss_dssp             ECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCCCTTTC---CCCCCGG-GHHHHT-TTCSSC
T ss_pred             ccccCCccccccceeeccCceeeccceeccCCCccccccccCccc---cccCCHH-HHHhhh-ccCCCC
Confidence            11 111122344578899999999887542222334455677643   6788886 789866 589985

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=100.00  E-value=1.1e-59  Score=445.62  Aligned_cols=272  Identities=27%  Similarity=0.407  Sum_probs=217.0

Q ss_pred             CccCCCCCCchHHHHhhcCCCeEEEEEeceEEEeCc--------------eeEeccCeEEEeeccceEEEcCCEEEeeec
Q 022635            1 MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLSS--------------YLSVSSYKTIDGRGQRIKLTGKGLRLKECE   66 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~~~P~~Ivf~v~G~I~l~~--------------~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~   66 (294)
                      ||||+|     ||+|+++++|+++||+|+|+|+|.+              +|.|.|||||+|||.+++|.|.+|.|++++
T Consensus        30 Vt~l~d-----L~~al~~~~~~~~vi~v~G~I~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~G~~~~i~g~gl~i~~a~  104 (355)
T d1pcla_          30 VKNISD-----FKKALNGTDSSAKIIKVTGPIDISGGKAYTSFDDQKARSQISIPSNTTIIGVGSNGKFTNGSLVIKGVK  104 (355)
T ss_pred             eCCHHH-----HHHHHhCcCCceEEEEECeEEEcCCccceeccccccccceEecCCCCeEEeccCceEEecCEEEEEccc
Confidence            799998     9999999999999999999999853              477889999999999999999999999999


Q ss_pred             cEEEEeeEEEcCC------------CCCCCceEEcCCCceEEEEceeecCCC-----------------CCeeEeeeCCc
Q 022635           67 HVIICNLEFEGGR------------GHDVDGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITRQST  117 (294)
Q Consensus        67 NVIirnl~i~~~~------------~~~~D~i~i~~~~~~vwIDHcs~s~~~-----------------Dg~id~~~~s~  117 (294)
                      ||||||||||++.            ..+.|+|.+. +++|||||||+|+|+.                 ||++|++++++
T Consensus       105 NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~i~~~-~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~dg~~d~~~~s~  183 (355)
T d1pcla_         105 NVILRNLYIETPVDVAPHYESGDGWNAEWDAAVID-NSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSD  183 (355)
T ss_pred             cEEEEeeEeecCcccCCccccCCCcCccCceEEec-CCccEEEECcccccCcccccccccccccccccccceeeecccee
Confidence            9999999999753            1357999997 8999999999999964                 88899999999


Q ss_pred             cEEEEccEEeecCeeeEecCCCCCC--CCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeCccc-------eeEEe
Q 022635          118 DITVSRCYFTQHDKTMLIGADPSHV--GDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI-------YAVCA  188 (294)
Q Consensus       118 ~vTiS~~~f~~h~~~~liG~~d~~~--~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~-------~~~~~  188 (294)
                      +||||||+|.+|.|++|+|++++..  .++..+||||||||+|+.+|+||+|+|++|++||||+++..       |+++.
T Consensus       184 ~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r~G~~hv~NN~~~n~~~~~~~~~~y~~~~  263 (355)
T d1pcla_         184 YVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVRFGSIHAYNNVYLGDVKHSVYPYLYSFGL  263 (355)
T ss_pred             eEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccCCcccCCcccccEEEEECcEEECCCCcccccceeeecc
Confidence            9999999999999999999987653  33467999999999999999999999999999999998754       68889


Q ss_pred             cCCceEEEEceEEEcCCccceeeeehhccccc-ccCCcceEEEeCCeEeeCceeeecccccceeeecCCCCCCCcccCCh
Q 022635          189 SVESQIYSQCNIYEAGQKKRTFEYYTEKAADK-LEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTMEAP  267 (294)
Q Consensus       189 ~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~-~~~~~G~~~~~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~~~a  267 (294)
                      +.++++++|+|||++++.+.....  ...... ......+++..++ +++|....... ......|.|+.+|+ |+++.+
T Consensus       264 ~~~~~v~~e~NyF~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~-~~~~~~~~~~~p~~-~~~~~~  338 (355)
T d1pcla_         264 GTSGSILSESNSFTLSNLKSIDGK--NPECSIVKQFNSKVFSDKGS-LVNGSTTTKLD-TCGLTAYKPTLPYK-YSAQTM  338 (355)
T ss_pred             CcCceEEEeCCEEECCCCcccccc--CCCccceeccCCcEEecCcc-cccCccccccC-CccccccccCCCcc-ceecCh
Confidence            999999999999999886543211  000000 1112223444344 34544332221 22335567766674 777654


Q ss_pred             hHHHHHHHHhccCCCC
Q 022635          268 SDSLKQILQICTGWQS  283 (294)
Q Consensus       268 ~~a~~~vv~~~AG~~~  283 (294)
                      ++++++.|.+.|||+.
T Consensus       339 a~~v~~~V~~~AGAGk  354 (355)
T d1pcla_         339 TSSLATSINNNAGYGK  354 (355)
T ss_pred             HHHHHHHHhhcCCCCc
Confidence            4589999999999975

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=100.00  E-value=1.2e-59  Score=446.18  Aligned_cols=267  Identities=24%  Similarity=0.394  Sum_probs=210.0

Q ss_pred             CccCCCCCCchHHHHhhcCCCeEEEEEeceEEEeC--------------ceeEeccCeEEEeeccceEEEcCCEEEe---
Q 022635            1 MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLS--------------SYLSVSSYKTIDGRGQRIKLTGKGLRLK---   63 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~~~P~~Ivf~v~G~I~l~--------------~~l~v~sn~TI~G~g~g~~i~g~gl~i~---   63 (294)
                      ||||+|     ||+||++..|+.|| .|+|+|++.              .+|.|.|||||+|||.+++|.+.+|.|.   
T Consensus        38 Vt~l~d-----L~~al~~~~~p~iI-~v~G~I~~~~~~~~~~~~~~~~~~~i~v~sn~TI~G~g~~~~i~~~gl~i~~~~  111 (361)
T d1pe9a_          38 VTNISE-----FTSALSAGAEAKII-QIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTD  111 (361)
T ss_dssp             ECSHHH-----HHHHHTTTTSCEEE-EECSEEETTTTCCCCSHHHHHHHSEEECCSSEEEEECTTCCEEESSEEEEEGGG
T ss_pred             eCCHHH-----HHHHHhCCCCeEEE-EEeeEEECCCCccccccccccccceEEeCCCcEEEEecCCeEEeeeeEEEeecc
Confidence            789997     99999875544443 499999995              4588899999999999999999999995   


Q ss_pred             eeccEEEEeeEEEcCCC------------CCCCceEEcCCCceEEEEceeecCCC-----------------CCeeEeee
Q 022635           64 ECEHVIICNLEFEGGRG------------HDVDGIQIKPNSRHIWIDRCSLRDYD-----------------DGLIDITR  114 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~~------------~~~D~i~i~~~~~~vwIDHcs~s~~~-----------------Dg~id~~~  114 (294)
                      +++||||||||||.+..            .+.|+|.|..+++|||||||+|+|+.                 ||++|+++
T Consensus       112 ~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~  191 (361)
T d1pe9a_         112 GTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKR  191 (361)
T ss_dssp             TCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEECT
T ss_pred             ccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccCCccccccccccCcceeeeeeeEEeec
Confidence            57899999999997531            35799999756899999999999964                 89999999


Q ss_pred             CCccEEEEccEEeecCeeeEecCCCCCC--CCcceEEEEEceeecCCCCCcceeecCeEEEEcceEeCccc-------ee
Q 022635          115 QSTDITVSRCYFTQHDKTMLIGADPSHV--GDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGI-------YA  185 (294)
Q Consensus       115 ~s~~vTiS~~~f~~h~~~~liG~~d~~~--~d~~~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~-------~~  185 (294)
                      ++++||||||+|.+|.|++|+|++++..  .++.++||||||||+++.+|+||+|+|++|+|||||+++..       |+
T Consensus       192 ~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~R~P~~r~G~~Hv~NNy~~n~~~~~~~~~~y~  271 (361)
T d1pe9a_         192 GSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYS  271 (361)
T ss_dssp             TCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEESSCEEEEESCEEEEETTCSSSCCCCS
T ss_pred             CccceEecCCcccCCCcceEeccCCCCccccCCcceEEEECccccCCcCcCCCeeCceEEEECceeecCcCcccccccee
Confidence            9999999999999999999999987642  23457999999999999999999999999999999998753       79


Q ss_pred             EEecCCceEEEEceEEEcCCccceeeeehhcccccccCCcc-eEEEeCCeEeeCceeeecccccceeeecCCCCCCCccc
Q 022635          186 VCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSG-LIRSEGDIFLKGAQAQLLTGVGEECVFHPSEYYPTWTM  264 (294)
Q Consensus       186 ~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G-~~~~~gn~~~~g~~~~~~~~~~~~~~~~p~~~y~~y~~  264 (294)
                      ++++.++++++|+|||++++.+....      ........| ++...++ +++|.......  .....+.++++|+ |++
T Consensus       272 ~~~~~~a~il~E~NyF~~~~~~~~~~------~~~~~~~~g~~~~~~~~-~~~g~~~~~~~--~~~~~~~~~~py~-y~~  341 (361)
T d1pe9a_         272 FGIGTSGSVLSEGNSFTIANLSASKA------CKVVKKFNGSIFSDNGS-VLNGSAVDLSG--CGFSAYTSKIPYI-YDV  341 (361)
T ss_dssp             EEECTTCEEEEESCEEEEETCCGGGG------GGGEEESSCCEEEEESC-EETTEECCCTT--SSCBCCCSCCCSC-CCC
T ss_pred             eecCCCCEEEEEceEEECCCCCcccc------cceeecCCCCEEecCCe-eecCccccccC--CcccccccCCCcc-ccc
Confidence            99999999999999999886543210      001112233 4544444 45665432211  1123344444564 788


Q ss_pred             CChhHHHHHHHHhccCCCC
Q 022635          265 EAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       265 ~~a~~a~~~vv~~~AG~~~  283 (294)
                      +++++++++.|.+.||++.
T Consensus       342 ~~~a~~v~~~V~~~AGaGk  360 (361)
T d1pe9a_         342 QPMTTELAQSITDNAGSGK  360 (361)
T ss_dssp             CCCCHHHHHHHHHHCSTTC
T ss_pred             ccchHHHHHHHHhcCCCCC
Confidence            8755689999999999975

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.2e-57  Score=431.82  Aligned_cols=234  Identities=29%  Similarity=0.501  Sum_probs=189.1

Q ss_pred             eeEeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCCC----------------CCCCceEEcCCCceEEEEce
Q 022635           37 YLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG----------------HDVDGIQIKPNSRHIWIDRC  100 (294)
Q Consensus        37 ~l~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~----------------~~~D~i~i~~~~~~vwIDHc  100 (294)
                      +|+|.|||||+|+|.+++|.|.+|.|+ ++|||||||+||+...                .+.|+|.|+ +++|||||||
T Consensus       122 ~i~V~SNkTIiG~G~~~~i~g~gl~i~-a~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~-~s~~VWIDH~  199 (399)
T d1bn8a_         122 MVDIPANTTIVGSGTNAKVVGGNFQIK-SDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITIN-GGTHIWIDHC  199 (399)
T ss_dssp             EEEECSSEEEEECTTCCEEESCEEEEC-SEEEEEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEE-SCEEEEEESC
T ss_pred             EEecCCCceEEecCCCcEEeccEEEEe-CceEEEeCeEEEcCcccccccccccccccCcCCCCceEEEe-cCccEEEECc
Confidence            488899999999999999999999995 9999999999997531                357999998 8999999999


Q ss_pred             eecCCC-----------------CCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCC-cceEEEEEceeecCCCCC
Q 022635          101 SLRDYD-----------------DGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGD-RCIRVTIHHCLFDGTRQR  162 (294)
Q Consensus       101 s~s~~~-----------------Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d-~~~~vT~hhN~f~~~~~R  162 (294)
                      +|+|+.                 ||+||+++++++||||||+|.+|+|++|+|++|+...+ +.++||||||||+++.+|
T Consensus       200 t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~~~R  279 (399)
T d1bn8a_         200 TFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQR  279 (399)
T ss_dssp             EEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEEEEC
T ss_pred             eeccCCcccccccccccccccccccceeecccceeEEeECccccCCcceeEecCCCCcccccCCceEEEEeeEecCcccc
Confidence            999974                 99999999999999999999999999999999876433 468999999999999999


Q ss_pred             cceeecCeEEEEcceEeCccc-------eeEEecCCceEEEEceEEEcCCccceeeeehhcccccccCCcceEEEeCCeE
Q 022635          163 HPRLRFGKVHLYNNYTRNWGI-------YAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIF  235 (294)
Q Consensus       163 ~P~~r~g~~h~~NN~~~n~~~-------~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~  235 (294)
                      +||+|+|++|+|||||++|..       |++++++++++++|+|||++++.+......       .......++..++++
T Consensus       280 ~Prvr~g~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~EgN~F~~~~~~~~~~~~-------~~~~g~~~~~~gn~~  352 (399)
T d1bn8a_         280 APRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPGLSAAKTIS-------VFSGGTALYDSGTLL  352 (399)
T ss_dssp             SSEESSCEEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTTCCSGGGEE-------ECTTCCBCEEESCEE
T ss_pred             CccccccEEEEEccEeECCCcccccccceeeccccCceEEEEeeEEECCCCcccceec-------cccCCceEecCCcEe
Confidence            999999999999999999864       799999999999999999988765332111       011122355566665


Q ss_pred             eeCceeeec--ccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCCCc
Q 022635          236 LKGAQAQLL--TGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQSI  284 (294)
Q Consensus       236 ~~g~~~~~~--~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~~  284 (294)
                      - +......  .+......|.|++   +|++++|+ ++++.|.+.|||+..
T Consensus       353 ~-g~~~~~~~~~~~~~~~~~~p~y---~y~~~~A~-~v~~~V~a~AGAGkl  398 (399)
T d1bn8a_         353 N-GTQINASAANGLSSSVGWTPSL---HGSIDASA-NVKSNVINQAGAGKL  398 (399)
T ss_dssp             T-TEECCHHHHTTCBSCCSCCCCS---CCCCCCHH-HHHHHHHHHCSTTSC
T ss_pred             c-CccccCccCcCccccccccccc---ccccCCHH-HHHHHhhccCCCccc
Confidence            3 3222111  1123345566763   36899996 788888899999863

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=100.00  E-value=2.2e-56  Score=423.35  Aligned_cols=269  Identities=17%  Similarity=0.188  Sum_probs=204.6

Q ss_pred             CccCCCCCCchHHHHhhcCCCeEEEEEeceEEEeC---------------------------------------------
Q 022635            1 MCLFIDDGPGSLREGCRRREPLWIVFEVSGTIHLS---------------------------------------------   35 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~~~P~~Ivf~v~G~I~l~---------------------------------------------   35 (294)
                      ||||+|     ||+||++++||+|+|  +|+|++.                                             
T Consensus        25 Vtt~~e-----L~~al~~~~PriI~~--~gtid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (359)
T d1qcxa_          25 PTTTDE-----LVSYLGDNEPRVIIL--DQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHSWCDNYQASAPKVSVTYD   97 (359)
T ss_dssp             CCSHHH-----HHHHHHSSSCEEEEE--CSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGGHHHHHCTTSCEEEEEEE
T ss_pred             eCCHHH-----HHHHhcCCCCeEEEE--CceEcccccccccccccccccccccccccccccccccccccccCcceeeeee
Confidence            788876     999999999999997  5887765                                             


Q ss_pred             ----ceeEeccCeEEEeeccceEEEcCCEEE-eeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCC
Q 022635           36 ----SYLSVSSYKTIDGRGQRIKLTGKGLRL-KECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDD  107 (294)
Q Consensus        36 ----~~l~v~sn~TI~G~g~g~~i~g~gl~i-~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~D  107 (294)
                          .+|.|.|||||+|+|.++.|.|.+|.+ .+++|||||||+||++..   +++|+|.|. +++|||||||+|+|+.|
T Consensus        98 ~~~~~~i~v~sn~TI~G~g~~~~i~g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~-~s~nvwIDH~s~s~~~d  176 (359)
T d1qcxa_          98 KAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVD-DSDLVWIDHVTTARIGR  176 (359)
T ss_dssp             GGGTSCEECCSSEEEEECTTCCEEESCCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEE-SCCCEEEESCEEEEESS
T ss_pred             ccCcceEEeCCCCeEEeccCCeEEEccceEEEeCCccEEEeCeEEecCCCCCCCCCCeEEee-CCCCEEEEeeeccccCC
Confidence                258889999999999999999999976 579999999999997653   568999997 89999999999999887


Q ss_pred             C-eeEeeeCCccEEEEccEEeecCeeeEecCCCCC----CCCcceEEEEEceeecCCCCCcceeecCe-EEEEcceEeCc
Q 022635          108 G-LIDITRQSTDITVSRCYFTQHDKTMLIGADPSH----VGDRCIRVTIHHCLFDGTRQRHPRLRFGK-VHLYNNYTRNW  181 (294)
Q Consensus       108 g-~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~----~~d~~~~vT~hhN~f~~~~~R~P~~r~g~-~h~~NN~~~n~  181 (294)
                      + ++++++.+++||||||+|.+|.+.+++|.++..    ..++.++||||||||+++.+|+||+|+|. +|++||||+||
T Consensus       177 ~~~~~~~~~s~~vTvs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~r~g~~~hv~NN~~~n~  256 (359)
T d1qcxa_         177 QHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNF  256 (359)
T ss_dssp             CSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEE
T ss_pred             CceEeeccCCCceEeeccEeccCccccccccccCCCCceecCCCceEEEEeeeccCCCCCCccccCCceEEEEeeEEeCc
Confidence            6 568888899999999999999999999866543    13456899999999999999999999996 89999999999


Q ss_pred             cceeEEecCCceEEEEceEEEcCCccceee----eehhcccc---cccCCcceEEEeCCeEeeCceeeecccccceeeec
Q 022635          182 GIYAVCASVESQIYSQCNIYEAGQKKRTFE----YYTEKAAD---KLEAKSGLIRSEGDIFLKGAQAQLLTGVGEECVFH  254 (294)
Q Consensus       182 ~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~----~~~~~~~~---~~~~~~G~~~~~gn~~~~g~~~~~~~~~~~~~~~~  254 (294)
                      ..|++++++++++++|+|||++++.+....    .+......   ......|.. ...+.+.+..... .........|.
T Consensus       257 ~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~n~~~~~~~~~-~~~~~~~~~~~  334 (359)
T d1qcxa_         257 DGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRS-CQLNAFGNSGSMS-GSDTSIISKFA  334 (359)
T ss_dssp             EEEEEEECTTEEEEEESCEEEEEEEEECSSCSSEEECCCSHHHHGGGHHHHSSC-CCCCEEESCCCCC-CBCGGGGGGGT
T ss_pred             CCEEEecCCceEEEEEeeEEECCCCcccccccceeeccCCcccccccccccccc-ccccccccCcccc-cCCcccccccC
Confidence            999999999999999999999876543311    11000000   000001110 1234444433221 11111122233


Q ss_pred             CCCCCCCcccCChhHHHHHHHHhccCCCC
Q 022635          255 PSEYYPTWTMEAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       255 p~~~y~~y~~~~a~~a~~~vv~~~AG~~~  283 (294)
                      ++  |. |++++|+ ++++.|.+.||++.
T Consensus       335 ~~--~~-~t~~~a~-~v~~~V~~~AG~GK  359 (359)
T d1qcxa_         335 GK--TI-AAAHPPG-AIAQWTMKNAGQGK  359 (359)
T ss_dssp             TS--CC-CCCCCGG-GHHHHHHHHSSTTC
T ss_pred             Cc--cc-cCcCCHH-HHHHHHHhcCCCCC
Confidence            33  43 6889996 68888888999863

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=100.00  E-value=3.8e-52  Score=394.27  Aligned_cols=200  Identities=19%  Similarity=0.178  Sum_probs=169.7

Q ss_pred             CccCCCCCCchHHHHhhcCCCeEEEEE-----------------------------------------------eceEEE
Q 022635            1 MCLFIDDGPGSLREGCRRREPLWIVFE-----------------------------------------------VSGTIH   33 (294)
Q Consensus         1 vtnl~dsg~GsLr~a~~~~~P~~Ivf~-----------------------------------------------v~G~I~   33 (294)
                      ||||+|     ||+||++++||+|+|+                                               +++.+.
T Consensus        25 Vtt~~e-----L~~al~~~~PriI~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (359)
T d1idka_          25 PDTIDE-----LVSYLGDDEARVIVLTKTFDFTDSEGTTTGTGCAPWGTASACQVAIDQDDWCENYEPDAPSVSVEYYNA   99 (359)
T ss_dssp             CCSHHH-----HHHHHHSSSCEEEEECSEEECTTTTCEEEEEEECTTCSSTTBCEEECGGGHHHHHSCCSCEEEEEEESS
T ss_pred             eCCHHH-----HHHHhcCCCCeEEEEcceEeccccccccccccccccccccccccccccccccccccccCccceeeeecc
Confidence            788875     9999999999999973                                               233333


Q ss_pred             eCceeEeccCeEEEeeccceEEEcCCEEE-eeeccEEEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCe
Q 022635           34 LSSYLSVSSYKTIDGRGQRIKLTGKGLRL-KECEHVIICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGL  109 (294)
Q Consensus        34 l~~~l~v~sn~TI~G~g~g~~i~g~gl~i-~~~~NVIirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~  109 (294)
                      +..+|+|.|||||+|+|.+++|.|.||.| ++++|||||||+||++..   +++|+|.|+ +++|||||||+|+|+.|+.
T Consensus       100 ~~~~i~v~sn~TI~G~g~~~~i~g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~-~s~nVwIDH~s~s~~~d~~  178 (359)
T d1idka_         100 GTLGITVTSNKSLIGEGSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLD-DCDLVWIDHVTTARIGRQH  178 (359)
T ss_dssp             TTSCEEECSSEEEEECTTTCEEESCCEEECTTCEEEEEESCEEEEECTTEETSCCSEEEC-SCEEEEEESCEEEEESSCS
T ss_pred             CCCceEeCCCceEEeccCCeEEecCceEEEecCceEEEECcEEecCCCCCCCCCCeEEee-CCccEEEEeeeeccCCCCc
Confidence            44568999999999999999999999988 579999999999998653   568999997 8999999999999999997


Q ss_pred             e-EeeeCCccEEEEccEEeecCeeeEecCCCCC----CCCcceEEEEEceeecCCCCCcceeecC-eEEEEcceEeCccc
Q 022635          110 I-DITRQSTDITVSRCYFTQHDKTMLIGADPSH----VGDRCIRVTIHHCLFDGTRQRHPRLRFG-KVHLYNNYTRNWGI  183 (294)
Q Consensus       110 i-d~~~~s~~vTiS~~~f~~h~~~~liG~~d~~----~~d~~~~vT~hhN~f~~~~~R~P~~r~g-~~h~~NN~~~n~~~  183 (294)
                      + +..+.+++||||||+|.+|.+.++.+.+...    ..+...+||||||||+++.+|+||+|+| .+|++||||++|..
T Consensus       179 ~~~~~~~s~~vTis~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~r~g~~~hv~NN~~~n~~~  258 (359)
T d1idka_         179 YVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDISG  258 (359)
T ss_dssp             EEECCCTTCEEEEESCEEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEEEE
T ss_pred             eeeeccCCCceeeeceeeeccccccccccccccCCceecCCCccEEEEeeEEccCCCCCceecccceEEEECcEEECccc
Confidence            6 5567899999999999988766555433211    1223469999999999999999999998 69999999999999


Q ss_pred             eeEEecCCceEEEEceEEEcCCc
Q 022635          184 YAVCASVESQIYSQCNIYEAGQK  206 (294)
Q Consensus       184 ~~~~~~~~~~v~~e~N~f~~g~~  206 (294)
                      |++.+++++++++|+|||++...
T Consensus       259 ~~i~~~~~~~i~~e~N~F~~~~~  281 (359)
T d1idka_         259 HAFEIGEGGYVLAEGNVFQNVDT  281 (359)
T ss_dssp             EEEEECTTCEEEEESCEEEEEEE
T ss_pred             eEEecCCceeEEEeceEEeCCcC
Confidence            99999999999999999986543

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=100.00  E-value=4.6e-48  Score=365.33  Aligned_cols=247  Identities=22%  Similarity=0.237  Sum_probs=196.1

Q ss_pred             CeEEEEEeceEEEeC-----------------cee--EeccCeEEEeeccceEEEcCCEEEeeeccEEEEeeEEEcCCC-
Q 022635           21 PLWIVFEVSGTIHLS-----------------SYL--SVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRG-   80 (294)
Q Consensus        21 P~~Ivf~v~G~I~l~-----------------~~l--~v~sn~TI~G~g~g~~i~g~gl~i~~~~NVIirnl~i~~~~~-   80 (294)
                      ++..++.++|.|+..                 ..+  ...+++||+|+  ...+.+.+|.+.+++|||||||+||.+.. 
T Consensus        49 ~~~~vi~~~G~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~i~G~--~~~~~~~gl~i~~~~nViirnl~i~~~~~~  126 (353)
T d1o88a_          49 AYPLVITYTGNEDSLINAAAANICGQWSKDPRGVEIKEFTKGITIIGA--NGSSANFGIWIKKSSDVVVQNMRIGYLPGG  126 (353)
T ss_dssp             SSCEEEEECCCCHHHHHHHHTTGGGSTTSCCCEEEEESBCSCEEEEEC--TTCCBSSEEEEESCCSEEEESCEEECCSCG
T ss_pred             CeEEEEEEeeeeecccCcccccccccccccccCcEEEecCCCEEEEcC--CCccccceEEEeccceEEEeCcEEecCCCC
Confidence            344566789988731                 111  12467787776  44678899999999999999999997643 


Q ss_pred             -CCCCceEEcCCCceEEEEceeecCCCC-------------CeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcc
Q 022635           81 -HDVDGIQIKPNSRHIWIDRCSLRDYDD-------------GLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRC  146 (294)
Q Consensus        81 -~~~D~i~i~~~~~~vwIDHcs~s~~~D-------------g~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~  146 (294)
                       .++|+|.++ +++|||||||+|+|+.|             +++|+++++++||||||+|.+|.|++|+|+++...   .
T Consensus       127 ~~~~D~i~~~-~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~n~~~~~~k~~l~g~~~~~~---~  202 (353)
T d1o88a_         127 AKDGDMIRVD-DSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDT---G  202 (353)
T ss_dssp             GGTCCSEEEE-SCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSSSCC---C
T ss_pred             CCCCcEEEEe-cccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEECcccccccccceeCCccCcC---C
Confidence             568999998 89999999999999765             56889999999999999999999999999987532   2


Q ss_pred             eEEEEEceeecCCCCCcceeecCeEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccceeeeehhcccccccCCcc
Q 022635          147 IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSG  226 (294)
Q Consensus       147 ~~vT~hhN~f~~~~~R~P~~r~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~~~~G  226 (294)
                      .+||||||||+++.+|+||+|+|.+|+|||||++|..|+++.++++++++|+|||++++.+....+        +....|
T Consensus       203 ~~vT~hhN~~~~~~~R~P~~~~g~~h~~NN~~~n~~~~~~~~~~~~~~~~e~N~f~~~~~p~~~~~--------~~~~~g  274 (353)
T d1o88a_         203 RNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRY--------DGKNFG  274 (353)
T ss_dssp             CEEEEESCEEEEEEECSCEEESSEEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEESSEEECS--------SSSSCC
T ss_pred             ceEEEEeeEEcCCccCCcceecceEEEEEEEEecccceEEecCCCceEEEEeeEEecccCCccccc--------cCCcce
Confidence            489999999999999999999999999999999999999999999999999999998876543221        234567


Q ss_pred             eEEEeCCeEeeCceee-------------ecccccceeeecCCCCCCCcccCChhHHHHHHHHhccCCCC
Q 022635          227 LIRSEGDIFLKGAQAQ-------------LLTGVGEECVFHPSEYYPTWTMEAPSDSLKQILQICTGWQS  283 (294)
Q Consensus       227 ~~~~~gn~~~~g~~~~-------------~~~~~~~~~~~~p~~~y~~y~~~~a~~a~~~vv~~~AG~~~  283 (294)
                      +++..+|.+..+....             ..........+.|+.+|+ |++++|+ +++++|+++|||+.
T Consensus       275 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~t~~~A~-~v~~~V~~~AGaGk  342 (353)
T d1o88a_         275 TWVLKGNNITKPADFSTYSITWTADTKPYVNADSWTSTGTFPTVAYN-YSPVSAQ-CVKDKLPGYAGVGK  342 (353)
T ss_dssp             EEEEESCSCCSTTHHHHTTEECCCCSSCCEECTTCCCCSCCCCCCSC-CCCCCHH-HHHHHGGGTSSSSS
T ss_pred             eEEECCCeeecccccccccccccccccccccCCcccccccccCCCcc-cccCCHH-HHHHHHHhcCCCCC
Confidence            8999999887643210             000111223455666674 8999996 78999999999987

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=98.89  E-value=2.1e-08  Score=93.18  Aligned_cols=93  Identities=20%  Similarity=0.377  Sum_probs=51.5

Q ss_pred             EEEeeeccEEEEeeEEEcCCC------------------------CCCCceEEcCCCceEEEEceeecCCCCCeeEeee-
Q 022635           60 LRLKECEHVIICNLEFEGGRG------------------------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITR-  114 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~------------------------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~-  114 (294)
                      |.+..++||.|++|+|+....                        ...|||.+. ++++|+|++|.|..+.|. +.++. 
T Consensus       154 i~~~~~~nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~-~s~nv~I~n~~i~~gDD~-i~~ks~  231 (376)
T d1bhea_         154 IQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM-SSKNITIAYSNIATGDDN-VAIKAY  231 (376)
T ss_dssp             EEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEE-SCEEEEEESCEEECSSCS-EEEEEC
T ss_pred             EEEEecccEEEEeeEEecCCceEEEEeCCceEEEEeEeccCCccCCCcceeecc-ccceEEEEeceeecCCCc-eeeecc
Confidence            777788899999988886531                        224566664 556666666666444333 44432 


Q ss_pred             ----CCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCC
Q 022635          115 ----QSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus       115 ----~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~  159 (294)
                          .+.||+|.+|.|.. ..++.+|+...    ...+|+|++|.|.++
T Consensus       232 ~~~~~~~ni~i~n~~~~~-~~g~~iGs~~~----~v~nv~i~n~~~~~~  275 (376)
T d1bhea_         232 KGRAETRNISILHNDFGT-GHGMSIGSETM----GVYNVTVDDLKMNGT  275 (376)
T ss_dssp             TTSCCEEEEEEEEEEECS-SSCEEEEEEES----SEEEEEEEEEEEESC
T ss_pred             cCCCCcceEEEEeeEEec-CCCceeccccC----CEEEEEEEeeeEcCC
Confidence                13456666666653 33455554321    112466666655554

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=98.71  E-value=1.7e-07  Score=88.28  Aligned_cols=117  Identities=21%  Similarity=0.287  Sum_probs=72.4

Q ss_pred             CchHHHHhhcCCCeEEEEEeceEEEeCceeEe------ccCeEEEeec-cceEEEcC-CEEEeeeccEEEEeeEEEcCCC
Q 022635            9 PGSLREGCRRREPLWIVFEVSGTIHLSSYLSV------SSYKTIDGRG-QRIKLTGK-GLRLKECEHVIICNLEFEGGRG   80 (294)
Q Consensus         9 ~GsLr~a~~~~~P~~Ivf~v~G~I~l~~~l~v------~sn~TI~G~g-~g~~i~g~-gl~i~~~~NVIirnl~i~~~~~   80 (294)
                      .-+|++||++..|...|+-..|+.+- ..|.+      ...+||.+++ ..+.|.|. .+.|. +++|+|++|+|+.+..
T Consensus         6 ~~tiq~Ai~~a~pGDtI~l~~GtY~~-~~i~~~~~Gt~~~pIti~a~~~g~v~i~G~s~i~i~-g~~v~i~Gl~~~~~~~   83 (481)
T d1ofla_           6 NETLYQVVKEVKPGGLVQIADGTYKD-VQLIVSNSGKSGLPITIKALNPGKVFFTGDAKVELR-GEHLILEGIWFKDGNR   83 (481)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSEEEET-CEEEECCCCBTTBCEEEEESSTTSEEEEESCEEEEC-SSSEEEESCEEEEECC
T ss_pred             hHHHHHHHHhCCCCCEEEECCCEEEc-CEEEeccCcccCCCEEEEeCCCCceEEcCCCeEEEE-eCCEEEeCeEEECCCC
Confidence            35899999998887777768898862 23433      2468999984 45677775 47775 7899999999996531


Q ss_pred             ------CCCCceEEcCCCceEEEEceeecCCCCCe---eEe-----eeCCccEEEEccEEee
Q 022635           81 ------HDVDGIQIKPNSRHIWIDRCSLRDYDDGL---IDI-----TRQSTDITVSRCYFTQ  128 (294)
Q Consensus        81 ------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~---id~-----~~~s~~vTiS~~~f~~  128 (294)
                            ....++... .+.++.|.+|.+.......   .+.     .....+.+|++|.|..
T Consensus        84 ~~~~~~~~~~~~~~~-~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~I~~n~~~~  144 (481)
T d1ofla_          84 AIQAWKSHGPGLVAI-YGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTD  144 (481)
T ss_dssp             CGGGCCTTSCCSEEE-CSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEEC
T ss_pred             ccceeeccCCceEEe-EeecceEeeeEeecccccccceeccceeEEEeeccceEEECceEec
Confidence                  122333332 4566666666665432211   111     0123456666666653

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=98.58  E-value=1.1e-06  Score=80.18  Aligned_cols=73  Identities=18%  Similarity=0.232  Sum_probs=53.4

Q ss_pred             CCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee-cCee-eEecCCCCCCCCcceEEEEEceeecCC
Q 022635           82 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKT-MLIGADPSHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus        82 ~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~-h~~~-~liG~~d~~~~d~~~~vT~hhN~f~~~  159 (294)
                      ..|||.+. ++++|+|++|.|..+.|. +.++ ...+|+|++|.+.. |.-. .-+|....   ....+|++.++.|.++
T Consensus       151 NtDGidi~-~s~nV~I~n~~i~tgDDc-Iaik-s~~ni~i~n~~c~~~hG~sigslG~~~~---~~v~nV~v~n~~i~~t  224 (335)
T d1czfa_         151 NTDAFDVG-NSVGVNIIKPWVHNQDDC-LAVN-SGENIWFTGGTCIGGHGLSIGSVGDRSN---NVVKNVTIEHSTVSNS  224 (335)
T ss_dssp             SCCSEEEC-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSCCEEEEEECSSSC---CEEEEEEEEEEEEEEE
T ss_pred             CCCceEec-CCCeEEEEeeEEecCCce-EEec-CceEEEEEEEEEECCCCccccccCCCCc---CCEeEEEEEeeEEECC
Confidence            56999997 899999999999877666 7785 57899999999874 3322 23454321   2235899999988765


Q ss_pred             C
Q 022635          160 R  160 (294)
Q Consensus       160 ~  160 (294)
                      .
T Consensus       225 ~  225 (335)
T d1czfa_         225 E  225 (335)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=98.36  E-value=4.1e-06  Score=78.60  Aligned_cols=101  Identities=15%  Similarity=0.330  Sum_probs=76.6

Q ss_pred             EEEcC---CEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecC
Q 022635           54 KLTGK---GLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHD  130 (294)
Q Consensus        54 ~i~g~---gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~  130 (294)
                      ++...   .+.+..++||.|+||+|+.+.....|||.+. + +||||.+|.+..+ |.++.++.++.+|+|+++.+. +.
T Consensus       144 t~~nsp~~~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~-~-snv~I~n~~i~~g-DDcIaiks~s~nI~i~n~~c~-~g  219 (422)
T d1rmga_         144 ILVDAPAFHFTMDTCSDGEVYNMAIRGGNEGGLDGIDVW-G-SNIWVHDVEVTNK-DECVTVKSPANNILVESIYCN-WS  219 (422)
T ss_dssp             EEECCSSCSEEEEEEEEEEEEEEEEECCSSTTCCSEEEE-E-EEEEEEEEEEESS-SEEEEEEEEEEEEEEEEEEEE-SS
T ss_pred             EecCCCceEEEEeccccEEEEeeEEcCCCCCccceEeec-c-cEEEEEeeEEEcC-CCccccCCCCccEEEEeeEEc-cc
Confidence            45443   4777789999999999998765667999996 4 6899999999765 555889989999999998887 44


Q ss_pred             eeeEecCCCCCCCCcceEEEEEceeecCCC
Q 022635          131 KTMLIGADPSHVGDRCIRVTIHHCLFDGTR  160 (294)
Q Consensus       131 ~~~liG~~d~~~~d~~~~vT~hhN~f~~~~  160 (294)
                      .++-+|+....  ....+|++.++++.++.
T Consensus       220 ~GisiGs~g~~--~~V~nV~v~n~~~~~s~  247 (422)
T d1rmga_         220 GGCAMGSLGAD--TDVTDIVYRNVYTWSSN  247 (422)
T ss_dssp             SEEEEEEECTT--EEEEEEEEEEEEEESSS
T ss_pred             cceeEeeccCC--CCEEEEEEEeEEEeCCC
Confidence            56777753211  11247899998887764

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=98.34  E-value=3.8e-06  Score=76.70  Aligned_cols=100  Identities=16%  Similarity=0.314  Sum_probs=70.9

Q ss_pred             EEEeeeccEEEEeeEEEcCC-----CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee-cCeee
Q 022635           60 LRLKECEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTM  133 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~-----~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~-h~~~~  133 (294)
                      |.+..++||.|+||+|+...     ....|||.+. ++++|+|.+|.|..+.|. +.++ ...+|+|++|.+.. |.-++
T Consensus       130 ~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~-~s~nV~I~n~~i~~gDDc-Iaik-s~~ni~i~n~~c~~ghG~si  206 (339)
T d1ia5a_         130 FSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIG-TSTYVTISGATVYNQDDC-VAVN-SGENIYFSGGYCSGGHGLSI  206 (339)
T ss_dssp             EEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEE-SCEEEEEESCEEECSSCS-EEES-SEEEEEEESCEEESSSCEEE
T ss_pred             EEEecccEEEEEEEEEecccCCccCCCCCCccccC-CCCeEEEeeeEEEcCCCe-EEec-CccEEEEEEeEEecccccee
Confidence            55556788888888887532     2457999997 899999999999976665 7885 57899999999985 33222


Q ss_pred             -EecCCCCCCCCcceEEEEEceeecCCCCCccee
Q 022635          134 -LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRL  166 (294)
Q Consensus       134 -liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~  166 (294)
                       -+|....   ....+|++.++.|.++. +.-|+
T Consensus       207 gslG~~~~---~~v~nV~v~n~~~~~t~-~GirI  236 (339)
T d1ia5a_         207 GSVGGRSD---NTVKNVTFVDSTIINSD-NGVRI  236 (339)
T ss_dssp             EEECSSSC---CEEEEEEEEEEEEESCS-EEEEE
T ss_pred             cccccCcc---ccEEEEEEECCcccCCc-ceeEE
Confidence             3464321   22347999998888653 33444

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=98.30  E-value=1.6e-05  Score=72.45  Aligned_cols=147  Identities=16%  Similarity=0.176  Sum_probs=103.5

Q ss_pred             cCeEEEeeccceEEEcCC------------------EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeec
Q 022635           42 SYKTIDGRGQRIKLTGKG------------------LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLR  103 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~g------------------l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s  103 (294)
                      +++||.|.|.+ +|.|.|                  |.+.+++|+.|++|+|+...   .=.|.+. .+++|.|++.++.
T Consensus        72 ~ni~i~G~g~g-~IDG~G~~wW~~~~~~~~~~rP~~l~~~~~~nv~i~gitl~nsp---~w~~~~~-~s~nv~i~~v~I~  146 (339)
T d1ia5a_          72 SDLTITGASGH-SINGDGSRWWDGEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSP---VQVFSVA-GSDYLTLKDITID  146 (339)
T ss_dssp             ESCEEEECTTC-EEECCGGGTCSSCTTTSSSCCCCCEEEEEEEEEEEESCEEECCS---SCCEEEE-SCEEEEEESCEEE
T ss_pred             eeEEEEecCCC-eEeCCchhhhhcccCCCCCCCCeEEEEEecCCCEEeceEEEcCC---ceEEEEe-cccEEEEEEEEEe
Confidence            78899888643 677643                  78888999999999999864   3567886 8999999999985


Q ss_pred             C---------CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEceeecCCCCCcc-ee------e
Q 022635          104 D---------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHP-RL------R  167 (294)
Q Consensus       104 ~---------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P-~~------r  167 (294)
                      .         ..|| ||+ ..+++|+|++|.|...+-+.-+....        ++++.++++.....-.- .+      .
T Consensus       147 ~~~~~~~~~~NtDG-idi-~~s~nV~I~n~~i~~gDDcIaiks~~--------ni~i~n~~c~~ghG~sigslG~~~~~~  216 (339)
T d1ia5a_         147 NSDGDDNGGHNTDA-FDI-GTSTYVTISGATVYNQDDCVAVNSGE--------NIYFSGGYCSGGHGLSIGSVGGRSDNT  216 (339)
T ss_dssp             CGGGTTTTCCSCCS-EEE-ESCEEEEEESCEEECSSCSEEESSEE--------EEEEESCEEESSSCEEEEEECSSSCCE
T ss_pred             cccCCccCCCCCCc-ccc-CCCCeEEEeeeEEEcCCCeEEecCcc--------EEEEEEeEEeccccceecccccCcccc
Confidence            3         3699 899 57999999999999888887776532        67888877765432111 01      1


Q ss_pred             cCeEEEEcceEeCccceeEEe----c---CCceEEEEceEEEcC
Q 022635          168 FGKVHLYNNYTRNWGIYAVCA----S---VESQIYSQCNIYEAG  204 (294)
Q Consensus       168 ~g~~h~~NN~~~n~~~~~~~~----~---~~~~v~~e~N~f~~g  204 (294)
                      .-.+++.|+.+.+.. +++..    +   .-..|.+|+-.+++.
T Consensus       217 v~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nV~f~ni~~~~v  259 (339)
T d1ia5a_         217 VKNVTFVDSTIINSD-NGVRIKTNIDTTGSVSDVTYKDITLTSI  259 (339)
T ss_dssp             EEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEEEEEEEEEE
T ss_pred             EEEEEEECCcccCCc-ceeEEeeeCCCCEEEEEEEEEEEEEecc
Confidence            124678888887753 34422    1   113556666666654

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=98.26  E-value=7.1e-06  Score=75.01  Aligned_cols=101  Identities=21%  Similarity=0.379  Sum_probs=72.8

Q ss_pred             EEEeeeccEEEEeeEEEcCC-------------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEE
Q 022635           60 LRLKECEHVIICNLEFEGGR-------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF  126 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~-------------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f  126 (294)
                      |.+..++||.|+||+|+...             ....|||.+. ++++|+|++|.|..+.|. +.+| ...+|+|++|.|
T Consensus       130 ~~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~-~s~nv~I~n~~i~~gDD~-iaik-~~~ni~i~n~~~  206 (349)
T d1hg8a_         130 FDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDIS-SSDHVTLDNNHVYNQDDC-VAVT-SGTNIVVSNMYC  206 (349)
T ss_dssp             EEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEE-SCEEEEEEEEEEECSSCS-EEES-SEEEEEEEEEEE
T ss_pred             EEEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeC-CCCeEEEEeeeecCCCCc-eEec-cccceEEEEEEE
Confidence            45557889999999997531             2457999997 899999999999987776 7785 678999999999


Q ss_pred             ee-cCeee-EecCCCCCCCCcceEEEEEceeecCCCCCcceee
Q 022635          127 TQ-HDKTM-LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLR  167 (294)
Q Consensus       127 ~~-h~~~~-liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r  167 (294)
                      .. |..+. -+|....   ..-.+|++.++.+.++. |..|++
T Consensus       207 ~~ghg~sigs~G~~~~---~~v~nV~v~n~~~~~~~-~g~rIK  245 (349)
T d1hg8a_         207 SGGHGLSIGSVGGKSD---NVVDGVQFLSSQVVNSQ-NGCRIK  245 (349)
T ss_dssp             ESSCCEEEEEESSSSC---CEEEEEEEEEEEEEEEE-EEEEEE
T ss_pred             eCCcccccccCCCccc---ccEEEEEEEcceecCCc-ceEEEE
Confidence            85 44433 3565421   12347888888886543 445554

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=98.21  E-value=5.9e-05  Score=68.68  Aligned_cols=161  Identities=18%  Similarity=0.207  Sum_probs=108.3

Q ss_pred             ceEEEeCc-------eeEec-cCeEEEeeccceEEEcCC---------------------EEEeeeccEEEEeeEEEcCC
Q 022635           29 SGTIHLSS-------YLSVS-SYKTIDGRGQRIKLTGKG---------------------LRLKECEHVIICNLEFEGGR   79 (294)
Q Consensus        29 ~G~I~l~~-------~l~v~-sn~TI~G~g~g~~i~g~g---------------------l~i~~~~NVIirnl~i~~~~   79 (294)
                      +|.+.+..       .+.+. +|++|.|.|.+ +|.|.|                     |.+..++|+.|++|+++...
T Consensus        48 ~g~~~~~~~~~~~~~~~~~~~~ni~I~G~G~g-~IDG~G~~ww~~~~~~~~~~~~p~p~~i~~~~~~nv~i~~i~l~nsp  126 (349)
T d1hg8a_          48 KGTTTFATTADNDFNPIVISGSNITITGASGH-VIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNSKITNLNIQNWP  126 (349)
T ss_dssp             CSEEEECCCCCTTCCSEEEEEESCEEEECTTC-EEECCGGGTCCSCTTCTTSCCCCSEEEEEEEEESSEEEESCEEECCS
T ss_pred             EeeEEeeccccccCCeEEEeeeeEEEEecCCC-EEeCCChHHhcccccCCCCCCCCcceEEEEeccCCeEEEeeEEeCCC
Confidence            56666543       13343 68888887643 677643                     44567999999999999864


Q ss_pred             CCCCCceEEcCCCceEEEEceeecC-----------------CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCC
Q 022635           80 GHDVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV  142 (294)
Q Consensus        80 ~~~~D~i~i~~~~~~vwIDHcs~s~-----------------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~  142 (294)
                         .-.+.+. .+++|+|+++++..                 ..|| ||+ ..+++|+|++|.|...+-+.-+...    
T Consensus       127 ---~w~~~~~-~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDG-iDi-~~s~nv~I~n~~i~~gDD~iaik~~----  196 (349)
T d1hg8a_         127 ---VHCFDIT-GSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDG-FDI-SSSDHVTLDNNHVYNQDDCVAVTSG----  196 (349)
T ss_dssp             ---SEEEEEE-SCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCS-EEE-ESCEEEEEEEEEEECSSCSEEESSE----
T ss_pred             ---ceEEEEe-ccceEEEEEEEEECCCcccccccccCccccCCCCe-Eee-CCCCeEEEEeeeecCCCCceEeccc----
Confidence               3457786 89999999999843                 4699 799 4799999999999988877777643    


Q ss_pred             CCcceEEEEEceeecCCCCCcc-ee------ecCeEEEEcceEeCccceeEEe-------cCCceEEEEceEEEcCC
Q 022635          143 GDRCIRVTIHHCLFDGTRQRHP-RL------RFGKVHLYNNYTRNWGIYAVCA-------SVESQIYSQCNIYEAGQ  205 (294)
Q Consensus       143 ~d~~~~vT~hhN~f~~~~~R~P-~~------r~g~~h~~NN~~~n~~~~~~~~-------~~~~~v~~e~N~f~~g~  205 (294)
                          .++++.+|+|.+...-.- ++      ..-.+++.|+.+.+.. +++..       +.-..|.+|+-.+++..
T Consensus       197 ----~ni~i~n~~~~~ghg~sigs~G~~~~~~v~nV~v~n~~~~~~~-~g~rIKs~~g~gG~v~nI~~~ni~~~~v~  268 (349)
T d1hg8a_         197 ----TNIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQFLSSQVVNSQ-NGCRIKSNSGATGTINNVTYQNIALTNIS  268 (349)
T ss_dssp             ----EEEEEEEEEEESSCCEEEEEESSSSCCEEEEEEEEEEEEEEEE-EEEEEEEETTCCEEEEEEEEEEEEEEEEE
T ss_pred             ----cceEEEEEEEeCCcccccccCCCcccccEEEEEEEcceecCCc-ceEEEEEEcCCCccEEEeEEEEEEEcCcc
Confidence                278999988865432110 01      0124678888877643 23221       11235666777776553

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=98.09  E-value=3.2e-05  Score=70.29  Aligned_cols=95  Identities=19%  Similarity=0.384  Sum_probs=66.1

Q ss_pred             eccEEEEeeEEEcCC-----CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEee-cCeee-EecC
Q 022635           65 CEHVIICNLEFEGGR-----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQ-HDKTM-LIGA  137 (294)
Q Consensus        65 ~~NVIirnl~i~~~~-----~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~-h~~~~-liG~  137 (294)
                      ++||.|+||+|....     ....|||.+. ++++|.|..|.+..+. .++.++ ...+++|++|.+.. |.-++ -+|.
T Consensus       130 ~~nv~i~nv~I~~~~~~~~~~~NtDGidi~-~s~nv~I~n~~i~~gD-DcIaik-~g~ni~i~n~~c~~~~g~sigslG~  206 (336)
T d1nhca_         130 ATNVHLNDFTIDNSDGDDNGGHNTDGFDIS-ESTGVYISGATVKNQD-DCIAIN-SGESISFTGGTCSGGHGLSIGSVGG  206 (336)
T ss_dssp             EEEEEEESCEEECTTHHHHTCCSCCSEEEC-SCEEEEEESCEEESSS-EEEEES-SEEEEEEESCEEESSSEEEEEEESS
T ss_pred             eeEEEEEEEEEECcCCCccccCCCceEEcC-CccCEeEecceEeecC-CcEEee-ccceEEEEEeeecccccceeeeccc
Confidence            567777777777542     2457999997 8999999999998554 458885 56899999999874 33222 3565


Q ss_pred             CCCCCCCcceEEEEEceeecCCCCCccee
Q 022635          138 DPSHVGDRCIRVTIHHCLFDGTRQRHPRL  166 (294)
Q Consensus       138 ~d~~~~d~~~~vT~hhN~f~~~~~R~P~~  166 (294)
                      ...   ....+|+|.++.|.++. +.-|+
T Consensus       207 ~~~---~~v~nV~v~n~~~~~t~-~G~rI  231 (336)
T d1nhca_         207 RDD---NTVKNVTISDSTVSNSA-NGVRI  231 (336)
T ss_dssp             SSC---CEEEEEEEEEEEEESCS-EEEEE
T ss_pred             ccc---ccEEEEEEEeceeeCCC-ceeEE
Confidence            421   22358999999887764 23344

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=98.01  E-value=0.0002  Score=66.71  Aligned_cols=106  Identities=15%  Similarity=0.182  Sum_probs=75.1

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC----CCCCeeEeeeCCccEEEEccEEeecCeeeEe
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD----YDDGLIDITRQSTDITVSRCYFTQHDKTMLI  135 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~li  135 (294)
                      |++.+++|+.|++|+++....   -.|.+. +++++.|+++++..    ..|| ||+. . .+|+|++|.|...+-+.-+
T Consensus       130 l~~~~~~n~~i~git~~nsp~---~~i~i~-~c~~v~i~nv~I~~~~~~NtDG-Idi~-~-snv~I~n~~i~~gDDcIai  202 (422)
T d1rmga_         130 LRLTDVTHFSVHDIILVDAPA---FHFTMD-TCSDGEVYNMAIRGGNEGGLDG-IDVW-G-SNIWVHDVEVTNKDECVTV  202 (422)
T ss_dssp             EEEEEEEEEEEEEEEEECCSS---CSEEEE-EEEEEEEEEEEEECCSSTTCCS-EEEE-E-EEEEEEEEEEESSSEEEEE
T ss_pred             EEEEeeeeeEEECcEecCCCc---eEEEEe-ccccEEEEeeEEcCCCCCccce-Eeec-c-cEEEEEeeEEEcCCCcccc
Confidence            777889999999999998643   468886 89999999999864    3588 7884 3 4899999999988877766


Q ss_pred             cCCCCCCCCcceEEEEEceeecCCC-------CCcceeecCeEEEEcceEeCc
Q 022635          136 GADPSHVGDRCIRVTIHHCLFDGTR-------QRHPRLRFGKVHLYNNYTRNW  181 (294)
Q Consensus       136 G~~d~~~~d~~~~vT~hhN~f~~~~-------~R~P~~r~g~~h~~NN~~~n~  181 (294)
                      .+..       .+|++.++++....       .+.+.++  .+.+.|.++.+.
T Consensus       203 ks~s-------~nI~i~n~~c~~g~GisiGs~g~~~~V~--nV~v~n~~~~~s  246 (422)
T d1rmga_         203 KSPA-------NNILVESIYCNWSGGCAMGSLGADTDVT--DIVYRNVYTWSS  246 (422)
T ss_dssp             EEEE-------EEEEEEEEEEESSSEEEEEEECTTEEEE--EEEEEEEEEESS
T ss_pred             CCCC-------ccEEEEeeEEccccceeEeeccCCCCEE--EEEEEeEEEeCC
Confidence            5431       26777776654322       1222222  356666666553

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=97.72  E-value=0.00049  Score=62.17  Aligned_cols=130  Identities=13%  Similarity=0.195  Sum_probs=89.0

Q ss_pred             EEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC---------CCCCeeEeeeCCccEEEEccEEeecC
Q 022635           60 LRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD---------YDDGLIDITRQSTDITVSRCYFTQHD  130 (294)
Q Consensus        60 l~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~---------~~Dg~id~~~~s~~vTiS~~~f~~h~  130 (294)
                      |.+.+++||.|++|+|+....+   .|.+.  +++|.|++.++..         ..|| ||+ ..+++|+|++|.|...+
T Consensus       103 i~~~~~~nv~i~giti~nsp~~---~i~i~--~~nv~i~nv~I~~~~~~~~~~~NtDG-idi-~~s~nv~I~n~~i~~gD  175 (336)
T d1nhca_         103 MYIHDVEDSTFKGINIKNTPVQ---AISVQ--ATNVHLNDFTIDNSDGDDNGGHNTDG-FDI-SESTGVYISGATVKNQD  175 (336)
T ss_dssp             EEEEEEEEEEEESCEEECCSSC---CEEEE--EEEEEEESCEEECTTHHHHTCCSCCS-EEE-CSCEEEEEESCEEESSS
T ss_pred             EEEeccCCcEEEeEEEEcCCce---EEEEe--eeEEEEEEEEEECcCCCccccCCCce-EEc-CCccCEeEecceEeecC
Confidence            7888999999999999986544   56664  6899999999863         4699 799 47999999999999888


Q ss_pred             eeeEecCCCCCCCCcceEEEEEceeecCCCCC-ccee------ecCeEEEEcceEeCccceeEEe----cCC---ceEEE
Q 022635          131 KTMLIGADPSHVGDRCIRVTIHHCLFDGTRQR-HPRL------RFGKVHLYNNYTRNWGIYAVCA----SVE---SQIYS  196 (294)
Q Consensus       131 ~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R-~P~~------r~g~~h~~NN~~~n~~~~~~~~----~~~---~~v~~  196 (294)
                      -+.-+....        ++++.++.+....+- .-++      ..-.+++.|+.+.+.. +++..    +.+   ..|.+
T Consensus       176 DcIaik~g~--------ni~i~n~~c~~~~g~sigslG~~~~~~v~nV~v~n~~~~~t~-~G~rIKt~~~~~G~v~nV~f  246 (336)
T d1nhca_         176 DCIAINSGE--------SISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSA-NGVRIKTIYKETGDVSEITY  246 (336)
T ss_dssp             EEEEESSEE--------EEEEESCEEESSSEEEEEEESSSSCCEEEEEEEEEEEEESCS-EEEEEEEETTCCCEEEEEEE
T ss_pred             CcEEeeccc--------eEEEEEeeecccccceeeeccccccccEEEEEEEeceeeCCC-ceeEEEEecCCCceEeeEEE
Confidence            887776542        577777665432211 1111      1125788888887753 34321    111   35566


Q ss_pred             EceEEEcCC
Q 022635          197 QCNIYEAGQ  205 (294)
Q Consensus       197 e~N~f~~g~  205 (294)
                      ++..+++..
T Consensus       247 ~ni~~~~V~  255 (336)
T d1nhca_         247 SNIQLSGIT  255 (336)
T ss_dssp             EEEEEEEES
T ss_pred             EeEEEeccc
Confidence            666666543

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=97.53  E-value=0.00033  Score=63.33  Aligned_cols=93  Identities=17%  Similarity=0.353  Sum_probs=66.4

Q ss_pred             EEEeeec-cEEEEeeEEEcCC------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCee
Q 022635           60 LRLKECE-HVIICNLEFEGGR------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT  132 (294)
Q Consensus        60 l~i~~~~-NVIirnl~i~~~~------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~  132 (294)
                      +.+..++ ||.|+||+|....      ....|||.+.  +++|+|.+|.+..+.| ++.++ ...||+|++|.+.. ..+
T Consensus       120 ~~i~~~~~~v~i~nv~I~~~~i~~~~~~~NTDGidi~--s~nV~I~n~~i~~gDD-cIaik-~g~ni~i~n~~c~~-ghG  194 (333)
T d1k5ca_         120 ISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDVS--ANNVTIQNCIVKNQDD-CIAIN-DGNNIRFENNQCSG-GHG  194 (333)
T ss_dssp             EEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEEE--CSSEEEESCEEESSSC-SEEEE-EEEEEEEESCEEES-SCC
T ss_pred             EEEecccCcEEEEeEEEEeeecCCCccCCCcceEeEe--cceEEEEecEEecCCC-EEEEc-CccEEEEEEEEECC-CCc
Confidence            3343343 7888888887532      2457999994  6899999999988766 58886 56899999999974 236


Q ss_pred             eEecCCCCCCCCcceEEEEEceeecCC
Q 022635          133 MLIGADPSHVGDRCIRVTIHHCLFDGT  159 (294)
Q Consensus       133 ~liG~~d~~~~d~~~~vT~hhN~f~~~  159 (294)
                      +-+|+....  ....+|++.++.|.++
T Consensus       195 isiGS~g~~--~~V~nV~v~n~~~~~t  219 (333)
T d1k5ca_         195 ISIGSIATG--KHVSNVVIKGNTVTRS  219 (333)
T ss_dssp             EEEEEECTT--CEEEEEEEESCEEEEE
T ss_pred             eeeecccCC--CcEEEEEEEEeEEeCC
Confidence            777764211  1124899999988765

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=97.53  E-value=0.00072  Score=61.49  Aligned_cols=114  Identities=14%  Similarity=0.168  Sum_probs=80.4

Q ss_pred             CCceEEcCCCceEEEEceeecCC-------CCCeeEeeeCCccEEEEccEEeecCeeeE-ecCCCCCCCCcceEEEEEce
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRDY-------DDGLIDITRQSTDITVSRCYFTQHDKTML-IGADPSHVGDRCIRVTIHHC  154 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~~-------~Dg~id~~~~s~~vTiS~~~f~~h~~~~l-iG~~d~~~~d~~~~vT~hhN  154 (294)
                      +.++.+..+++||+|-|..|...       .|+ |.+ .++++|-|-+|.|+......+ .+...+      -+||+.+|
T Consensus       123 g~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~Da-I~i-~~s~nVwIDH~s~s~~~d~~~~~~~~~s------~~vTis~~  194 (359)
T d1idka_         123 GKGLRIVSGAENIIIQNIAVTDINPKYVWGGDA-ITL-DDCDLVWIDHVTTARIGRQHYVLGTSAD------NRVSLTNN  194 (359)
T ss_dssp             SCCEEECTTCEEEEEESCEEEEECTTEETSCCS-EEE-CSCEEEEEESCEEEEESSCSEEECCCTT------CEEEEESC
T ss_pred             cCceEEEecCceEEEECcEEecCCCCCCCCCCe-EEe-eCCccEEEEeeeeccCCCCceeeeccCC------Cceeeece
Confidence            34566643689999999999643       466 677 479999999999986433333 332221      27999999


Q ss_pred             eecCCCCCcceee----------c--CeEEEEcceEeCccceeEEecCCceEEEEceEEEcC
Q 022635          155 LFDGTRQRHPRLR----------F--GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG  204 (294)
Q Consensus       155 ~f~~~~~R~P~~r----------~--g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g  204 (294)
                      +|...........          .  ..+.+.+|+|.+...+.-..+.+.++.+.||||.+.
T Consensus       195 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~vT~hhN~f~~~~~R~P~~r~g~~~hv~NN~~~n~  256 (359)
T d1idka_         195 YIDGVSDYSATCDGYHYWAIYLDGDADLVTMKGNYIYHTSGRSPKVQDNTLLHAVNNYWYDI  256 (359)
T ss_dssp             EEECBCSCBTTSSSBBSCCEEECCSSCEEEEESCEEESBCSCTTEECTTCEEEEESCEEEEE
T ss_pred             eeeccccccccccccccCCceecCCCccEEEEeeEEccCCCCCceecccceEEEECcEEECc
Confidence            9976654443321          1  257899999998776666666677889999999864

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=97.42  E-value=0.0024  Score=57.11  Aligned_cols=119  Identities=15%  Similarity=0.280  Sum_probs=83.5

Q ss_pred             chHHHHhhc----CCCeEEEEEeceEEEeCceeEec---cCeEEEeeccceEE-EcC-------------CEEEeeeccE
Q 022635           10 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS---SYKTIDGRGQRIKL-TGK-------------GLRLKECEHV   68 (294)
Q Consensus        10 GsLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~---sn~TI~G~g~g~~i-~g~-------------gl~i~~~~NV   68 (294)
                      -++++||++    ...+++++-..|+.+  +.|.|.   +++||.|.|..-++ ...             .+.+. ++++
T Consensus        20 ~TIq~AIda~p~~~~~~~~I~I~~G~Y~--E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~~~t~~sat~~v~-~~~f   96 (319)
T d1gq8a_          20 KTVSEAVAAAPEDSKTRYVIRIKAGVYR--ENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGSTTFNSATVAAV-GAGF   96 (319)
T ss_dssp             SSHHHHHHHSCSSCSSCEEEEECSEEEE--CCEEECTTCCSEEEEESCTTTEEEEECCCTTTTCCTGGGCSEEEC-STTC
T ss_pred             cCHHHHHhhCccCCCCcEEEEEcCceEE--EEEEECCCCCeEEEEEcCCCCcEEEecccccCCCccccccceeee-cCCe
Confidence            467799976    234556665799999  888884   68999999875443 321             25665 8999


Q ss_pred             EEEeeEEEcCCC---CCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEeecCeeeEecC
Q 022635           69 IICNLEFEGGRG---HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGA  137 (294)
Q Consensus        69 Iirnl~i~~~~~---~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~  137 (294)
                      +++||+|++..+   ...-|+.+.  ++++.+.+|.|....|=|++-   ...--+.+|.|... --+++|.
T Consensus        97 ~a~nitf~Nt~g~~~~QAvAl~v~--gd~~~fy~c~f~G~QDTL~~~---~gr~yf~~c~IeG~-vDFIfG~  162 (319)
T d1gq8a_          97 LARDITFQNTAGAAKHQAVALRVG--SDLSAFYRCDILAYQDSLYVH---SNRQFFINCFIAGT-VDFIFGN  162 (319)
T ss_dssp             EEEEEEEEECCCGGGCCCCSEEEC--CTTEEEEEEEEECSTTCEEEC---SSEEEEESCEEEES-SSCEEES
T ss_pred             EEEeeEEEeCCCCCCCcEEEEEec--CcceEEEcceecccCCeeEEC---CCCEEEEeeEEEee-ccEEecC
Confidence            999999998543   345677774  678999999999999998753   23456677777621 1245554

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=97.41  E-value=0.0029  Score=57.38  Aligned_cols=139  Identities=18%  Similarity=0.256  Sum_probs=90.0

Q ss_pred             CCceEEcCCCceEEEEceeecCC-------CCCeeEeeeCCccEEEEccEEeec-CeeeEecCCCCCCCCcceEEEEEce
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRDY-------DDGLIDITRQSTDITVSRCYFTQH-DKTMLIGADPSHVGDRCIRVTIHHC  154 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~~-------~Dg~id~~~~s~~vTiS~~~f~~h-~~~~liG~~d~~~~d~~~~vT~hhN  154 (294)
                      +.++.+..+++||+|-|..|...       .|. |.+ .++++|=|=+|.|+.- +...+.....      .-.||+..|
T Consensus       123 g~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Da-i~i-~~s~nvwIDH~s~s~~~d~~~~~~~~~------s~~vTvs~~  194 (359)
T d1qcxa_         123 GKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDA-ITV-DDSDLVWIDHVTTARIGRQHIVLGTSA------DNRVTISYS  194 (359)
T ss_dssp             SCCEEEETTCCCEEEESCEEEEECTTEETSCCS-EEE-ESCCCEEEESCEEEEESSCSEEECSSC------CEEEEEESC
T ss_pred             ccceEEEeCCccEEEeCeEEecCCCCCCCCCCe-EEe-eCCCCEEEEeeeccccCCCceEeeccC------CCceEeecc
Confidence            34555533789999999999753       354 677 4789999999999742 2233333221      127999999


Q ss_pred             eecCCCCCcce----------eecC--eEEEEcceEeCccceeEEecCCceEEEEceEEEcCCccceeeeehhccccccc
Q 022635          155 LFDGTRQRHPR----------LRFG--KVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLE  222 (294)
Q Consensus       155 ~f~~~~~R~P~----------~r~g--~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~~~~~~~~~~~~~~~~~~  222 (294)
                      +|.........          ...+  ++.+.+|+|.+...+.-..+.+..+.+.||||.+.....    +       ..
T Consensus       195 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~vT~hhN~~~~~~~R~P~~r~g~~~hv~NN~~~n~~~~~----~-------~~  263 (359)
T d1qcxa_         195 LIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNLFHNFDGHA----F-------EI  263 (359)
T ss_dssp             EEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESBCSCTTEECSSEEEEEESCEEEEEEEEE----E-------EE
T ss_pred             EeccCccccccccccCCCCceecCCCceEEEEeeeccCCCCCCccccCCceEEEEeeEEeCcCCEE----E-------ec
Confidence            99765544322          2122  478999999987766555555666889999998643211    0       11


Q ss_pred             CCcceEEEeCCeEeeCce
Q 022635          223 AKSGLIRSEGDIFLKGAQ  240 (294)
Q Consensus       223 ~~~G~~~~~gn~~~~g~~  240 (294)
                      ...+.+..++|+|.++..
T Consensus       264 ~~~~~v~~e~N~F~~~~~  281 (359)
T d1qcxa_         264 GTGGYVLAEGNVFQDVNV  281 (359)
T ss_dssp             CTTEEEEEESCEEEEEEE
T ss_pred             CCceEEEEEeeEEECCCC
Confidence            233457778999987543

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=97.26  E-value=0.0066  Score=54.71  Aligned_cols=150  Identities=18%  Similarity=0.096  Sum_probs=84.2

Q ss_pred             CCceEEcCCCceEEEEceeecCCC----------------CCeeEeeeCCccEEEEccEEeecC-eeeEe-cCC------
Q 022635           83 VDGIQIKPNSRHIWIDRCSLRDYD----------------DGLIDITRQSTDITVSRCYFTQHD-KTMLI-GAD------  138 (294)
Q Consensus        83 ~D~i~i~~~~~~vwIDHcs~s~~~----------------Dg~id~~~~s~~vTiS~~~f~~h~-~~~li-G~~------  138 (294)
                      +-+|.|. +++||+|-|..|....                |. |.+ .++++|=|=+|-|+... ...-+ +..      
T Consensus        95 g~gl~i~-~a~NVIirnl~ir~~~~~~~~~~~g~~~~~~~D~-i~~-~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~  171 (355)
T d1pcla_          95 NGSLVIK-GVKNVILRNLYIETPVDVAPHYESGDGWNAEWDA-AVI-DNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQ  171 (355)
T ss_pred             cCEEEEE-ccccEEEEeeEeecCcccCCccccCCCcCccCce-EEe-cCCccEEEECcccccCccccccccccccccccc
Confidence            3567775 7899999999996432                33 555 35777777777776311 00000 000      


Q ss_pred             -CCC--CCCcceEEEEEceeecCCCCCcce--------eec--CeEEEEcceEeCccceeEEecCCceEEEEceEEEcCC
Q 022635          139 -PSH--VGDRCIRVTIHHCLFDGTRQRHPR--------LRF--GKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQ  205 (294)
Q Consensus       139 -d~~--~~d~~~~vT~hhN~f~~~~~R~P~--------~r~--g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~~g~  205 (294)
                       |..  .....-.||+..|.|.+...-+.-        ...  ..+.+.+|||.+...+.-..+ ..++.+.||||.+..
T Consensus       172 ~dg~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~~~~vT~hhNl~~~~~~R~P~~r-~G~~hv~NN~~~n~~  250 (355)
T d1pcla_         172 HDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRVTERAPRVR-FGSIHAYNNVYLGDV  250 (355)
T ss_pred             ccceeeeccceeeEEEeeeecCCcccceeecCCCCCccccCCcceEEEecccccCCcccCCccc-ccEEEEECcEEECCC
Confidence             000  000113799999999764322211        111  246788999998765543333 346889999998765


Q ss_pred             ccceeeeehhcccccccCCcceEEEeCCeEeeCce
Q 022635          206 KKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQ  240 (294)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~~g~~  240 (294)
                      .......+.    .......+.+...+|+|..+..
T Consensus       251 ~~~~~~~~y----~~~~~~~~~v~~e~NyF~~~~~  281 (355)
T d1pcla_         251 KHSVYPYLY----SFGLGTSGSILSESNSFTLSNL  281 (355)
T ss_pred             Cccccccee----eeccCcCceEEEeCCEEECCCC
Confidence            432211100    0112234567788999987654

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=97.25  E-value=0.0023  Score=57.78  Aligned_cols=113  Identities=12%  Similarity=0.014  Sum_probs=77.6

Q ss_pred             cCCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEe------eeCCccEEEEccEEeecC
Q 022635           57 GKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDI------TRQSTDITVSRCYFTQHD  130 (294)
Q Consensus        57 g~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~------~~~s~~vTiS~~~f~~h~  130 (294)
                      +.+|.|..++||+|.|..|...   .+..|.+..++++|-|..|.|+......+.-      ..+..+||+-+|+|.++.
T Consensus       150 gDai~i~~s~nvwIDH~s~s~~---~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~  226 (346)
T d1pxza_         150 GDAITMRNVTNAWIDHNSLSDC---SDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNA  226 (346)
T ss_dssp             CCSEEEESCEEEEEESCEEECC---SSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSE
T ss_pred             CceeeeecCceEEEECcEeecc---ccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCc
Confidence            3568888899999999999954   2344666546899999999997643222211      012246999999997542


Q ss_pred             -eee-EecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCc
Q 022635          131 -KTM-LIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNW  181 (294)
Q Consensus       131 -~~~-liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~  181 (294)
                       ..+ +....         .+-+.+|+|.+.....-..+. +++.+.||||.+.
T Consensus       227 ~r~~p~~r~g---------~~hv~NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~  271 (346)
T d1pxza_         227 GQRMPRARYG---------LVHVANNNYDPWNIYAIGGSSNPTILSEGNSFTAP  271 (346)
T ss_dssp             EECTTEEESS---------EEEEESCEECCCSSCSEEEESCCEEEEESCEEECC
T ss_pred             ccCCCccccc---------eEEEECcEeecCccEEEeccCceEEEEEeeEEECC
Confidence             222 22211         678889999988776655554 5789999999864

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.14  E-value=0.011  Score=53.07  Aligned_cols=121  Identities=11%  Similarity=0.241  Sum_probs=84.2

Q ss_pred             chHHHHhhc----CCCeEEEEEeceEEEeCceeEec-cCeEEEeeccceEEE-c-------------------CCEEEee
Q 022635           10 GSLREGCRR----REPLWIVFEVSGTIHLSSYLSVS-SYKTIDGRGQRIKLT-G-------------------KGLRLKE   64 (294)
Q Consensus        10 GsLr~a~~~----~~P~~Ivf~v~G~I~l~~~l~v~-sn~TI~G~g~g~~i~-g-------------------~gl~i~~   64 (294)
                      -++++||++    ..|+ ++|-..|+.+  ++|.|. +++||+|+|..-++. +                   ..+.+. 
T Consensus        19 ~TIq~AI~a~p~~~~~~-vI~I~~G~Y~--E~V~I~k~~itl~G~~~~~tiI~~~~~~~~~~~~~~~~~t~~sat~~v~-   94 (342)
T d1qjva_          19 KTIADAIASAPAGSTPF-VILIKNGVYN--ERLTITRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITIS-   94 (342)
T ss_dssp             SSHHHHHHTSCSSSSCE-EEEECSEEEC--CCEEECSTTEEEEESCTTTEEEEECCCTTCBCTTSCBCHHHHTCSEEEC-
T ss_pred             hhHHHHHHhCccCCceE-EEEEcCeEEE--EEEEEcCCCeEEEEcCCCCcEEEecccccccccCCCcccccceeeEEEe-
Confidence            479999976    2344 4555689998  788886 789999997644442 2                   125664 


Q ss_pred             eccEEEEeeEEEcCC-----------------CCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEEe
Q 022635           65 CEHVIICNLEFEGGR-----------------GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFT  127 (294)
Q Consensus        65 ~~NVIirnl~i~~~~-----------------~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f~  127 (294)
                      +++++++||+|++..                 ....-|+.+...++++-+-+|.|.-..|=|++-   ...--+.+|.|.
T Consensus        95 a~~f~a~nitf~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~~~gD~~~fy~C~f~G~QDTL~~~---~gr~y~~~c~Ie  171 (342)
T d1qjva_          95 AKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVS---GGRSFFSDCRIS  171 (342)
T ss_dssp             SSSCEEEEEEEEECCCHHHHHTSCTTCTTCCSCCCCCSEEECTTCCSEEEEEEEEECSTTCEEEC---SSEEEEESCEEE
T ss_pred             eCCeEEEeeEEecCCccccccccccccccccCCCceEEEEeecCCCceeEEeeeeccccceeEeC---CCCEEEEeeEEe
Confidence            899999999999742                 123457776435788999999999999987653   234566777775


Q ss_pred             ecCeeeEecCC
Q 022635          128 QHDKTMLIGAD  138 (294)
Q Consensus       128 ~h~~~~liG~~  138 (294)
                      . .--+++|..
T Consensus       172 G-~vDFIfG~g  181 (342)
T d1qjva_         172 G-TVDFIFGDG  181 (342)
T ss_dssp             E-SEEEEEESS
T ss_pred             c-cCcEEecCc
Confidence            3 244666653

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.11  E-value=0.009  Score=52.46  Aligned_cols=112  Identities=11%  Similarity=0.078  Sum_probs=63.9

Q ss_pred             CchHHHHhhcCCCeEEEEEeceEEEeCc------eeEec------cCeEEEeeccce-EEEcC-----------CEEEee
Q 022635            9 PGSLREGCRRREPLWIVFEVSGTIHLSS------YLSVS------SYKTIDGRGQRI-KLTGK-----------GLRLKE   64 (294)
Q Consensus         9 ~GsLr~a~~~~~P~~Ivf~v~G~I~l~~------~l~v~------sn~TI~G~g~g~-~i~g~-----------gl~i~~   64 (294)
                      ..+|++|++...|...|+--.|+.....      .+.+.      ..+||.+.+.+. .|.+.           ++.+. 
T Consensus        35 ~~tIq~Ai~~a~~GDtI~v~~GtY~~~~~~~~~~~~~~~~~G~~~~~i~i~~~~~~~~vi~~~~~~~~~~~~~~~~~i~-  113 (400)
T d1ru4a_          35 PMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVT-  113 (400)
T ss_dssp             CBCHHHHHHHCCTTCEEEECSEEEECCCBTTBCCCEEECCCCBTTBCEEEEEGGGCCEEEECCCCTTCCCTTCCSEEEC-
T ss_pred             HHHHHHHHHhCCCcCEEEEcCceeecceeecCceEEEEecCCCCCCeEEEecCCCCeeEEeCCccccccccccceEEEe-
Confidence            3679999999888777765689987432      12221      245777764433 33322           25554 


Q ss_pred             eccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCCccEEEEccEE
Q 022635           65 CEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF  126 (294)
Q Consensus        65 ~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s~~vTiS~~~f  126 (294)
                      .++++|+++.++...   ..++.+  .+.+..|++|.+.......+.+........+.+|.+
T Consensus       114 ~~~~~i~~~~~~~~~---~~~~~~--~~~~~~i~n~~i~~~~~~g~~~~~~~~~~~~~~~~~  170 (400)
T d1ru4a_         114 GDYWYFKGVEVTRAG---YQGAYV--IGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDA  170 (400)
T ss_dssp             SSCEEEESEEEESCS---SCSEEE--CSSSCEEESCEEESCSSCSEEECTTCCSCEEESCEE
T ss_pred             cCcEEEecceeecCc---ceeeee--cccccccccceEecCCcceEEEeccccccEEEEeeE
Confidence            789999999999753   233333  234555666666654444344433333334444433

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=97.04  E-value=0.002  Score=58.58  Aligned_cols=81  Identities=14%  Similarity=0.064  Sum_probs=60.0

Q ss_pred             cCeEEEeeccceEEEcC---CEEEeeeccEEEEeeEEEcC--CCCCCCceEEcCCCceEEEEceeecCCCCCeeEeeeCC
Q 022635           42 SYKTIDGRGQRIKLTGK---GLRLKECEHVIICNLEFEGG--RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQS  116 (294)
Q Consensus        42 sn~TI~G~g~g~~i~g~---gl~i~~~~NVIirnl~i~~~--~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~~~s  116 (294)
                      .|.+|.|    ++|...   .+.+..++||.+++++++..  .....|||.+   +++++|.+|.+..+.|. +.++  +
T Consensus       132 ~n~~i~g----iti~~s~~~~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~---~~~~~i~~~~~~~gDD~-i~~~--s  201 (373)
T d1ogmx2         132 QTWYCVG----PTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEI---YPNSVVHDVFWHVNDDA-IKIY--Y  201 (373)
T ss_dssp             EEEEEES----CEEECCSSCCEEECSSSCEEEEEEEEEEECCCSTTCCCCBC---CTTCEEEEEEEEESSCS-EECC--S
T ss_pred             eEEEEeC----EEEECCCeeEEEEccCCeEEEEEEEEEecCCCCCCCeeeec---cCCEEEEeeEEecCCCE-EEec--C
Confidence            4566665    366654   46777899999999999842  3456788765   57899999999865555 6774  7


Q ss_pred             ccEEEEccEEeecCee
Q 022635          117 TDITVSRCYFTQHDKT  132 (294)
Q Consensus       117 ~~vTiS~~~f~~h~~~  132 (294)
                      .+++|++|.|.....+
T Consensus       202 ~~i~v~n~~~~~~~~~  217 (373)
T d1ogmx2         202 SGASVSRATIWKCHND  217 (373)
T ss_dssp             TTCEEEEEEEEECSSS
T ss_pred             CCEEEEEEEEECCCce
Confidence            8999999999864433

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=97.03  E-value=0.0034  Score=56.66  Aligned_cols=140  Identities=14%  Similarity=0.098  Sum_probs=90.5

Q ss_pred             cCCEEEeeeccEEEEeeEEEcCCC---------CCCCc-eEEcCCCceEEEEceeecCCCCCeeEee---eCCccEEEEc
Q 022635           57 GKGLRLKECEHVIICNLEFEGGRG---------HDVDG-IQIKPNSRHIWIDRCSLRDYDDGLIDIT---RQSTDITVSR  123 (294)
Q Consensus        57 g~gl~i~~~~NVIirnl~i~~~~~---------~~~D~-i~i~~~~~~vwIDHcs~s~~~Dg~id~~---~~s~~vTiS~  123 (294)
                      +.+|.+..++||+|.|..|..+..         ...|+ +.+...+.+|=|-.|.|.....+.+...   ...++||+.+
T Consensus       130 ~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~n~~~~~~k~~l~g~~~~~~~~~vT~hh  209 (353)
T d1o88a_         130 GDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSSDTGRNITYHH  209 (353)
T ss_dssp             CCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEESCEEEEEEECCEESSSSSCCCCEEEEES
T ss_pred             CcEEEEecccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEECcccccccccceeCCccCcCCceEEEEe
Confidence            357899899999999999986531         11233 3343466777777777765443333221   1345899999


Q ss_pred             cEEeecCe-eeEecCCCCCCCCcceEEEEEceeecCCCCCcceeec-CeEEEEcceEeCcccee---EEecCCceEEEEc
Q 022635          124 CYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRF-GKVHLYNNYTRNWGIYA---VCASVESQIYSQC  198 (294)
Q Consensus       124 ~~f~~h~~-~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~P~~r~-g~~h~~NN~~~n~~~~~---~~~~~~~~v~~e~  198 (294)
                      |+|.++.. .=++...         .+-+.+|+|.+.....-..+. +.+.+.||||.+...-.   ........+...+
T Consensus       210 N~~~~~~~R~P~~~~g---------~~h~~NN~~~n~~~~~~~~~~~~~~~~e~N~f~~~~~p~~~~~~~~~~g~~~~~~  280 (353)
T d1o88a_         210 NYYNDVNARLPLQRGG---------LVHAYNNLYTNITGSGLNVRQNGQALIENNWFEKAINPVTSRYDGKNFGTWVLKG  280 (353)
T ss_dssp             CEEEEEEECSCEEESS---------EEEEESCEEEEESSCSEEEETTCEEEEESCEEEEEESSEEECSSSSSCCEEEEES
T ss_pred             eEEcCCccCCcceecc---------eEEEEEEEEecccceEEecCCCceEEEEeeEEecccCCccccccCCcceeEEECC
Confidence            99996432 2233321         577888999988776655554 57899999999754211   1223345677788


Q ss_pred             eEEEcCC
Q 022635          199 NIYEAGQ  205 (294)
Q Consensus       199 N~f~~g~  205 (294)
                      |+|....
T Consensus       281 n~~~~~~  287 (353)
T d1o88a_         281 NNITKPA  287 (353)
T ss_dssp             CSCCSTT
T ss_pred             Ceeeccc
Confidence            8887654

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.95  E-value=0.0034  Score=57.72  Aligned_cols=117  Identities=15%  Similarity=0.165  Sum_probs=75.3

Q ss_pred             cCCEEEeeeccEEEEeeEEEcCCC--------------CCCCceEEcCCCceEEEEceeecCCCCCeeEee-------eC
Q 022635           57 GKGLRLKECEHVIICNLEFEGGRG--------------HDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT-------RQ  115 (294)
Q Consensus        57 g~gl~i~~~~NVIirnl~i~~~~~--------------~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~-------~~  115 (294)
                      +..|.|.+++||+|.|..|..+..              ..+..+.|..++++|=|-+|-|......+|.-.       .+
T Consensus       183 ~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g  262 (399)
T d1bn8a_         183 YDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDG  262 (399)
T ss_dssp             CCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEECCCTTCGGGTT
T ss_pred             CceEEEecCccEEEECceeccCCcccccccccccccccccccceeecccceeEEeECccccCCcceeEecCCCCcccccC
Confidence            456888889999999999986531              113345565577889999999876433333211       12


Q ss_pred             CccEEEEccEEeecCe-eeEecCCCCCCCCcceEEEEEceeecCCCCCc--c-----eee-cCeEEEEcceEeCcc
Q 022635          116 STDITVSRCYFTQHDK-TMLIGADPSHVGDRCIRVTIHHCLFDGTRQRH--P-----RLR-FGKVHLYNNYTRNWG  182 (294)
Q Consensus       116 s~~vTiS~~~f~~h~~-~~liG~~d~~~~d~~~~vT~hhN~f~~~~~R~--P-----~~r-~g~~h~~NN~~~n~~  182 (294)
                      ...||+-+|+|.+..- .=++...         ++-+.+|+|.+.....  |     -.+ .+++-+.||||.+..
T Consensus       263 ~~~vT~hhN~f~~~~~R~Prvr~g---------~vHv~NNy~~n~~~~~~~~~~ya~~~~~~a~il~EgN~F~~~~  329 (399)
T d1bn8a_         263 KLKITLHHNRYKNIVQRAPRVRFG---------QVHVYNNYYEGSTSSSSYPFSYAWGIGKSSKIYAQNNVIDVPG  329 (399)
T ss_dssp             CCCEEEESCEEEEEEECSSEESSC---------EEEEESCEEECCTTCSSSCCCCSEEECTTCEEEEESCEEECTT
T ss_pred             CceEEEEeeEecCccccCcccccc---------EEEEEccEeECCCcccccccceeeccccCceEEEEeeEEECCC
Confidence            2379999999986432 1123221         5667789998765421  1     122 257889999998643

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=96.81  E-value=0.024  Score=51.06  Aligned_cols=151  Identities=17%  Similarity=0.179  Sum_probs=84.7

Q ss_pred             CCceEEc--CCCceEEEEceeecCCC----------------CCeeEeeeCCccEEEEccEEeecC-eeeEecC------
Q 022635           83 VDGIQIK--PNSRHIWIDRCSLRDYD----------------DGLIDITRQSTDITVSRCYFTQHD-KTMLIGA------  137 (294)
Q Consensus        83 ~D~i~i~--~~~~~vwIDHcs~s~~~----------------Dg~id~~~~s~~vTiS~~~f~~h~-~~~liG~------  137 (294)
                      ..++.|.  .+++||+|-|..|....                |. |.+..++++|=|=+|-|+... ....++.      
T Consensus       102 ~~gl~i~~~~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Da-i~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~  180 (361)
T d1pe9a_         102 NGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDA-MNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETY  180 (361)
T ss_dssp             SSEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCS-EEEETTCEEEEEESCEEECTTSCGGGCCEETTEEC
T ss_pred             eeeEEEeeccccceEEEEeEEeecCccCCCccccCCCcccCCCe-eEEecCCceEEEEccEeccCCccccccccccCcce
Confidence            3456663  26789999999998542                44 555456788888888886311 1100000      


Q ss_pred             --CCCC--CCCcceEEEEEceeecCCCCCcceee-----------cCeEEEEcceEeCccceeEEecCCceEEEEceEEE
Q 022635          138 --DPSH--VGDRCIRVTIHHCLFDGTRQRHPRLR-----------FGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYE  202 (294)
Q Consensus       138 --~d~~--~~d~~~~vT~hhN~f~~~~~R~P~~r-----------~g~~h~~NN~~~n~~~~~~~~~~~~~v~~e~N~f~  202 (294)
                        .|..  .....-.||+.+|.|.+...-+ .+.           ..++.+.+|+|.+...+.=..+. +++.+.||||.
T Consensus       181 ~~~Dg~~di~~~s~~vTiS~~~f~~h~~~~-l~G~~d~~~~~d~g~~~vT~hhN~~~~~~~R~P~~r~-G~~Hv~NNy~~  258 (361)
T d1pe9a_         181 VQHDGALDIKRGSDYVTISNSLIDQHDKTM-LIGHSDSNGSQDKGKLHVTLFNNVFNRVTERAPRVRY-GSIHSFNNVFK  258 (361)
T ss_dssp             CCCCCSEEECTTCEEEEEESCEEEEEEECE-EESCCTTCHHHHTTCCEEEEESCEEEEEEECSSEESS-CEEEEESCEEE
T ss_pred             eeeeeeEEeecCccceEecCCcccCCCcce-EeccCCCCccccCCcceEEEECccccCCcCcCCCeeC-ceEEEECceee
Confidence              0100  0001137999999996532111 111           13689999999876554333332 57888899998


Q ss_pred             cCCccceeeeehhcccccccCCcceEEEeCCeEeeCce
Q 022635          203 AGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQ  240 (294)
Q Consensus       203 ~g~~~~~~~~~~~~~~~~~~~~~G~~~~~gn~~~~g~~  240 (294)
                      +........+.    ........+.+..++|+|..+..
T Consensus       259 n~~~~~~~~~~----y~~~~~~~a~il~E~NyF~~~~~  292 (361)
T d1pe9a_         259 GDAKDPVYRYQ----YSFGIGTSGSVLSEGNSFTIANL  292 (361)
T ss_dssp             EETTCSSSCCC----CSEEECTTCEEEEESCEEEEETC
T ss_pred             cCcCccccccc----eeeecCCCCEEEEEceEEECCCC
Confidence            86432211110    00111234467788999987643

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=96.78  E-value=0.0078  Score=55.38  Aligned_cols=93  Identities=19%  Similarity=0.179  Sum_probs=49.9

Q ss_pred             eeccEEEEeeEEEcCCCCCCC------ceEEcCCCceEEEEceeecCCCCCe--eEe------------eeCCccEEEEc
Q 022635           64 ECEHVIICNLEFEGGRGHDVD------GIQIKPNSRHIWIDRCSLRDYDDGL--IDI------------TRQSTDITVSR  123 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~~~~~D------~i~i~~~~~~vwIDHcs~s~~~Dg~--id~------------~~~s~~vTiS~  123 (294)
                      .++++.|++..|+.......+      ++... .+++.+|+||.|......-  +..            .....+..|.+
T Consensus        99 ~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~-~~~n~~I~~n~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~I~~  177 (481)
T d1ofla_          99 YGSYNRITACVFDCFDEANSAYITTSLTEDGK-VPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVDH  177 (481)
T ss_dssp             CSSSCEEESCEEESCCSSCSCSEEECCCTTCC-CCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCCCCEEES
T ss_pred             EeecceEeeeEeecccccccceeccceeEEEe-eccceEEECceEecCCCCccEEEecCCCceeecCcccccccccEEEe
Confidence            467888888888875432222      22222 4678999999997532211  111            01234566777


Q ss_pred             cEEee------cCeeeEecCCCCCCCCcceEEEEEceeecCCCC
Q 022635          124 CYFTQ------HDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQ  161 (294)
Q Consensus       124 ~~f~~------h~~~~liG~~d~~~~d~~~~vT~hhN~f~~~~~  161 (294)
                      |.|..      +..+..+|.+....    -+.++.+|+|.+|..
T Consensus       178 n~~~~~~~~gn~~~~i~~G~s~~~~----sn~~v~nN~~~~~~g  217 (481)
T d1ofla_         178 CFFSNPQKPGNAGGGIRIGYYRNDI----GRCLVDSNLFMRQDS  217 (481)
T ss_dssp             CEEEECCCSSSCCCSEEECSSTTCB----CCCEEESCEEEEECS
T ss_pred             eEecCccccCCceeEEEeeeEeecc----CCEEEEeeeEEccCC
Confidence            77764      22334455432111    145666666665554

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=96.67  E-value=0.017  Score=52.23  Aligned_cols=119  Identities=13%  Similarity=0.110  Sum_probs=75.3

Q ss_pred             CCCCCceEEcCCCceEEEEceeecC-----CCCCeeEeeeCCccEEEEccEEeecCeeeEecCCCCCCCCcceEEEEEce
Q 022635           80 GHDVDGIQIKPNSRHIWIDRCSLRD-----YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHC  154 (294)
Q Consensus        80 ~~~~D~i~i~~~~~~vwIDHcs~s~-----~~Dg~id~~~~s~~vTiS~~~f~~h~~~~liG~~d~~~~d~~~~vT~hhN  154 (294)
                      .....++.+. .+++|.|+++++..     ..|| +|+ ..+++|+|++|.|...+-+..+......  ....+|++.+|
T Consensus       171 ns~~~~~~~~-~~~~v~i~n~~I~~~~~~~NtDG-idi-~~s~nv~I~n~~i~~gDD~i~~ks~~~~--~~~~ni~i~n~  245 (376)
T d1bhea_         171 NSPNFHVVFS-DGDGFTAWKTTIKTPSTARNTDG-IDP-MSSKNITIAYSNIATGDDNVAIKAYKGR--AETRNISILHN  245 (376)
T ss_dssp             CCSSCSEEEE-SCEEEEEEEEEEECCTTCSSCCS-EEE-ESCEEEEEESCEEECSSCSEEEEECTTS--CCEEEEEEEEE
T ss_pred             cCCceEEEEe-CCceEEEEeEeccCCccCCCcce-eec-cccceEEEEeceeecCCCceeeecccCC--CCcceEEEEee
Confidence            3556777776 78999999998864     3688 788 5799999999999987776655432110  11247899999


Q ss_pred             eecCCCCCcceee---cC--eEEEEcceEeCccceeEEe--cC--C---ceEEEEceEEEcCCc
Q 022635          155 LFDGTRQRHPRLR---FG--KVHLYNNYTRNWGIYAVCA--SV--E---SQIYSQCNIYEAGQK  206 (294)
Q Consensus       155 ~f~~~~~R~P~~r---~g--~~h~~NN~~~n~~~~~~~~--~~--~---~~v~~e~N~f~~g~~  206 (294)
                      .|....  .-.+.   .|  .+++.|+.+++.. +++..  ..  +   ..+.+|+..++....
T Consensus       246 ~~~~~~--g~~iGs~~~~v~nv~i~n~~~~~~~-~g~~Iks~~~~gG~v~nI~f~ni~~~~v~~  306 (376)
T d1bhea_         246 DFGTGH--GMSIGSETMGVYNVTVDDLKMNGTT-NGLRIKSDKSAAGVVNGVRYSNVVMKNVAK  306 (376)
T ss_dssp             EECSSS--CEEEEEEESSEEEEEEEEEEEESCS-EEEEEECCTTTCCEEEEEEEEEEEEESCSE
T ss_pred             EEecCC--CceeccccCCEEEEEEEeeeEcCCC-ceEEEEecCCCccEEEEEEEEeEEEeccCc
Confidence            886533  22221   11  4678888887653 34432  11  1   245666666665543

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=96.54  E-value=0.0071  Score=54.13  Aligned_cols=72  Identities=13%  Similarity=0.215  Sum_probs=53.5

Q ss_pred             CCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCe--eEee----eCCccEEEEccEEeecCe
Q 022635           58 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGL--IDIT----RQSTDITVSRCYFTQHDK  131 (294)
Q Consensus        58 ~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~--id~~----~~s~~vTiS~~~f~~h~~  131 (294)
                      .||.+..++||.|+|-.|+.    ++|+|.+. .+++|+|..|.+..+. |.  ..+.    .+..+|++++|.|.+...
T Consensus       153 DGidi~~s~nV~I~n~~i~t----gDDcIaik-s~~ni~i~n~~c~~~h-G~sigslG~~~~~~v~nV~v~n~~i~~t~~  226 (335)
T d1czfa_         153 DAFDVGNSVGVNIIKPWVHN----QDDCLAVN-SGENIWFTGGTCIGGH-GLSIGSVGDRSNNVVKNVTIEHSTVSNSEN  226 (335)
T ss_dssp             CSEEECSCEEEEEESCEEEC----SSCSEEES-SEEEEEEESCEEESSC-CEEEEEECSSSCCEEEEEEEEEEEEEEEEE
T ss_pred             CceEecCCCeEEEEeeEEec----CCceEEec-CceEEEEEEEEEECCC-CccccccCCCCcCCEeEEEEEeeEEECCCc
Confidence            56777777788888888874    58999996 7899999999886532 32  1221    123699999999998777


Q ss_pred             eeEe
Q 022635          132 TMLI  135 (294)
Q Consensus       132 ~~li  135 (294)
                      +..|
T Consensus       227 g~rI  230 (335)
T d1czfa_         227 AVRI  230 (335)
T ss_dssp             EEEE
T ss_pred             cceE
Confidence            7655

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=96.25  E-value=0.017  Score=51.60  Aligned_cols=70  Identities=19%  Similarity=0.253  Sum_probs=57.3

Q ss_pred             CCEEEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecCCCCCeeEee---e-C-CccEEEEccEEeecCee
Q 022635           58 KGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDIT---R-Q-STDITVSRCYFTQHDKT  132 (294)
Q Consensus        58 ~gl~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~~~Dg~id~~---~-~-s~~vTiS~~~f~~h~~~  132 (294)
                      .||.+. ++||.|+|-.|+.    ++|+|.|. .++||+|..|.+..+. | +.+.   . + ..+|+|++|.|.+...+
T Consensus       151 DGidi~-s~nV~I~n~~i~~----gDDcIaik-~g~ni~i~n~~c~~gh-G-isiGS~g~~~~V~nV~v~n~~~~~t~~G  222 (333)
T d1k5ca_         151 DGFDVS-ANNVTIQNCIVKN----QDDCIAIN-DGNNIRFENNQCSGGH-G-ISIGSIATGKHVSNVVIKGNTVTRSMYG  222 (333)
T ss_dssp             CSEEEE-CSSEEEESCEEES----SSCSEEEE-EEEEEEEESCEEESSC-C-EEEEEECTTCEEEEEEEESCEEEEEEEE
T ss_pred             ceEeEe-cceEEEEecEEec----CCCEEEEc-CccEEEEEEEEECCCC-c-eeeecccCCCcEEEEEEEEeEEeCCcEE
Confidence            689995 8999999999996    47999996 7899999999998876 5 4552   1 2 37999999999987777


Q ss_pred             eEe
Q 022635          133 MLI  135 (294)
Q Consensus       133 ~li  135 (294)
                      .-|
T Consensus       223 ~rI  225 (333)
T d1k5ca_         223 VRI  225 (333)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=96.13  E-value=0.0076  Score=54.58  Aligned_cols=70  Identities=11%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             EEeeeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC------CCCCeeEeeeCCccEEEEccEEeecCeeeE
Q 022635           61 RLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD------YDDGLIDITRQSTDITVSRCYFTQHDKTML  134 (294)
Q Consensus        61 ~i~~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~------~~Dg~id~~~~s~~vTiS~~~f~~h~~~~l  134 (294)
                      .+..++|+.|++|++++..   .=.+.+. .++++-+.++.+..      ..|| +|+   +.+++|++|.|...+-+.-
T Consensus       127 ~~~~~~n~~i~giti~~s~---~~~~~~~-~~~~v~i~~~~i~~~~~~~~n~dg-i~~---~~~~~i~~~~~~~gDD~i~  198 (373)
T d1ogmx2         127 NLGGGQTWYCVGPTINAPP---FNTMDFN-GNSGISSQISDYKQVGAFFFQTDG-PEI---YPNSVVHDVFWHVNDDAIK  198 (373)
T ss_dssp             CCCSSEEEEEESCEEECCS---SCCEEEC-SSSCEEEEEEEEEEECCCSTTCCC-CBC---CTTCEEEEEEEEESSCSEE
T ss_pred             EEEcceEEEEeCEEEECCC---eeEEEEc-cCCeEEEEEEEEEecCCCCCCCee-eec---cCCEEEEeeEEecCCCEEE
Confidence            4457899999999999864   3456675 78999988888842      4577 565   5789999999998888777


Q ss_pred             ecCC
Q 022635          135 IGAD  138 (294)
Q Consensus       135 iG~~  138 (294)
                      ++++
T Consensus       199 ~~s~  202 (373)
T d1ogmx2         199 IYYS  202 (373)
T ss_dssp             CCST
T ss_pred             ecCC
Confidence            7654

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.52  E-value=0.12  Score=44.85  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=23.1

Q ss_pred             eeccEEEEeeEEEcCCCCCCCceEEcCCCceEEEEceeecC
Q 022635           64 ECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRD  104 (294)
Q Consensus        64 ~~~NVIirnl~i~~~~~~~~D~i~i~~~~~~vwIDHcs~s~  104 (294)
                      .+++.+|++..|+...   ..++.+.......++.+|.+..
T Consensus       135 ~~~~~~i~n~~i~~~~---~~g~~~~~~~~~~~~~~~~~~~  172 (400)
T d1ru4a_         135 IGSHNTFENTAFHHNR---NTGLEINNGGSYNTVINSDAYR  172 (400)
T ss_dssp             CSSSCEEESCEEESCS---SCSEEECTTCCSCEEESCEEEC
T ss_pred             cccccccccceEecCC---cceEEEeccccccEEEEeeEEe
Confidence            3678899999998743   2345553334455555555543