Citrus Sinensis ID: 022661

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----

MGERLTPGSYFQYPPSGVHASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREESPSMSPSMSPSMSPFNNAGMKRAKTGR

cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccEEEEEEEEcccccccccccEEEEEEcccccHHHHHHHHHccEEEEEcccccccccHHHHccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc

cccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHccccccccccccccccccccEEEEEEEEEEcccccccEcEEEHEccccccHHHHHHHHcccEEEEEEcccccccHHHHHHcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc

mgerltpgsyfqyppsgvhasphrssslpldRERYLAELLAERQklgpfvqvlPLCSRLLSQEIRritgynpsfvdherfehdspfrslgqpngrpmdleglSAMQteenghlqrmapfqtppsmgwqgipgipttpvVKRVIrldvpvdkypnqfnfvgrilgprgnsLKRVEAMTECRVFirgrgsvkdsikeeklkdkpgyehlneplhvlveaefpediINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGtlreespsmspsmspsmspfnnagmkraktgr

mgerltpgsyfqyppsgvhasphrssslPLDRERYLAELLAERqklgpfvqVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDvpvdkypnqfnfvgrilgprgnsLKRVEAMTecrvfirgrgsvkdsikeeklkdkpgyehlNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLReespsmspsmspsmspfnnagmkraktgr

*********************************RYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPSFVD*************************************************GWQGIPGIPTTPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRG****************YEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHY*********************************************

***********************************LAELLAERQKLGPFVQVLPLCSRLLSQE*************************************************************************PVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRG**********************NEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRE**************************************

MGERLTPGSYFQYPP**************LDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTL*************SMSPFNNA*********

******************************DRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNP**V********SPFRS*****GRPMDLEGLSAMQTEE*GHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEE*LKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTL******************************

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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		294	2.2.26 [Sep-21-2011]
Q8GWR3		298	KH domain-containing prot	yes	no	0.965	0.953	0.710	1e-115
Q75GR5		281	KH domain-containing prot	no	no	0.884	0.925	0.589	2e-77
Q8GYR4		283	KH domain-containing prot	no	no	0.911	0.946	0.533	8e-74
Q0WLR1		308	KH domain-containing prot	no	no	0.863	0.824	0.548	7e-73
Q9ZVI3		286	KH domain-containing prot	no	no	0.887	0.912	0.546	2e-72
Q9FKT4		315	KH domain-containing prot	no	no	0.935	0.873	0.530	8e-72
Q32NN2		341	Protein quaking-A OS=Xeno	N/A	no	0.479	0.413	0.468	3e-29
Q6IRN2		342	Protein quaking-B OS=Xeno	N/A	no	0.479	0.412	0.468	3e-29
Q5W9D5		341	Protein quaking OS=Sus sc	yes	no	0.479	0.413	0.468	4e-29
Q9QYS9		341	Protein quaking OS=Mus mu	yes	no	0.479	0.413	0.468	4e-29

>sp\|Q8GWR3\|QKIL5_ARATH KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1	Back alignment and function desciption

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/294 (71%), Positives = 243/294 (82%), Gaps = 10/294 (3%)

Query: 1   MGERLTPGSYFQYPPSGVHASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLL 60
           M ER++PGS+FQYP SG  ASP+RS   P DRERYL ELL ERQKLGPF+QV+P C RLL
Sbjct: 11  MEERISPGSFFQYPLSGFRASPNRSPCPPSDRERYLTELLQERQKLGPFLQVMPNCCRLL 70

Query: 61  SQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQ 120
           + EIRR++    SF D +R+EH SPFRSLGQP    +DLEG S MQ EEN HLQR +PF+
Sbjct: 71  NHEIRRVS----SFPDLDRYEHGSPFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFR 126

Query: 121 TPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECR 180
            P  +GW G+PG+P  P+VK+VIRLDVPVDKYP+ +NFVGRILGPRGNSLKRVE  T CR
Sbjct: 127 GPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPS-YNFVGRILGPRGNSLKRVELATHCR 185

Query: 181 VFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLK 240
           VFIRGRGSVKD++KEEKLK KPGYEHL EPLHVL+EAE PEDIINSRL+HAV  LE+LLK
Sbjct: 186 VFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLK 245

Query: 241 PVDESLDHYKKQQLRELAMLNGTLREE--SPSMSPSMSPSMSPFNNAGMKRAKT 292
           P+DES+DHYK++QL+ELA LNGTLREE  SPS+SP +SPSMSPFN+   KRAKT
Sbjct: 246 PMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAKT 296

Arabidopsis thaliana (taxid: 3702)

>sp\|Q75GR5\|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica GN=SPIN1 PE=1 SV=1	Back alignment and function description

>sp\|Q8GYR4\|QKIL4_ARATH KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1	Back alignment and function description

>sp\|Q0WLR1\|QKIL1_ARATH KH domain-containing protein At4g26480 OS=Arabidopsis thaliana GN=At4g26480 PE=2 SV=1	Back alignment and function description

>sp\|Q9ZVI3\|QKIL3_ARATH KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1	Back alignment and function description

>sp\|Q9FKT4\|QKIL2_ARATH KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1	Back alignment and function description

>sp\|Q32NN2\|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2	Back alignment and function description

>sp\|Q6IRN2\|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1	Back alignment and function description

>sp\|Q5W9D5\|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1	Back alignment and function description

>sp\|Q9QYS9\|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		294
255570966		295	nucleic acid binding protein, putative [	0.993	0.989	0.827	1e-129
224120082		294	predicted protein [Populus trichocarpa]	0.993	0.993	0.834	1e-129
224129440		294	predicted protein [Populus trichocarpa]	0.993	0.993	0.831	1e-128
225465191		295	PREDICTED: KH domain-containing protein	0.993	0.989	0.838	1e-124
449431864		289	PREDICTED: KH domain-containing protein	0.979	0.996	0.766	1e-119
297849268		298	hypothetical protein ARALYDRAFT_471067 [	0.972	0.959	0.709	1e-115
22329449		298	RNA-binding KH domain-containing protein	0.965	0.953	0.710	1e-113
16930473		298	At1g09660/F21M12_5 [Arabidopsis thaliana	0.965	0.953	0.707	1e-113
115441499		290	Os01g0886300 [Oryza sativa Japonica Grou	0.965	0.979	0.703	1e-108
242090563		292	hypothetical protein SORBIDRAFT_09g02064	0.965	0.972	0.682	1e-108

>gi\|255570966\|ref\|XP_002526434.1\| nucleic acid binding protein, putative [Ricinus communis] gi\|223534214\|gb\|EEF35929.1\| nucleic acid binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/296 (82%), Positives = 270/296 (91%), Gaps = 4/296 (1%)

Query: 1   MGERLTPGSYFQYPPSGVH-ASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRL 59
           MGER+TPGS+FQYPPSG H ASPHR SSL  DRERYLAELLAERQKL PF+QVLPLCSRL
Sbjct: 2   MGERITPGSFFQYPPSGAHQASPHRPSSLSSDRERYLAELLAERQKLVPFIQVLPLCSRL 61

Query: 60  LSQEIRRITGYNPSFVDHERFEHDSPFRSLGQ-PNGRPMDLEGLSAMQTEENGHLQRMAP 118
           L+QEIRR++G+   FVDHER+EH+SP+RSLGQ  NGRPMDLE    M TEENGHLQRMA 
Sbjct: 62  LNQEIRRVSGFTQGFVDHERYEHESPYRSLGQQTNGRPMDLEAWPRMPTEENGHLQRMAS 121

Query: 119 FQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTE 178
           FQ   SMGW G+PGIPTTPV+K+VIRLDVPVD YP+ +NFVGRILGPRGNSLKRVEAMTE
Sbjct: 122 FQAA-SMGWPGVPGIPTTPVIKKVIRLDVPVDDYPS-YNFVGRILGPRGNSLKRVEAMTE 179

Query: 179 CRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENL 238
           CRV+IRG+GSVKDS+KEEKLKDKPGYEHLNEPLHVLVEAEFPEDI+++R++HAV IL++L
Sbjct: 180 CRVYIRGKGSVKDSVKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIVDARVEHAVTILQSL 239

Query: 239 LKPVDESLDHYKKQQLRELAMLNGTLREESPSMSPSMSPSMSPFNNAGMKRAKTGR 294
           LKPVDESLDHYKKQQLRELAMLNGTLREESPSMSPSMSPSMSPFN AGMKRAKT R
Sbjct: 240 LKPVDESLDHYKKQQLRELAMLNGTLREESPSMSPSMSPSMSPFNTAGMKRAKTVR 295

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224120082\|ref\|XP_002331132.1\| predicted protein [Populus trichocarpa] gi\|118487494\|gb\|ABK95574.1\| unknown [Populus trichocarpa] gi\|222872860\|gb\|EEF09991.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224129440\|ref\|XP_002328717.1\| predicted protein [Populus trichocarpa] gi\|222839015\|gb\|EEE77366.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225465191\|ref\|XP_002263798.1\| PREDICTED: KH domain-containing protein At1g09660 [Vitis vinifera] gi\|297739511\|emb\|CBI29693.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449431864\|ref\|XP_004133720.1\| PREDICTED: KH domain-containing protein At1g09660-like [Cucumis sativus] gi\|449478123\|ref\|XP_004155228.1\| PREDICTED: KH domain-containing protein At1g09660-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297849268\|ref\|XP_002892515.1\| hypothetical protein ARALYDRAFT_471067 [Arabidopsis lyrata subsp. lyrata] gi\|297338357\|gb\|EFH68774.1\| hypothetical protein ARALYDRAFT_471067 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|22329449|ref|NP_172437.2| RNA-binding KH domain-containing protein [Arabidopsis thaliana] gi|75244377|sp|Q8GWR3.1|QKIL5_ARATH RecName: Full=KH domain-containing protein At1g09660; AltName: Full=Quaking-like protein 5 gi|26452384|dbj|BAC43277.1| putative elongation factor [Arabidopsis thaliana] gi|51968882|dbj|BAD43133.1| putative elongation factor [Arabidopsis thaliana] gi|51969734|dbj|BAD43559.1| putative elongation factor [Arabidopsis thaliana] gi|51970676|dbj|BAD44030.1| putative elongation factor [Arabidopsis thaliana] gi|51971727|dbj|BAD44528.1| putative elongation factor [Arabidopsis thaliana] gi|51971995|dbj|BAD44662.1| putative elongation factor [Arabidopsis thaliana] gi|332190355|gb|AEE28476.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|16930473\|gb\|AAL31922.1\|AF419590_1 At1g09660/F21M12_5 [Arabidopsis thaliana] gi\|19310523\|gb\|AAL84995.1\| At1g09660/F21M12_5 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi|115441499|ref|NP_001045029.1| Os01g0886300 [Oryza sativa Japonica Group] gi|56784311|dbj|BAD82237.1| QUAKING isoform 5-like [Oryza sativa Japonica Group] gi|56785233|dbj|BAD82121.1| QUAKING isoform 5-like [Oryza sativa Japonica Group] gi|113534560|dbj|BAF06943.1| Os01g0886300 [Oryza sativa Japonica Group] gi|125528639|gb|EAY76753.1| hypothetical protein OsI_04709 [Oryza sativa Indica Group] gi|125572899|gb|EAZ14414.1| hypothetical protein OsJ_04338 [Oryza sativa Japonica Group] gi|215694363|dbj|BAG89356.1| unnamed protein product [Oryza sativa Japonica Group]

Back alignment and taxonomy information

>gi\|242090563\|ref\|XP_002441114.1\| hypothetical protein SORBIDRAFT_09g020640 [Sorghum bicolor] gi\|241946399\|gb\|EES19544.1\| hypothetical protein SORBIDRAFT_09g020640 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		294
TAIR\|locus:2024326		298	AT1G09660 "AT1G09660" [Arabido	0.965	0.953	0.673	1e-100
UNIPROTKB\|Q75GR5		281	SPIN1 "KH domain-containing pr	0.887	0.928	0.580	1.4e-73
TAIR\|locus:2077818		283	AT3G08620 "AT3G08620" [Arabido	0.921	0.957	0.532	2.1e-68
TAIR\|locus:2064097		286	AT2G38610 "AT2G38610" [Arabido	0.931	0.958	0.520	7.4e-66
TAIR\|locus:2161845		315	AT5G56140 "AT5G56140" [Arabido	0.945	0.882	0.505	1.5e-65
FB\|FBgn0264491		405	how "held out wings" [Drosophi	0.448	0.325	0.458	1.6e-32
UNIPROTKB\|G5EFF1		445	asd-2 "Protein ASD-2, isoform	0.401	0.265	0.478	1.3e-29
UNIPROTKB\|E1BP48		348	KHDRBS2 "Uncharacterized prote	0.411	0.347	0.453	1.8e-29
WB\|WBGene00001595		463	gld-1 [Caenorhabditis elegans	0.557	0.354	0.380	2.5e-29
UNIPROTKB\|E2QWN2		349	KHDRBS2 "Uncharacterized prote	0.411	0.346	0.453	2.9e-29

TAIR\|locus:2024326 AT1G09660 "AT1G09660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 198/294 (67%), Positives = 230/294 (78%)

Query:     1 MGERLTPGSYFQYPPSGVHASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLL 60
             M ER++PGS+FQYP SG  ASP+RS   P DRERYL ELL ERQKLGPF+QV+P C RLL
Sbjct:    11 MEERISPGSFFQYPLSGFRASPNRSPCPPSDRERYLTELLQERQKLGPFLQVMPNCCRLL 70

Query:    61 SQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQ 120
             + EIRR++    SF D +R+EH SPFRSLGQP    +DLEG S MQ EEN HLQR +PF+
Sbjct:    71 NHEIRRVS----SFPDLDRYEHGSPFRSLGQPTNGKLDLEGWSMMQAEENCHLQRASPFR 126

Query:   121 TPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECR 180
              P  +GW G+PG+P  P+VK+VIRLDVPVDKYP+ +NFVGRILGPRGNSLKRVE  T CR
Sbjct:   127 GPSPVGWIGMPGLPNPPIVKKVIRLDVPVDKYPS-YNFVGRILGPRGNSLKRVELATHCR 185

Query:   181 VFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLK 240
             VFIRGRGSVKD++KEEKLK KPGYEHL EPLHVL+EAE PEDIINSRL+HAV  LE+LLK
Sbjct:   186 VFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLK 245

Query:   241 PVDESLDHYKKQQLRELAMLNGTLREEXXXXXXX--XXXXXXXFNNAGMKRAKT 292
             P+DES+DHYK++QL+ELA LNGTLREE                FN+   KRAKT
Sbjct:   246 PMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAKT 296

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|Q75GR5 SPIN1 "KH domain-containing protein SPIN1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2077818 AT3G08620 "AT3G08620" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2064097 AT2G38610 "AT2G38610" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2161845 AT5G56140 "AT5G56140" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

FB\|FBgn0264491 how "held out wings" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|G5EFF1 asd-2 "Protein ASD-2, isoform c" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BP48 KHDRBS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

WB\|WBGene00001595 gld-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QWN2 KHDRBS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWR3	QKIL5_ARATH	No assigned EC number	0.7108	0.9659	0.9530	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		294
cd02395		120	cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho	6e-49
COG5176		269	COG5176, MSL5, Splicing factor (branch point bindi	2e-18
smart00322		68	smart00322, KH, K homology RNA-binding domain	8e-05
cd00105		64	cd00105, KH-I, K homology RNA-binding domain, type	3e-04
pfam00013		59	pfam00013, KH_1, KH domain	0.004

>gnl\|CDD\|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH)	Back alignment and domain information

 Score =  158 bits (401), Expect = 6e-49
 Identities = 66/123 (53%), Positives = 85/123 (69%), Gaps = 6/123 (4%)

Query: 144 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPG 203
           ++ +PV +YP  +NFVG ILGPRGN+LK++E  T  ++ IRG+GS+KD  KEE+L   P 
Sbjct: 3   KVYIPVKQYPK-YNFVGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKKEEEL-RGPK 60

Query: 204 YEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESL-DHYKKQQLRELAMLNG 262
           Y HLNEPLHVL+ AE P +     L  AV  +E LLKP  E   D  K++QLRELA+LNG
Sbjct: 61  YAHLNEPLHVLITAETPPEE---ALAKAVEAIEELLKPAIEGGNDELKREQLRELALLNG 117

Query: 263 TLR 265
           T R
Sbjct: 118 TYR 120

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120

>gnl\|CDD\|227503 COG5176, MSL5, Splicing factor (branch point binding protein) [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|197652 smart00322, KH, K homology RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|238053 cd00105, KH-I, K homology RNA-binding domain, type I	Back alignment and domain information

>gnl\|CDD\|215657 pfam00013, KH_1, KH domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		294
KOG1588		259	consensus RNA-binding protein Sam68 and related KH	100.0
cd02395		120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	100.0
KOG0119		554	consensus Splicing factor 1/branch point binding p	100.0
COG5176		269	MSL5 Splicing factor (branch point binding protein	99.97
cd02393		61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	98.41
cd00105		64	KH-I K homology RNA-binding domain, type I. KH bin	98.33
PF00013		60	KH_1: KH domain syndrome, contains KH motifs.; Int	98.3
smart00322		69	KH K homology RNA-binding domain.	98.16
PF13014		43	KH_3: KH domain	98.12
cd02394		62	vigilin_like_KH K homology RNA-binding domain_vigi	98.02
cd02396		65	PCBP_like_KH K homology RNA-binding domain, PCBP_l	97.92
KOG1960		531	consensus Predicted RNA-binding protein, contains	97.85
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	97.65
PRK13763		180	putative RNA-processing protein; Provisional	97.58
COG1094		194	Predicted RNA-binding protein (contains KH domains	97.18
PRK13763		180	putative RNA-processing protein; Provisional	97.08
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	96.83
TIGR02696		719	pppGpp_PNP guanosine pentaphosphate synthetase I/p	96.82
TIGR03591		684	polynuc_phos polyribonucleotide nucleotidyltransfe	96.27
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	96.17
PLN00207		891	polyribonucleotide nucleotidyltransferase; Provisi	95.9
KOG2874		356	consensus rRNA processing protein [Translation, ri	95.83
KOG1676		600	consensus K-homology type RNA binding proteins [RN	95.81
KOG1676		600	consensus K-homology type RNA binding proteins [RN	95.65
PRK04163		235	exosome complex RNA-binding protein Rrp4; Provisio	94.75
PRK11824		693	polynucleotide phosphorylase/polyadenylase; Provis	94.4
KOG2814		345	consensus Transcription coactivator complex, P50 c	94.37
KOG2191		402	consensus RNA-binding protein NOVA1/PASILLA and re	92.82
KOG2191		402	consensus RNA-binding protein NOVA1/PASILLA and re	92.72
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	92.6
KOG2190		485	consensus PolyC-binding proteins alphaCP-1 and rel	90.77
COG1185		692	Pnp Polyribonucleotide nucleotidyltransferase (pol	88.86
PRK00106		535	hypothetical protein; Provisional	88.85
KOG1960		531	consensus Predicted RNA-binding protein, contains	88.82
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	87.63
PRK12704		520	phosphodiesterase; Provisional	86.86
cd02134		61	NusA_KH NusA_K homology RNA-binding domain (KH). N	85.85
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	85.52
KOG2190		485	consensus PolyC-binding proteins alphaCP-1 and rel	84.49

>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=9.6e-65  Score=467.40  Aligned_cols=213  Identities=49%  Similarity=0.741  Sum_probs=183.7

Q ss_pred             chHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHhCCCCCCCCCcccCCCCCCCCCCCCCCCCCccccccchhhh
Q 022661           30 LDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEE  109 (294)
Q Consensus        30 ~~~~~YL~ELl~E~~~L~~~~~~f~h~~rLL~~EI~RV~~~~~~~~~~~~~~~~sp~~s~~~~n~~~~~~~~~~~l~~E~  109 (294)
                      ....+||.||++|+++|++|+. |+||.|||++||.||+.......                            ...+++
T Consensus        28 ~~~~~yl~el~~e~~~l~~~~~-~~~~~rLL~~Ei~rv~~~~~~~~----------------------------~~~~~~   78 (259)
T KOG1588|consen   28 EKASKYLSELLAERKSLSPFFP-FPHAERLLDEEIERVQTSGRQHG----------------------------SKEPEE   78 (259)
T ss_pred             hHHHHHHHHHHhhHHhcCcccc-hHHHHHHHHHHHHHHHhhhhhcc----------------------------CCCchh
Confidence            3457999999999999999998 99999999999999998622010                            000111


Q ss_pred             hcccccCCCCCCCCCCCCCCCCCCCCCCceeEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCC
Q 022661          110 NGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSV  189 (294)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~vk~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~  189 (294)
                      ..                  ....++++.||+++||+|||++||+ ||||||||||||||+||||++|||||+||||||+
T Consensus        79 ~~------------------~~~~~~~~~vk~~~Kv~vPv~~yP~-fNFVGRILGPrGnSlkrLe~eTgCki~IrGrgSm  139 (259)
T KOG1588|consen   79 LP------------------YADVYSGKPVKLTEKVLVPVKEYPK-FNFVGRILGPRGNSLKRLEEETGCKIMIRGRGSM  139 (259)
T ss_pred             cc------------------cccCccCCceeEEEEEEeccCCCCC-CccccccccCCcchHHHHHHHHCCeEEEecCCcc
Confidence            10                  0024577899999999999999999 9999999999999999999999999999999999


Q ss_pred             CCchhhhhccCCCCCCCCCCCcEEEEEecCchhHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHcCccC-CCC
Q 022661          190 KDSIKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLR-EES  268 (294)
Q Consensus       190 kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~LL~p~~e~~delK~~QL~ELA~lNGt~r-~~~  268 (294)
                      ||..||++||++|+||||++||||+|++++++++|++||++|+++|++||+|.+|+.|  |++||||||++||||. +.+
T Consensus       140 rD~~KEE~lR~~p~yeHL~epLHVlIe~~~p~~ea~~rl~~AleeI~klL~P~~e~~d--k~~QL~ELa~lngt~~~~~~  217 (259)
T KOG1588|consen  140 RDKAKEEELRGDPGYEHLNEPLHVLIETEAPPAEAYARLAYALEEIKKLLVPDHEDED--KREQLRELAILNGTYLRSES  217 (259)
T ss_pred             cchHHHHHhhcCcchHHhCCCcEEEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCch--HHHHHHHHhhcCCccccccc
Confidence            9999999999999999999999999999999999999999999999999999998877  9999999999999955 444


Q ss_pred             CCCCCCCCCCCCCCCcccccccccC
Q 022661          269 PSMSPSMSPSMSPFNNAGMKRAKTG  293 (294)
Q Consensus       269 ~~~~~~~~~~~spf~~~~~~~~~~~  293 (294)
                      ..++ .-.|+++||++.|+||+|++
T Consensus       218 ~~~~-g~~~~~~~~~~~~~~r~~~~  241 (259)
T KOG1588|consen  218 RKPS-GGNGRGVPGNSAGGKRGKTG  241 (259)
T ss_pred             cccC-CCCCcCCCCCCCCcccccCC
Confidence            4411 11148999999999999985

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)	Back alignment and domain information

>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]	Back alignment and domain information

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)	Back alignment and domain information

>cd00105 KH-I K homology RNA-binding domain, type I	Back alignment and domain information

>PF00013 KH_1: KH domain syndrome, contains KH motifs	Back alignment and domain information

>smart00322 KH K homology RNA-binding domain	Back alignment and domain information

>PF13014 KH_3: KH domain	Back alignment and domain information

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like	Back alignment and domain information

>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	Back alignment and domain information

>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional	Back alignment and domain information

>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional	Back alignment and domain information

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional	Back alignment and domain information

>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]	Back alignment and domain information

>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH)	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		294
2bl5_A		140	Solution Structure Of The Kh-Qua2 Region Of The Xen		7e-28
1k1g_A		131	Structural Basis For Recognition Of The Intron Bran		5e-17

>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus Star-Gsg Quaking Protein Length = 140

Back alignment and structure

Iteration: 1

Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 62/123 (50%), Positives = 86/123 (69%), Gaps = 1/123 (0%) Query: 144 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPG 203 +L VPV +YP+ FNFVGRILGPRG + K++EA T C++ +RG+GS++D KEE+ + KP Sbjct: 5 KLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPN 63 Query: 204 YEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGT 263 +EHLNE LHVL+ E ++ +L AV ++ LL P E D KK +L ELA+LNGT Sbjct: 64 WEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGT 123 Query: 264 LRE 266 R+ Sbjct: 124 YRD 126

PyMOL of 2bl5

>pdb|1K1G|A Chain A, Structural Basis For Recognition Of The Intron Branch Site Rna By Splicing Factor 1 Length = 131

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		294
2bl5_A		140	MGC83862 protein, quaking protein; STAR proteins,	3e-52
1k1g_A		131	SF1-BO isoform; splicing, branch point sequence, p	3e-47
2yqr_A		119	KIAA0907 protein; structure genomics, KH domain, s	5e-28

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131	Back alignment and structure

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		294
2bl5_A		140	MGC83862 protein, quaking protein; STAR proteins,	100.0
1k1g_A		131	SF1-BO isoform; splicing, branch point sequence, p	100.0
2yqr_A		119	KIAA0907 protein; structure genomics, KH domain, s	99.95
3k6t_A		60	Female germline-specific tumor suppressor GLD-1; Q	99.06
4dnn_A		56	Protein quaking, MQKI, QKI; helix-turn-helix, hydr	99.04
2xa6_A		41	KH domain-containing\,RNA-binding\,signal transduc	98.96
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	98.79
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	98.69
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	98.61
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	98.5
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	98.49
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	98.45
1we8_A		104	Tudor and KH domain containing protein; structural	98.44
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	98.43
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	98.41
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	98.39
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	98.38
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	98.35
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	98.35
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	98.33
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	98.33
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	98.32
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	98.29
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	98.17
2ctm_A		95	Vigilin; K homology type I domain, RNA-binding, ce	98.13
2ctl_A		97	Vigilin; K homology type I domain, RNA-binding, ce	98.11
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	97.95
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	97.94
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	97.78
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	97.72
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	97.71
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	97.71
2ctj_A		95	Vigilin; K homology type I domain, RNA-binding, ce	97.6
1tua_A		191	Hypothetical protein APE0754; structural genomics,	97.59
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	97.58
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	97.55
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	97.44
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	97.36
2cpq_A		91	FragIle X mental retardation syndrome related prot	97.27
3u1k_A		630	Polyribonucleotide nucleotidyltransferase 1, MITO;	97.07
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	95.71
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	95.67
4aid_A		726	Polyribonucleotide nucleotidyltransferase; transfe	95.17
3n89_A		376	Defective in GERM LINE development protein 3, ISO;	94.72
2ctf_A		102	Vigilin; K homology type I domain, RNA-binding, ce	93.61
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	90.82
3v69_A		140	Protein filia; RNA-binding, embryogenesis, KH doma	88.55
3cdi_A		723	Polynucleotide phosphorylase; mRNA turnover, RNAse	88.2
1tua_A		191	Hypothetical protein APE0754; structural genomics,	85.88
3n89_A		376	Defective in GERM LINE development protein 3, ISO;	80.83

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1	Back alignment and structure

Probab=100.00  E-value=2.5e-50  Score=343.04  Aligned_cols=129  Identities=48%  Similarity=0.785  Sum_probs=126.2

Q ss_pred             EEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecCc
Q 022661          141 RVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEFP  220 (294)
Q Consensus       141 ~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~~  220 (294)
                      +++|||||+++||+ |||||+||||||+|+|+||++|||||.||||||+||.++|+.++|+|+|+|++|||||+|+++++
T Consensus         2 ~~~Ki~IP~~~~P~-~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~   80 (140)
T 2bl5_A            2 LQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA   80 (140)
T ss_dssp             EEEEEECCTTTCSS-SCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred             ceeEEEcCcccCCC-CCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc
Confidence            57899999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHcCccCCCCCC
Q 022661          221 EDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREESPS  270 (294)
Q Consensus       221 ~~~~~~rl~~A~e~Ie~LL~p~~e~~delK~~QL~ELA~lNGt~r~~~~~  270 (294)
                      +++|+++|++|+++|++||.|++|++|++|++||+|||+||||||+++++
T Consensus        81 ~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~  130 (140)
T 2bl5_A           81 QNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK  130 (140)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred             hhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCccc
Confidence            99999999999999999999999999999999999999999999999877

PyMOL of 2bl5

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A	Back alignment and structure

>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}	Back alignment and structure

>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}	Back alignment and structure

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A	Back alignment and structure

>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A	Back alignment and structure

>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}	Back alignment and structure

>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A	Back alignment and structure

>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}	Back alignment and structure

>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A	Back alignment and structure

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		294
d2bl5a1		134	d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric	9e-55
d1k1ga_		122	d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s	1e-43
d1dtja_		74	d.51.1.1 (A:) Neuro-oncological ventral antigen 2,	9e-05
d2je6i3		69	d.51.1.1 (I:153-221) Exosome complex RNA-binding p	0.002
d2z0sa2		87	d.51.1.1 (A:148-234) Exosome complex RNA-binding p	0.002

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  171 bits (436), Expect = 9e-55
 Identities = 62/126 (49%), Positives = 87/126 (69%), Gaps = 1/126 (0%)

Query: 144 RLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPG 203
           +L VPV +YP+ FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP 
Sbjct: 5   KLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPN 63

Query: 204 YEHLNEPLHVLVEAEFPEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGT 263
           +EHLNE LHVL+  E  ++    +L  AV  ++ LL P  E  D  KK +L ELA+LNGT
Sbjct: 64  WEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGT 123

Query: 264 LREESP 269
            R+ + 
Sbjct: 124 YRDANL 129

PyMOL of d2bl5a1

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 87	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		294
d2bl5a1		134	Quaking protein A (Xqua) {African clawed frog (Xen	100.0
d1k1ga_		122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	100.0
d1dtja_		74	Neuro-oncological ventral antigen 2, nova-2, KH3 {	98.63
d1j4wa2		71	Far upstream binding element, FBP {Human (Homo sap	98.49
d1x4ma1		81	Far upstream binding element, FBP {Mouse (Mus musc	98.47
d1we8a_		104	Tudor and KH domain containing protein, Tdrkh {Mou	98.42
d1x4na1		79	Far upstream binding element, FBP {Mouse (Mus musc	98.42
d1zzka1		75	HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	98.42
d1j4wa1		74	Far upstream binding element, FBP {Human (Homo sap	98.39
d2ctka1		91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	98.37
d2cpqa1		78	Fragile X mental retardation syndrome related prot	98.34
d1tuaa2		104	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	98.3
d1wvna1		70	Poly(RC)-binding protein 1 {Human (Homo sapiens) [	98.29
d2ctma1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1tuaa1		84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	98.19
d2axya1		71	Poly(RC)-binding protein 2 {Human (Homo sapiens) [	98.13
d2ctea1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	98.09
d2ba0a3		84	Exosome complex RNA-binding protein 1, ECR1 {Archa	98.08
d1viga_		71	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	98.07
d2je6i3		69	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	98.03
d2z0sa2		87	Exosome complex RNA-binding protein 1, ECR1 {Aerop	97.92
d2ctla1		84	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2ctja1		82	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1e3ha4		54	Polynucleotide phosphorylase/guanosine pentaphosph	97.56
d2ctfa1		90	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	97.37

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=8.7e-52  Score=347.78  Aligned_cols=130  Identities=48%  Similarity=0.783  Sum_probs=126.7

Q ss_pred             eEEEEEecCCCCCCCCCceeeEEeCCCCchHHHHHHhhCCeEEEecccCCCCchhhhhccCCCCCCCCCCCcEEEEEecC
Q 022661          140 KRVIRLDVPVDKYPNQFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEAEF  219 (294)
Q Consensus       140 k~~~KI~IPv~~yP~~~NFvGrILGPrG~TlK~LE~eTGckI~IRGrGS~kd~~ke~~lrg~p~~ehl~epLHVlI~a~~  219 (294)
                      |+++|||||+++||+ |||||+||||||+|+|+||++|||||+||||||+||.++++.++++++|+|++|||||+|+|++
T Consensus         1 kl~eKv~IP~~~~P~-~NfvG~IiGPrG~t~K~le~eTg~kI~IrGrGS~k~~~~~~~~~~~~~~~~~~epLHv~I~a~~   79 (134)
T d2bl5a1           1 QLQEKLYVPVKEYPD-FNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVED   79 (134)
T ss_dssp             CEEEEEECCTTTCSS-SCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECS
T ss_pred             CcceEEeCCCCCCCC-CCeeEEEECCCCchHHHHHHHHCCEEEEEecCCCcCccccccccCCCCCcCCCCCCEEEEEecC
Confidence            578999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHcCccCCCCCC
Q 022661          220 PEDIINSRLDHAVAILENLLKPVDESLDHYKKQQLRELAMLNGTLREESPS  270 (294)
Q Consensus       220 ~~~~~~~rl~~A~e~Ie~LL~p~~e~~delK~~QL~ELA~lNGt~r~~~~~  270 (294)
                      ++..|+++|++|+++|++||.|+++++|++|++||+|||+||||||+++..
T Consensus        80 ~~~~a~~kl~~A~~~I~~lL~p~~e~~de~k~~QL~eLa~lNGt~r~~~~~  130 (134)
T d2bl5a1          80 AQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLK  130 (134)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGS
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhcCccccccCC
Confidence            999999999999999999999999999999999999999999999999866

PyMOL of d2bl5a1

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}	Back information, alignment and structure

>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure