Citrus Sinensis ID: 022666

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----

MHNPQNESRRRKRIISFLQNHSSFSPKIKMMPSRTLTPSALKNSILLFSFLLIIYLFFYYPSLHAPPRLLSSHVVTANPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTSSATSFQSCEC

ccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHcccccEEEEEEccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccccEEcHHHHHHHHccccccccEEEEEcccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccc

ccccccccHccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccEEccHHHHHHHHHccccccEEEEcccccHHHHEEcccccccccHHHHEcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccc

mhnpqnesRRRKRIISFLqnhssfspkikmmpsrtltpsaLKNSILLFSFLLIIYLFFyypslhapprllsshvvtanpltrRHLLFSIAssssswprrrSYVRlwyspnstrALTFLdraadsssagdpslprivisadtskfpftfpkgLRSAVRVARVVKEAVdltdekagvrwfvfgdddtvFFVDNLVKTLskydddrwfyvgsnsegyeqnakhsfgmafggggfAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVElgvgltpepgfhqntssatsfqscec

mhnpqnesrrrKRIISFlqnhssfspkikmmpSRTLTPSALKNSILLFSFLLIIYLFFYYPSLHAPPRLLSSHVVTANPLTRRHLLFSiassssswprrrSYVRLWYSPNSTRALTFLDRAAdsssagdpslprIVISadtskfpftfpkglrsaVRVARVVKEavdltdekagvrwfvfgdddtvFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPepgfhqntssatsfqscec

MHNPQNESRRRKRIISFLQNHSSFSPKIKMMPSRTLTPSALKNsillfsflliiylffyypslHAPPRLLSSHVVTANPLTRRHLLFsiassssswprrrsyvrLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLrsavrvarvvkeavDLTDEKAGVRWfvfgdddtvffvdNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSfgmafggggfaISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTSSATSFQSCEC

***************************************ALKNSILLFSFLLIIYLFFYYPSLHAPPRLLSSHVVTANPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFL***************RIVISADTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLT********************

******************QNHSSFSPKIKMMPSRTLTPSALKNSILLFSFLLIIYLFFYYPSL********************HLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTSSATSFQSC**

**********RKRIISFLQNHSSFSPKIKMMPSRTLTPSALKNSILLFSFLLIIYLFFYYPSLHAPPRLLSSHVVTANPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDR*********PSLPRIVISADTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQ*************

**************ISFLQNHSSFSPKIKMMPSRTLTPSALKNSILLFSFLLIIYLFFYYPSLHA*************PLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQN**SATSF*SC*C

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		294
297800668		488	hypothetical protein ARALYDRAFT_493365 [	0.918	0.553	0.584	3e-83
449453676		487	PREDICTED: uncharacterized protein LOC10	0.812	0.490	0.629	2e-82
255549339		308	transferase, transferring glycosyl group	0.819	0.782	0.663	3e-79
356544838		492	PREDICTED: uncharacterized protein LOC10	0.687	0.410	0.696	3e-79
30683185		488	uncharacterized protein [Arabidopsis tha	0.918	0.553	0.591	2e-77
2244882		520	hypothetical protein [Arabidopsis thalia	0.918	0.519	0.591	2e-77
147842358		1587	hypothetical protein VITISV_043112 [Viti	0.755	0.139	0.635	2e-73
359485673		455	PREDICTED: uncharacterized protein LOC10	0.755	0.487	0.635	9e-73
224132986		479	predicted protein [Populus trichocarpa]	0.673	0.413	0.669	7e-69
255549331		476	transferase, transferring glycosyl group	0.829	0.512	0.539	2e-65

>gi\|297800668\|ref\|XP_002868218.1\| hypothetical protein ARALYDRAFT_493365 [Arabidopsis lyrata subsp. lyrata] gi\|297314054\|gb\|EFH44477.1\| hypothetical protein ARALYDRAFT_493365 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 163/279 (58%), Positives = 204/279 (73%), Gaps = 9/279 (3%)

Query: 6   NESRRRKRIISFLQNHSSFSPKIKMMPSRT--LTPSALKNSILLFSFLLIIYLFFYYPSL 63
           N++RR++R    L    S SP++ + P+++  LT S ++   LL +F  IIY+ F Y + 
Sbjct: 2   NQTRRKRRPDPSLSRLDSLSPEM-LFPAKSPSLTSSRIRYIFLLLTFCFIIYIIFSYGTT 60

Query: 64  HAPPRLLS-SHVVTANPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAA 122
               ++ S +  ++     RRHLLFSIA+S  SW RR SYVRLWYSP STRA+ FLDR  
Sbjct: 61  FRREQISSIARSLSVFSTRRRHLLFSIAASHDSWLRRSSYVRLWYSPESTRAVVFLDRGG 120

Query: 123 DSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGD 182
             S   D +LP +++S D S+FP+ FP GLRSA+RVARVVKE VDL D+   VRWFVFGD
Sbjct: 121 LES---DLTLPPVIVSKDVSRFPYNFPGGLRSAIRVARVVKETVDLGDKD--VRWFVFGD 175

Query: 183 DDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLA 242
           DDTVFFVDNLV  LSKYD  +W+YVGSNSE Y+QN ++SF MAFGGGGFAIS SLA+VLA
Sbjct: 176 DDTVFFVDNLVTVLSKYDHRKWYYVGSNSEFYDQNVRYSFDMAFGGGGFAISASLAKVLA 235

Query: 243 GALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQ 281
             LDSCLMRY+H+YGSD+R+FSC+ ELGV LT EPGFHQ
Sbjct: 236 KVLDSCLMRYSHMYGSDSRIFSCVAELGVTLTHEPGFHQ 274

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449453676\|ref\|XP_004144582.1\| PREDICTED: uncharacterized protein LOC101222721 [Cucumis sativus] gi\|449493205\|ref\|XP_004159221.1\| PREDICTED: uncharacterized protein LOC101223399 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255549339\|ref\|XP_002515723.1\| transferase, transferring glycosyl groups, putative [Ricinus communis] gi\|223545160\|gb\|EEF46670.1\| transferase, transferring glycosyl groups, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356544838\|ref\|XP_003540854.1\| PREDICTED: uncharacterized protein LOC100813277 [Glycine max]	Back alignment and taxonomy information

>gi\|30683185\|ref\|NP_193259.2\| uncharacterized protein [Arabidopsis thaliana] gi\|332658175\|gb\|AEE83575.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|2244882\|emb\|CAB10303.1\| hypothetical protein [Arabidopsis thaliana] gi\|7268271\|emb\|CAB78566.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|147842358\|emb\|CAN76207.1\| hypothetical protein VITISV_043112 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359485673\|ref\|XP_002274405.2\| PREDICTED: uncharacterized protein LOC100246569 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224132986\|ref\|XP_002327928.1\| predicted protein [Populus trichocarpa] gi\|222837337\|gb\|EEE75716.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255549331\|ref\|XP_002515719.1\| transferase, transferring glycosyl groups, putative [Ricinus communis] gi\|223545156\|gb\|EEF46666.1\| transferase, transferring glycosyl groups, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		294
TAIR\|locus:2129845		488	AT4G15240 [Arabidopsis thalian	0.918	0.553	0.394	1.6e-45
TAIR\|locus:2207170		461	AT1G05280 "AT1G05280" [Arabido	0.693	0.442	0.352	2.1e-29
TAIR\|locus:2025416		478	AT1G01570 [Arabidopsis thalian	0.676	0.416	0.344	6.1e-28
TAIR\|locus:2026514		541	AT1G07850 [Arabidopsis thalian	0.670	0.364	0.358	2.9e-26
TAIR\|locus:2128283		507	AT4G11350 [Arabidopsis thalian	0.673	0.390	0.346	6e-25
TAIR\|locus:2196673		548	AT1G33250 [Arabidopsis thalian	0.676	0.363	0.336	1.7e-24
TAIR\|locus:2177896		524	AT5G41460 [Arabidopsis thalian	0.670	0.375	0.33	8.7e-24
TAIR\|locus:2040711		532	AT2G37730 [Arabidopsis thalian	0.659	0.364	0.34	9.2e-24
TAIR\|locus:2126076		785	AT4G00300 [Arabidopsis thalian	0.676	0.253	0.308	5.1e-23
TAIR\|locus:2117949		526	AT4G23490 [Arabidopsis thalian	0.666	0.372	0.318	6.7e-23

TAIR\|locus:2129845 AT4G15240 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 110/279 (39%), Positives = 145/279 (51%)

Query:     6 NESRRRKRIISFLQNHSSFSPKIKMMPSRT--LTPSALKNXXXXXXXXXXXXXXXXXXXX 63
             N++RR++R  S L    S SP++ + P+++  LT S ++N                    
Sbjct:     2 NQTRRKRRPDSSLSRLDSLSPEM-LFPAKSPSLTSSRIRNIFLLLIFCFIIYIIFSYGTN 60

Query:    64 HAPPRLLS-SHVVTANPLTRRHLLFXXXXXXXXXXXXXXXXXLWYSPNSTRALTFLDRAA 122
                 ++ S +  ++     RRHLLF                 LWYSP STRA+ FLDR  
Sbjct:    61 FRREQISSIARSLSVFSTRRRHLLFSIAASHDSWLRRSSYVRLWYSPESTRAVVFLDRGG 120

Query:   123 DSSSAGDPSLPRIVISADTSKFPFTFPKGLXXXXXXXXXXXXXXDLTDEKAGVRWXXXXX 182
               S   D +LP +++S D S+FP+ FP GL              D  D+   VRW     
Sbjct:   121 LES---DLTLPPVIVSKDVSRFPYNFPGGLRSAIRVARVVKETVDRGDKD--VRWFVFGD 175

Query:   183 XXXXXXXXNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSXXXXXXXXXXXISHSLARVLA 242
                     NLV  LSKYD  +WFYVGSNSE Y+QN ++S           IS SLA+VLA
Sbjct:   176 DDTVFFVDNLVTVLSKYDHRKWFYVGSNSEFYDQNVRYSFDMAFGGGGFAISASLAKVLA 235

Query:   243 GALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQ 281
               LDSCLMRY+H+YGSD+R+FSC+ ELGV LT EPGFHQ
Sbjct:   236 KVLDSCLMRYSHMYGSDSRIFSCVAELGVTLTHEPGFHQ 274

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR\|locus:2207170 AT1G05280 "AT1G05280" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025416 AT1G01570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026514 AT1G07850 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128283 AT4G11350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2196673 AT1G33250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2177896 AT5G41460 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040711 AT2G37730 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2126076 AT4G00300 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2117949 AT4G23490 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		294
PLN03153		537	PLN03153, PLN03153, hypothetical protein; Provisio	8e-64
pfam04646		256	pfam04646, DUF604, Protein of unknown function, DU	1e-33
pfam02434		248	pfam02434, Fringe, Fringe-like	7e-11

>gnl\|CDD\|215605 PLN03153, PLN03153, hypothetical protein; Provisional	Back alignment and domain information

 Score =  209 bits (533), Expect = 8e-64
 Identities = 103/202 (50%), Positives = 128/202 (63%), Gaps = 3/202 (1%)

Query: 80  LTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISA 139
           L+  H++F IA SS  W RR+  VRLW+ PN  R   +L+    S   GD SLP I++S 
Sbjct: 119 LSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQV-SPEEGDDSLPPIMVSE 177

Query: 140 DTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKY 199
           DTS+F +T P G  S +R++R+V E+  L      VRWFV GDDDT+F  DNLV  LSKY
Sbjct: 178 DTSRFRYTNPTGHPSGLRISRIVLESFRLG--LPDVRWFVLGDDDTIFNADNLVAVLSKY 235

Query: 200 DDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDSCLMRYAHLYGSD 259
           D     YVG  SE +  N+  S  MAFGGGG AIS+ LA  L+  LD CL RY  LYGSD
Sbjct: 236 DPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSD 295

Query: 260 ARVFSCLVELGVGLTPEPGFHQ 281
            R+ +C+ ELGV L+ EPGFHQ
Sbjct: 296 DRLHACITELGVPLSREPGFHQ 317

Length = 537

>gnl\|CDD\|218189 pfam04646, DUF604, Protein of unknown function, DUF604	Back alignment and domain information

>gnl\|CDD\|190308 pfam02434, Fringe, Fringe-like	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		294
PLN03153		537	hypothetical protein; Provisional	100.0
PF02434		252	Fringe: Fringe-like; InterPro: IPR003378 The Notch	100.0
KOG2246		364	consensus Galactosyltransferases [Carbohydrate tra	100.0
PF04646		255	DUF604: Protein of unknown function, DUF604; Inter	99.85
KOG3708		681	consensus Uncharacterized conserved protein [Funct	99.69
PLN03193		408	beta-1,3-galactosyltransferase; Provisional	99.6
KOG2287		349	consensus Galactosyltransferases [Carbohydrate tra	99.44
PF01762		195	Galactosyl_T: Galactosyltransferase; InterPro: IPR	99.37
PLN03133		636	beta-1,3-galactosyltransferase; Provisional	99.37
KOG2288		274	consensus Galactosyltransferases [Carbohydrate tra	98.96
PTZ00210		382	UDP-GlcNAc-dependent glycosyltransferase; Provisio	98.88
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	95.65
PRK11204		420	N-glycosyltransferase; Provisional	95.53
PF13506		175	Glyco_transf_21: Glycosyl transferase family 21	95.45
cd04186		166	GT_2_like_c Subfamily of Glycosyltransferase Famil	95.13
cd02520		196	Glucosylceramide_synthase Glucosylceramide synthas	94.58
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	94.45
KOG2246		364	consensus Galactosyltransferases [Carbohydrate tra	94.37
cd06434		235	GT2_HAS Hyaluronan synthases catalyze polymerizati	94.21
PRK14583		444	hmsR N-glycosyltransferase; Provisional	93.74
cd02526		237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	92.88
PF13641		228	Glyco_tranf_2_3: Glycosyltransferase like family 2	92.19
cd04185		202	GT_2_like_b Subfamily of Glycosyltransferase Famil	91.5
PLN03181		453	glycosyltransferase; Provisional	91.32
COG1215		439	Glycosyltransferases, probably involved in cell wa	91.11
cd06421		234	CESA_CelA_like CESA_CelA_like are involved in the	91.05
PF13632		193	Glyco_trans_2_3: Glycosyl transferase family group	90.45
PF01755		200	Glyco_transf_25: Glycosyltransferase family 25 (LP	89.93
cd06437		232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	89.29
TIGR01556		281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	88.9
cd06427		241	CESA_like_2 CESA_like_2 is a member of the cellulo	88.84
cd06532		128	Glyco_transf_25 Glycosyltransferase family 25 [lip	88.25
cd04188		211	DPG_synthase DPG_synthase is involved in protein N	87.93
cd04192		229	GT_2_like_e Subfamily of Glycosyltransferase Famil	87.86
cd06438		183	EpsO_like EpsO protein participates in the methano	86.98
cd04195		201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	86.65
PTZ00260		333	dolichyl-phosphate beta-glucosyltransferase; Provi	86.39
PF13704		97	Glyco_tranf_2_4: Glycosyl transferase family 2	85.53
cd06436		191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	85.12
cd06442		224	DPM1_like DPM1_like represents putative enzymes si	84.74
cd04196		214	GT_2_like_d Subfamily of Glycosyltransferase Famil	84.47
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	84.28
cd06420		182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	84.08
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	83.96
cd04184		202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	83.01
PRK05454		691	glucosyltransferase MdoH; Provisional	83.01
PLN02726		243	dolichyl-phosphate beta-D-mannosyltransferase	82.14
cd06435		236	CESA_NdvC_like NdvC_like proteins in this family a	80.96

>PLN03153 hypothetical protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.7e-51  Score=400.41  Aligned_cols=214  Identities=48%  Similarity=0.814  Sum_probs=200.3

Q ss_pred             CCCCCCcEEEEEecCCCchhhHHHHHHHHhcCCCCeEEEEecCCCCCCCCCCCCCCceeecCCCCCccccCCCCchhHHH
Q 022666           78 NPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVISADTSKFPFTFPKGLRSAVR  157 (294)
Q Consensus        78 ~~~~~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~~~~~vfsD~~~~~~~~~~~~lp~v~i~~d~~~~~y~~~~g~~~a~r  157 (294)
                      .+++.+||+|||+|+.+.|++|.++++.||+++.++++|+.|+...+ ...+..+|++.|+.|+++|.|+++.|+.++++
T Consensus       117 ~~t~~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~-~~~~~~~P~i~is~d~s~f~y~~~~Gh~sa~r  195 (537)
T PLN03153        117 AELSLNHIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSP-EEGDDSLPPIMVSEDTSRFRYTNPTGHPSGLR  195 (537)
T ss_pred             CCCccccEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCC-CCCcCCCCCEEeCCCcccccccCCCCcHHHHH
Confidence            56999999999999999999999999999999999999999987542 23467899999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcccccccccccccCccccccHHH
Q 022666          158 VARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQNAKHSFGMAFGGGGFAISHSL  237 (294)
Q Consensus       158 ~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~~~~~g~~~a~GGaG~vlSr~l  237 (294)
                      +++++.++++.+.  +++||||++||||||+++||+++|++||+++++|||..+|...++..++|.|++|||||+||++|
T Consensus       196 I~rmv~et~~~~~--pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn~~f~~~fA~GGAG~~LSrPL  273 (537)
T PLN03153        196 ISRIVLESFRLGL--PDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSANSYFSHNMAFGGGGIAISYPL  273 (537)
T ss_pred             HHHHHHHHHHhhC--CCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccccccccccccCCceEEEcHHH
Confidence            9999999987765  99999999999999999999999999999999999999998888778888899999999999999


Q ss_pred             HHHHHhhhhHhhhhcccCCcchHHHHHHHHHhCCceecCCCCcccCCCCCCCccccC
Q 022666          238 ARVLAGALDSCLMRYAHLYGSDARVFSCLVELGVGLTPEPGFHQNTSSATSFQSCEC  294 (294)
Q Consensus       238 l~~L~~~~d~C~~~~~~~~~~D~~lg~Cl~~lGV~lt~~p~fhq~d~~gd~~G~~e~  294 (294)
                      +++|.+..+.|..+|...+++|.+||+||+++||++|++++|||+|++||++||||+
T Consensus       274 ae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les  330 (537)
T PLN03153        274 AEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSS  330 (537)
T ss_pred             HHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhc
Confidence            999999999999888878899999999999999999999999999999999999996

>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []	Back alignment and domain information

>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins	Back alignment and domain information

>KOG3708 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03193 beta-1,3-galactosyltransferase; Provisional	Back alignment and domain information

>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>PLN03133 beta-1,3-galactosyltransferase; Provisional	Back alignment and domain information

>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]	Back alignment and domain information

>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>PF13506 Glyco_transf_21: Glycosyl transferase family 21	Back alignment and domain information

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]	Back alignment and domain information

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan	Back alignment and domain information

>PRK14583 hmsR N-glycosyltransferase; Provisional	Back alignment and domain information

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase	Back alignment and domain information

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A	Back alignment and domain information

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>PLN03181 glycosyltransferase; Provisional	Back alignment and domain information

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose	Back alignment and domain information

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2	Back alignment and domain information

>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex	Back alignment and domain information

>TIGR01556 rhamnosyltran L-rhamnosyltransferase	Back alignment and domain information

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily	Back alignment and domain information

>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis	Back alignment and domain information

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation	Back alignment and domain information

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis	Back alignment and domain information

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis	Back alignment and domain information

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional	Back alignment and domain information

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2	Back alignment and domain information

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine	Back alignment and domain information

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1	Back alignment and domain information

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	Back alignment and domain information

>PRK05454 glucosyltransferase MdoH; Provisional	Back alignment and domain information

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase	Back alignment and domain information

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		294
2j0a_A		280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	2e-27

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A* Length = 280	Back alignment and structure

 Score =  106 bits (265), Expect = 2e-27
 Identities = 43/219 (19%), Positives = 70/219 (31%), Gaps = 27/219 (12%)

Query: 79  PLTRRHLLFSIASSSSSWPRRRSYV-RLWYSPNSTRALTFLDRAADSSSAGDPSLPRIVI 137
            L    +  ++ ++ +    R   +   W S    +   F D   +        L   ++
Sbjct: 9   ELQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQ---ERLGPHLV 65

Query: 138 SADTSKFPFTFPKGLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLS 197
               S          + A      +           G+RWF   DDD       L++ L 
Sbjct: 66  VTQCSAEHSHPALSCKMAAEFDAFLVS---------GLRWFCHVDDDNYVNPKALLQLLK 116

Query: 198 KYDDDRWFYVGSNS----------EGYEQNAKHSFGMAFGGGGFAISHSLARVLAGALDS 247
            +  DR  YVG  S          +  ++     F  A GG GF I+  LA  +      
Sbjct: 117 TFPQDRDVYVGKPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASG 176

Query: 248 C--LMRYAHLYGSDARVFSCLVE--LGVGLTPEPGFHQN 282
              +   A +   D      ++E  LG  L P P FH +
Sbjct: 177 SHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSH 215

PyMOL of 2j0a

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		294
2j0a_A		280	Beta-1,3-N-acetylglucosaminyltransferase manic FR;	100.0
4hg6_A		802	Cellulose synthase subunit A; membrane translocati	91.89
1qg8_A		255	Protein (spore coat polysaccharide biosynthesis P	83.33
2ffu_A		501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	82.37
2c0n_A		203	A197; thermophil protein, thermophilic virus, STIV	80.66

>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*	Back alignment and structure

Probab=100.00  E-value=4.3e-34  Score=263.96  Aligned_cols=193  Identities=21%  Similarity=0.284  Sum_probs=135.8

Q ss_pred             CCCCCCCCcEEEEEecCCCchhhHHHHHHHHhcCCCC-eEEEEecCCCCCCCCCCCCCCce----eecCCCCCccccCCC
Q 022666           76 TANPLTRRHLLFSIASSSSSWPRRRSYVRLWYSPNST-RALTFLDRAADSSSAGDPSLPRI----VISADTSKFPFTFPK  150 (294)
Q Consensus        76 ~~~~~~~~~Ilf~I~Ts~~~~~~R~~~ik~ww~~~~~-~~~vfsD~~~~~~~~~~~~lp~v----~i~~d~~~~~y~~~~  150 (294)
                      .+.+++.++|+|+|+|+++++.+|++++++||++.+. .++||+|.+++.       +|.+    .+..+.+. .+. ..
T Consensus         6 ~~~~~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~~~fifsd~~d~~-------l~~~~~~~~~~~~~~~-~~~-~~   76 (280)
T 2j0a_A            6 GPLELQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDER-------LQERLGPHLVVTQCSA-EHS-HP   76 (280)
T ss_dssp             ---CCCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGGGEEEEESSCCHH-------HHHHHGGGEEECCC---------
T ss_pred             CCCCCCcccEEEEEECcHHHHHHHHHHHHHHHhccCCCceEEEcCCCccc-------ccccccccceeccccc-ccc-cc
Confidence            3457899999999999999999999999999997654 567799877432       2221    12222211 111 11


Q ss_pred             CchhHHHHHHHHHHHHHhccccCCccEEEEEcCCccccHHHHHHHHccCCCCCCeEEeecCCCCcc----------cccc
Q 022666          151 GLRSAVRVARVVKEAVDLTDEKAGVRWFVFGDDDTVFFVDNLVKTLSKYDDDRWFYVGSNSEGYEQ----------NAKH  220 (294)
Q Consensus       151 g~~~a~r~~~~i~~~~~~~~~~~~~~Wf~~~DDDTyv~~~nL~~~L~~yd~~~p~yiG~~~e~~~~----------~~~~  220 (294)
                      ++  .++....++..   .  .+++|||+++||||||+++||+++|++||+++++|+|..++....          ....
T Consensus        77 ~l--~~K~~~~~~~~---l--~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~~~~~~~~~~~~~  149 (280)
T 2j0a_A           77 AL--SCKMAAEFDAF---L--VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHASELQSKQRTKLV  149 (280)
T ss_dssp             CC--CHHHHHHHHHH---H--HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC------------------
T ss_pred             ch--HHHHHHHHHHH---h--CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccccccCcccccccc
Confidence            11  12222223321   1  278999999999999999999999999999999999998755311          0123


Q ss_pred             cccccccCccccccHHHHHHHHhhhhHhhh--h-cccCCcchHHHHHHHH-HhCCceecCCCCcccCC
Q 022666          221 SFGMAFGGGGFAISHSLARVLAGALDSCLM--R-YAHLYGSDARVFSCLV-ELGVGLTPEPGFHQNTS  284 (294)
Q Consensus       221 g~~~a~GGaG~vlSr~ll~~L~~~~d~C~~--~-~~~~~~~D~~lg~Cl~-~lGV~lt~~p~fhq~d~  284 (294)
                      +|+||+||||||||++++++|.+..+.|.-  . ......+|+.||+|++ ++||+++++++|||+.-
T Consensus       150 ~~~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~  217 (280)
T 2j0a_A          150 RFWFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLE  217 (280)
T ss_dssp             -CCEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSS
T ss_pred             ccCcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCc
Confidence            567899999999999999999987666611  0 0123458999999998 79999999999999764

PyMOL of 2j0a

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}	Back alignment and structure

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*	Back alignment and structure

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*	Back alignment and structure

>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		294
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	85.25

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.25  E-value=0.53  Score=38.21  Aligned_cols=96  Identities=15%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             CCccEEEEEcCCccccHHHHHHHHccC--CCCCCeEEeecC-----CCCc---------ccccccccccccCccccccHH
Q 022666          173 AGVRWFVFGDDDTVFFVDNLVKTLSKY--DDDRWFYVGSNS-----EGYE---------QNAKHSFGMAFGGGGFAISHS  236 (294)
Q Consensus       173 ~~~~Wf~~~DDDTyv~~~nL~~~L~~y--d~~~p~yiG~~~-----e~~~---------~~~~~g~~~a~GGaG~vlSr~  236 (294)
                      .+.+|++++|+|.++.++.|.+++..+  +++..++.|...     +...         ....+......++++++++++
T Consensus        87 a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (255)
T d1qg8a_          87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVTWNAPCAIDHCSVMHRYS  166 (255)
T ss_dssp             CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEECCCSCBSCCTTTSCGGGEEEETH
T ss_pred             cccccccccccccccccchHHHHHHHHHhCCCCCeEeecceeeeeCCCCcEeeeecccchhhhhhhcccccchhHHHHHH
Confidence            467999999999988876666655443  445555544421     1100         011222344567888999999


Q ss_pred             HHHHHHhhhhHhhhhcc-cCCcchHHHHHHHHH
Q 022666          237 LARVLAGALDSCLMRYA-HLYGSDARVFSCLVE  268 (294)
Q Consensus       237 ll~~L~~~~d~C~~~~~-~~~~~D~~lg~Cl~~  268 (294)
                      +++++........+... ....+|..+...+..
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl~~  199 (255)
T d1qg8a_         167 VLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH  199 (255)
T ss_dssp             HHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT
T ss_pred             HHHHHHHhhCCCccccchhcchhhHHHHHHHHc
Confidence            99998765432221111 122478777665543

PyMOL of d1qg8a_