Citrus Sinensis ID: 022689

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---

MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI

cccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEcccccEEEccccccccccccccEEEEEEccccccccccccccccc

cHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEccEccccccccccccEEEEEEHHcccccccccccccc

MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASlgysssngneksnLDNLVKAVAGVTVisqhdqakpskgtkRREKRAQQEAAREQRIQEEQSNivsdrtvedeklekklgplgltvndikpdghclYRAVEDQLahlsggaspynFQQLRQMVAAYMRdhssdflpfylsenmigeesAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHImiysgsfpdvemgkeysnggsdssgsSIILSYHRhafglgehynsvipi

mlsrhrkeisqlqnkETELkkaaakgskaeqkakkkqVEEEISRLSAKLREKHAKELAslgysssngneKSNLDNLVKAVAGVTVisqhdqakpskgtkrrEKRAQQEAAreqriqeeqsnivsdrtvedeklekklgplgltvndikPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFglgehynsvipi

MLSRHRKEISQLQNKETelkkaaakgskaeqkakkkqveeeISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKrrekraqqeaareqriqeeqSNIVSDRTVEDeklekklgplglTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYsnggsdssgssIILSYHRHAFGLGEHYNSVIPI

***************************************************************************LVKAVAGVTVI***************************************************GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIG*******VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD******************IILSYHRHAFGLGEHYN*****

**SRHR*****************************************************************************************************************************KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG**********SG*SIILSYHRHAFGLGEHYNSVIPI

******************************************SRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVIS****************************QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKE*********GSSIILSYHRHAFGLGEHYNSVIPI

MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGY****************************************************IQ****NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		293	2.2.26 [Sep-21-2011]
Q7ZV00		293	OTU domain-containing pro	yes	no	0.911	0.911	0.386	1e-43
Q5M8L0		294	OTU domain-containing pro	yes	no	0.907	0.904	0.375	3e-43
Q6GM06		294	OTU domain-containing pro	N/A	no	0.914	0.911	0.380	2e-42
Q5ZIP6		302	OTU domain-containing pro	yes	no	0.918	0.890	0.377	2e-42
Q8N6M0		293	OTU domain-containing pro	yes	no	0.897	0.897	0.368	7e-41
Q8K2H2		294	OTU domain-containing pro	yes	no	0.911	0.908	0.367	6e-39
Q6IE21		290	OTU domain-containing pro	no	no	0.904	0.913	0.336	4e-38
Q7L8S5		288	OTU domain-containing pro	no	no	0.887	0.902	0.328	1e-33
Q9UUK3		324	Ubiquitin thioesterase ot	yes	no	0.931	0.842	0.266	8e-24
P38747		307	OTU domain-containing pro	yes	no	0.918	0.876	0.270	6e-22

>sp\|Q7ZV00\|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1	Back alignment and function desciption

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/300 (38%), Positives = 160/300 (53%), Gaps = 33/300 (11%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           +  +HRKE   LQ K   +K A  K  K     ++KQ+ E+I++L A+L +KH  EL   
Sbjct: 11  LAKQHRKEKKDLQAKIQSMKNAVPKNDKK----RRKQLTEDIAKLEAELSQKHENELKLQ 66

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSK------GTKRREKRAQQEAAREQR 114
             SS        ++ +  A+  ++V +  +Q+ PSK        KRR+K+A  E  RE R
Sbjct: 67  NTSS--------VEEVSDALDSMSVANHEEQSDPSKQSRTSKAQKRRDKKAALEKEREMR 118

Query: 115 IQE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN 173
           I E E  N+   R  E  KL +KL    L + +I  DGHC+YRAVE QL    G A    
Sbjct: 119 IAEAEVENLSGSRHQEGLKLREKLVERHLQIKEISSDGHCMYRAVEHQLTE-RGLA--LG 175

Query: 174 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELEL 233
            ++LR   A YMR H+ DF+PF  + N     +A    E FE YC +V  TAAWGG+LEL
Sbjct: 176 LKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTA----EEFEKYCSDVADTAAWGGQLEL 231

Query: 234 RALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 293
           +AL+  L+  I +     P + +G+EY           I L Y RHA+GLGEHYNSV P+
Sbjct: 232 KALSQVLQLPIEVIQADSPCITIGEEYDK-------PKITLIYMRHAYGLGEHYNSVEPL 284

Danio rerio (taxid: 7955)

>sp\|Q5M8L0\|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1	Back alignment and function description

>sp\|Q6GM06\|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1	Back alignment and function description

>sp\|Q5ZIP6\|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2 SV=1	Back alignment and function description

>sp\|Q8N6M0\|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	Back alignment and function description

>sp\|Q8K2H2\|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2 SV=1	Back alignment and function description

>sp\|Q6IE21\|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1	Back alignment and function description

>sp\|Q7L8S5\|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1	Back alignment and function description

>sp\|Q9UUK3\|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=otu2 PE=4 SV=1	Back alignment and function description

>sp\|P38747\|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		293
449520871		325	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.989	0.892	0.764	1e-129
449436806		319	PREDICTED: OTU domain-containing protein	0.989	0.909	0.761	1e-128
357511169		335	OTU domain-containing protein 6B [Medica	1.0	0.874	0.755	1e-127
388521917		326	unknown [Medicago truncatula]	1.0	0.898	0.755	1e-127
255571935		325	OTU domain-containing protein 6B, putati	0.996	0.898	0.778	1e-125
224131236		326	predicted protein [Populus trichocarpa]	0.996	0.895	0.767	1e-124
356505520		324	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.993	0.898	0.767	1e-123
363807892		324	uncharacterized protein LOC100780620 [Gl	0.996	0.901	0.747	1e-122
319428666		357	OTU-like cysteine protease [Phaseolus vu	0.979	0.803	0.753	1e-120
225436773		325	PREDICTED: OTU domain-containing protein	0.989	0.892	0.778	1e-117

>gi\|449520871\|ref\|XP_004167456.1\| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/293 (76%), Positives = 263/293 (89%), Gaps = 3/293 (1%)

Query: 1   MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 60
           MLSRHRKEISQLQNKE ELKKAAA+GSKAEQK K KQVEEEIS+LS KL++K A+ELASL
Sbjct: 36  MLSRHRKEISQLQNKEIELKKAAARGSKAEQKVKXKQVEEEISQLSVKLKKKQAEELASL 95

Query: 61  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 120
           G+S+SNGNEK N+DNLVKA+AGV++ +Q D +KPSK T+R+EKRAQQEA R++RI+EEQS
Sbjct: 96  GFSNSNGNEK-NIDNLVKAIAGVSMAAQSDHSKPSKSTRRKEKRAQQEAERDRRIEEEQS 154

Query: 121 NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQM 180
           NIVSDR +E+E LEKKL PLGLTVN+IKPDGHCLYRAVE+QLA+LSGG+SPYN+QQLR+M
Sbjct: 155 NIVSDRMIENEHLEKKLEPLGLTVNEIKPDGHCLYRAVENQLAYLSGGSSPYNYQQLREM 214

Query: 181 VAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCL 240
           VAAYMRDHS+D++PF+LS+N +   S  S  ERFENYCKEVESTAAWGG+LEL ALTHCL
Sbjct: 215 VAAYMRDHSTDYMPFFLSDNGVEGNSNSSLAERFENYCKEVESTAAWGGQLELGALTHCL 274

Query: 241 RKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 293
           RKHIMI+SGSFPDVEMGKEY + G  +  SSI LSYH+HAFGLGEHYNSV+P+
Sbjct: 275 RKHIMIFSGSFPDVEMGKEYKSEGVIN--SSIRLSYHKHAFGLGEHYNSVVPV 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449436806\|ref\|XP_004136183.1\| PREDICTED: OTU domain-containing protein 6B-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357511169\|ref\|XP_003625873.1\| OTU domain-containing protein 6B [Medicago truncatula] gi\|355500888\|gb\|AES82091.1\| OTU domain-containing protein 6B [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388521917\|gb\|AFK49020.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|255571935\|ref\|XP_002526909.1\| OTU domain-containing protein 6B, putative [Ricinus communis] gi\|223533728\|gb\|EEF35462.1\| OTU domain-containing protein 6B, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224131236\|ref\|XP_002321034.1\| predicted protein [Populus trichocarpa] gi\|222861807\|gb\|EEE99349.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356505520\|ref\|XP_003521538.1\| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Glycine max]	Back alignment and taxonomy information

>gi\|363807892\|ref\|NP_001242191.1\| uncharacterized protein LOC100780620 [Glycine max] gi\|255641250\|gb\|ACU20902.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|319428666\|gb\|ADV56689.1\| OTU-like cysteine protease [Phaseolus vulgaris]	Back alignment and taxonomy information

>gi\|225436773\|ref\|XP_002267732.1\| PREDICTED: OTU domain-containing protein 6B isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		293
TAIR\|locus:2099172		332	AT3G62940 [Arabidopsis thalian	0.976	0.861	0.516	1.2e-74
ZFIN\|ZDB-GENE-040426-974		293	otud6b "OTU domain containing	0.802	0.802	0.350	1.5e-28
MGI\|MGI:1919451		294	Otud6b "OTU domain containing	0.914	0.911	0.286	1.2e-26
DICTYBASE\|DDB_G0279375		340	DDB_G0279375 "OTU domain conta	0.546	0.470	0.355	3e-24
MGI\|MGI:3644685		290	Otud6a "OTU domain containing	0.778	0.786	0.296	6.8e-24
UNIPROTKB\|G4NEZ8		304	MGG_11505 "Uncharacterized pro	0.709	0.684	0.267	2.8e-20
SGD\|S000001005		307	OTU2 "Protein of unknown funct	0.447	0.426	0.324	1e-19
CGD\|CAL0002605		323	orf19.1959 [Candida albicans (	0.535	0.486	0.305	2e-17
POMBASE\|SPAC1952.03		324	otu2 "ubiquitin specific cyste	0.450	0.407	0.294	4.7e-17
ASPGD\|ASPL0000026973		340	AN5638 [Emericella nidulans (t	0.488	0.420	0.303	3.1e-13

TAIR\|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 155/300 (51%), Positives = 193/300 (64%)

Query:     1 MLSRHRKEISQLQNKETXXXXXXXXXXXXXXXXXXXXXXXXISRLSAKLREKHAKELASL 60
             ML+RHR+EI QLQNKET                        IS+LS KL++K  KELAS 
Sbjct:    31 MLARHRQEIKQLQNKETEMKKAAAKGSKAEQKAKKKQVEDDISKLSTKLKDKQLKELASQ 90

Query:    61 GYSSSNGN---------EKSNLDNLVKAVAGVTVISQHDQAKPSKGTKXXXXXXXXXXXX 111
             G+SSS+ N         +K ++D LV+A+AGV+V +Q + +KPSK  K            
Sbjct:    91 GFSSSSSNNIAKDETTEKKGDIDTLVRAIAGVSVTAQQEHSKPSKSVKRREKRAKEEADR 150

Query:   112 XXXXXXXXSNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLAHLSGGASP 171
                     S++ SDR VE+            TV++IKPDGHCLYRAVE+QLA+ SGGASP
Sbjct:   151 EQRIKEEQSHVKSDRMVENAKLEKKLKPLGLTVSEIKPDGHCLYRAVENQLANRSGGASP 210

Query:   172 YNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGEL 231
             Y +Q LR+M A+YMR+H +DFLPF+LSE   G+ ++ S  ERFE YC+EVESTAAWG +L
Sbjct:   211 YTYQNLREMAASYMREHKTDFLPFFLSETE-GDSNSGSAEERFEKYCREVESTAAWGSQL 269

Query:   232 ELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSVI 291
             EL ALTHCLRKHI +YSGSFPDVEMGKEY           ++LSYHRHAFGLGEHYNSV+
Sbjct:   270 ELGALTHCLRKHIKVYSGSFPDVEMGKEYRSGDDSS----LMLSYHRHAFGLGEHYNSVV 325

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

ZFIN\|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0279375 DDB_G0279375 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

MGI\|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NEZ8 MGG_11505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

SGD\|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

CGD\|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

POMBASE\|SPAC1952.03 otu2 "ubiquitin specific cysteine protease, OTU family, Otu2" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000026973 AN5638 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZIP6	OTU6B_CHICK	No assigned EC number	0.3775	0.9180	0.8907	yes	no
Q5M8L0	OTU6B_XENTR	No assigned EC number	0.375	0.9078	0.9047	yes	no
Q8K2H2	OTU6B_MOUSE	No assigned EC number	0.3676	0.9112	0.9081	yes	no
Q8N6M0	OTU6B_HUMAN	No assigned EC number	0.3680	0.8976	0.8976	yes	no
Q7ZV00	OTU6B_DANRE	No assigned EC number	0.3866	0.9112	0.9112	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		293
pfam02338		123	pfam02338, OTU, OTU-like cysteine protease	2e-26
COG5539		306	COG5539, COG5539, Predicted cysteine protease (OTU	1e-12
pfam10275		237	pfam10275, Peptidase_C65, Peptidase C65 Otubain	4e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl\|CDD\|216981 pfam02338, OTU, OTU-like cysteine protease	Back alignment and domain information

 Score =  100 bits (250), Expect = 2e-26
 Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 19/141 (13%)

Query: 148 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESA 207
             DG+CL+ AV DQL             +LR+ V  Y+R++  DF  F            
Sbjct: 1   PGDGNCLFHAVSDQL---GDAGRQELHDELREAVVEYLRENREDFEKFLE---------- 47

Query: 208 QSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG-KEYSNGGSD 266
               E    Y K +    AWGG +E+ AL H LR  I++Y      + +  K Y      
Sbjct: 48  ----EDENEYYKWISKDGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPL 103

Query: 267 SSGSSIILSYHRHAFGLGEHY 287
           +    I LSY       G HY
Sbjct: 104 NKKPVIRLSYLGLE-YTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl\|CDD\|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|220671 pfam10275, Peptidase_C65, Peptidase C65 Otubain	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		293
KOG2606		302	consensus OTU (ovarian tumor)-like cysteine protea	100.0
COG5539		306	Predicted cysteine protease (OTU family) [Posttran	99.98
PF02338		121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.94
KOG3288		307	consensus OTU-like cysteine protease [Signal trans	99.73
PF10275		244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.68
KOG3991		256	consensus Uncharacterized conserved protein [Funct	99.64
KOG2605		371	consensus OTU (ovarian tumor)-like cysteine protea	99.4
COG5539		306	Predicted cysteine protease (OTU family) [Posttran	98.95
PF05415		104	Peptidase_C36: Beet necrotic yellow vein furovirus	89.66

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=7.9e-73  Score=512.11  Aligned_cols=277  Identities=44%  Similarity=0.751  Sum_probs=240.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CCCCCcchhhhh
Q 022689            1 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSN--GNEKSNLDNLVK   78 (293)
Q Consensus         1 l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~~k~v~~e~~~le~el~~rh~~El~~~~~~~~~--~~~~~~~~~~~~   78 (293)
                      ||+|||+|+|+||++||+|||+++||+|    ++||+++.+|++||.+|++||.+||..+......  ...+...++++.
T Consensus        17 iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e~~~~s~l~   92 (302)
T KOG2606|consen   17 ILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKENLIESVLS   92 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCccccchhhhhc
Confidence            5899999999999999999999999996    8999999999999999999999999999753311  112223445555


Q ss_pred             hhcccccccccCCCCCccchhhHHHHHHHHHHHH-HHHHHHH--hcccCCCchHHHHHHhHhccCCCeeeecCCCCCchH
Q 022689           79 AVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQ--SNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLY  155 (293)
Q Consensus        79 ~~~~~~~~~~~~~~~~~k~~~r~~~r~~~~~~~~-~~i~~e~--~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLF  155 (293)
                      .++.++....++.|..||++|||.+++..++.++ ++|.+++  ++.++.+.+|.+.|.+.|...||.+++||+||||||
T Consensus        93 ~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY  172 (302)
T KOG2606|consen   93 PIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDIPADGHCLY  172 (302)
T ss_pred             ccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccCCCCchhhH
Confidence            5666666655555667888888776665555555 8887654  378999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHHhhcCCCcCcHHHHHH
Q 022689          156 RAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRA  235 (293)
Q Consensus       156 rAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~A  235 (293)
                      +||+|||..+++  ...+++.||..+|+||+.|.++|.||+.++.+|+..    ..++|+.||+.|++|+.|||++||.|
T Consensus       173 ~aI~hQL~~~~~--~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~----~~~~f~~Yc~eI~~t~~WGgelEL~A  246 (302)
T KOG2606|consen  173 AAISHQLKLRSG--KLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL----GPEDFDKYCREIRNTAAWGGELELKA  246 (302)
T ss_pred             HHHHHHHHhccC--CCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC----CHHHHHHHHHHhhhhccccchHHHHH
Confidence            999999998875  458999999999999999999999999999887643    26789999999999999999999999


Q ss_pred             HHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 022689          236 LTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  293 (293)
Q Consensus       236 lA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p~  293 (293)
                      ||++|++||.||+.++|+++||++|..      .+||.|+||+|+|+||+|||||.|.
T Consensus       247 lShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  247 LSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             HHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence            999999999999999999999999853      6899999999999999999999884

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae	Back alignment and domain information

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		293
3pfy_A		185	OTU domain-containing protein 5; structural genomi	2e-37
3by4_A		212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-27
3phx_A		185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-26
3phu_A		219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-22
1tff_A		234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	2e-11
2zfy_A		234	Ubiquitin thioesterase OTUB1; otubain, structural	4e-10
4dhi_B		284	Ubiquitin thioesterase otubain-like; ubiquitin E2	1e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185	Back alignment and structure

 Score =  130 bits (328), Expect = 2e-37
 Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 31/209 (14%)

Query: 88  QHDQAKPSKGTKRREKRAQQEAAREQRIQ---EEQSNIVSDRTVEDEKLEKKLGPLGLTV 144
            H     S       + A   +  E        E  +  +    E    +      G  +
Sbjct: 2   HHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFII 61

Query: 145 NDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGE 204
             +K DG CL+RAV DQ+            + +R+    Y+  ++  F  +   +     
Sbjct: 62  KQMKEDGACLFRAVADQVYG-----DQDMHEVVRKHCMDYLMKNADYFSNYVTED----- 111

Query: 205 ESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGG 264
                    F  Y          G  +E++A+     + + +Y  S   +          
Sbjct: 112 ---------FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ-- 160

Query: 265 SDSSGSSIILSYHRHAFGLGEHYNSVIPI 293
             +    I +SYHR+      HYNSV+  
Sbjct: 161 --NEDEPIRVSYHRN-----IHYNSVVNP 182

PyMOL of 3pfy

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212	Back alignment and structure

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185	Back alignment and structure

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219	Back alignment and structure

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234	Back alignment and structure

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234	Back alignment and structure

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		293
3pfy_A		185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A		212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	100.0
3phx_A		185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A		219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A		234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.95
2zfy_A		234	Ubiquitin thioesterase OTUB1; otubain, structural	99.92
4dhi_B		284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.89
4ddg_A		399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.86
3dkb_A		390	Tumor necrosis factor, alpha-induced protein 3; OT	98.78
3zrh_A		454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.66

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*	Back alignment and structure

Probab=100.00  E-value=4.6e-41  Score=292.49  Aligned_cols=145  Identities=23%  Similarity=0.399  Sum_probs=111.3

Q ss_pred             HHhcccCCCchHHHHHHhHhccCCCeeeecCCCCCchHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc
Q 022689          118 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL  197 (293)
Q Consensus       118 e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~qL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~  197 (293)
                      |+...++.+..|..-+..+|..+||.+++||+|||||||||++||++     .+..|..||+.||+||++|+++|.|||.
T Consensus        35 ~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g-----~~~~h~~LR~~vv~yi~~n~d~f~~Fv~  109 (185)
T 3pfy_A           35 EAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYG-----DQDMHEVVRKHCMDYLMKNADYFSNYVT  109 (185)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHS-----CGGGHHHHHHHHHHHHHHTHHHHTTCC-
T ss_pred             HhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44455666899999999999999999999999999999999999998     4678999999999999999999999995


Q ss_pred             CccccchhhhhhhhhhHHHHHHHhhcCCCcCcHHHHHHHHHhhcCcEEEEECCCCceE-e-CCCCCCCCCCCCCCeEEEE
Q 022689          198 SENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVE-M-GKEYSNGGSDSSGSSIILS  275 (293)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~~~~~-~-g~e~~~~~~~~~~~~i~L~  275 (293)
                      +              +|++||.+|+++++|||++||+|||++|+++|.||+.+++++. + |.+.      ...++|+|+
T Consensus       110 ~--------------~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~  169 (185)
T 3pfy_A          110 E--------------DFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVS  169 (185)
T ss_dssp             ------------------------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEE
T ss_pred             c--------------cHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEE
Confidence            3              6999999999999999999999999999999999998875543 4 3322      236899999


Q ss_pred             eccCCCCCCCccccccc
Q 022689          276 YHRHAFGLGEHYNSVIP  292 (293)
Q Consensus       276 Y~~~~y~lGeHYnSl~p  292 (293)
                      ||+     |+|||||++
T Consensus       170 Y~~-----~~HYnSv~~  181 (185)
T 3pfy_A          170 YHR-----NIHYNSVVN  181 (185)
T ss_dssp             EET-----TTEEEEEEC
T ss_pred             ECC-----CCCcccccC
Confidence            998     599999986

PyMOL of 3pfy

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A	Back alignment and structure

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A	Back alignment and structure

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}	Back alignment and structure

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11	Back alignment and structure

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A	Back alignment and structure

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A	Back alignment and structure

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A	Back alignment and structure

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A	Back alignment and structure

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		293
d1tffa_		228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	4e-13

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (158), Expect = 4e-13
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 28/189 (14%)

Query: 106 QQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHC--LYRAVEDQLA 163
            +E  + +    +  N +     E+ K           V  ++ DG    L +   DQ  
Sbjct: 62  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQ-- 119

Query: 164 HLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVES 223
                AS +  Q LR + +A++R+ +  F  F   E  I +               EVE 
Sbjct: 120 ----SASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDF-----------CTHEVEP 164

Query: 224 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGL 283
            A     +++ AL+  L   + +    + D        +   +++  S+ L Y       
Sbjct: 165 MATECDHIQITALSQALSIALQVE---YVDEMDTALNHHVFPEAATPSVYLLYK------ 215

Query: 284 GEHYNSVIP 292
             HYN +  
Sbjct: 216 TSHYNILYA 224

PyMOL of d1tffa_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		293
d1tffa_		228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.9

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-24  Score=191.03  Aligned_cols=97  Identities=23%  Similarity=0.394  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhcCcccccccccCccccchhhhhhhhhhHHHHHHH-hhcCCCcCcHHHHHHHHHhhcCcEEEEECCCCc
Q 022689          175 QQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPD  253 (293)
Q Consensus       175 ~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~AlA~~l~~~I~V~~~~~~~  253 (293)
                      ..||..++.||+.|++.|.||+..+            .++++||.+ |..+++|||++||.|||.+|+++|.|+..+.+.
T Consensus       127 ~~lR~l~s~~i~~~~~~y~~Fi~~~------------~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~  194 (228)
T d1tffa_         127 QFLRLLTSAFIRNRADFFRHFIDEE------------MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD  194 (228)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTT------------SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC---
T ss_pred             HHHHHHHHHHHHHCHHHHHhHhcCC------------ccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCC
Confidence            4589999999999999999999653            368999986 999999999999999999999999999887654


Q ss_pred             eEeCC-CCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 022689          254 VEMGK-EYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  293 (293)
Q Consensus       254 ~~~g~-e~~~~~~~~~~~~i~L~Y~~~~y~lGeHYnSl~p~  293 (293)
                      ..+.. .|.    ....++|+|+|.      +.|||+|+|.
T Consensus       195 ~~~~~~~~~----~~~~~~I~Lly~------pgHYdiLY~~  225 (228)
T d1tffa_         195 TALNHHVFP----EAATPSVYLLYK------TSHYNILYAA  225 (228)
T ss_dssp             ----CCCCC----CCSSCSEEEEEE------TTEEEEEEEC
T ss_pred             CccccccCC----CCCCCEEEEEeC------CCCcccCccC
Confidence            33321 221    234678999997      5799999984

PyMOL of d1tffa_