Citrus Sinensis ID: 022638

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
MTNLLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECSLSKY
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccccEEEEEEccccccccEEccEEEEEEEEEEEEEccccccccEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEcccccEEEEEEccccccccEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccEEEEEEEcccccccccccEEEccccccEEEEEEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHcccEEEEccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEcccccccEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEEccHHcccccccccccEEEEEccccccHcHccccEEcccccccEEEEEcccccccEEccccccccccccccccccHHHHHHccHHHHHHHHHHHHccEEEEcccccHccccccccHcccccc
MTNLLKFIGAIGFLSAYLLQISRASvvstgdfnkdffvtwspshvntsedgkarslkldqesgagfssnqmflFGQLDmqiklvpgdsagTVVGFYmasdqpnrdeidfeflgnvsgqpyilqtniyadgsdnreqriylwfdptkdfhtYSILWNLHQIVLMVDsvpirtyrnhanegvpyprwqpmsikislwngdswatrggqdkidwsqgpfvasfrnykidacvwngnprfcragsptnwwnqkqFSTLTSIQRRLFKWVRNYHVIYDYCQDnqrfqnnlpkecslsky
MTNLLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWSpshvntsedgkARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHanegvpyprwqPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYcqdnqrfqnnlpkecslsky
MTNLLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECSLSKY
***LLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWS****************************QMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQR**************
******FIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNP***************QFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECSLS**
MTNLLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECSLSKY
*TNLLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRA**PTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECS****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTNLLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECSLSKY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query294 2.2.26 [Sep-21-2011]
Q9ZVK1299 Probable xyloglucan endot yes no 0.979 0.963 0.727 1e-129
Q41542293 Probable xyloglucan endot N/A no 0.884 0.887 0.5 2e-77
Q8LF99292 Probable xyloglucan endot no no 0.867 0.873 0.521 3e-77
Q8LG58291 Probable xyloglucan endot no no 0.938 0.948 0.478 8e-77
Q8LER3293 Probable xyloglucan endot no no 0.952 0.955 0.480 2e-76
Q39857295 Probable xyloglucan endot no no 0.887 0.884 0.5 7e-76
Q8L9A9305 Probable xyloglucan endot no no 0.965 0.931 0.461 3e-75
Q9XIW1293 Probable xyloglucan endot no no 0.870 0.873 0.507 5e-75
Q38907284 Probable xyloglucan endot no no 0.911 0.943 0.471 6e-75
Q8LNZ5293 Probable xyloglucan endot N/A no 0.870 0.873 0.503 9e-75
>sp|Q9ZVK1|XTH10_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1 Back     alignment and function desciption
 Score =  460 bits (1183), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 211/290 (72%), Positives = 247/290 (85%), Gaps = 2/290 (0%)

Query: 7   FIGAIGF--LSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGA 64
           F+  +GF  +S+ LL +S+ASVVS+GDFNKDFFVTWSP+HVNTS DG++R+LKLDQESGA
Sbjct: 10  FVLLVGFSIISSLLLWVSQASVVSSGDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGA 69

Query: 65  GFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQT 124
            FSS Q FLFGQ+DM+IKL+ G S GTVV +YM+SDQPNRDEIDFEFLGNV+GQPYILQT
Sbjct: 70  SFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPNRDEIDFEFLGNVNGQPYILQT 129

Query: 125 NIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPR 184
           N+YA+G DNRE+RI+LWFDP KDFHTYSILWN+HQIV MVD +PIR YRNH  +GV YPR
Sbjct: 130 NVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPR 189

Query: 185 WQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTN 244
            QPMS++ SLWNG+SWATRGG DKIDWS+GPFVASF +YKIDAC+W GN  FC   S  N
Sbjct: 190 LQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIWIGNTSFCNGESTEN 249

Query: 245 WWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECSLSKY 294
           WWN+ +FS+LT +Q+R FKWVR YH+IYDYCQD  RF N LPKECSL KY
Sbjct: 250 WWNKNEFSSLTRVQKRWFKWVRKYHLIYDYCQDYGRFNNKLPKECSLPKY 299
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q41542|XTH_WHEAT Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1 Back     alignment and function description
>sp|Q8LF99|XTH6_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2 Back     alignment and function description
>sp|Q8LG58|XTH16_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2 Back     alignment and function description
>sp|Q8LER3|XTH7_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2 Back     alignment and function description
>sp|Q39857|XTH_SOYBN Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1 Back     alignment and function description
>sp|Q8L9A9|XTH8_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=2 Back     alignment and function description
>sp|Q9XIW1|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1 Back     alignment and function description
>sp|Q38907|XTH25_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2 Back     alignment and function description
>sp|Q8LNZ5|XTHB_PHAAN Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
356534254296 PREDICTED: probable xyloglucan endotrans 0.989 0.983 0.812 1e-145
356574351296 PREDICTED: probable xyloglucan endotrans 0.989 0.983 0.798 1e-143
225429141295 PREDICTED: probable xyloglucan endotrans 0.982 0.979 0.800 1e-141
297736384323 unnamed protein product [Vitis vinifera] 0.972 0.885 0.802 1e-140
224103807294 predicted protein [Populus trichocarpa] 1.0 1.0 0.782 1e-139
147836439277 hypothetical protein VITISV_039824 [Viti 0.942 1.0 0.815 1e-138
388502454295 unknown [Lotus japonicus] 0.979 0.976 0.770 1e-138
255562136294 Xyloglucan endotransglucosylase/hydrolas 1.0 1.0 0.755 1e-134
297831914298 hypothetical protein ARALYDRAFT_480350 [ 0.979 0.966 0.740 1e-129
449465113308 PREDICTED: probable xyloglucan endotrans 0.962 0.918 0.745 1e-129
>gi|356534254|ref|XP_003535672.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10-like [Glycine max] Back     alignment and taxonomy information
 Score =  519 bits (1336), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 238/293 (81%), Positives = 267/293 (91%), Gaps = 2/293 (0%)

Query: 2   TNLLKFIGAIGFLSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQE 61
           T LL F   IGF+S+ L Q+S AS+VSTGDFNKDFF+ WSP+HVNTS DG ARSLKLDQE
Sbjct: 6   TALLIFF--IGFVSSSLFQVSVASIVSTGDFNKDFFLIWSPTHVNTSADGHARSLKLDQE 63

Query: 62  SGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYI 121
           SG+GF+SNQMFLFGQ+DMQIKLVPGDSAGTV+ +Y+ SDQPNRDEIDFEFLGNVSGQPYI
Sbjct: 64  SGSGFASNQMFLFGQIDMQIKLVPGDSAGTVLAYYLTSDQPNRDEIDFEFLGNVSGQPYI 123

Query: 122 LQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVP 181
           LQTNI+ADG+DNRE+RIYLWFDPTKDFHTYS+LWN+HQIVLMVD +PIR YRNHA++GV 
Sbjct: 124 LQTNIFADGTDNREERIYLWFDPTKDFHTYSVLWNMHQIVLMVDMIPIRVYRNHADKGVA 183

Query: 182 YPRWQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGS 241
           +PRWQPMS+K +LWNGDSWATRGGQDKIDW++GPF+ASFRNYKIDACVW GNPRFCRA S
Sbjct: 184 FPRWQPMSLKATLWNGDSWATRGGQDKIDWTKGPFIASFRNYKIDACVWKGNPRFCRAAS 243

Query: 242 PTNWWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECSLSKY 294
           PTNWWNQ   STLTS QRR FKWVR YH+IYDYCQDN+RFQNNLP+ECSL KY
Sbjct: 244 PTNWWNQYSSSTLTSTQRRWFKWVRKYHMIYDYCQDNERFQNNLPRECSLLKY 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574351|ref|XP_003555312.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10-like [Glycine max] Back     alignment and taxonomy information
>gi|225429141|ref|XP_002270633.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736384|emb|CBI25107.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103807|ref|XP_002313201.1| predicted protein [Populus trichocarpa] gi|222849609|gb|EEE87156.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147836439|emb|CAN70891.1| hypothetical protein VITISV_039824 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388502454|gb|AFK39293.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255562136|ref|XP_002522076.1| Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis] gi|223538675|gb|EEF40276.1| Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297831914|ref|XP_002883839.1| hypothetical protein ARALYDRAFT_480350 [Arabidopsis lyrata subsp. lyrata] gi|297329679|gb|EFH60098.1| hypothetical protein ARALYDRAFT_480350 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449465113|ref|XP_004150273.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10-like [Cucumis sativus] gi|449533605|ref|XP_004173764.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query294
TAIR|locus:2064284299 XTH10 "xyloglucan endotransglu 0.979 0.963 0.727 3.1e-122
TAIR|locus:2169990292 XTH6 "xyloglucan endotransgluc 0.867 0.873 0.521 1.5e-74
TAIR|locus:2137609293 XTH7 "xyloglucan endotransgluc 0.870 0.873 0.515 4e-74
TAIR|locus:2095168291 XTH16 "xyloglucan endotransglu 0.938 0.948 0.482 2.8e-73
TAIR|locus:2823919305 XTH8 "xyloglucan endotransgluc 0.945 0.911 0.470 3.6e-73
TAIR|locus:2159118293 XTH5 "xyloglucan endotransgluc 0.870 0.873 0.507 1.6e-72
TAIR|locus:2174597284 XTH25 "xyloglucan endotransglu 0.884 0.915 0.490 4.1e-72
TAIR|locus:2174572285 XTH12 "xyloglucan endotransglu 0.880 0.908 0.483 4.3e-70
TAIR|locus:2206335282 XTH17 "xyloglucan endotransglu 0.931 0.971 0.475 7e-70
TAIR|locus:2053967305 XTH21 "xyloglucan endotransglu 0.914 0.881 0.493 8.9e-70
TAIR|locus:2064284 XTH10 "xyloglucan endotransglucosylase/hydrolase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
 Identities = 211/290 (72%), Positives = 247/290 (85%)

Query:     7 FIGAIGF--LSAYLLQISRASVVSTGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGA 64
             F+  +GF  +S+ LL +S+ASVVS+GDFNKDFFVTWSP+HVNTS DG++R+LKLDQESGA
Sbjct:    10 FVLLVGFSIISSLLLWVSQASVVSSGDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGA 69

Query:    65 GFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQT 124
              FSS Q FLFGQ+DM+IKL+ G S GTVV +YM+SDQPNRDEIDFEFLGNV+GQPYILQT
Sbjct:    70 SFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPNRDEIDFEFLGNVNGQPYILQT 129

Query:   125 NIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPR 184
             N+YA+G DNRE+RI+LWFDP KDFHTYSILWN+HQIV MVD +PIR YRNH  +GV YPR
Sbjct:   130 NVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPR 189

Query:   185 WQPMSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTN 244
              QPMS++ SLWNG+SWATRGG DKIDWS+GPFVASF +YKIDAC+W GN  FC   S  N
Sbjct:   190 LQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIWIGNTSFCNGESTEN 249

Query:   245 WWNQKQFSTLTSIQRRLFKWVRNYHVIYDYCQDNQRFQNNLPKECSLSKY 294
             WWN+ +FS+LT +Q+R FKWVR YH+IYDYCQD  RF N LPKECSL KY
Sbjct:   250 WWNKNEFSSLTRVQKRWFKWVRKYHLIYDYCQDYGRFNNKLPKECSLPKY 299
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
TAIR|locus:2169990 XTH6 "xyloglucan endotransglucosylase/hydrolase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137609 XTH7 "xyloglucan endotransglucosylase/hydrolase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095168 XTH16 "xyloglucan endotransglucosylase/hydrolase 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2823919 XTH8 "xyloglucan endotransglucosylase/hydrolase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159118 XTH5 "xyloglucan endotransglucosylase/hydrolase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174597 XTH25 "xyloglucan endotransglucosylase/hydrolase 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174572 XTH12 "xyloglucan endotransglucosylase/hydrolase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206335 XTH17 "xyloglucan endotransglucosylase/hydrolase 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053967 XTH21 "xyloglucan endotransglucosylase/hydrolase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LNZ5XTHB_PHAAN2, ., 4, ., 1, ., 2, 0, 70.50380.87070.8737N/Ano
Q9ZVK1XTH10_ARATH2, ., 4, ., 1, ., 2, 0, 70.72750.97950.9632yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038589001
SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (295 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-152
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 1e-108
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 1e-69
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 4e-27
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 3e-20
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 6e-18
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 8e-16
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 1e-07
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 4e-04
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  424 bits (1093), Expect = e-152
 Identities = 143/263 (54%), Positives = 181/263 (68%), Gaps = 2/263 (0%)

Query: 28  STGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGD 87
               F+++FFVTW P H+  S DG +  L LDQ SG+GF S   +LFG   M+IKL PGD
Sbjct: 2   VAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGD 61

Query: 88  SAGTVVGFYMASDQ-PNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTK 146
           SAGTV  FY++S    N DEIDFEFLGNV+GQPY LQTN++A+G   REQRIYLWFDPT 
Sbjct: 62  SAGTVTAFYLSSQGPDNHDEIDFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTA 121

Query: 147 DFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQ 206
           DFHTYSILWN HQIV  VD VPIR ++N+   GVPYP  QPM +  S+W+G  WAT+GG+
Sbjct: 122 DFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWATQGGR 181

Query: 207 DKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVR 266
            KIDWS  PFVAS+R++K+D CV +    F       +WWN   +  L++ Q+R  +WVR
Sbjct: 182 VKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVR 241

Query: 267 NYHVIYDYCQDNQRFQNNLPKEC 289
             +++YDYC D +R+    P EC
Sbjct: 242 RNYMVYDYCDDRKRY-PVPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 294
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 100.0
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 100.0
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.97
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.96
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.96
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.95
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.94
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.93
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.86
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.56
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.4
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 93.99
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 93.93
smart00560133 LamGL LamG-like jellyroll fold domain. 90.22
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 87.99
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 85.52
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 84.0
cd00110151 LamG Laminin G domain; Laminin G-like domains are 83.52
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 81.72
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8e-87  Score=618.32  Aligned_cols=266  Identities=50%  Similarity=0.971  Sum_probs=248.9

Q ss_pred             cccccccCCcccccCCCeEEcCCCcEEEEEEeCCCcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeecCCCCCce
Q 022638           28 STGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEI  107 (294)
Q Consensus        28 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EI  107 (294)
                      .+.+|.++|.+.|+.+|+.+.++|+.|+|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++.++.+|||
T Consensus        23 ~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEI  102 (291)
T PLN03161         23 VEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEI  102 (291)
T ss_pred             ccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeE
Confidence            35679999999999999999888889999999999999999999999999999999998889999999999876789999


Q ss_pred             EEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCCc
Q 022638          108 DFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQP  187 (294)
Q Consensus       108 DiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~P  187 (294)
                      ||||||+++++|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..|.+||+++|
T Consensus       103 DiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~p  182 (291)
T PLN03161        103 DFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQG  182 (291)
T ss_pred             EEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999987777889997789


Q ss_pred             eEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEEEEeeeeCCC--CCcCCCCC-CCccccccccCcCCHHHHHHHHH
Q 022638          188 MSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGN--PRFCRAGS-PTNWWNQKQFSTLTSIQRRLFKW  264 (294)
Q Consensus       188 m~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~~c~~~~~--~~~c~~~~-~~~~~~~~~~~~l~~~~~~~~~~  264 (294)
                      |+|++|||+|++|||+||++||||+++||+|.|++|++++|.+.++  ...| ..+ +..||+++.|++|+++|+++|+|
T Consensus       183 M~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c-~~~~~~~~~~~~~~~~l~~~~~~~~~~  261 (291)
T PLN03161        183 MRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQC-ADPTPSNWWTSPSYSQLTNAQLTQMKK  261 (291)
T ss_pred             eEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCcccc-CCCCccccccCccccCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987653  3469 543 46799999999999999999999


Q ss_pred             HHhcCeEeecccCCCCCCCCCCCCCCCCCC
Q 022638          265 VRNYHVIYDYCQDNQRFQNNLPKECSLSKY  294 (294)
Q Consensus       265 ~~~~~~~y~yc~d~~r~~~~~p~ec~~~~~  294 (294)
                      ||+||||||||+|++|||+++||||.++++
T Consensus       262 v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~~  291 (291)
T PLN03161        262 VRDNFMIYDYCKDTKRFNGVMPPECFKPQF  291 (291)
T ss_pred             HHhCcEEEeccCCCCcCCCCcCcccCCCcC
Confidence            999999999999999999878999998764

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 2e-78
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 4e-45
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 5e-45
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 2e-43
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 4e-43
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 7e-12
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 8e-12
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 5e-11
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 6e-11
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 2e-09
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 3e-09
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 3e-09
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 4e-09
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 5e-09
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 1e-07
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 1e-07
2hyk_A245 The Crystal Structure Of An Endo-Beta-1,3-Glucanase 2e-04
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure 
Iteration: 1

 Score =  289 bits (739), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 133/262 (50%), Positives = 174/262 (66%), Gaps = 2/262 (0%)
Query: 32  FNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGT 91
           F +++  TW+  H+     G    L LD+ +G GF S   +LFG   MQ+KLVPGDSAGT
Sbjct: 17  FGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGT 76
Query: 92  VVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTY 151
           V  FY++S     DEIDFEFLGN +GQPYILQTN++  G  +REQRIYLWFDPTK+FH Y
Sbjct: 77  VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYY 136
Query: 152 SILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKIDW 211
           S+LWN++ IV +VD VPIR ++N  + GV +P  QPM I  SLWN D WATRGG +K DW
Sbjct: 137 SVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW 196
Query: 212 SQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHVI 271
           S+ PF+AS+R++ ID C  +   +FC A     WW+QK+F  L + Q R   WVR  + I
Sbjct: 197 SKAPFIASYRSFHIDGCEASVEAKFC-ATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTI 255
Query: 272 YDYCQDNQRFQNNLPKECSLSK 293
           Y+YC D  R+  ++P EC   +
Sbjct: 256 YNYCTDRSRYP-SMPPECKRDR 276
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From Alkaliphilic Nocardiopsis Sp.Strain F96 Length = 245 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query294
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 1e-106
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 5e-90
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 2e-56
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 9e-56
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 5e-55
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 4e-52
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 1e-48
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 2e-45
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 3e-41
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 3e-21
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 7e-12
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 5e-06
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 7e-06
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 1e-05
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 1e-05
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 5e-05
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 6e-05
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 7e-05
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 1e-04
3rq0_A269 Glycosyl hydrolases family protein 16; structural 6e-04
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  309 bits (792), Expect = e-106
 Identities = 133/263 (50%), Positives = 174/263 (66%), Gaps = 2/263 (0%)

Query: 31  DFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAG 90
            F +++  TW+  H+     G    L LD+ +G GF S   +LFG   MQ+KLVPGDSAG
Sbjct: 16  AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAG 75

Query: 91  TVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHT 150
           TV  FY++S     DEIDFEFLGN +GQPYILQTN++  G  +REQRIYLWFDPTK+FH 
Sbjct: 76  TVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHY 135

Query: 151 YSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKID 210
           YS+LWN++ IV +VD VPIR ++N  + GV +P  QPM I  SLWN D WATRGG +K D
Sbjct: 136 YSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTD 195

Query: 211 WSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHV 270
           WS+ PF+AS+R++ ID C  +   +FC A     WW+QK+F  L + Q R   WVR  + 
Sbjct: 196 WSKAPFIASYRSFHIDGCEASVEAKFC-ATQGARWWDQKEFQDLDAFQYRRLSWVRQKYT 254

Query: 271 IYDYCQDNQRFQNNLPKECSLSK 293
           IY+YC D  R+  ++P EC   +
Sbjct: 255 IYNYCTDRSRY-PSMPPECKRDR 276
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Length = 324 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 100.0
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 100.0
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 100.0
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 100.0
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 100.0
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 100.0
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 100.0
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.98
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 99.97
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.94
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.92
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.87
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.79
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 97.03
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 94.68
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 93.14
3pvn_A206 C-reactive protein; pentraxin family, immune syste 83.41
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-79  Score=570.34  Aligned_cols=262  Identities=51%  Similarity=1.020  Sum_probs=246.3

Q ss_pred             cccccccCCcccccCCCeEEcCCCcEEEEEEeCCCcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeecCCCCCce
Q 022638           28 STGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEI  107 (294)
Q Consensus        28 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EI  107 (294)
                      .+.+|.++|+++|+++||++.++|+.|+|+|++.+||+|.||+.|+||+||||||+|+|+++|+||||||++.++.++||
T Consensus        13 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~p~~gEI   92 (278)
T 1umz_A           13 VDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEI   92 (278)
T ss_dssp             CCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEE
T ss_pred             cCCcccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCCCCCCeE
Confidence            46799999999999999999888889999999999999999999999999999999998889999999999987899999


Q ss_pred             EEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCCc
Q 022638          108 DFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQP  187 (294)
Q Consensus       108 DiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~P  187 (294)
                      |||++|+++++|+++|+|+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||+++|++++.+..+.+|||++|
T Consensus        93 DmE~lG~~~g~~~tvhtn~~~~g~~~~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~~~Pf~~P  172 (278)
T 1umz_A           93 DFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQP  172 (278)
T ss_dssp             EEEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSC
T ss_pred             EEEEeCCCCCCceEEEEEEecCCCCCCcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCccCcCCCc
Confidence            99999999889999999999999989998999999999999999999999999999999999999987766788999999


Q ss_pred             eEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEEEEeeeeCCCCCcCCCCCCCccccccccCcCCHHHHHHHHHHHh
Q 022638          188 MSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRN  267 (294)
Q Consensus       188 m~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~~c~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  267 (294)
                      |+|+||||+||+|+++||++++||+.+||+++|+.+++.+|....+...| .+.+..||+++.+++|+++|+++|+|||+
T Consensus       173 ~~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~~~~~~c-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  251 (278)
T 1umz_A          173 MKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFC-ATQGARWWDQKEFQDLDAFQYRRLSWVRQ  251 (278)
T ss_dssp             BEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSSCCC-TTTTCSGGGSGGGSSCCHHHHHHHHHHHH
T ss_pred             eEEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCCCCCCcc-CCCcccccccCccccCCHHHHHHHHHHHH
Confidence            99999999999999999988999999999999999999999875444569 65566799999999999999999999999


Q ss_pred             cCeEeecccCCCCCCCCCCCCCCC
Q 022638          268 YHVIYDYCQDNQRFQNNLPKECSL  291 (294)
Q Consensus       268 ~~~~y~yc~d~~r~~~~~p~ec~~  291 (294)
                      ||||||||+|++|||+ +||||.+
T Consensus       252 ~~~~y~yc~d~~r~~~-~~~ec~~  274 (278)
T 1umz_A          252 KYTIYNYCTDRSRYPS-MPPECKR  274 (278)
T ss_dssp             HTEEEEGGGCTTTCSS-CCTHHHH
T ss_pred             CCeEEecCCCCCcCCC-CCcccCC
Confidence            9999999999999999 8999974
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 294
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 5e-98
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 4e-38
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 6e-20
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 1e-17
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 5e-09
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 5e-06
d1upsa1266 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing 0.002
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  286 bits (734), Expect = 5e-98
 Identities = 133/263 (50%), Positives = 174/263 (66%), Gaps = 2/263 (0%)

Query: 31  DFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAG 90
            F +++  TW+  H+     G    L LD+ +G GF S   +LFG   MQ+KLVPGDSAG
Sbjct: 5   AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAG 64

Query: 91  TVVGFYMASDQPNRDEIDFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHT 150
           TV  FY++S     DEIDFEFLGN +GQPYILQTN++  G  +REQRIYLWFDPTK+FH 
Sbjct: 65  TVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHY 124

Query: 151 YSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQPMSIKISLWNGDSWATRGGQDKID 210
           YS+LWN++ IV +VD VPIR ++N  + GV +P  QPM I  SLWN D WATRGG +K D
Sbjct: 125 YSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTD 184

Query: 211 WSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRNYHV 270
           WS+ PF+AS+R++ ID C  +   +FC A     WW+QK+F  L + Q R   WVR  + 
Sbjct: 185 WSKAPFIASYRSFHIDGCEASVEAKFC-ATQGARWWDQKEFQDLDAFQYRRLSWVRQKYT 243

Query: 271 IYDYCQDNQRFQNNLPKECSLSK 293
           IY+YC D  R+  ++P EC   +
Sbjct: 244 IYNYCTDRSRY-PSMPPECKRDR 265
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 266 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query294
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.96
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.96
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.96
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.96
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 92.96
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 92.91
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 92.44
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 91.9
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 91.84
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 90.97
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 90.89
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 87.64
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 85.81
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 84.92
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 84.57
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=6.5e-82  Score=580.17  Aligned_cols=264  Identities=50%  Similarity=1.017  Sum_probs=250.4

Q ss_pred             cccccccCCcccccCCCeEEcCCCcEEEEEEeCCCcceEEEcceeEeEEEEEEEEecCCCCCceEEEEEeeecCCCCCce
Q 022638           28 STGDFNKDFFVTWSPSHVNTSEDGKARSLKLDQESGAGFSSNQMFLFGQLDMQIKLVPGDSAGTVVGFYMASDQPNRDEI  107 (294)
Q Consensus        28 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~ld~~sGs~i~Sk~~~~YG~~e~riKlp~g~s~G~v~AFwl~s~~~~~~EI  107 (294)
                      ...+|+++|.++|+++||++.++|..|+|+||+.+||+|+||+.|+||+||||||||+|+++|++++||++++++.++||
T Consensus         2 ~~~~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~~~~~dEI   81 (267)
T d1umza_           2 VDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQNSEHDEI   81 (267)
T ss_dssp             CCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSSSSCCEE
T ss_pred             ccccCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCCCCCCCeE
Confidence            35689999999999999999999999999999999999999999999999999999999888999999999887899999


Q ss_pred             EEEEccCCCCCCeEEEeEEEeCCCCCcceeEeccCCCCCCcEEEEEEEcCceEEEEecCeeEEEEEccCCCCCCCCCCCc
Q 022638          108 DFEFLGNVSGQPYILQTNIYADGSDNREQRIYLWFDPTKDFHTYSILWNLHQIVLMVDSVPIRTYRNHANEGVPYPRWQP  187 (294)
Q Consensus       108 DiE~lG~~~g~p~~vqtN~~~~g~g~re~~~~l~fdps~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P~~~P  187 (294)
                      |||++|++.++++++|||+|.+|.+++++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.++|+++|
T Consensus        82 DiE~lG~~~~~~~~v~tn~~~~g~g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p~~~p  161 (267)
T d1umza_          82 DFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQP  161 (267)
T ss_dssp             EEEEECCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSC
T ss_pred             EEEEecccCCcccEEEeeEeCCCCCCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCCcceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998888899998999


Q ss_pred             eEEEEEeecCCCCCCCCCccccCCCCCCeEEEEeEEEEEeeeeCCCCCcCCCCCCCccccccccCcCCHHHHHHHHHHHh
Q 022638          188 MSIKISLWNGDSWATRGGQDKIDWSQGPFVASFRNYKIDACVWNGNPRFCRAGSPTNWWNQKQFSTLTSIQRRLFKWVRN  267 (294)
Q Consensus       188 m~l~lnlW~gg~Wat~GG~~~~d~~~~Pf~a~~~~v~v~~c~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  267 (294)
                      |+|++|||+||+|||+||++++||+.+||+|+|++|+|++|.++.....| ...+..||++..+++|+.+|+++|+|||+
T Consensus       162 m~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  240 (267)
T d1umza_         162 MKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFC-ATQGARWWDQKEFQDLDAFQYRRLSWVRQ  240 (267)
T ss_dssp             BEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSSCCC-TTTTCSGGGSGGGSSCCHHHHHHHHHHHH
T ss_pred             EEEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCCCCccc-CCCCCccccccccccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987766667 55567899999999999999999999999


Q ss_pred             cCeEeecccCCCCCCCCCCCCCCCCC
Q 022638          268 YHVIYDYCQDNQRFQNNLPKECSLSK  293 (294)
Q Consensus       268 ~~~~y~yc~d~~r~~~~~p~ec~~~~  293 (294)
                      ||||||||+|++|||. +||||++++
T Consensus       241 ~~~~y~yC~d~~r~~~-~p~EC~~~~  265 (267)
T d1umza_         241 KYTIYNYCTDRSRYPS-MPPECKRDR  265 (267)
T ss_dssp             HTEEEEGGGCTTTCSS-CCTHHHHHT
T ss_pred             CCcEEccCCCCCcCCC-CCcccCCCC
Confidence            9999999999999996 899998653
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure