Citrus Sinensis ID: 022656

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MINHLDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQY
Secondary Structure (PSIPRED)
ccccccccccccccHHccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccEEHHHcHHHEEEccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
minhldcipvkmcyyvcdcsfeksprhdayvpKFEAELAQFCEKLVMDLDRRVRRGRerlsqevepappppisaeksEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAaertqshisgkqhigyGMVRDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKEYESrkrsgssdrdryrdrdrdRERERYRERDrersrewdgrsgrdggrgadwrsrdrhrdrsrsrspvrhghrrsprspvrqy
Flexible Loop (DISEMBL)
minhldcipvkMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRerlsqevepappppisaekseQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEIlnvekttltqqsqndKVLMMAQEKKMALCEICGSFLVANDAAERTqshisgkqhigygmVRDFITEYKEAKEkareeerlakekevedrrkqrekeyesrkrsgssdrdryrdrdrdrereryrerdrersrewdgrsgrdggrgadwrsrdrhrdrsrsrspvrhghrrsprspvrqy
Low Complexity Region (SEG)
MINHLDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDrrvrrgrerLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITeykeakekareeerlakekeveDRRKQREKEYesrkrsgssdrdryrdrdrdrereryrerdrersrewdgrsgrdggrgadwrsrdrhrdrsrsrsPVRHGHRRSPRSPVRQY
Disordered region (IsUnstruct)
***HLDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLD*********************************************************ALMRKVEILNVEKT**********VLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY****************************************************************************************************************
Disordered Region (DISOPRED)
MINHLDCIPVKMCYYVCDCSFE*******YVPKFEAELAQFCEKLVMDLDRRVRRG**************************LEEKIKNLLEQVETLGEAGKVDEAEALMRKVE***************************ALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDF********************************************************************************************************************
Disordered Region (DISEMBL)
MINHLDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRG********************SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKE**************************************************************************************************************
Disordered Region (DISPRO)
*INHLDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQE******PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA*********************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINHLDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPIxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKVDExxxxxxxxxxxxxxxxxxxxxSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMxxxxxxxxxxxxxxxxxxxxxxxxxxxxDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q5R8W6	432	Luc7-like protein 3 OS=Po	yes	no	0.574	0.391	0.367	1e-24
O95232	432	Luc7-like protein 3 OS=Ho	yes	no	0.574	0.391	0.367	1e-24
Q3SX41	432	Luc7-like protein 3 OS=Bo	yes	no	0.574	0.391	0.367	1e-24
Q5SUF2	432	Luc7-like protein 3 OS=Mu	yes	no	0.574	0.391	0.367	2e-24
Q54XQ8	360	Luc7-like protein OS=Dict	yes	no	0.557	0.455	0.302	2e-17
Q9CYI4	371	Putative RNA-binding prot	no	no	0.581	0.460	0.275	5e-13
Q9NQ29	371	Putative RNA-binding prot	no	no	0.581	0.460	0.275	6e-13
Q9Y383	392	Putative RNA-binding prot	no	no	0.503	0.377	0.3	3e-12
Q7TNC4	392	Putative RNA-binding prot	no	no	0.503	0.377	0.3	3e-12
Q09217	313	Uncharacterized protein B	no	no	0.534	0.501	0.285	4e-08

>sp|Q5R8W6|LC7L3_PONAB Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 5/174 (2%)

Query: 21  FEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPAPPPPISAEKSE 78
           +EKS R       +E +  ++ + L+ +++RR+RRG  RL  SQ  + +     + +  E
Sbjct: 70  YEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query: 79  QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
           ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct: 128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query: 139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREE 192
           K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E KE   K  EE
Sbjct: 187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE 240

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.
Pongo abelii (taxid: 9601)

>sp|O95232|LC7L3_HUMAN Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 5/174 (2%)

Query: 21  FEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPAPPPPISAEKSE 78
           +EKS R       +E +  ++ + L+ +++RR+RRG  RL  SQ  + +     + +  E
Sbjct: 70  YEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query: 79  QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
           ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct: 128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query: 139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREE 192
           K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E KE   K  EE
Sbjct: 187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE 240

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1

 Score =  113 bits (283), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 5/174 (2%)

Query: 21  FEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPAPPPPISAEKSE 78
           +EKS R       +E +  ++ + L+ +++RR+RRG  RL  SQ  + +     + +  E
Sbjct: 70  YEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query: 79  QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
           ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct: 128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query: 139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREE 192
           K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E KE   K  EE
Sbjct: 187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE 240

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Bos taurus (taxid: 9913)

>sp|Q5SUF2|LC7L3_MOUSE Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 5/174 (2%)

Query: 21  FEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPAPPPPISAEKSE 78
           +EKS R       +E +  ++ + L+ +++RR+RRG  RL  SQ  + +     + +  E
Sbjct: 70  YEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query: 79  QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
           ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct: 128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query: 139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREE 192
           K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E KE   K  EE
Sbjct: 187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEE 240

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Mus musculus (taxid: 10090)

>sp|Q54XQ8|LUC7L_DICDI Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 31/195 (15%)

Query: 17  CDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE--------PAP 68
           C   ++ +   D Y   +E E  +  E L+ D D++++R +ERL Q           P  
Sbjct: 68  CVKQYQNNKDKDKY--DYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDANHHGGPIQ 125

Query: 69  PPPISA------------EKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEIL 116
              IS             E++ +++ L+ KI+ LL++ E LGE G++ EA+ALM + + L
Sbjct: 126 QQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEELGEEGQITEAQALMTEADEL 185

Query: 117 NVEKTTL--TQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGM 174
             +K  L   +Q +N       + K+M++CEICG+ L   D  +R+ SH+ GK+HIG+  
Sbjct: 186 KNQKVELEKIEQEKN-------ENKRMSVCEICGALLFVGDKEKRSISHLEGKKHIGFQK 238

Query: 175 VRDFITEYKEAKEKA 189
           +R+ + EY ++  +A
Sbjct: 239 IREVMEEYYKSGRRA 253

May play a role in RNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 5   LDCIP------VKMCYYVCDCSFEKSPRHDAYVPK------FEAELAQFCEKLVMDLDRR 52
           LDC P       +M    C    + + R D  +        FE +     E  + + DRR
Sbjct: 41  LDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRR 100

Query: 53  VRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRK 112
               ++RL+ E +      +SA K+E++  L E+I  LL + E LG  G VDE++ ++ +
Sbjct: 101 TELAKKRLA-ETQEEISAEVSA-KAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILME 158

Query: 113 VEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGY 172
           VE +  +K    ++ +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+
Sbjct: 159 VEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGF 218

Query: 173 GMVRD 177
             +R+
Sbjct: 219 IQIRE 223

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 5   LDCIP------VKMCYYVCDCSFEKSPRHDAYVPK------FEAELAQFCEKLVMDLDRR 52
           LDC P       +M    C    + + R D  +        FE +     E  + + DRR
Sbjct: 41  LDCCPHDILAGTRMDLGECTKIHDLALRADYEIASKERDLFFELDAMDHLESFIAECDRR 100

Query: 53  VRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRK 112
               ++RL+ E +      +SA K+E++  L E+I  LL + E LG  G VDE++ ++ +
Sbjct: 101 TELAKKRLA-ETQEEISAEVSA-KAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILME 158

Query: 113 VEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGY 172
           VE +  +K    ++ +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+
Sbjct: 159 VEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGF 218

Query: 173 GMVRD 177
             +R+
Sbjct: 219 IQIRE 223

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 34  FEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQ 93
           FE +     +  + D DRR    ++RL++  E        A K+E++  L E+I  LL +
Sbjct: 82  FELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEV--AAKAERVHELNEEIGKLLAK 139

Query: 94  VETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVA 153
           VE LG  G V+E++ +M +VE    +K    +  +N       Q++K+ +CE+C ++L  
Sbjct: 140 VEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGL 199

Query: 154 NDAAERTQSHISGKQHIGYGMVRDFITEYK 183
           +D   R   H  GK H+G+  +R+ + E K
Sbjct: 200 HDNDRRLADHFGGKLHLGFIEIREKLEELK 229

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 2/150 (1%)

Query: 34  FEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQ 93
           FE +     +  + D DRR    ++RL++  E        A K+E++  L E+I  LL +
Sbjct: 82  FELDAMDHLQSFIADCDRRTEVSKKRLAETQEEISAEV--AAKAERVHELNEEIGKLLAK 139

Query: 94  VETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVA 153
           VE LG  G V+E++ +M +VE    +K    +  +N       Q++K+ +CE+C ++L  
Sbjct: 140 VEQLGAEGNVEESQKVMDEVEKARAKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGL 199

Query: 154 NDAAERTQSHISGKQHIGYGMVRDFITEYK 183
           +D   R   H  GK H+G+  +R+ + E K
Sbjct: 200 HDNDRRLADHFGGKLHLGFIEIREKLEELK 229

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q09217|YP68_CAEEL Uncharacterized protein B0495.8 OS=Caenorhabditis elegans GN=B0495.8 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 34  FEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQ 93
           ++ +  +  E  V  +D  + + RE+L  +V+        + K++Q++ +EEKI   ++ 
Sbjct: 81  YDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTSQAADS-KAKQVAEIEEKIAKNVDD 139

Query: 94  VETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMM--AQEKKMALCEICGSFL 151
           +E LG  GK++E+  L + VE L  EK    + SQ +       +   K+ +CE CG+ L
Sbjct: 140 IEKLGNEGKIEESMKLHKYVEELR-EKIQEIEDSQTEVKTAGPGSNSAKLRVCEDCGAQL 198

Query: 152 VANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREE 192
              D   R   H +GK HIG    R+   + KE  ++ R+E
Sbjct: 199 NITDHESRIADHYNGKMHIGMVETRETYLKMKETIDERRKE 239

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
255539781	348	Cisplatin resistance-associated overexpr	0.911	0.770	0.764	9e-92
217073848	344	unknown [Medicago truncatula]	0.901	0.770	0.746	7e-91
30524685	342	salt tolerance protein 3 [Beta vulgaris]	0.874	0.751	0.743	1e-90
297795951	334	hypothetical protein ARALYDRAFT_495212 [	0.894	0.787	0.721	3e-90
15242081	334	LUC7 N_terminus domain-containing protei	0.897	0.790	0.698	6e-86
225466119	358	PREDICTED: luc7-like protein 3-like [Vit	0.935	0.768	0.805	4e-85
449451769	347	PREDICTED: luc7-like protein 3-like [Cuc	0.806	0.682	0.800	2e-84
296084210	336	unnamed protein product [Vitis vinifera]	0.894	0.782	0.812	3e-84
449506483	347	PREDICTED: LOW QUALITY PROTEIN: luc7-lik	0.806	0.682	0.796	7e-84
363808290	346	uncharacterized protein LOC100792348 [Gl	0.904	0.768	0.771	7e-81

>gi|255539781|ref|XP_002510955.1| Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis] gi|223550070|gb|EEF51557.1| Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]

 Score =  342 bits (878), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 214/280 (76%), Positives = 239/280 (85%), Gaps = 12/280 (4%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
            FEKSPRHD Y+PKFEAELAQ CEKLVMDLDRRVRRGRERL+Q  EP PPPP+SAEKSEQ
Sbjct: 71  GFEKSPRHDRYLPKFEAELAQRCEKLVMDLDRRVRRGRERLAQGEEPIPPPPMSAEKSEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSV+EEKIKNLL QVE+LGEAGKVDEA+ALM+KV+ LN EK  +  Q Q+DKVLM+ QEK
Sbjct: 131 LSVVEEKIKNLLVQVESLGEAGKVDEAQALMKKVDELNAEKALI--QLQSDKVLMIPQEK 188

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCEICGSFLVANDAAERTQSH+ GKQHIGYGMVRDFITEYK AKEKA+E+ERLA+EK
Sbjct: 189 KMALCEICGSFLVANDAAERTQSHVVGKQHIGYGMVRDFITEYKAAKEKAKEDERLAREK 248

Query: 200 EVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRE--RERYRERDRERSREWDGRSGRDG 257
           E E+RRK REKEYE R+RSGS+DRDR  DRDRDRE  R + RER RERSREW+GR   DG
Sbjct: 249 EAEERRKLREKEYE-RRRSGSNDRDRSHDRDRDRESHRFQERERGRERSREWNGRGSGDG 307

Query: 258 GRGADWRS-------RDRHRDRSRSRSPVRHGHRRSPRSP 290
           G+  DWRS       RD++R+ SRSRSPVRHGH+RS RSP
Sbjct: 308 GKRMDWRSRNGRDSGRDKYREWSRSRSPVRHGHKRSSRSP 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073848|gb|ACJ85284.1| unknown [Medicago truncatula]

 Score =  339 bits (870), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 206/276 (74%), Positives = 244/276 (88%), Gaps = 11/276 (3%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           +FE SPRHDAYVPKFEA+LAQFCEKLVMDLDRRV+RGRERL+QEVE  PPPP++AEKSEQ
Sbjct: 71  NFENSPRHDAYVPKFEADLAQFCEKLVMDLDRRVKRGRERLNQEVELPPPPPLTAEKSEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN EK  LTQ  QN+KVLM+ QEK
Sbjct: 131 LSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNTEKAVLTQ-PQNEKVLML-QEK 188

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCE+CGSFLVANDAAERTQSH++GKQH+GYGMVRDFI E+K AKEKA+EEERL +EK
Sbjct: 189 KMALCEVCGSFLVANDAAERTQSHVAGKQHVGYGMVRDFINEHKIAKEKAKEEERLTREK 248

Query: 200 EVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRER--DRERSREWDGRSGRDG 257
           EVE+RRKQ+E++ E ++RS SSDR++YRD+DRDR+R+RYR++  +RERSRE++GR  RD 
Sbjct: 249 EVEERRKQKEQDPERKRRSDSSDREKYRDKDRDRQRDRYRDKDSERERSREYEGRGNRDR 308

Query: 258 GRGADWR-------SRDRHRDRSRSRSPVRHGHRRS 286
           GRG  +R       SRDR+ +RSRSRSP++H +RRS
Sbjct: 309 GRGMVFRLRNEKNGSRDRYHNRSRSRSPIKHNYRRS 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30524685|emb|CAC85244.1| salt tolerance protein 3 [Beta vulgaris]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 209/281 (74%), Positives = 229/281 (81%), Gaps = 24/281 (8%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           SFE SPRHD+YVP+FEAELAQFCEKLV DLDR+VRRGRERL QEVEP PPPPISAEK+EQ
Sbjct: 71  SFENSPRHDSYVPRFEAELAQFCEKLVADLDRKVRRGRERLDQEVEPPPPPPISAEKAEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN+EK  LTQQ QN    M+ QEK
Sbjct: 131 LSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVESLNLEKAALTQQPQN-AATMLTQEK 189

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCEICGSFLVANDA ERTQSHI+GKQHIGYGMVRD++ EYKEAKEKAREEERLA+EK
Sbjct: 190 KMALCEICGSFLVANDAVERTQSHITGKQHIGYGMVRDYLAEYKEAKEKAREEERLAREK 249

Query: 200 EVEDRRKQREKEYESR-KRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGG 258
           E E+RRKQREKE ES+ +RS SS+RDR+RDRD  R        DRERSREW+ R  RD G
Sbjct: 250 EAEERRKQREKENESKNRRSISSERDRHRDRDYGR--------DRERSREWNNRGNRDEG 301

Query: 259 RGADWRSR-DRH-RDRSRS------------RSPVRHGHRR 285
           RG D R + DR+ RD  R+            RSPVRHGHRR
Sbjct: 302 RGMDRRRQYDRNGRDGGRNTYHGRERERSRSRSPVRHGHRR 342

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795951|ref|XP_002865860.1| hypothetical protein ARALYDRAFT_495212 [Arabidopsis lyrata subsp. lyrata] gi|297311695|gb|EFH42119.1| hypothetical protein ARALYDRAFT_495212 [Arabidopsis lyrata subsp. lyrata]

 Score =  337 bits (865), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/276 (72%), Positives = 224/276 (81%), Gaps = 13/276 (4%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           SFE SPRHD+YVPKFEAELAQFCEKLV DLDR+VRRGRERL+QEVEP PPP +SAEK+EQ
Sbjct: 71  SFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPPPPPSLSAEKAEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEK+KNLLEQVE LGE GKVDEAEALMRKVE LN EKT L Q+   DKVL MAQEK
Sbjct: 131 LSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNTEKTVLLQRP-TDKVLAMAQEK 189

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCE+CGSFLVANDA ERTQSH++GKQH+GYG+VRDFI E K AK+K +EEERL + K
Sbjct: 190 KMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKGKEEERLVRGK 249

Query: 200 EVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGR 259
           E +D+RK REKE ES KRSGSSDR+ YRDRDRDR+ +R+R+R R+  +  D RS      
Sbjct: 250 EADDKRKPREKESES-KRSGSSDRESYRDRDRDRDGDRHRDRGRDHRKPHDRRS------ 302

Query: 260 GADWRSRDRHRDRSRSRSP-VRHGHRRSPRSPVRQY 294
               RS    RDRSRSRSP  R GHRR  RSP+RQY
Sbjct: 303 ----RSGREGRDRSRSRSPHGRSGHRRVSRSPIRQY 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242081|ref|NP_199954.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|30696048|ref|NP_851170.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|334188317|ref|NP_001190514.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|1699023|gb|AAB68037.1| putative arginine-aspartate-rich RNA binding protein [Arabidopsis thaliana] gi|1699051|gb|AAB68040.1| putative aspartate-arginine-rich mRNA binding protein [Arabidopsis thaliana] gi|9759287|dbj|BAB09752.1| arginine-aspartate-rich RNA binding protein-like [Arabidopsis thaliana] gi|18377714|gb|AAL67007.1| putative arginine-aspartate-rich RNA binding protein [Arabidopsis thaliana] gi|22136854|gb|AAM91771.1| putative arginine-aspartate-rich RNA binding protein [Arabidopsis thaliana] gi|332008693|gb|AED96076.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|332008694|gb|AED96077.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|332008695|gb|AED96078.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana]

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 192/275 (69%), Positives = 219/275 (79%), Gaps = 11/275 (4%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           SFE SPRHD+YVPKFEAELAQFCEKLV DLDR+VRRGRERL+QEVEP PPP +SAEK+EQ
Sbjct: 71  SFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPVPPPSLSAEKAEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEK+KNLLEQVE LGE GKVDEAEALMRKVE LN EKT L Q+   DKVL MAQEK
Sbjct: 131 LSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLLQRP-TDKVLAMAQEK 189

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCE+CGSFLVANDA ERTQSH++GKQH+GYG+VRDFI E K AK+K +EEERL + K
Sbjct: 190 KMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKGKEEERLVRGK 249

Query: 200 EVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGR 259
           E +D+RK REKE ES KRSGSSDR+RYRDRDR+R+ +R+R+R R+  + +D RS R G  
Sbjct: 250 EADDKRKPREKESES-KRSGSSDRERYRDRDRNRDGDRHRDRGRDYRKPYDRRS-RSGRE 307

Query: 260 GADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQY 294
             D         RS        GHRR  RSP+RQY
Sbjct: 308 DRDRSRSRSPHGRS--------GHRRVSRSPIRQY 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466119|ref|XP_002267755.1| PREDICTED: luc7-like protein 3-like [Vitis vinifera]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 232/288 (80%), Positives = 249/288 (86%), Gaps = 13/288 (4%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           SFEKSPRHD+YVP+FEAEL+QFCEKLVMDLDRRVRRGRERL+QEVE APP P+S EKSEQ
Sbjct: 71  SFEKSPRHDSYVPRFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEAAPPAPLSLEKSEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKVE+LN EKT LTQQ QNDKVLM+AQEK
Sbjct: 131 LSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQPQNDKVLMLAQEK 190

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCE CGSFLVANDAAERTQSH++GKQHIGYGMVRDFITEYKEAKEKAREEERL +EK
Sbjct: 191 KMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEYKEAKEKAREEERLKREK 250

Query: 200 EVEDRRKQREKEYESRKR---SGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRD 256
           E E+RRKQREKE ESR R   SG  DR R RDRDR+R+R R RERDRER REW+GR  RD
Sbjct: 251 EAEERRKQREKESESRSRRADSGDRDRTRDRDRDRERDRYRERERDRERPREWNGRGYRD 310

Query: 257 GGRGADWRSRD----------RHRDRSRSRSPVRHGHRRSPRSPVRQY 294
           GGRG DWR  +          R+RDRSRSRSPVRH HRRSP+SPVR Y
Sbjct: 311 GGRGTDWRYSNSRDGRDGGRDRYRDRSRSRSPVRHSHRRSPQSPVRPY 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451769|ref|XP_004143633.1| PREDICTED: luc7-like protein 3-like [Cucumis sativus]

 Score =  318 bits (814), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 201/251 (80%), Positives = 222/251 (88%), Gaps = 14/251 (5%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL+QEVEPAPP P+SAEKSEQ
Sbjct: 71  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEPAPPTPLSAEKSEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKV++LN EKT LTQQ+QNDKVLM+AQEK
Sbjct: 131 LSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVDLLNTEKTALTQQTQNDKVLMLAQEK 190

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCEICGSFLVANDAAER QSH++GKQH+GYGMVRDFI+E+KEAKEKAREEERLA+EK
Sbjct: 191 KMALCEICGSFLVANDAAERVQSHVTGKQHVGYGMVRDFISEHKEAKEKAREEERLAREK 250

Query: 200 EVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRE------------RSR 247
           E E+R+KQRE E+E RKR G S  D+YRDR+RDR+R RYRERDR+            R  
Sbjct: 251 EAEERKKQRE-EFERRKR-GDSSEDKYRDRERDRDRNRYRERDRDRERSRRGGRDEIRGM 308

Query: 248 EWDGRSGRDGG 258
           +W  R+GRDGG
Sbjct: 309 DWRSRNGRDGG 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084210|emb|CBI24598.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 226/278 (81%), Positives = 242/278 (87%), Gaps = 15/278 (5%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           SFEKSPRHD+YVP+FEAEL+QFCEKLVMDLDRRVRRGRERL+QEVE APP P+S EKSEQ
Sbjct: 71  SFEKSPRHDSYVPRFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEAAPPAPLSLEKSEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKVE+LN EKT LTQQ QNDKVLM+AQEK
Sbjct: 131 LSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQPQNDKVLMLAQEK 190

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCE CGSFLVANDAAERTQSH++GKQHIGYGMVRDFITEYKEAKEKAREEERL +EK
Sbjct: 191 KMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEYKEAKEKAREEERLKREK 250

Query: 200 EVEDRRKQREKEYESRKR---SGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRD 256
           E E+RRKQREKE ESR R   SG  DR R RDRDR+R+R R RERDRER REW+     D
Sbjct: 251 EAEERRKQREKESESRSRRADSGDRDRTRDRDRDRERDRYRERERDRERPREWN-----D 305

Query: 257 GGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQY 294
           GG       RDR+RDRSRSRSPVRH HRRSP+SPVR Y
Sbjct: 306 GG-------RDRYRDRSRSRSPVRHSHRRSPQSPVRPY 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506483|ref|XP_004162762.1| PREDICTED: LOW QUALITY PROTEIN: luc7-like protein 3-like [Cucumis sativus]

 Score =  316 bits (810), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 200/251 (79%), Positives = 221/251 (88%), Gaps = 14/251 (5%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL+QEVEPAPP P+SAEKSEQ
Sbjct: 71  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEPAPPTPLSAEKSEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKV++LN EKT LTQQ+QNDKVLM+AQE 
Sbjct: 131 LSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVDLLNTEKTALTQQTQNDKVLMLAQEX 190

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCEICGSFLVANDAAER QSH++GKQH+GYGMVRDFI+E+KEAKEKAREEERLA+EK
Sbjct: 191 KMALCEICGSFLVANDAAERVQSHVTGKQHVGYGMVRDFISEHKEAKEKAREEERLAREK 250

Query: 200 EVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRE------------RSR 247
           E E+R+KQRE E+E RKR G S  D+YRDR+RDR+R RYRERDR+            R  
Sbjct: 251 EAEERKKQRE-EFERRKR-GDSSEDKYRDRERDRDRNRYRERDRDRERSRRGGRDEIRGM 308

Query: 248 EWDGRSGRDGG 258
           +W  R+GRDGG
Sbjct: 309 DWRSRNGRDGG 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808290|ref|NP_001241987.1| uncharacterized protein LOC100792348 [Glycine max] gi|255641887|gb|ACU21212.1| unknown [Glycine max]

 Score =  306 bits (784), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 213/276 (77%), Positives = 236/276 (85%), Gaps = 10/276 (3%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
           SFEKSPRHDAYVPKFEAEL+QFCEKLVMDLDRRVRRGRERL+QEVEP PPPP++AEKSEQ
Sbjct: 71  SFEKSPRHDAYVPKFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEPTPPPPLTAEKSEQ 130

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
           LSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN EKT LTQ  QNDKVLM+ QEK
Sbjct: 131 LSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNAEKTALTQ-PQNDKVLMLGQEK 189

Query: 140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEK 199
           KMALCEICGSFLVANDAAERTQSH++GKQH+GYGMVRDFI E+K AKEKA EEERLA+E+
Sbjct: 190 KMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFINEFKTAKEKANEEERLARER 249

Query: 200 EVEDRRKQREKEYE--SRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDG 257
           E E+RRKQREKE E   R  S   DR R +D +R+R+R R R+ DRERSRE D R  RDG
Sbjct: 250 EAEERRKQREKESERGRRSDSSDRDRHRDKDHNRERDRYRDRDSDRERSREHDVRGYRDG 309

Query: 258 GRGADWRSRD-------RHRDRSRSRSPVRHGHRRS 286
           GRG D+R+R+       R+RDRSRSRSP +H HRRS
Sbjct: 310 GRGVDYRARNGRNGGRDRYRDRSRSRSPGKHSHRRS 345

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2163640	334	AT5G51410 "AT5G51410" [Arabido	0.649	0.571	0.687	1.8e-68
UNIPROTKB|B4DJ96	356	LUC7L3 "Luc7-like protein 3" [	0.482	0.398	0.331	7.8e-20
UNIPROTKB|Q3SX41	432	LUC7L3 "Luc7-like protein 3" [	0.520	0.354	0.329	1.5e-19
UNIPROTKB|O95232	432	LUC7L3 "Luc7-like protein 3" [	0.520	0.354	0.329	1.5e-19
UNIPROTKB|F1RTB6	432	LUC7L3 "Uncharacterized protei	0.520	0.354	0.329	1.5e-19
UNIPROTKB|Q5R8W6	432	LUC7L3 "Luc7-like protein 3" [	0.520	0.354	0.329	1.5e-19
MGI|MGI:1914934	432	Luc7l3 "LUC7-like 3 (S. cerevi	0.520	0.354	0.329	1.5e-19
UNIPROTKB|E1C6U8	434	LUC7L3 "Uncharacterized protei	0.520	0.352	0.329	1.5e-19
RGD|1307981	477	Luc7l3 "LUC7-like 3 (S. cerevi	0.520	0.320	0.329	2.1e-19
FB|FBgn0029887	438	CG3198 [Drosophila melanogaste	0.142	0.095	0.5	5.9e-17

TAIR|locus:2163640 AT5G51410 "AT5G51410" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 1.8e-68, Sum P(2) = 1.8e-68
 Identities = 132/192 (68%), Positives = 144/192 (75%)

Query:    20 SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVEPAPPPPISAEKSEQ 79
             SFE SPRHD+YVPKFEAELAQFCEKLV DLD         L+QEVEP PPP +SAEK+EQ
Sbjct:    71 SFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPVPPPSLSAEKAEQ 130

Query:    80 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEK 139
             LSVLEEK+KNLLEQVE LGE GKVDEAEALMRKVE LN EKT L Q+   DKVL MAQEK
Sbjct:   131 LSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLLQRP-TDKVLAMAQEK 189

Query:   140 KMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITXXXXXXXXXXXXXXXXXXX 199
             KMALCE+CGSFLVANDA ERTQSH++GKQH+GYG+VRDFI                    
Sbjct:   190 KMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKGKEEERLVRGK 249

Query:   200 XXXDRRKQREKE 211
                D+RK REKE
Sbjct:   250 EADDKRKPREKE 261

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B4DJ96 LUC7L3 "Luc7-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 236 (88.1 bits), Expect = 7.8e-20, P = 7.8e-20
 Identities = 48/145 (33%), Positives = 82/145 (56%)

Query:    34 FEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLL 91
             +E +  ++ + L+ +++           LSQ  + +     + +  E++ VL +KI  LL
Sbjct:     5 YERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLL 64

Query:    92 EQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFL 151
             +Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQEK+M +CE+CG+FL
Sbjct:    65 QQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQEKQMEVCEVCGAFL 123

Query:   152 VANDAAERTQSHISGKQHIGYGMVR 176
             +  DA  R   H+ GKQH+GY  ++
Sbjct:   124 IVGDAQSRVDDHLMGKQHMGYAKIK 148

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|Q3SX41 LUC7L3 "Luc7-like protein 3" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/158 (32%), Positives = 87/158 (55%)

Query:    21 FEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPISAEKSE 78
             +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E
Sbjct:    70 YEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query:    79 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
             ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct:   128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query:   139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 176
             K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0008380 "RNA splicing" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0016607 "nuclear speck" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|O95232 LUC7L3 "Luc7-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/158 (32%), Positives = 87/158 (55%)

Query:    21 FEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPISAEKSE 78
             +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E
Sbjct:    70 YEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query:    79 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
             ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct:   128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query:   139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 176
             K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003677 "DNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0006950 "response to stress" evidence=IMP

GO:0008380 "RNA splicing" evidence=IMP

GO:0003729 "mRNA binding" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|F1RTB6 LUC7L3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 238 (88.8 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/158 (32%), Positives = 87/158 (55%)

Query:    21 FEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPISAEKSE 78
             +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E
Sbjct:    70 YEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query:    79 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
             ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct:   128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query:   139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 176
             K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0008380 "RNA splicing" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|Q5R8W6 LUC7L3 "Luc7-like protein 3" [Pongo abelii (taxid:9601)]

 Score = 238 (88.8 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/158 (32%), Positives = 87/158 (55%)

Query:    21 FEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPISAEKSE 78
             +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E
Sbjct:    70 YEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query:    79 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
             ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct:   128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query:   139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 176
             K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003729 "mRNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

MGI|MGI:1914934 Luc7l3 "LUC7-like 3 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 238 (88.8 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/158 (32%), Positives = 87/158 (55%)

Query:    21 FEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPISAEKSE 78
             +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E
Sbjct:    70 YEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query:    79 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
             ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct:   128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query:   139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 176
             K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

UNIPROTKB|E1C6U8 LUC7L3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/158 (32%), Positives = 87/158 (55%)

Query:    21 FEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPISAEKSE 78
             +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E
Sbjct:    70 YEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query:    79 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
             ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct:   128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query:   139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 176
             K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

RGD|1307981 Luc7l3 "LUC7-like 3 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 52/158 (32%), Positives = 87/158 (55%)

Query:    21 FEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPISAEKSE 78
             +EKS R       +E +  ++ + L+ +++           LSQ  + +     + +  E
Sbjct:    70 YEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPTGKNEE 127

Query:    79 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQE 138
             ++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +    AQE
Sbjct:   128 KIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESFA-AQE 186

Query:   139 KKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 176
             K+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   187 KQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005925 "focal adhesion" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0029887 CG3198 [Drosophila melanogaster (taxid:7227)]

 Score = 135 (52.6 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query:   138 EKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFI 179
             EK+M +CEICG+FL+  DA +R + H+ GKQH+GY  +R+ +
Sbjct:   275 EKQMKVCEICGAFLIVGDAQQRIEDHLMGKQHLGYSKLRNAV 316

GO:0005685 "U1 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
pfam03194	252	pfam03194, LUC7, LUC7 N_terminus	1e-47
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-11
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-09
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-07
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	9e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-06
COG5200	258	COG5200, LUC7, U1 snRNP component, mediates U1 snR	1e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-06
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	5e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	7e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	9e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-04
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	1e-04
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	4e-04
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	5e-04
pfam08648	158	pfam08648, DUF1777, Protein of unknown function (D	0.001
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
PLN02316	1036	PLN02316, PLN02316, synthase/transferase	0.003

>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus

 Score =  159 bits (404), Expect = 1e-47
 Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 6/182 (3%)

Query: 20  SFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQ 79
            +E++ +   Y P +E E  +  E+ V D DR++ + ++RL    E        ++  E+
Sbjct: 67  DYERASKSQDYFP-YEVEALEILERFVHDCDRKIDKAKQRLELTQEEQTKIAADSKA-EE 124

Query: 80  LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQ---NDKVLMMA 136
           L+ L+E+I  LL + E LGE GKVDEA  LM++VE L  +K  L    +          A
Sbjct: 125 LAELDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELKAKKKELEDSDEVRNAAPSSAQA 184

Query: 137 QEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLA 196
           Q++K+ +CE+CG++L   D   R   H  GK H+GY  VR+ + E KEAK K R +ER  
Sbjct: 185 QQQKLRVCEVCGAYLSRLDNDRRLADHFGGKLHLGYVKVREKLAELKEAKAK-RRKEREE 243

Query: 197 KE 198
           + 
Sbjct: 244 RG 245

This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP). Length = 252

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 211 EYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHR 270
           E   R+R  S  RDR R  +R R R R R R R+R R       R+     D R RDR R
Sbjct: 3   EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRR-----SRERSYREDSRPRDRRR 57

Query: 271 DRSRSRSPVRHGHRRSPRSPVRQ 293
             SRS   +R+   R  R   R+
Sbjct: 58  YDSRSPRSLRYSSVRRSRDRPRR 80

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 42/114 (36%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 181 EYKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRE 240
           E    +EK+R  +R        DR  +R      R+RS    R R R R       R   
Sbjct: 4   EPDREREKSRGRDR--------DRSSER-----PRRRSRDRSRFRDRHRRSRERSYREDS 50

Query: 241 RDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRS-RSPVRHGHRRSPRSPVRQ 293
           R R+R R  D RS R     +  RSRDR R RSRS RS  +H  R   RSP  Q
Sbjct: 51  RPRDRRRY-DSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQ 103

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 187 EKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERS 246
            +  E  R   +++  DRR+Q ++  E  +R G   R R R RDR   R      DR   
Sbjct: 191 GRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDR-GD 249

Query: 247 REWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVR 280
           R+ D   GR G RG  +R RDR   R       R
Sbjct: 250 RDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 184 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 243
           +A E+  EEER  + +  +   +Q E E   R R     RD   DRDR   RE+   R+ 
Sbjct: 159 DAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDG-DDRDRRDRREQGDRREE 217

Query: 244 ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRS 289
              R+   R GR   R       D +R+    R       R   R 
Sbjct: 218 RGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263

Length = 672

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 215 RKRSGSSDRDRYRDRDRD--RERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDR 272
           R R     R R   R  D  RER R R R R+RSR    R  RD  RG   RSR R    
Sbjct: 1   RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRR---RRDRDYYRGRRGRSRSR-SPN 56

Query: 273 SRSRSPVRHGHRRSPRSPVRQ 293
              R      +RR  R   R 
Sbjct: 57  RYYRPRGDRSYRRDDRRSGRN 77

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 186 KEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRER 245
             +AR +     E+E  D R++R    + +  +   +R R  +R RD +    R   RE+
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRD-RRDRREQ 211

Query: 246 SREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRR 285
               + R  RDGG     R R   RD     +    G R 
Sbjct: 212 GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRD 251

Length = 672

>gnl|CDD|227527 COG5200, LUC7, U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 4/161 (2%)

Query: 34  FEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQ 93
           +E E  +   ++V+  +  +R           P     I  EK E  + ++E I  L  +
Sbjct: 80  YEWEYLRLLVRIVLSCNDGIRAAGLED--RTTPEEFGKIK-EKEELFNRVDESIGELGME 136

Query: 94  VETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN-DKVLMMAQEKKMALCEICGSFLV 152
            + L +   V+ A +   ++E L  E+  + +   +  +       +K+ +C ICG++L 
Sbjct: 137 GDALAKRKLVERACSAFNELERLREERKEIKEAVYSMVENNGQGTHQKLQVCGICGAYLS 196

Query: 153 ANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEE 193
             D   R   H +GK H+GY +VR  + +  +    +R  E
Sbjct: 197 RLDTDRRLADHFNGKLHLGYLLVRSDLADLLKKFGISRVAE 237

Length = 258

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 37/103 (35%)

Query: 184 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 243
             +         A++      +   E   ++ +R+   +RD  R R    +R+   ER  
Sbjct: 130 RRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGE 189

Query: 244 ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRS 286
              RE  GR G D  R       DR  +R R     R G RR 
Sbjct: 190 RGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRR 232

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 22/90 (24%), Positives = 34/90 (37%)

Query: 183 KEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERD 242
           +  +E+  E  R    ++ +   ++ E+     +     DRDR   R++   RE    RD
Sbjct: 163 RTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRD 222

Query: 243 RERSREWDGRSGRDGGRGADWRSRDRHRDR 272
               R    R  R   RG D R     RD 
Sbjct: 223 GGDRRGRRRRRDRRDARGDDNREDRGDRDG 252

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 21/101 (20%), Positives = 33/101 (32%)

Query: 184 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 243
             +     E R   E       ++  +  E       +D     + +   ER R  +R+ 
Sbjct: 121 APEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRED 180

Query: 244 ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHR 284
            ++    G  GR   RG D   RDR   R +       G R
Sbjct: 181 RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221

Length = 672

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 13/116 (11%)

Query: 176 RDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKE-YESRKRSGSSDRDRYRDRDRDRE 234
            D   E    +++ R  ER  +      R + R +   E   R  S  RDR R   R   
Sbjct: 5   PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPR 64

Query: 235 RERY----RERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRS 286
             RY    R RDR R R    RS          + R R RDRS S    +   +RS
Sbjct: 65  SLRYSSVRRSRDRPRRRSRSVRSIE--------QHRRRLRDRSPSNQWRKDDKKRS 112

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.8 bits (112), Expect = 7e-06
 Identities = 23/105 (21%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 189 AREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSRE 248
           AR+     ++   E R    E+  E  +       DR  DR  + ER     R+      
Sbjct: 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDR-EDRQAEAERGERGRREERGRDG 200

Query: 249 WDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQ 293
            D        +G   R     RD    R   R   RR  R    +
Sbjct: 201 DDRDRRDRREQGDR-REERGRRDGGDRRGRRRRRDRRDARGDDNR 244

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 1/106 (0%)

Query: 184 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDR-ERERYRERD 242
             + +A   ER  +E+  E RR+   ++ ++    G   R   R RD D  +R   RE+ 
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212

Query: 243 RERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPR 288
             R        G   GR      RD   D +R     R G     R
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGR 258

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 20/103 (19%), Positives = 28/103 (27%)

Query: 183 KEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERD 242
             A          A +      R +  +   +RK     ++     R    ER    ERD
Sbjct: 111 AAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERD 170

Query: 243 RERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRR 285
             R R        +  RG   R  +R RD        R     
Sbjct: 171 ERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGD 213

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/102 (20%), Positives = 32/102 (31%)

Query: 184 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 243
           E +   R      ++++ E  R +R +  E  +     DR   R++   RE    R+   
Sbjct: 166 EEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGD 225

Query: 244 ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRR 285
            R R          G        DR  D    R   R    R
Sbjct: 226 RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFR 267

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 3/109 (2%)

Query: 183 KEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDR--DRYRDRDRDRERERYRE 240
           ++A E   +    A+    E   ++   E   R          +R     R+       +
Sbjct: 143 RKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDD 202

Query: 241 RDRERSREWDGRSGRDGGR-GADWRSRDRHRDRSRSRSPVRHGHRRSPR 288
           RDR   RE   R    G R G D R R R RDR  +R       R    
Sbjct: 203 RDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRD 251

Length = 672

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 204 RRKQREKEYESRKRSGSSDRDRYRDRDRDRERER-YRERDRERSREWDGRSGRDGGRGAD 262
           R + RE+    R  +  SD+ R R R R R R+R  R RDR+  R   GR GR   R  +
Sbjct: 1   RYRDRERG-RLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYR---GRRGRSRSRSPN 56

Query: 263 WRSRDRHRDRSR--SRSPVR 280
              R R     R   R   R
Sbjct: 57  RYYRPRGDRSYRRDDRRSGR 76

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 183 KEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERER----- 237
              +E+ R      +  +  +R ++R +  +  +R    DRD YR R   R R R     
Sbjct: 2   YRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRR--RDRDYYRGRRG-RSRSRSPNRY 58

Query: 238 YRERDRERSREWDGRSGRD 256
           YR R     R  D RSGR+
Sbjct: 59  YRPRGDRSYRRDDRRSGRN 77

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 235 RERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVR 292
           R+   +R+RE+SR  D     +       R R R RDRSR R   R    RS R   R
Sbjct: 1   RDEEPDREREKSRGRDRDRSSE-------RPRRRSRDRSRFRDRHRRSRERSYREDSR 51

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 36/76 (47%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 214 SRKRSGSSDRDRYRDRDRDRER-ERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDR 272
            R RS S  R R R R R R+R ER RER R R R+   RS R        RSR   R R
Sbjct: 2   GRSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRS-RSRSPHRSRRSRSPRRHR 60

Query: 273 SRSRSPVRHGHRRSPR 288
           SRSRSP R   R+  R
Sbjct: 61  SRSRSPSRRRDRKRER 76

This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 206 KQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGAD 262
           K+RE+  E  KR         R+R++++E+ER RER+RE  R     S     R ++
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSE 635

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 38.9 bits (90), Expect = 0.003
 Identities = 18/50 (36%), Positives = 35/50 (70%), Gaps = 5/50 (10%)

Query: 194 RLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 243
           +LAK++E    + +RE E ++R+     +R+R ++++++RERER RE +R
Sbjct: 576 KLAKKREEAVEKAKREAEQKARE-----EREREKEKEKEREREREREAER 620

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 185 AKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRE 244
            +EK RE E+LAKE+   +R+ + ++  E  K +  +DR + +      E E+ RE+ + 
Sbjct: 251 LEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAK-----AEVEKRREKLQN 305

Length = 1036

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG0796	319	consensus Spliceosome subunit [RNA processing and	100.0
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	100.0
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	100.0
KOG0796	319	consensus Spliceosome subunit [RNA processing and	95.68
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	93.61
KOG2888	453	consensus Putative RNA binding protein [General fu	93.56
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	91.77
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	91.46
PRK02224	880	chromosome segregation protein; Provisional	91.07
PHA02562	562	46 endonuclease subunit; Provisional	90.56
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.15
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	89.93
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	89.01
PRK14143	238	heat shock protein GrpE; Provisional	87.62
PRK01156	895	chromosome segregation protein; Provisional	86.94
PRK06835	329	DNA replication protein DnaC; Validated	86.13
KOG4368	757	consensus Predicted RNA binding protein, contains	86.12
PRK14158	194	heat shock protein GrpE; Provisional	85.89
PRK14144	199	heat shock protein GrpE; Provisional	85.22
PRK15058	128	cytochrome b562; Provisional	84.75
PF04032	85	Rpr2: RNAse P Rpr2/Rpp21/SNM1 subunit domain; Inte	83.36
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	83.33
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	82.3

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=100.00  E-value=9.5e-56  Score=412.37  Aligned_cols=181  Identities=36%  Similarity=0.608  Sum_probs=158.6

Q ss_pred             CCCccccccCChhHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHH
Q 022656            4 HLDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVL   83 (294)
Q Consensus         4 ~~~~~~~~~~~~~lK~~Ye~~~~~~~~~~~YE~e~l~~L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~~~~~~e~i~~l   83 (294)
                      +|.|-| +||+++||++|+.+++..+|  +||++|+.+|+.||.+|+++|+++++||+++.++  .......++++|..|
T Consensus        53 dlg~C~-kvHd~~lk~~Ye~~~k~~~~--~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee--~~~e~~~k~~~v~~l  127 (319)
T KOG0796|consen   53 DLGPCP-KVHDEALKADYERASKERDY--GYEWDALEILERFVADVDRRIEKAKERLAETVEE--RSEEAARKAEKVHEL  127 (319)
T ss_pred             ccCccc-chhhHHHHHHHhhchHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHH
Confidence            444444 89999999999999999999  9999999999999999999999999999987532  223344457889999


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhhhccccccccccccccCCchHHHHh
Q 022656           84 EEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNV-EKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQS  162 (294)
Q Consensus        84 ~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~-er~~l~~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~D~d~Rl~d  162 (294)
                      +++|+.|+++||+||++|+|++||++|.+||.|++ ++..++.+++.+.+.+.+++|||+||+||||||+++||++||||
T Consensus       128 ~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~d~RlaD  207 (319)
T KOG0796|consen  128 EEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVNDADRRLAD  207 (319)
T ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccchHHHHHH
Confidence            99999999999999999999999999999999997 66666666633344456799999999999999999999999999


Q ss_pred             hhcccccccHHHHHHHHHHHHHHHHHH
Q 022656          163 HISGKQHIGYGMVRDFITEYKEAKEKA  189 (294)
Q Consensus       163 H~~GK~HlGy~kIRe~l~eL~~~~~~~  189 (294)
                      ||+|||||||++||++|.+|++.....
T Consensus       208 Hf~GKlHlGy~~iR~~l~eLk~~~~~~  234 (319)
T KOG0796|consen  208 HFGGKLHLGYVLIREKLAELKKEKAKR  234 (319)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999999999986554

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=100.00  E-value=5.9e-52  Score=382.69  Aligned_cols=180  Identities=37%  Similarity=0.650  Sum_probs=158.0

Q ss_pred             CCccccccCChhHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHH
Q 022656            5 LDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLE   84 (294)
Q Consensus         5 ~~~~~~~~~~~~lK~~Ye~~~~~~~~~~~YE~e~l~~L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~~~~~~e~i~~l~   84 (294)
                      |---| +||+++||++|++++++..++ +||++|+.+|+.||.+||++|++|++||+.+++..+ .......+++|..|+
T Consensus        53 LG~C~-kiHd~~lk~~Ye~~~~~~~~~-~YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~-~~~~~~~~~~i~~l~  129 (254)
T PF03194_consen   53 LGPCP-KIHDEALKAEYEKASKKEKYG-GYEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQA-KEADEEKAEKIDELD  129 (254)
T ss_pred             cchhh-hhcCHHHHHHHHhCccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-cchhhhHHHHHHHHH
Confidence            33335 899999999999999998885 699999999999999999999999999998764322 223333588999999


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH---hhhhh--hhhhhhhhhccccccccccccccCCchHH
Q 022656           85 EKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ---QSQND--KVLMMAQEKKMALCEICGSFLVANDAAER  159 (294)
Q Consensus        85 ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~er~~l~~---~~~~~--~~~~~~~~qkm~VCeVCGA~Ls~~D~d~R  159 (294)
                      ++|+.||++||+||++|+|++|+++|.+|+.|+++++.|++   ++ .+  .++.++++|+|+||+|||||||++||++|
T Consensus       130 ~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~~~~~~-~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~R  208 (254)
T PF03194_consen  130 EKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEKELEEY-RNSIENSAQSQQQKLEVCEVCGAFLSVGDNDRR  208 (254)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhhhcccccCccchhhhhhHHhccchHHH
Confidence            99999999999999999999999999999999999999998   33 22  22334689999999999999999999999


Q ss_pred             HHhhhcccccccHHHHHHHHHHHHHHHHH
Q 022656          160 TQSHISGKQHIGYGMVRDFITEYKEAKEK  188 (294)
Q Consensus       160 l~dH~~GK~HlGy~kIRe~l~eL~~~~~~  188 (294)
                      |+|||+|||||||++||++|++|++...+
T Consensus       209 ladH~~GK~HlGy~~IR~~l~el~e~~~~  237 (254)
T PF03194_consen  209 LADHFGGKQHLGYAKIREKLKELKEKREE  237 (254)
T ss_pred             HHHHhccchhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998655

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-35  Score=263.04  Aligned_cols=174  Identities=22%  Similarity=0.316  Sum_probs=144.5

Q ss_pred             CCccccccCChhHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHH
Q 022656            5 LDCIPVKMCYYVCDCSFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLE   84 (294)
Q Consensus         5 ~~~~~~~~~~~~lK~~Ye~~~~~~~~~~~YE~e~l~~L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~~~~~~e~i~~l~   84 (294)
                      |---| ++|.+-+|++||.+.....+  +|||+|+..|.++|.+|+..|..|-.++..+++   ....+.++.+.+..+.
T Consensus        54 lGkCp-~~H~~k~K~~YeR~~~~~~~--~yEweyl~~L~r~V~~cn~~I~~a~~~~~~t~e---e~~kI~e~~e~~~~~d  127 (258)
T COG5200          54 LGKCP-TSHEEKYKAEYERNGRERAE--EYEWEYLRLLVRIVLSCNDGIRAAGLEDRTTPE---EFGKIKEKEELFNRVD  127 (258)
T ss_pred             cCCCc-chhHHHHHHHHhhhhhccch--hhhHHHHHHHHHHHHHhcchhhhhhhhccCCHH---HHHhHHHHHHHHHHHH
Confidence            44456 88889999999999888888  999999999999999999999999777743321   1223444555555555


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhhccccccccccccccCCchHHHHh
Q 022656           85 EKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN--DKVLMMAQEKKMALCEICGSFLVANDAAERTQS  162 (294)
Q Consensus        85 ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~er~~l~~~~~~--~~~~~~~~~qkm~VCeVCGA~Ls~~D~d~Rl~d  162 (294)
                      +.|+.|..+++.|...-.|+.|+..+.+++.|+++++++..++ .  ++|+++..+|||+||+|||||||.+|||+||||
T Consensus       128 ~sIg~lg~e~dalakrk~V~~a~~~f~el~rl~~~rkei~~~v-~sm~en~gq~thqklqvC~iCgayLsrlDtdrrlad  206 (258)
T COG5200         128 ESIGELGMEGDALAKRKLVERACSAFNELERLREERKEIKEAV-YSMVENNGQGTHQKLQVCGICGAYLSRLDTDRRLAD  206 (258)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcchhhhhhhhhhhhhhhHHHhcchhhHHHH
Confidence            5555555555555555559999999999999999999999887 4  567888899999999999999999999999999


Q ss_pred             hhcccccccHHHHHHHHHHHHHH
Q 022656          163 HISGKQHIGYGMVRDFITEYKEA  185 (294)
Q Consensus       163 H~~GK~HlGy~kIRe~l~eL~~~  185 (294)
                      ||.||+|+||++||..|..|.+.
T Consensus       207 Hf~GklHlGy~~~R~dl~~llk~  229 (258)
T COG5200         207 HFNGKLHLGYLLVRSDLADLLKK  229 (258)
T ss_pred             HhccchhhhHHHHHHHHHHHHHH
Confidence            99999999999999999998775

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=95.68  E-value=0.16  Score=48.72  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 022656           34 FEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKV  113 (294)
Q Consensus        34 YE~e~l~~L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~~~~~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~v  113 (294)
                      ++..++--. .|+..|.+-|.-+..+++..-+.....  ..+..+......++|..|.++|+.|+.+-+--+.++.+.++
T Consensus        74 k~~~~~~E~-d~~~~l~~~v~d~~rri~~~kerL~e~--~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veea  150 (319)
T KOG0796|consen   74 KERDYGYEW-DALEILERFVADVDRRIEKAKERLAET--VEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEA  150 (319)
T ss_pred             HhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHH
Confidence            344444333 388888999999988876543212111  11233334444778999999999999998888889999999


Q ss_pred             HHHHHHHHHHHH-hhhhh----hhhhhhhhhccccccccccc
Q 022656          114 EILNVEKTTLTQ-QSQND----KVLMMAQEKKMALCEICGSF  150 (294)
Q Consensus       114 e~Lk~er~~l~~-~~~~~----~~~~~~~~qkm~VCeVCGA~  150 (294)
                      .++-.+.+.|.. +....    ..+++...-+-+.=.||...
T Consensus       151 q~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVC  192 (319)
T KOG0796|consen  151 QKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVC  192 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhh
Confidence            999988888875 22011    11222223345566777643

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=93.61  E-value=0.047  Score=53.72  Aligned_cols=10  Identities=20%  Similarity=0.521  Sum_probs=4.9

Q ss_pred             cccccHHHHH
Q 022656          167 KQHIGYGMVR  176 (294)
Q Consensus       167 K~HlGy~kIR  176 (294)
                      -||.-|+-|.
T Consensus       215 ~qhsr~ai~k  224 (479)
T KOG4676|consen  215 RQHSRRAIIK  224 (479)
T ss_pred             hhhhhhhhcC
Confidence            4555554443

>KOG2888 consensus Putative RNA binding protein [General function prediction only]

Probab=93.56  E-value=0.044  Score=52.97  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=21.9

Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022656           98 GEAGKVDEAEALMRKVEILNVEKTTLTQQS  127 (294)
Q Consensus        98 GeeG~VdeA~~l~~~ve~Lk~er~~l~~~~  127 (294)
                      |.-|=|.-|.-|+=++=.||--+.+|---+
T Consensus       120 gaggivSTAyCLLYklftlklTrKQ~~gll  149 (453)
T KOG2888|consen  120 GAGGIVSTAYCLLYKLFTLKLTRKQLIGLL  149 (453)
T ss_pred             CcCcchhhHHHHHHHHHHHHhHHHHHHHHh
Confidence            455667888888888888887777765433

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=91.77  E-value=1.9  Score=39.52  Aligned_cols=126  Identities=14%  Similarity=0.126  Sum_probs=77.0

Q ss_pred             ChhhHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 022656           30 YVPKFEAELA----QFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDE  105 (294)
Q Consensus        30 ~~~~YE~e~l----~~L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~~~~~~e~i~~l~ekI~~ll~eaE~LGeeG~Vde  105 (294)
                      |...||+.-.    .|--.++..+.+-+.....++.-..   .....+++...+|.++++.|+-+-..|+.||.+|+--.
T Consensus        65 ~K~~YeR~~~~~~~~yEweyl~~L~r~V~~cn~~I~~a~---~~~~~t~ee~~kI~e~~e~~~~~d~sIg~lg~e~dala  141 (258)
T COG5200          65 YKAEYERNGRERAEEYEWEYLRLLVRIVLSCNDGIRAAG---LEDRTTPEEFGKIKEKEELFNRVDESIGELGMEGDALA  141 (258)
T ss_pred             HHHHHhhhhhccchhhhHHHHHHHHHHHHHhcchhhhhh---hhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4445665432    2566788888888888887774221   12345777888999999999999999999999997322


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHhhhhhhhhh--hhhhhccccccccccccccCCchHHHHh
Q 022656          106 A----EALMRKVEILNVEKTTLTQQSQNDKVLM--MAQEKKMALCEICGSFLVANDAAERTQS  162 (294)
Q Consensus       106 A----~~l~~~ve~Lk~er~~l~~~~~~~~~~~--~~~~qkm~VCeVCGA~Ls~~D~d~Rl~d  162 (294)
                      -    ...|...-+|+.-+..+++-+ ..--++  ...+-.-+-=+|||..   +-.-.||+.
T Consensus       142 krk~V~~a~~~f~el~rl~~~rkei~-~~v~sm~en~gq~thqklqvC~iC---gayLsrlDt  200 (258)
T COG5200         142 KRKLVERACSAFNELERLREERKEIK-EAVYSMVENNGQGTHQKLQVCGIC---GAYLSRLDT  200 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCcchhhhhhhhhhhhh---hhHHHhcch
Confidence            2    222233334444444343332 211112  3445566778999954   334566654

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=91.46  E-value=0.69  Score=43.01  Aligned_cols=19  Identities=26%  Similarity=0.588  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 022656           42 CEKLVMDLDRRVRRGRERL   60 (294)
Q Consensus        42 L~~lI~d~dRkI~~~k~RL   60 (294)
                      ++.=|.++..+|.++...|
T Consensus        64 ~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          64 LESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555666777777776666

>PRK02224 chromosome segregation protein; Provisional

Probab=91.07  E-value=4.8  Score=43.28  Aligned_cols=14  Identities=21%  Similarity=0.527  Sum_probs=10.6

Q ss_pred             cccccccccccccc
Q 022656          140 KMALCEICGSFLVA  153 (294)
Q Consensus       140 km~VCeVCGA~Ls~  153 (294)
                      ...+|++||..+..
T Consensus       450 ~~~~Cp~C~r~~~~  463 (880)
T PRK02224        450 EAGKCPECGQPVEG  463 (880)
T ss_pred             hcccCCCCCCcCCC
Confidence            35899999986643

>PHA02562 46 endonuclease subunit; Provisional

Probab=90.56  E-value=5.3  Score=40.46  Aligned_cols=15  Identities=20%  Similarity=0.503  Sum_probs=11.7

Q ss_pred             ccccccccccccccC
Q 022656          140 KMALCEICGSFLVAN  154 (294)
Q Consensus       140 km~VCeVCGA~Ls~~  154 (294)
                      .-.+|++||.-+...
T Consensus       283 ~~~~Cp~C~~~~~~~  297 (562)
T PHA02562        283 KGGVCPTCTQQISEG  297 (562)
T ss_pred             CCCCCCCCCCcCCCc
Confidence            346999999887654

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.15  E-value=0.13  Score=32.71  Aligned_cols=27  Identities=26%  Similarity=0.636  Sum_probs=20.6

Q ss_pred             ccccccccccccCCchHHHHhhhccccccc
Q 022656          142 ALCEICGSFLVANDAAERTQSHISGKQHIG  171 (294)
Q Consensus       142 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlG  171 (294)
                      .-|++|+.++.  ++ .=+..|+.||.|.-
T Consensus         4 ~~C~~C~~~~~--~~-~~~~~H~~gk~H~~   30 (35)
T smart00451        4 FYCKLCNVTFT--DE-ISVEAHLKGKKHKK   30 (35)
T ss_pred             eEccccCCccC--CH-HHHHHHHChHHHHH
Confidence            45999998766  33 34499999999954

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=89.93  E-value=8.6  Score=41.89  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=17.9

Q ss_pred             cccccccccccccCCchHHHHhhhc
Q 022656          141 MALCEICGSFLVANDAAERTQSHIS  165 (294)
Q Consensus       141 m~VCeVCGA~Ls~~D~d~Rl~dH~~  165 (294)
                      ...|+|||.-|.-. ....+.+|+.
T Consensus       457 ~~~CPvCg~~l~~~-~~~~~~~~~~  480 (908)
T COG0419         457 GEKCPVCGQELPEE-HEKELLELYE  480 (908)
T ss_pred             CCCCCCCCCCCCcH-HHHHHHHHHH
Confidence            47899999655433 3677888888

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=89.01  E-value=4.7  Score=36.16  Aligned_cols=82  Identities=22%  Similarity=0.297  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 022656           40 QFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE  119 (294)
Q Consensus        40 ~~L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~~~~~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e  119 (294)
                      ..|..+|.|++.-|..++.-|+...      ........++..+...|..+..+|+.....|+=+-|...+.....+..+
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~------a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~   99 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVM------ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQ   99 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999886432      2344567889999999999999999999999999997777777666666


Q ss_pred             HHHHHHhh
Q 022656          120 KTTLTQQS  127 (294)
Q Consensus       120 r~~l~~~~  127 (294)
                      ...++..+
T Consensus       100 ~~~l~~~~  107 (221)
T PF04012_consen  100 AERLEQQL  107 (221)
T ss_pred             HHHHHHHH
Confidence            66655443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK14143 heat shock protein GrpE; Provisional

Probab=87.62  E-value=2.5  Score=39.23  Aligned_cols=91  Identities=14%  Similarity=0.262  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccccccccC
Q 022656           75 EKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVAN  154 (294)
Q Consensus        75 ~~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~er~~l~~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~  154 (294)
                      ....++..|..+|..|-++++.|-     +.-+.+.+..+.++.-...-..           ...+..+|.++-.||-+.
T Consensus        64 ~~~~~~~~l~~el~~l~~e~~elk-----d~~lR~~AdfeN~RKR~~kE~e-----------~~~~~a~~~~~~~lLpV~  127 (238)
T PRK14143         64 DNAARLAQLEQELESLKQELEELN-----SQYMRIAADFDNFRKRTSREQE-----------DLRLQLKCNTLSEILPVV  127 (238)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
Confidence            345677888888888888888873     4456666666666543221111           124567788889999999


Q ss_pred             CchHHHHhhhcc------cccccHHHHHHHHHH
Q 022656          155 DAAERTQSHISG------KQHIGYGMVRDFITE  181 (294)
Q Consensus       155 D~d~Rl~dH~~G------K~HlGy~kIRe~l~e  181 (294)
                      |+-.|.-.|+..      .++-||..|...|..
T Consensus       128 DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~  160 (238)
T PRK14143        128 DNFERARQQLKPEGEEAQALHRSYQGLYKQLVD  160 (238)
T ss_pred             hHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Confidence            999997777742      367788887554443

>PRK01156 chromosome segregation protein; Provisional

Probab=86.94  E-value=5.8  Score=42.87  Aligned_cols=14  Identities=7%  Similarity=-0.054  Sum_probs=10.1

Q ss_pred             ccccccccccccCC
Q 022656          142 ALCEICGSFLVAND  155 (294)
Q Consensus       142 ~VCeVCGA~Ls~~D  155 (294)
                      .+|+||+..+...+
T Consensus       450 ~~~~~Cp~c~~~~~  463 (895)
T PRK01156        450 NGQSVCPVCGTTLG  463 (895)
T ss_pred             ccCCCCCCCCCcCC
Confidence            37888887777666

>PRK06835 DNA replication protein DnaC; Validated

Probab=86.13  E-value=5.4  Score=38.56  Aligned_cols=67  Identities=15%  Similarity=0.172  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccccccc
Q 022656           79 QLSVLEEKIKNLLEQVETLGEAGK---VDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGS  149 (294)
Q Consensus        79 ~i~~l~ekI~~ll~eaE~LGeeG~---VdeA~~l~~~ve~Lk~er~~l~~~~~~~~~~~~~~~qkm~VCeVCGA  149 (294)
                      +|.+|+.+|..+-.++-.+...|+   -+....+-+++..|..++..|.... .-.   ...-..-..|+.|+=
T Consensus        37 ~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~~~-g~~---~dyl~~~y~Cp~C~d  106 (329)
T PRK06835         37 EIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLVSN-GYP---PDYLEMKYTCPKCKD  106 (329)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHc-CCC---hhhcCCCCCCCCCCC
Confidence            455666666666554444444555   5555677888889988888887654 111   111222357999975

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]

Probab=86.12  E-value=1.7  Score=45.09  Aligned_cols=17  Identities=12%  Similarity=0.329  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 022656          107 EALMRKVEILNVEKTTL  123 (294)
Q Consensus       107 ~~l~~~ve~Lk~er~~l  123 (294)
                      .++|..++.|+.+..+.
T Consensus       257 ~~~~~~~~~~~~qh~~~  273 (757)
T KOG4368|consen  257 LAFQQQIQTLKTQHEEF  273 (757)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            46778888887766553

>PRK14158 heat shock protein GrpE; Provisional

Probab=85.89  E-value=4.8  Score=36.31  Aligned_cols=95  Identities=15%  Similarity=0.074  Sum_probs=61.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccccccccc
Q 022656           72 ISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFL  151 (294)
Q Consensus        72 ~~~~~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~er~~l~~~~~~~~~~~~~~~qkm~VCeVCGA~L  151 (294)
                      ........+..|+++|..+.++++.|-     +.-+.+.++.+.++.-.+   .+.        ...++..+..++-.||
T Consensus        34 ~~~~~~~~~~~le~~l~~le~e~~el~-----d~~lR~~AefeN~RkR~~---kE~--------e~~~~~a~~~~~~~lL   97 (194)
T PRK14158         34 QPVAAADRIKELEEALAAKEAEAAANW-----DKYLRERADLENYRKRVQ---KEK--------EELLKYGNESLILEIL   97 (194)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH---HHH--------HHHHHHHHHHHHHHHH
Confidence            345566778899999999888888883     445556666665543221   111        1234556677788999


Q ss_pred             ccCCchHHHHhhhcc----cccccHHHHHHHHHHH
Q 022656          152 VANDAAERTQSHISG----KQHIGYGMVRDFITEY  182 (294)
Q Consensus       152 s~~D~d~Rl~dH~~G----K~HlGy~kIRe~l~eL  182 (294)
                      .+.|+-.|.-.|...    .++-|+.+|...+...
T Consensus        98 pV~DnLerAl~~~~~~~~~~i~~Gv~mi~k~l~~v  132 (194)
T PRK14158         98 PAVDNMERALDHADEESMSAIIEGIRMTLSMLLST  132 (194)
T ss_pred             hHHhHHHHHHhccCcchHHHHHHHHHHHHHHHHHH
Confidence            999999997667542    3556666666555443

>PRK14144 heat shock protein GrpE; Provisional

Probab=85.22  E-value=4.2  Score=36.84  Aligned_cols=92  Identities=11%  Similarity=0.138  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccccccccCCc
Q 022656           77 SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDA  156 (294)
Q Consensus        77 ~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~er~~l~~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~D~  156 (294)
                      ..++..+.++|..+-++++.|     -+..+.+.++.+.++.-.+.-.+           ...+..+=.++-+||.+.|+
T Consensus        44 ~~~~~~l~~~i~~le~e~~el-----kdk~lR~~AefeN~RKR~~kE~e-----------~~~~~a~~~~~~~LLpV~Dn  107 (199)
T PRK14144         44 HPSYTALEEQLTLAEQKAHEN-----WEKSVRALAELENVRRRMEREVA-----------NAHKYGVEKLISALLPVVDS  107 (199)
T ss_pred             chhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhHHhH
Confidence            355667888888888888877     35667777777777532211111           11233344566889999999


Q ss_pred             hHHHHhhhc----ccccccHHHHHHHHHHHHH
Q 022656          157 AERTQSHIS----GKQHIGYGMVRDFITEYKE  184 (294)
Q Consensus       157 d~Rl~dH~~----GK~HlGy~kIRe~l~eL~~  184 (294)
                      -.|.-.|..    +.++-|+.+|...+...-+
T Consensus       108 LerAl~~~~~~~~~~i~~Gv~mi~k~l~~~L~  139 (199)
T PRK14144        108 LEQALQLADKNSDPSMHEGLELTMKLFLDALQ  139 (199)
T ss_pred             HHHHHHcccccchhHHHHHHHHHHHHHHHHHH
Confidence            999766653    4567788888776665544

>PRK15058 cytochrome b562; Provisional

Probab=84.75  E-value=9.8  Score=32.21  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 022656           78 EQLSVLEEKIKNLLE---QVETLGEAGKVDEAEALMRKVEILNVE  119 (294)
Q Consensus        78 e~i~~l~ekI~~ll~---eaE~LGeeG~VdeA~~l~~~ve~Lk~e  119 (294)
                      .++..+.+-++.|+.   +++.|..+|++++|.....++..|+.+
T Consensus        78 ~e~K~Y~~G~d~Li~qID~a~~la~~GkL~eAK~~a~~l~~lR~e  122 (128)
T PRK15058         78 PEMKDFRHGFDILVGQIDGALKLANEGKVKEAQAAAEQLKTTRNA  122 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            445555555555544   566799999999999999888888754

>PF04032 Rpr2: RNAse P Rpr2/Rpp21/SNM1 subunit domain; InterPro: IPR007175 This family contains a ribonuclease P subunit of human and yeast

Probab=83.36  E-value=3.6  Score=31.16  Aligned_cols=60  Identities=20%  Similarity=0.366  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccccccccCCc
Q 022656           86 KIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDA  156 (294)
Q Consensus        86 kI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~er~~l~~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~D~  156 (294)
                      .|+-|.+-|-.+...+..+-|..++..+..+-.+.           ....++.-+..+|.-||.+|+.+-|
T Consensus         2 Ri~~L~~~a~~~~~~~~~~lsr~y~~~~~~i~~k~-----------~~~l~~~~kr~~Ck~C~~~liPG~~   61 (85)
T PF04032_consen    2 RINFLYQAAHLLLADGSPSLSRHYMKLMRKISKKT-----------RIRLPPEIKRTICKKCGSLLIPGVN   61 (85)
T ss_dssp             HHHHHHHHHH-HHCCC-HHHHHHHHHHHHHHHHHC-----------T---STTCCCTB-TTT--B--CTTT
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-----------CCCCChHHhcccccCCCCEEeCCCc
Confidence            56667777776778888888888887777765321           1123356688999999999998754

Other members of the family include the probable archaeal homologues. This subunit possibly binds the precursor tRNA [].; PDB: 2K3R_A 2KI7_B 2ZAE_B 1X0T_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=83.33  E-value=0.41  Score=29.04  Aligned_cols=25  Identities=20%  Similarity=0.700  Sum_probs=20.0

Q ss_pred             ccccccccccccCCchHHHHhhhccccc
Q 022656          142 ALCEICGSFLVANDAAERTQSHISGKQH  169 (294)
Q Consensus       142 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H  169 (294)
                      .+|++|+..++   ++.=+..|+.||.|
T Consensus         2 ~~C~~C~k~f~---~~~~~~~H~~sk~H   26 (27)
T PF12171_consen    2 FYCDACDKYFS---SENQLKQHMKSKKH   26 (27)
T ss_dssp             CBBTTTTBBBS---SHHHHHCCTTSHHH
T ss_pred             CCcccCCCCcC---CHHHHHHHHccCCC
Confidence            47999996543   45778999999988

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=82.30  E-value=0.43  Score=28.04  Aligned_cols=24  Identities=25%  Similarity=0.699  Sum_probs=18.9

Q ss_pred             cccccccccccCCchHHHHhhhccccc
Q 022656          143 LCEICGSFLVANDAAERTQSHISGKQH  169 (294)
Q Consensus       143 VCeVCGA~Ls~~D~d~Rl~dH~~GK~H  169 (294)
                      .|+||.....   +..=+..|+.||.|
T Consensus         2 ~C~~C~~~f~---s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    2 YCDICNKSFS---SENSLRQHLRSKKH   25 (25)
T ss_dssp             EETTTTEEES---SHHHHHHHHTTHHH
T ss_pred             CCCCCCCCcC---CHHHHHHHHCcCCC
Confidence            6999986543   45679999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-04
2j1d_G	483	DAAM1, disheveled-associated activator of morphoge	4e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	5e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 29/180 (16%), Positives = 67/180 (37%), Gaps = 12/180 (6%)

Query: 33   KFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLE 92
            K EA   +  +KL + L+ ++ + + ++ ++ +            E+++ LE       E
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQLQRKIDEQNK------EYKSLLEKMNNLEITYSTETE 963

Query: 93   QVETLGEAGKV--DEAEALMRKVEILNVEKTTLTQQ-SQNDKVLMMAQEKKMALCEICGS 149
            ++ +  E  ++  +EA+    +V  L  E   L ++  Q        +E           
Sbjct: 964  KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023

Query: 150  FLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEKEVEDRRKQRE 209
             +      +   + +  ++      + D   E  E  EK   EE    E ++ D R + +
Sbjct: 1024 LV---SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 177 DFITEYKEAKEKAREE--ERLAKEKEVEDRRKQR-----EKEYESRKRSGSSDRDRYRDR 229
           D +T+  E+  K REE  +RL +        +Q      +K+ E   +  S   ++ +  
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137

Query: 230 DRDRERERYRERDRE 244
           +R  ++  Y++ D +
Sbjct: 138 NRIADKAFYQQPDAD 152

>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A Length = 483

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 4/107 (3%)

Query: 173 GMVRDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRD 232
           G+   F+    EAK+   E E + K+KE E+RR + E + + ++      R    + +  
Sbjct: 379 GIFDQFLQAVSEAKQ---ENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435

Query: 233 RERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPV 279
            E +      R         S     R     ++     R R  + +
Sbjct: 436 GEFDDLVSALRSGEVFDKDLSKLKRNRKRI-TNQMTDSSRERPITKL 481

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 18/112 (16%), Positives = 40/112 (35%)

Query: 182 YKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRER 241
            +  +E+ R+EE      ++ +  +  +   +                ++ R+R+R R R
Sbjct: 297 ERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRR 356

Query: 242 DRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQ 293
                RE      RD  R  + +  +R  +R R  +    G + +    +  
Sbjct: 357 SHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGN 408

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	95.13
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.35
1x0t_A	120	Ribonuclease P protein component 4; pyrococcus hor	87.16
2k3r_A	123	Ribonuclease P protein component 4; PFU RPP21, RNA	80.87

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=95.13  E-value=0.17  Score=39.58  Aligned_cols=13  Identities=31%  Similarity=0.738  Sum_probs=10.7

Q ss_pred             ccccccccccccc
Q 022656          141 MALCEICGSFLVA  153 (294)
Q Consensus       141 m~VCeVCGA~Ls~  153 (294)
                      -.+|+|||.-|..
T Consensus        47 g~~CPvCgs~l~~   59 (112)
T 1l8d_A           47 KGKCPVCGRELTD   59 (112)
T ss_dssp             SEECTTTCCEECH
T ss_pred             CCCCCCCCCcCCH
Confidence            4689999998763

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.35  E-value=0.82  Score=40.98  Aligned_cols=60  Identities=12%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC---chhhHHHHHHHHHHHHHHHHHHHHHH
Q 022656           39 AQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPI---SAEKSEQLSVLEEKIKNLLEQVETLG   98 (294)
Q Consensus        39 l~~L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~---~~~~~e~i~~l~ekI~~ll~eaE~LG   98 (294)
                      +.-++.-|.++..+|.+.+.+|..........+.   .......+..+++.|..+|.++|.+-
T Consensus        62 ~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~  124 (256)
T 3na7_A           62 VSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKS  124 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677888888888888888542210000000   11123456677777777777776653

>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B

Probab=87.16  E-value=2.6  Score=33.82  Aligned_cols=66  Identities=18%  Similarity=0.261  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccccccccCCch
Q 022656           80 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA  157 (294)
Q Consensus        80 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~er~~l~~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~D~d  157 (294)
                      .....+.|+-|.+-|..| ..++.+-|..++..+..+-..-           ..-.++.-+-.+|.-||+||+.+-|-
T Consensus        16 ~~ia~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~is~k~-----------~irlp~~~KR~~Ck~C~s~LiPG~t~   81 (120)
T 1x0t_A           16 KKIAIERIDTLFTLAERV-ARYSPDLAKRYVELALEIQKKA-----------KVKIPRKWKRRYCKRCHTFLIPGVNA   81 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH-----------TCCCCTTTTTSBCTTTCCBCCBTTTE
T ss_pred             hHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh-----------ccCCCHHHHHHhccCCCCEeECCCce
Confidence            345577899999999888 6788888887777765553221           11233566788999999999988653

>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B

Probab=80.87  E-value=2.6  Score=34.00  Aligned_cols=64  Identities=19%  Similarity=0.279  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccccccccccCCch
Q 022656           82 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA  157 (294)
Q Consensus        82 ~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~er~~l~~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~~D~d  157 (294)
                      ...+.|+-|.+-|..+ ..++.+-|...+..+..+-..-           ..-.++.-+-.+|.-||+||+.+-|-
T Consensus        13 ia~~Ri~~L~~~A~~~-~~~~p~LSr~Y~~~~~~Is~K~-----------~irlp~~~KR~~Ck~C~s~LIPG~t~   76 (123)
T 2k3r_A           13 IAKERIDILFSLAERV-FPYSPELAKRYVELALLVQQKA-----------KVKIPRKWKRRYCKKCHAFLVPGINA   76 (123)
T ss_dssp             --CHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHHH-----------TCCCSSTTTTSBCTTTCCBCCBTTTE
T ss_pred             HHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh-----------ccCCCHHHHHHhccCCCCEeECCCce
Confidence            4467788888888888 5566777777776665443211           11233556788999999999987553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	94.61
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	91.83
d1lrza1	65	Methicillin resistance protein FemA probable tRNA-	82.46

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=94.61  E-value=0.12  Score=38.85  Aligned_cols=75  Identities=15%  Similarity=0.207  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 022656           42 CEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE  119 (294)
Q Consensus        42 L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~~~~~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e  119 (294)
                      |..++.++..-+..++.-|.......  ++...+...-...++ ++..+|..|+.|.++|++++|+.++.+++.++.+
T Consensus        26 i~~~m~~lr~a~~d~~~~l~~~~~~~--~~~~~~~~~~~~g~d-~L~~~ld~i~~la~~G~l~eAk~~l~~l~~~r~~  100 (106)
T d256ba_          26 VKDALTKMRAAALDAQKATPPKLEDK--SPDSPEMKDFRHGFD-ILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNA  100 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCGGGTTS--CTTSHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhcc--ccccchHhHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34444444444555655554322111  122233222233343 4667778999999999999999999999999865

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=91.83  E-value=0.016  Score=40.93  Aligned_cols=27  Identities=19%  Similarity=0.674  Sum_probs=21.5

Q ss_pred             cccccccccccccCCchHHHHhhhcccccc
Q 022656          141 MALCEICGSFLVANDAAERTQSHISGKQHI  170 (294)
Q Consensus       141 m~VCeVCGA~Ls~~D~d~Rl~dH~~GK~Hl  170 (294)
                      ---|-||||.|+.-  .+|| .||.||.|-
T Consensus        32 d~~CkvC~a~L~se--SQri-aHYeskkHa   58 (72)
T d1zu1a1          32 DTQCKVCSAVLISE--SQKL-AHYQSRKHA   58 (72)
T ss_dssp             SSEETTTTEECCSH--HHHH-HHHHCHHHH
T ss_pred             hhhHHHhHHHHHHH--HHHH-HHHHHHHHH
Confidence            35799999998864  4665 599999994

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Methicillin resistance protein FemA probable tRNA-binding arm
domain: Methicillin resistance protein FemA probable tRNA-binding arm
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.46  E-value=0.77  Score=31.57  Aligned_cols=51  Identities=6%  Similarity=0.096  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 022656           37 ELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQV   94 (294)
Q Consensus        37 e~l~~L~~lI~d~dRkI~~~k~RL~~~~e~~~~~~~~~~~~e~i~~l~ekI~~ll~ea   94 (294)
                      +|+.-|+.=...+...|.++...|++.+       .......++.+|+.++......|
T Consensus         3 eYl~~L~~~~~~L~~~i~k~~~~leknP-------~skK~~nk~~el~~Q~~s~~~ki   53 (65)
T d1lrza1           3 EYIKELNEERDILNKDLNKALKDIEKRP-------ENKKAHNKRDNLQQQLDANEQKI   53 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHHHHHHHHH
Confidence            5777888888899999999999998654       23344455555555555444433