Citrus Sinensis ID: 022733

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MAVAMVLSYHHVSGYVNPNKSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Secondary Structure (PSIPRED)
ccEEccccccccccccccccccccccEEEcccccccccccccHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccEEcccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEHHHHccccccccccccccEEEEEEcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccccccccHHHHHccccEEEEccccEEEEcccccccHHHHHHHHHHcccccEEEccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MAVAMVLSYHHVsgyvnpnksslSVIRCCngrageraskkkNYYELLGVSVEANGQEIKEAYRKLQKkyhpdiagqkgheHTLLLNEAYKVLMRGdlrkdydasigqmrfhfgtnasagfsrsswkgpprpealfvdenacigcrecvhhasntfvmdeatgcarvkvqygdsdqnievsvdscpvncihwvdreelpvlefliqpqpkkgygvfgggwerpaNVFMAAKAFNKQLQQqaaggsnprtaqstadketpAQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Flexible Loop (DISEMBL)
MAVAMVLSYHHVSgyvnpnksslsVIRCCNGrageraskkknyYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGgsnprtaqstadketpaQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Low Complexity Region (SEG)
MAVAMVLSYHHVSGYVNPNKSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Disordered region (IsUnstruct)
***AMVLSYHHVSGYVNPNKSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGF***********EALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAF***************************************KMERFSIIWNFFKQVFR*****
Disordered Region (DISOPRED)
*****************************************NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKD*DA***QMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEAT****************EVSVDSCPVNCIHWVDREELPVLEFL**********************FM***************************************ASMKIKMERFSIIWNFFKQVFREK*V*
Disordered Region (DISEMBL)
MAVAMVLSYHHVSGYVNPNKSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNA**********GPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQ*******************************ASMKIKMERFSIIWNFFKQVFREKHVQ
Disordered Region (DISPRO)
*AVAMVLSYHHVSGYVNPNKSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHF***ASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPR********************SMKIKMERFSIIWNFFKQVFRE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVAMVLSYHHVSGYVNPNKSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVFREKHVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q6MT07	372	Chaperone protein DnaJ OS	yes	no	0.255	0.201	0.494	2e-12
P71500	372	Chaperone protein DnaJ OS	yes	no	0.279	0.220	0.464	1e-11
B9DNJ9	377	Chaperone protein DnaJ OS	yes	no	0.215	0.167	0.531	2e-10
B8CXL0	375	Chaperone protein DnaJ OS	yes	no	0.273	0.213	0.441	2e-10
Q8G6C6	381	Chaperone protein DnaJ OS	yes	no	0.218	0.167	0.5	3e-10
Q2YT48	379	Chaperone protein DnaJ OS	yes	no	0.215	0.166	0.5	6e-10
P63972	379	Chaperone protein DnaJ OS	yes	no	0.215	0.166	0.5	6e-10
A8Z4B8	379	Chaperone protein DnaJ OS	yes	no	0.215	0.166	0.5	6e-10
Q6G8Y8	379	Chaperone protein DnaJ OS	yes	no	0.215	0.166	0.5	6e-10
Q6GGC1	379	Chaperone protein DnaJ OS	yes	no	0.215	0.166	0.5	6e-10

>sp|Q6MT07|DNAJ_MYCMS Chaperone protein DnaJ OS=Mycoplasma mycoides subsp. mycoides SC (strain PG1) GN=dnaJ PE=3 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 12/87 (13%)

Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLLLNEAYKVLMRGDL 97
           KKK+YYE+LGVS  A+ QEI++AYRKL K+YHPD+      H+  + +NEA  VL+  D 
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 98  RKDYDASIGQMRFHFGTNA---SAGFS 121
           RK YD         FG NA   S+GFS
Sbjct: 62  RKQYD--------QFGHNAFDGSSGFS 80

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Mycoplasma mycoides subsp. mycoides SC (strain PG1) (taxid: 272632)

>sp|P71500|DNAJ_MYCCT Chaperone protein DnaJ OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=dnaJ PE=3 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 2/84 (2%)

Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLLLNEAYKVLMRGDL 97
           KKK+YYE+LGVS  A+ QEI++AYRKL K+YHPD+      H+  + +NEA  VL+  D 
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 98  RKDYDASIGQMRFHFGTNASAGFS 121
           RK YD   G   F   +  S+ F+
Sbjct: 62  RKQYD-QFGHRAFDNSSGFSSNFT 84

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) (taxid: 340047)

>sp|B9DNJ9|DNAJ_STACT Chaperone protein DnaJ OS=Staphylococcus carnosus (strain TM300) GN=dnaJ PE=3 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LGVS +A+  EIK+AYRKL KKYHPDI  ++G E     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGVSKDASKDEIKKAYRKLSKKYHPDINQEEGAEEKFKEISEAYEVLSDENKR 62

Query: 99  KDYD 102
            +YD
Sbjct: 63  ANYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus carnosus (strain TM300) (taxid: 396513)

>sp|B8CXL0|DNAJ_HALOH Chaperone protein DnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 6/86 (6%)

Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDLR 98
           K+YYE+LGVS +A+ +EIK+AYR+L +KYHPDI        E    ++EAY++L   D R
Sbjct: 5   KDYYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDPDKR 64

Query: 99  KDYD----ASIGQMRFHFGTNASAGF 120
             YD    A I +  F+F   A  GF
Sbjct: 65  ARYDQYGHAGINEEDFNFEDFAQRGF 90

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)

>sp|Q8G6C6|DNAJ_BIFLO Chaperone protein DnaJ OS=Bifidobacterium longum (strain NCC 2705) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 42/64 (65%)

Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 101
           +YYE LGV   A+  EIK+AYRKL +KYHPDIAG +  +    +N AY VL   D R+ Y
Sbjct: 3   DYYETLGVERGASDDEIKKAYRKLSRKYHPDIAGPEFEDKFKEVNNAYDVLSNPDKRRMY 62

Query: 102 DASI 105
           D+ +
Sbjct: 63  DSGV 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Bifidobacterium longum (strain NCC 2705) (taxid: 206672)

>sp|Q2YT48|DNAJ_STAAB Chaperone protein DnaJ OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 99  KDYD 102
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

>sp|P63972|DNAJ_STAAW Chaperone protein DnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 99  KDYD 102
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain MW2) (taxid: 196620)

>sp|A8Z4B8|DNAJ_STAAT Chaperone protein DnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 99  KDYD 102
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

>sp|Q6G8Y8|DNAJ_STAAS Chaperone protein DnaJ OS=Staphylococcus aureus (strain MSSA476) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 99  KDYD 102
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

>sp|Q6GGC1|DNAJ_STAAR Chaperone protein DnaJ OS=Staphylococcus aureus (strain MRSA252) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LG+S +A+  EIK+AYRKL KKYHPDI  ++G +     ++EAY+VL   + R
Sbjct: 3   KRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKR 62

Query: 99  KDYD 102
             YD
Sbjct: 63  ASYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
359494012	302	PREDICTED: uncharacterized protein LOC10	0.935	0.907	0.687	1e-112
388513049	301	unknown [Lotus japonicus]	0.935	0.910	0.653	1e-107
224055541	299	predicted protein [Populus trichocarpa]	0.965	0.946	0.637	1e-104
356571315	276	PREDICTED: uncharacterized protein LOC10	0.901	0.956	0.681	1e-103
255567365	301	heat shock protein binding protein, puta	0.962	0.936	0.622	1e-100
449450080	301	PREDICTED: uncharacterized protein LOC10	0.969	0.943	0.599	5e-91
148909157	460	unknown [Picea sitchensis]	0.808	0.515	0.588	1e-83
359494021	284	PREDICTED: uncharacterized protein LOC10	0.767	0.792	0.608	8e-77
242095856	302	hypothetical protein SORBIDRAFT_10g01781	0.866	0.841	0.541	2e-73
302757113	409	hypothetical protein SELMODRAFT_403442 [	0.812	0.581	0.509	6e-73

>gi|359494012|ref|XP_003634709.1| PREDICTED: uncharacterized protein LOC100854700 [Vitis vinifera] gi|297735977|emb|CBI23951.3| unnamed protein product [Vitis vinifera]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 202/294 (68%), Positives = 232/294 (78%), Gaps = 20/294 (6%)

Query: 7   LSYHHVSGYVNPNKSSLSV--------------IRCCNGRAGERASKKKNYYELLGVSVE 52
           +S HH S    PN S   +              +RC +   G+ A  +K+YYELLGVSV+
Sbjct: 6   VSLHHFSL---PNSSQFDIPNNLTTRWRHKFTSVRCSSRSDGQSARTRKSYYELLGVSVD 62

Query: 53  ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHF 112
           +N QEIKEAYRKLQKKYHPD+AGQKGHE++L+LNEAY+VL R DLR++YDASIG+MR  F
Sbjct: 63  SNPQEIKEAYRKLQKKYHPDVAGQKGHEYSLMLNEAYRVLAREDLRREYDASIGKMRVGF 122

Query: 113 GTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD 172
           G   S G   S+WKGP RP+ALFVDEN CIGCRECVHHA NTFVMD+A GCARVKVQYGD
Sbjct: 123 GGIFS-GMGYSAWKGPLRPQALFVDENKCIGCRECVHHAGNTFVMDDALGCARVKVQYGD 181

Query: 173 SDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAF 232
            D+ IEVSVDSCPVNCIHWVDREEL +LEFLIQPQPK+GYGVFGGGWERPANVFMAAKAF
Sbjct: 182 DDKKIEVSVDSCPVNCIHWVDREELAILEFLIQPQPKEGYGVFGGGWERPANVFMAAKAF 241

Query: 233 NKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQV 286
           NKQL+QQA    + R A  T ++ETPAQAEARA+ASMKIKMER S IWN+ K+V
Sbjct: 242 NKQLKQQA--DHHQRNASRTVEEETPAQAEARANASMKIKMERLSRIWNWVKEV 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513049|gb|AFK44586.1| unknown [Lotus japonicus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/280 (65%), Positives = 225/280 (80%), Gaps = 6/280 (2%)

Query: 12  VSGYVNPN----KSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQK 67
           V G++N N    + +++V+RCCN R+ E+   + NYYELLGVSV+++  +IKEAYRKLQK
Sbjct: 20  VHGHMNFNSPMSRQNVTVVRCCNRRSWEKPRAQNNYYELLGVSVDSDTHQIKEAYRKLQK 79

Query: 68  KYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKG 127
           KYHPDI GQKGHE+TL+LN+AY+VLM  D R+ YD SIGQMR  FG N SA    S+W G
Sbjct: 80  KYHPDIVGQKGHEYTLMLNKAYEVLMTEDRRRKYDESIGQMRLRFGENNSAPLGYSTWNG 139

Query: 128 PPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVN 187
           P RP+ALFVDENACIGCREC+HHAS+TF+MDEA GCARVKVQYGD D+NIEVS++SCPVN
Sbjct: 140 PLRPQALFVDENACIGCRECLHHASHTFIMDEAVGCARVKVQYGDIDKNIEVSMESCPVN 199

Query: 188 CIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPR 247
           CIHWV+ E+LP LEFL+QPQPK+GYG+FGGGWERP+NVF AAK+FNKQL+ QA   + P 
Sbjct: 200 CIHWVETEDLPTLEFLMQPQPKEGYGIFGGGWERPSNVFTAAKSFNKQLKGQAT--TRPY 257

Query: 248 TAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVF 287
                 D+E+PAQAEARA ASM IKME F  I N+ +++F
Sbjct: 258 ERTGGIDQESPAQAEARAHASMMIKMENFLKIRNWVREIF 297

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055541|ref|XP_002298530.1| predicted protein [Populus trichocarpa] gi|222845788|gb|EEE83335.1| predicted protein [Populus trichocarpa]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/290 (63%), Positives = 219/290 (75%), Gaps = 7/290 (2%)

Query: 3   VAMVLSYHHVSGYVNPNKS----SLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEI 58
           ++M  ++   + Y NP+ +        +RCC+ R    A  KKNYYELLGVSV+++ Q+I
Sbjct: 11  LSMPKAFQIHASYFNPSTTISRHKCFPVRCCDRRREGSARTKKNYYELLGVSVDSSTQKI 70

Query: 59  KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASA 118
           KEAYRKLQKKYHPDIAG KGHE+ L+LNEAY VLM  DLR  YDASIG M    G N   
Sbjct: 71  KEAYRKLQKKYHPDIAGHKGHEYALMLNEAYNVLMTDDLRTKYDASIGHMTVQIGKNNYV 130

Query: 119 G-FSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNI 177
                SSWKGP RP+ALFVDENACIGCRECVHHASNTF++DE+ GCARVK QYGD DQ I
Sbjct: 131 NVMGSSSWKGPLRPQALFVDENACIGCRECVHHASNTFILDESIGCARVKTQYGDDDQKI 190

Query: 178 EVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQ 237
           EVS++SCPVNCI+WVDREEL +LEFLIQPQ K+GYGVFG GWER ANVFMAAK  +KQL+
Sbjct: 191 EVSIESCPVNCIYWVDREELALLEFLIQPQLKQGYGVFGQGWERTANVFMAAKTLSKQLR 250

Query: 238 QQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQVF 287
           QQA    N    ++T ++ETPAQAEARA+AS+KIKME FS IW+    +F
Sbjct: 251 QQAEHNHN--NVRTTVEEETPAQAEARANASLKIKMESFSKIWDSLNGIF 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571315|ref|XP_003553824.1| PREDICTED: uncharacterized protein LOC100776887 [Glycine max]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/270 (68%), Positives = 213/270 (78%), Gaps = 6/270 (2%)

Query: 20  KSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGH 79
           + +L+VIRCCN    E    + NYY+LLGVSV++N  EIKEAYRKLQKKYHPDI GQKGH
Sbjct: 5   RQNLAVIRCCNRGTWEIPMTQNNYYDLLGVSVDSNAHEIKEAYRKLQKKYHPDIFGQKGH 64

Query: 80  EHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDEN 139
           E+TL+LN+AY+VLM  DLR+ YD SIG MR  FG N +     S WKGP +P+ALFVDEN
Sbjct: 65  EYTLMLNKAYEVLMTEDLRRKYDESIGPMRLRFGGNNTQALGYSIWKGPVKPQALFVDEN 124

Query: 140 ACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPV 199
           ACIGCRECVHHAS+TF MDE  G ARVKVQYGD+DQ+IEVSV+SCPVNCIHWV+ EELPV
Sbjct: 125 ACIGCRECVHHASHTFTMDETQGSARVKVQYGDNDQSIEVSVESCPVNCIHWVETEELPV 184

Query: 200 LEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTAD--KET 257
           LEFLIQPQPK GYGVFGGGWERPANVF AAK+FNKQL+++    S  R  QS     +E+
Sbjct: 185 LEFLIQPQPKDGYGVFGGGWERPANVFTAAKSFNKQLKRK----STIRHDQSPGGTFEES 240

Query: 258 PAQAEARASASMKIKMERFSIIWNFFKQVF 287
           PAQAEA+A A MKIKME F  IWN+ K+  
Sbjct: 241 PAQAEAQARADMKIKMEGFLKIWNWVKETL 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567365|ref|XP_002524662.1| heat shock protein binding protein, putative [Ricinus communis] gi|223536023|gb|EEF37681.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/305 (62%), Positives = 225/305 (73%), Gaps = 23/305 (7%)

Query: 1   MAVAMVLSYHHVS--------GYVNPN------KSSLSVIRCCNGRAGERASKKKNYYEL 46
           M++++V  Y+  S        G  NPN      +     IRCC  R        KNYYEL
Sbjct: 4   MSLSIVSVYYPFSLPKLSQFHGCFNPNNTCSRWRQKCPRIRCC-IRQTASTRTDKNYYEL 62

Query: 47  LGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 106
           LGVSV+++ + IKEAYRKLQKKYHPDIAGQ+GHE+T +LNEAYK+LMR DLR++YD SIG
Sbjct: 63  LGVSVDSDVKGIKEAYRKLQKKYHPDIAGQQGHEYTSMLNEAYKILMREDLRREYDISIG 122

Query: 107 QMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARV 166
           Q    +G N +     SSW+GP R +ALFVDENACIGCRECVH+A NTFVMDEA G ARV
Sbjct: 123 Q----YGKNNNVVMGFSSWRGPFRSQALFVDENACIGCRECVHNACNTFVMDEANGSARV 178

Query: 167 KVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVF 226
           KVQ+GD DQ I+VSVDSCPVNCIHWVD EEL VLEFL QP+ K+GYGVFG GWERP NVF
Sbjct: 179 KVQFGDDDQQIQVSVDSCPVNCIHWVDTEELAVLEFLNQPKLKEGYGVFGQGWERPTNVF 238

Query: 227 MAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFFKQV 286
           +AAK+F+KQL+QQ     +    +ST ++ETPAQAEARA+ASMKIKMERFS IWN  K+ 
Sbjct: 239 VAAKSFSKQLKQQP----DYFQTRSTVEEETPAQAEARANASMKIKMERFSEIWNLVKKT 294

Query: 287 FREKH 291
           F  KH
Sbjct: 295 FWFKH 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450080|ref|XP_004142792.1| PREDICTED: uncharacterized protein LOC101222804 [Cucumis sativus] gi|449483772|ref|XP_004156687.1| PREDICTED: uncharacterized LOC101222804 [Cucumis sativus]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 184/307 (59%), Positives = 222/307 (72%), Gaps = 23/307 (7%)

Query: 1   MAVAMVLSYHHVSGYV-------NPNKSSLSVIRCCNGR----------AGERASKKKNY 43
           MA+++V S HH    +       +P   +  ++R   GR          A ER ++  NY
Sbjct: 1   MAISIVPSIHHSMPPIASSPSLPHPKDHNKHILRILVGRRQRLTSIRCSASERVNEM-NY 59

Query: 44  YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 103
           YELLGVS ++N QEIKEAYRKLQKK+HPDIAGQ+GHE+TL LNEAY VLMR D RK YD 
Sbjct: 60  YELLGVSADSNTQEIKEAYRKLQKKFHPDIAGQEGHEYTLRLNEAYGVLMREDRRKQYDT 119

Query: 104 SIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGC 163
             G MR  FG N   G   SSW GP RP+ALFVD NACIGCRECVH+ASNTF MDE  G 
Sbjct: 120 YTGGMRVRFG-NFGTGLGYSSWNGPLRPQALFVDGNACIGCRECVHNASNTFTMDETLGR 178

Query: 164 ARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPA 223
           ARVKVQYGD+D+ I+VSV+SCPVNCI+WV++EEL VLE+L+QP PKKGYGVFGGGWE PA
Sbjct: 179 ARVKVQYGDNDKKIQVSVESCPVNCIYWVEKEELEVLEYLMQPLPKKGYGVFGGGWEIPA 238

Query: 224 NVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERFSIIWNFF 283
           NVFMAAKAF KQL++Q     + +    T   ETPAQAEARA+A+MKI+ E+F  +WN+ 
Sbjct: 239 NVFMAAKAFTKQLERQE---QDTKYGAETVG-ETPAQAEARANATMKIQREKFHGVWNWV 294

Query: 284 KQVFREK 290
           KQVF ++
Sbjct: 295 KQVFSDR 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909157|gb|ABR17679.1| unknown [Picea sitchensis]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/250 (58%), Positives = 184/250 (73%), Gaps = 13/250 (5%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK 99
           +++YY++LGV V A  Q+I++AYRKLQKKYHPDIAG+KGH  TLLLNEAY++LMR DLR 
Sbjct: 51  QQDYYQVLGVPVGATPQDIRKAYRKLQKKYHPDIAGEKGHAMTLLLNEAYQILMRDDLRA 110

Query: 100 DYDASIG---QMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFV 156
            YD S G   QM   F      G + SSW GP RPEALFVDEN CIGCRECV HAS TF+
Sbjct: 111 KYDVSNGKNSQMNSQF-----TGLAYSSWNGPERPEALFVDENTCIGCRECVFHASKTFI 165

Query: 157 MDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFG 216
           MDEA GCARVKVQ+GD D  I+ S+DSCPVNCIHWVDRE+LP+LEFL +P PK   GVFG
Sbjct: 166 MDEALGCARVKVQFGDDDSQIKASLDSCPVNCIHWVDREDLPILEFLARPHPKTSNGVFG 225

Query: 217 GGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQAEARASASMKIKMERF 276
           GGWERP+NVFMAAK + +++ +     +     +S+A +ET AQ +AR +A +K++M   
Sbjct: 226 GGWERPSNVFMAAKTYKRKMNEMQISKT-----ESSASEETVAQHKARMNAQLKLRMGTL 280

Query: 277 SIIWNFFKQV 286
              W++  Q+
Sbjct: 281 WWFWSWIDQL 290

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494021|ref|XP_003634711.1| PREDICTED: uncharacterized protein LOC100855066 [Vitis vinifera] gi|297735976|emb|CBI23950.3| unnamed protein product [Vitis vinifera]

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 149/245 (60%), Positives = 179/245 (73%), Gaps = 20/245 (8%)

Query: 7   LSYHHVS-----GYVNPN------KSSLSVIRCCNGRAGERASK-KKNYYELLGVSVEAN 54
           +S HH S      + NPN      K   + +RC    AG R+++ +K+Y+ELLG SV++N
Sbjct: 6   VSLHHFSLTNSSQFDNPNNLITRWKPEFTSVRCSTSTAGRRSARTRKSYHELLGDSVDSN 65

Query: 55  GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGT 114
            Q+IKEAYRKLQKKYHPD+AG+KGHE++L+LNEAY VL   DLR++YDASIGQMR  F  
Sbjct: 66  TQQIKEAYRKLQKKYHPDVAGEKGHEYSLMLNEAYGVLAWEDLRREYDASIGQMRVGFWG 125

Query: 115 NASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSD 174
           + S G    SWKGP RP+A        IG RECVHHA NTFVM +A GCARVKV+YGD D
Sbjct: 126 SFS-GLGYRSWKGPLRPQA-------SIGSRECVHHAGNTFVMVDALGCARVKVRYGDDD 177

Query: 175 QNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNK 234
           + IEV VDSC VN IHWVDREEL +L+FLIQPQP++GYGVFGGGWERPA VFMAAK   K
Sbjct: 178 KKIEVWVDSCLVNWIHWVDREELAILKFLIQPQPQEGYGVFGGGWERPAIVFMAAKPSKK 237

Query: 235 QLQQQ 239
           +  QQ
Sbjct: 238 RPNQQ 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242095856|ref|XP_002438418.1| hypothetical protein SORBIDRAFT_10g017810 [Sorghum bicolor] gi|241916641|gb|EER89785.1| hypothetical protein SORBIDRAFT_10g017810 [Sorghum bicolor]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/262 (54%), Positives = 185/262 (70%), Gaps = 8/262 (3%)

Query: 22  SLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEH 81
           S SVIRCC   +  R   +  YY++LG++V +  QEIKEAYRKLQKK+HPDIAG KGH++
Sbjct: 35  SRSVIRCC---SAARGRTRDYYYQVLGITVHSTPQEIKEAYRKLQKKHHPDIAGYKGHDY 91

Query: 82  TLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENAC 141
           TLLLNEAYKVLMR +    +    G+ R   G   + G   SSW GP R +ALFVDEN C
Sbjct: 92  TLLLNEAYKVLMRDN--SMHAGGRGRSRVGLGVGYT-GDGYSSWNGPVRSQALFVDENKC 148

Query: 142 IGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLE 201
           IGCRECVHHA+ TF MD+  G A V++Q+GD DQ I+++V+SCPVNCIHWV+  ELPVLE
Sbjct: 149 IGCRECVHHAARTFAMDDVLGSAHVEIQFGDLDQQIQLAVESCPVNCIHWVESHELPVLE 208

Query: 202 FLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTAD--KETPA 259
           FL +PQPK+G+G+FGGGWERP NVF AA+ F K+L+++       ++++S  D   ET A
Sbjct: 209 FLSRPQPKEGHGIFGGGWERPRNVFAAAQNFAKRLEREEQELERDQSSRSPNDCEAETEA 268

Query: 260 QAEARASASMKIKMERFSIIWN 281
           QA+AR  A  +++ +     WN
Sbjct: 269 QAKARRCAGEELRWKTLFDAWN 290

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302757113|ref|XP_002961980.1| hypothetical protein SELMODRAFT_403442 [Selaginella moellendorffii] gi|300170639|gb|EFJ37240.1| hypothetical protein SELMODRAFT_403442 [Selaginella moellendorffii]

 Score =  280 bits (715), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 131/257 (50%), Positives = 180/257 (70%), Gaps = 19/257 (7%)

Query: 36  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 95
           R++ +++YYE+LGV   ++ ++I++AYR LQK++HPDI+G KGH  TL+LNEAY+VL   
Sbjct: 42  RSTNQQDYYEILGVLPGSSMEDIRKAYRNLQKQHHPDISGSKGHAMTLMLNEAYQVLSDE 101

Query: 96  DLRKDYDASIGQ------MRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVH 149
            LR  YDAS+        M +++   +  G   S+W GP RP+ +FVDENACIGCREC  
Sbjct: 102 RLRSKYDASLPHLASTRTMNYYYSKPSFTGSMYSTWNGPDRPQGIFVDENACIGCRECAF 161

Query: 150 HASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPK 209
            A NTF+ DE+TGCARVK Q+GD+D  ++V++ +CPVNCIHWV+R +LP+LE+LI+PQP+
Sbjct: 162 AAKNTFLFDESTGCARVKAQWGDADDTVKVAIQTCPVNCIHWVERSDLPILEYLIRPQPR 221

Query: 210 KGYGVFGGGWERPANVFMAAKAFNKQ---LQQQAAGGSNPRTAQSTADKETPAQAEARAS 266
              GV+GGGWERP+N+FMAAKAF  Q    QQQ    S+  +       ETPAQ +AR  
Sbjct: 222 PSNGVYGGGWERPSNIFMAAKAFKHQHHKSQQQDKDSSSNMS-------ETPAQRKARMD 274

Query: 267 ASMKIKMERFSIIWNFF 283
           A +K+KM  F   W+ F
Sbjct: 275 ADLKLKMGPF---WSMF 288

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
TAIR|locus:2166968	465	AT5G23240 [Arabidopsis thalian	0.795	0.501	0.364	7.4e-34
TAIR|locus:2052426	344	AT2G42750 [Arabidopsis thalian	0.709	0.604	0.298	4e-19
UNIPROTKB|Q55980	133	sll0662 "Ferredoxin (Bacterial	0.255	0.563	0.453	5.7e-15
TAIR|locus:5019474746	244	AT3G05345 "AT3G05345" [Arabido	0.631	0.758	0.280	2.1e-12
UNIPROTKB|F1NNE0	393	DNAJA3 "Uncharacterized protei	0.331	0.246	0.446	4.9e-10
UNIPROTKB|J9P8P4	453	DNAJA3 "Uncharacterized protei	0.313	0.203	0.45	8.6e-10
UNIPROTKB|Q96EY1	480	DNAJA3 "DnaJ homolog subfamily	0.313	0.191	0.45	9.7e-10
UNIPROTKB|Q8WW22	397	DNAJA4 "DnaJ homolog subfamily	0.276	0.204	0.421	1e-09
UNIPROTKB|Q864B5	397	DNAJA4 "PDJA1 chaperone" [Sus	0.276	0.204	0.421	1.3e-09
UNIPROTKB|F1PP91	399	DNAJA4 "Uncharacterized protei	0.276	0.203	0.421	1.3e-09

TAIR|locus:2166968 AT5G23240 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 89/244 (36%), Positives = 132/244 (54%)

Query:    29 CNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEA 88
             C   +   +    + Y+LLG+   ++  +IK AYR LQK+ HPDIAG  GH+  ++LNEA
Sbjct:    37 CRATSSSSSITDFDLYDLLGIDRSSDKSQIKSAYRALQKRCHPDIAGDPGHDMAIILNEA 96

Query:    89 YKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPE-ALFVDENACIGCREC 147
             Y++L     R+ YD    ++    G      +S   W GP   + A FVDE  C+GC +C
Sbjct:    97 YQLLSDPISRQAYDKEQAKLEELRGYTGKPIYS--VWCGPETEQRAAFVDEVKCVGCLKC 154

Query:   148 VHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQ 207
                A  TF ++ A G ARV  Q+ D +  I+ ++++CPV+CI  V+R +L  LEFL+  Q
Sbjct:   155 ALCAEKTFAIETAYGRARVVAQWADPESKIKEAIEACPVDCISMVERSDLAPLEFLMSKQ 214

Query:   208 PKKGY--GVFGGGWERPANVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPAQA-EAR 264
             P+     GV     ER +NVF+  K F    Q++ A   + RT + T+ +E    A EA 
Sbjct:   215 PRGNVRIGVGNTVGERVSNVFVDVKKF----QERYAKAMS-RTTKETSQREVQISAVEAI 269

Query:   265 ASAS 268
              S S
Sbjct:   270 RSIS 273

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2052426 AT2G42750 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 66/221 (29%), Positives = 109/221 (49%)

Query:    42 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGH--EHTLLLNEAYKVLMRGDLRK 99
             +YY +LG+  +A  +EIK+AY    K  HPD++G         + +N+ Y++L     R 
Sbjct:    76 DYYAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRM 135

Query:   100 DYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNTFVMDE 159
              YD   G     +   A   F   S    PR + +FVDE ACIGC+ C + A + F ++E
Sbjct:   136 VYDEIHG-----YTVTAINPFLDDS---TPR-DHVFVDEFACIGCKNCANVAPDIFQIEE 186

Query:   160 ATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGW 219
               G AR   Q G+ D  ++ +V++CPV+CIH     +L +LE  ++   +    +   G 
Sbjct:   187 DFGRARACNQRGNPDL-VQQAVETCPVDCIHQTSAAQLSLLEDEMRRVERVNVALMLSGM 245

Query:   220 ERPA-NVFMAAKAFNKQLQQQAAGGSNPRTAQSTADKETPA 259
                A +VF  A++  ++ Q +    +  R  +     ETP+
Sbjct:   246 GSGAVDVFRMARSRWEKRQAKVLNQARSRMMKRKNTDETPS 286

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|Q55980 sll0662 "Ferredoxin (Bacterial type ferredoxin family)" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 190 (71.9 bits), Expect = 5.7e-15, P = 5.7e-15
 Identities = 34/75 (45%), Positives = 48/75 (64%)

Query:   127 GPPRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV 186
             G  R   ++VDE  CIGC+ C H A NTF +++  G +R   Q GD +  I+ ++D+CPV
Sbjct:    39 GELRERGVYVDEVTCIGCKNCAHVAPNTFTIEQEHGRSRAFSQNGDDEAVIQEAIDTCPV 98

Query:   187 NCIHWVDREELPVLE 201
             +CIHWV  +EL  LE
Sbjct:    99 DCIHWVPYDELKHLE 113

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:5019474746 AT3G05345 "AT3G05345" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 58/207 (28%), Positives = 92/207 (44%)

Query:    12 VSGYVNPNKS-SLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYH 70
             +S + N   S S   I  C G+  E      + Y +LGV    +  E+K A+R   K+YH
Sbjct:    13 ISFFSNSRYSTSQRFIPSCRGKNREDPLSSSSPYSILGVEPSCSSSELKAAFRAKVKQYH 72

Query:    71 PDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPR 130
             PD+  + G    +++    +++   ++  +Y  S              G     +  P  
Sbjct:    73 PDV-NKDGSNSDIMIR---RIIQAYEMLTNYSRS----------EIIEGECLDPFDHP-E 117

Query:   131 PEAL--FVDENACIGCR---ECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCP 185
              EAL  FV+E  C+G R    C   AS+ F  D ++G AR   Q    D  ++ +V+ CP
Sbjct:   118 CEALDVFVNEVLCVGKRCSYPCFETASHVFSCD-SSGTARAMSQGHGEDYRVQSAVNQCP 176

Query:   186 VNCIHWVDREELPVLEFLIQPQPKKGY 212
              NCIH+V   +  +LE L+     K Y
Sbjct:   177 RNCIHYVTPSQRIILEELLDSVVDKPY 203

GO:0008150 "biological_process" evidence=ND

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|F1NNE0 DNAJA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 167 (63.8 bits), Expect = 4.9e-10, P = 4.9e-10
 Identities = 46/103 (44%), Positives = 54/103 (52%)

Query:    37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMR 94
             A  K++YYE+LGV   A+ +EIK+AY +L KKYHPD      K  E    L EAY+VL  
Sbjct:    26 ARAKEDYYEVLGVPRSASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFAQLAEAYEVLSD 85

Query:    95 GDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPR--PEALF 135
                RK YDA  G   F  G    AG  R  W   P   PE LF
Sbjct:    86 EVKRKQYDA-YGTASFDPGATG-AGAGRQYWSSGPSIDPEELF 126

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005133 "interferon-gamma receptor binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005884 "actin filament" evidence=IEA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0006469 "negative regulation of protein kinase activity" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IEA

GO:0034341 "response to interferon-gamma" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IEA

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=IEA

UNIPROTKB|J9P8P4 DNAJA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 8.6e-10, P = 8.6e-10
 Identities = 45/100 (45%), Positives = 56/100 (56%)

Query:    40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDL 97
             K++YY++LGV   A+ +EIK+AY +L KKYHPD      K  E    L EAY+VL     
Sbjct:    91 KEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 150

Query:    98 RKDYDASIGQMRFHFGTNASAGFSRSSWKGPPR--PEALF 135
             RK YDA  G   F  G  +S    +S WKG P   PE LF
Sbjct:   151 RKQYDA-YGSAGFDPGAGSSG---QSYWKGGPTVDPEELF 186

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q96EY1 DNAJA3 "DnaJ homolog subfamily A member 3, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 45/100 (45%), Positives = 56/100 (56%)

Query:    40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDL 97
             K++YY++LGV   A+ +EIK+AY +L KKYHPD      K  E    L EAY+VL     
Sbjct:    91 KEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 150

Query:    98 RKDYDASIGQMRFHFGTNASAGFSRSSWKGPPR--PEALF 135
             RK YDA  G   F  G   ++G   S WKG P   PE LF
Sbjct:   151 RKQYDA-YGSAGFDPG---ASGSQHSYWKGGPTVDPEELF 186

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;IDA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005083 "small GTPase regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006264 "mitochondrial DNA replication" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007569 "cell aging" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0030971 "receptor tyrosine kinase binding" evidence=IEA

GO:0033077 "T cell differentiation in thymus" evidence=IEA

GO:0042102 "positive regulation of T cell proliferation" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0005133 "interferon-gamma receptor binding" evidence=IDA

GO:0034341 "response to interferon-gamma" evidence=IDA

GO:0060336 "negative regulation of interferon-gamma-mediated signaling pathway" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0008385 "IkappaB kinase complex" evidence=IDA

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0050821 "protein stabilization" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0043124 "negative regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IDA

GO:0007528 "neuromuscular junction development" evidence=IDA

GO:0033256 "I-kappaB/NF-kappaB complex" evidence=IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IDA

GO:0006469 "negative regulation of protein kinase activity" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0071340 "skeletal muscle acetylcholine-gated channel clustering" evidence=ISS

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0031594 "neuromuscular junction" evidence=ISS

GO:0045211 "postsynaptic membrane" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|Q8WW22 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
 Identities = 35/83 (42%), Positives = 48/83 (57%)

Query:    39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 98
             K+  YY++LGV   A+ +EIK+AYRKL  KYHPD    +G E   L+++AY+VL     R
Sbjct:     3 KETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEG-EKFKLISQAYEVLSDPKKR 61

Query:    99 KDYDASIGQMRFHFGTNASAGFS 121
               YD   G+     G + S  FS
Sbjct:    62 DVYDQG-GEQAIKEGGSGSPSFS 83

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q864B5 DNAJA4 "PDJA1 chaperone" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 35/83 (42%), Positives = 48/83 (57%)

Query:    39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 98
             K+  YY++LGV   A+ +EIK+AYRKL  KYHPD    +G E   L+++AY+VL     R
Sbjct:     3 KETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEG-EKFKLISQAYEVLSDPKKR 61

Query:    99 KDYDASIGQMRFHFGTNASAGFS 121
               YD   G+     G + S  FS
Sbjct:    62 DIYDQG-GEQAIKEGGSGSPSFS 83

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1PP91 DNAJA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 35/83 (42%), Positives = 48/83 (57%)

Query:    39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 98
             K+  YY++LGV   A+ +EIK+AYRKL  KYHPD    +G E   L+++AY+VL     R
Sbjct:     4 KETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEG-EKFKLISQAYEVLSDPKKR 62

Query:    99 KDYDASIGQMRFHFGTNASAGFS 121
               YD   G+     G + S  FS
Sbjct:    63 DIYDQG-GEQAIKEGGSGSPSFS 84

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	293
pfam00226	63	pfam00226, DnaJ, DnaJ domain	7e-19
pfam13459	60	pfam13459, Fer4_15, 4Fe-4S single cluster domain	1e-18
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	8e-17
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-16
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-15
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-15
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	5e-15
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	9e-15
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-14
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-13
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-13
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-13
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	3e-13
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	4e-13
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	1e-12
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-12
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	2e-12
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	3e-12
pfam13370	58	pfam13370, Fer4_13, 4Fe-4S single cluster domain	6e-12
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-11
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-11
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-11
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-11
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	7e-11
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-10
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	8e-10
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	9e-10
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-09
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-09
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	4e-09
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	6e-09
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-08
COG1141	68	COG1141, Fer, Ferredoxin [Energy production and co	2e-08
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	3e-08
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	4e-08
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	5e-08
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	8e-08
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	2e-06
TIGR01944	165	TIGR01944, rnfB, electron transport complex, RnfAB	1e-05
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-05
PRK05113	191	PRK05113, PRK05113, electron transport complex pro	3e-05
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	9e-05
COG2878	198	COG2878, COG2878, Predicted NADH:ubiquinone oxidor	4e-04
PRK06991	270	PRK06991, PRK06991, ferredoxin; Provisional	0.002
TIGR02951	161	TIGR02951, DMSO_dmsB, DMSO reductase, iron-sulfur	0.003
PRK05014	171	PRK05014, hscB, co-chaperone HscB; Provisional	0.004
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	0.004

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 78.3 bits (194), Expect = 7e-19
 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL--LLNEAYKVLMRGDLRK 99
           +YYE+LGV  +A+ +EIK+AYRKL  KYHPD              +NEAY+VL   + R 
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 100 DYD 102
            YD
Sbjct: 61  IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|222145 pfam13459, Fer4_15, 4Fe-4S single cluster domain

 Score = 77.7 bits (192), Expect = 1e-18
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 135 FVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG----DSDQNIEVSVDSCPVNCIH 190
           FVD + CIGC  CV  A + F +DE  G ARV +  G    D +++ + + D+CPV+ IH
Sbjct: 1   FVDRDTCIGCGLCVALAPDVFELDE-DGKARVILDEGEVPDDLEEDAQEAADACPVDAIH 59

Query: 191 W 191
            
Sbjct: 60  V 60

Length = 60

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 79.2 bits (195), Expect = 8e-17
 Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 12/87 (13%)

Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYKVLMRGDL 97
           KKK+YYE+LGVS  A+ QEI++AYRKL K+YHPD+      H+  + +NEA  VL+  D 
Sbjct: 2   KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61

Query: 98  RKDYDASIGQMRFHFGTNA---SAGFS 121
           RK YD         FG  A   S+GFS
Sbjct: 62  RKQYD--------QFGHAAFDGSSGFS 80

Length = 372

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 78.8 bits (195), Expect = 1e-16
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 10/70 (14%)

Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVL 92
            K++YYE+LGVS +A+ +EIK+AYRKL KKYHPD       A +K  E    +NEAY+VL
Sbjct: 2   AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKE----INEAYEVL 57

Query: 93  MRGDLRKDYD 102
              + R  YD
Sbjct: 58  SDPEKRAAYD 67

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 38/81 (46%), Positives = 47/81 (58%), Gaps = 8/81 (9%)

Query: 43  YYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYKVLMRGDLRKDY 101
           YYE+LGVS +A+ +EIK+AYRKL KKYHPD    K   E    +NEAY+VL   + R  Y
Sbjct: 2   YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQY 61

Query: 102 DASIGQMRF-HFGTNASAGFS 121
           D      +F H G N   G  
Sbjct: 62  D------QFGHAGFNGGGGGG 76

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 68.0 bits (167), Expect = 4e-15
 Identities = 26/53 (49%), Positives = 36/53 (67%), Gaps = 2/53 (3%)

Query: 42 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVL 92
          +YY++LGV  +A+ +EIK+AYRKL  KYHPD      +  E    +NEAY+VL
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVL 53

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 67.6 bits (166), Expect = 5e-15
 Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL---LLNEAYKVL 92
           +YYE+LGV  +A+  EIK+AYRKL  KYHPD       E       +NEAY+VL
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVL 55

Length = 60

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 73.3 bits (180), Expect = 9e-15
 Identities = 37/88 (42%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           KK+YYE+LGVS  A  +EIK+AYR+L +KYHPD       E     +NEAY+VL   + R
Sbjct: 2   KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKR 61

Query: 99  KDYD-----ASIGQMRFHFGTNASAGFS 121
           K YD     A  G  +   G    + F 
Sbjct: 62  KLYDQFGHAAFSGSGQQQQGQEGFSDFG 89

Length = 382

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 11/92 (11%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDL 97
           K++YYE+LGVS  A+  EIK+AYRKL  KYHPD     ++  EH   +NEAY+VL   D 
Sbjct: 2   KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61

Query: 98  RKDYDASIGQMRFHFGTNASAGFSRSSWKGPP 129
           R+ YD         FG +A  G S +S  GP 
Sbjct: 62  RRRYD--------QFG-HAGVGSSAASGGGPG 84

Length = 397

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 9/68 (13%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-----AGQKGHEHTLLLNEAYKVLMR 94
           K++YYE+LGVS  A+  EIK+AYRKL KKYHPDI     A +K  E    ++EAY+VL  
Sbjct: 3   KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKE----ISEAYEVLSD 58

Query: 95  GDLRKDYD 102
              R  YD
Sbjct: 59  DQKRAQYD 66

Length = 376

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 69.8 bits (171), Expect = 2e-13
 Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 11/94 (11%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVLM 93
           KK+YYE+LGV   A  +EIK+AYR+L KKYHPD+      A QK  E    +NEAY++L 
Sbjct: 4   KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKE----INEAYEILS 59

Query: 94  RGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKG 127
               R  YD   G   F  G     GF +  + G
Sbjct: 60  DPQKRAQYD-QFGHAAFDPGGFGQGGFGQGGFGG 92

Length = 386

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 8/82 (9%)

Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKD 100
           +YYE+LGVS +A+  E+K AYR+L +KYHPD+  + G E     +N AY+VL   + R  
Sbjct: 4   DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRAR 63

Query: 101 YDASIGQMRF-HFGTNASAGFS 121
           YD      +F   G + +AGF 
Sbjct: 64  YD------QFGEAGVSGAAGFP 79

Length = 374

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 68.0 bits (166), Expect = 3e-13
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 13/93 (13%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
            K+YY +LGV   A+  EIK+A++KL +KYHPD+    G E     +NEAY VL   + R
Sbjct: 3   YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKR 62

Query: 99  KDYDASIGQMRFHFGTNASAGFSRSSWKGPPRP 131
           + YD         +GT A++    + W+GPP  
Sbjct: 63  RIYDT--------YGTTAAS----AGWQGPPPG 83

Length = 291

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 68.3 bits (167), Expect = 4e-13
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 9/83 (10%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LGV   A+ +EIK+AYRKL +KYHPD++ ++G E     ++EAY VL   + R
Sbjct: 4   KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKR 63

Query: 99  KDYDASIGQMRFHFGTNASAGFS 121
           + YD         FG     GFS
Sbjct: 64  QRYD--------QFGHAGMDGFS 78

Length = 378

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD-IAGQKGHEHTL-LLNEAYKVLMRGDL 97
           K++YYE+LGVS  A+  EIK+AYRKL  KYHPD   G K  E     + EAY+VL     
Sbjct: 3   KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQK 62

Query: 98  RKDYD 102
           R  YD
Sbjct: 63  RAAYD 67

Length = 371

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 38/79 (48%), Positives = 43/79 (54%), Gaps = 9/79 (11%)

Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKD 100
           +YYELLGVS  A+  EIK AYRKL  KYHPD   +KG       +NEAY VL   + R  
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62

Query: 101 YDASIGQMRFHFGTNASAG 119
           YD         FGT   AG
Sbjct: 63  YD--------RFGTAPGAG 73

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
              YY+ LGVS +A+  EIK+AYRKL KKYHPDI  + G E     + EAY+ L     R
Sbjct: 3   NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKR 62

Query: 99  KDYD 102
             YD
Sbjct: 63  AAYD 66

Length = 380

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 64.8 bits (157), Expect = 3e-12
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 37  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD---IAGQKGHEHTLLLNEAYKVLM 93
            S   +YYE+LGV   A+ +EIK+AYRKL  KYHPD      +   E    +NEAY++L 
Sbjct: 2   MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILS 61

Query: 94  RGDLRKDYDASIGQ 107
             + R +YD     
Sbjct: 62  DPERRAEYDKIGAD 75

Length = 237

>gnl|CDD|222081 pfam13370, Fer4_13, 4Fe-4S single cluster domain

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 136 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEV--SVDSCPVNCIHW 191
           VD + CIGC  C   A + F  D+  G + V  Q    ++      ++DSCPV  I  
Sbjct: 1   VDRDTCIGCGLCREIAPDVFAYDDDGGASVVLDQPVPEEEEAAALEALDSCPVAAIGT 58

Length = 58

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 13/93 (13%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 97
            K+YYE+LG+   A+  EIK+A+RKL  KYHPD   G K  E     +NEAY+VL     
Sbjct: 3   SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQK 62

Query: 98  RKDYDASIGQMRFHFGT---NASAGFSRSSWKG 127
           +  YD         FGT   N + GF    + G
Sbjct: 63  KAQYD--------QFGTADFNGAGGFGSGGFGG 87

Length = 380

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 28/118 (23%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVLM 93
           +++YYE+LGVS +A+  EIK+AYRKL  +YHPD       A QK  E      EAY+VL 
Sbjct: 3   QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAA----EAYEVLR 58

Query: 94  RGDLRKDYD----ASIGQMRF--HFGTNASA------------GFSRSSWKGPPRPEA 133
             + R  YD    A +        F +                GFS    +  PRP+A
Sbjct: 59  DAEKRARYDRFGHAGVNGNGGFGGFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQA 116

Length = 373

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 36/90 (40%), Positives = 49/90 (54%), Gaps = 13/90 (14%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-------AGQKGHEHTLLLNEAYKVL 92
           KK+YYE+LGVS  A  +EIK AY++L K++HPD        A QK  E    + EAY+VL
Sbjct: 3   KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKE----IQEAYEVL 58

Query: 93  MRGDLRKDYD--ASIGQMRFHFGTNASAGF 120
                R  YD    +G+   +  T +  GF
Sbjct: 59  SDPQKRAMYDRFGYVGEQPPYQETESGGGF 88

Length = 369

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 38  SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGD 96
           +  ++YYE+LG+S +A+ ++IK+AYRKL  KYHPD   +   E     ++EAY VL   +
Sbjct: 2   ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAE 61

Query: 97  LRKDYD 102
            R  YD
Sbjct: 62  KRAQYD 67

Length = 377

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 62.5 bits (151), Expect = 7e-11
 Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LG+  +A+ QEIK+A+RKL KKYHPD             +NEA  VL     R
Sbjct: 1   KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKR 60

Query: 99  KDYD 102
            +YD
Sbjct: 61  ANYD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDL 97
           +K+YY++LGV  +A   EIK+AYRKL ++YHPD      K  E    ++EAY VL     
Sbjct: 8   EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67

Query: 98  RKDYDASIGQMRFHFGTNASAGFSRSSWKGPP 129
           RK+YD +    R  FG   + GF      G  
Sbjct: 68  RKEYDEA----RSLFG---NGGFRPGPGGGGG 92

Length = 389

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)

Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLRK 99
           K+YY ++GV    + + IK AYR+L +KYHPD++ +   E     + EA++VL     R 
Sbjct: 4   KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63

Query: 100 DYDASIGQMRFH 111
           +YD    Q+  H
Sbjct: 64  EYD----QLWQH 71

Length = 306

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDLR 98
           K++Y+ LGVS +A+ +EIK+AYRKL ++ HPD         E    ++EA+ VL     R
Sbjct: 9   KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68

Query: 99  KDYD------ASIGQMRFHFGTNASAG 119
           K+YD      A  G     F      G
Sbjct: 69  KEYDETRRLFAGGGFGGRRFDGGGGFG 95

Length = 392

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLLLNEAYKVLMRGDLRK 99
           ++YY LLGVS  A+  EIK AYRKL ++ HPD+   ++  E    ++ AY+VL   + R+
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62

Query: 100 DYD 102
             D
Sbjct: 63  IVD 65

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 10/90 (11%)

Query: 38  SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRG 95
             K++YYE+LGV+ +A+ +EIK++YRKL  KYHPD   G K  E       EAY+VL   
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDP 60

Query: 96  DLRKDYDASIGQMRF-HFGTNASAGFSRSS 124
             R  YD      ++ H G +   GFS  S
Sbjct: 61  KKRGIYD------QYGHEGLS-GTGFSGFS 83

Length = 366

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 37  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMR 94
            ++K++YYE+LGVS  A   EIK+AYRK   +YHPD     ++  E      EAY VL  
Sbjct: 1   MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSD 60

Query: 95  GDLRKDYDASIGQMRFHFGTNASAG 119
            D R  YD   G    H G   +AG
Sbjct: 61  PDKRSRYD-QFG----HAGVGGAAG 80

Length = 386

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 56.5 bits (136), Expect = 4e-09
 Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLL----NEAYKVLMRG 95
           K++YYE+LG+S  A+  EIK+AYRK+  KYHPD    KG++    +     EAY+VL+  
Sbjct: 2   KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPD--KNKGNKEAESIFKEATEAYEVLIDD 59

Query: 96  DLRKDYDASIGQMRFHFG---TNASAGFS 121
           + R  YD   G   F  G      S GFS
Sbjct: 60  NKRAQYD-RFGHTAFEGGGGFEGFSGGFS 87

Length = 365

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI---AGQKGHEHTLLLNEAYKVLMRGDL 97
           K+YY++LGV   A+ ++IK+A+R+L KK+HPD+      +  E    ++EAY+VL     
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62

Query: 98  RKDYD 102
           R+ YD
Sbjct: 63  RRQYD 67

Length = 365

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 7/81 (8%)

Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDLR 98
           ++YY++LGVS  AN +EIK AYRKL  KYHPD   G K  E       EAY++L     R
Sbjct: 4   RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKR 63

Query: 99  KDYDASIGQMRFHFGTNASAG 119
           + YD   G+     G NA AG
Sbjct: 64  QAYD-QFGKA----GVNAGAG 79

Length = 372

>gnl|CDD|224064 COG1141, Fer, Ferredoxin [Energy production and conversion]

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 136 VDENACIGCRECVHHASNTFVMDEATGCARV------KVQYGDSD-QNIEVSVDSCPVNC 188
           VD + CIGC  C+  A + F  D+  G A V      + +  +   ++ E + ++CP + 
Sbjct: 5   VDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDA 63

Query: 189 IHWVD 193
           I   +
Sbjct: 64  IKVEE 68

Length = 68

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 53.9 bits (129), Expect = 3e-08
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRK 99
           ++YY++LGVS  A+  ++K+AY KL K+YHPD    K  E     +N AY VL     R 
Sbjct: 3   QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62

Query: 100 DYD 102
            YD
Sbjct: 63  AYD 65

Length = 372

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDLRK 99
           +YY +LGVS  A+ +EIK+AYRKL  KYHPD   G    E     ++EAY+VL     R+
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61

Query: 100 DYD 102
            YD
Sbjct: 62  SYD 64

Length = 391

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 3/72 (4%)

Query: 31  GRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYK 90
           GR       +K  YE+L +S +    EIK+AYRKL  K+HPD  G    E    ++ AY+
Sbjct: 19  GRRKREVDNEK-LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP--EKFKEISRAYE 75

Query: 91  VLMRGDLRKDYD 102
           VL   + RK YD
Sbjct: 76  VLSDPEKRKIYD 87

Length = 421

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 52.3 bits (125), Expect = 8e-08
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLR 98
           K++YYE+LGV   A+  E+K+AYRKL +KYHPD+      E     + EAY  L     +
Sbjct: 3   KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKK 62

Query: 99  KDYD 102
             YD
Sbjct: 63  AHYD 66

Length = 371

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTL-LLNEAYKVLMRGDLRK 99
           +YYE+L V   +N + IK++YRKL  KYHPD  AG K  E    L+NEAY VL     R 
Sbjct: 4   SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 100 DYD 102
            YD
Sbjct: 64  LYD 66

Length = 369

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 44  YELLGVSVEANGQEIKEAYRKLQKKYHPD 72
           Y++LGVS   + QEIK AYRKL  ++HPD
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPD 231

Length = 267

>gnl|CDD|233648 TIGR01944, rnfB, electron transport complex, RnfABCDGE type, B subunit

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 25/72 (34%)

Query: 129 PRPEALFVDENACIGCRECVH-----------HASNTFVMDEATGCARVKVQYGDSDQNI 177
             P    +DE+ CIGC +C+             A +T + DE TGC              
Sbjct: 103 QPPMVALIDEDNCIGCTKCIQACPVDAIVGAAKAMHTVIADECTGC-------------- 148

Query: 178 EVSVDSCPVNCI 189
           ++ V+ CP +CI
Sbjct: 149 DLCVEPCPTDCI 160

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit [Energy metabolism, Electron transport]. Length = 165

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 43  YYELLGVSVEANGQEIKEAYRKLQKKYHP-DIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 101
           +Y++LGV V A+ +EI E Y KL + Y+P   +G +G      +NEAY++L   D +K Y
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634

Query: 102 D 102
           +
Sbjct: 635 N 635

Length = 1136

>gnl|CDD|235347 PRK05113, PRK05113, electron transport complex protein RnfB; Provisional

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 25/72 (34%)

Query: 129 PRPEALFVDENACIGCRECVH-----------HASNTFVMDEATGCARVKVQYGDSDQNI 177
           P  +  F+DE+ CIGC +C+             A +T + D  TGC              
Sbjct: 104 PARKVAFIDEDNCIGCTKCIQACPVDAIVGATKAMHTVISDLCTGC-------------- 149

Query: 178 EVSVDSCPVNCI 189
           ++ V  CP +CI
Sbjct: 150 DLCVAPCPTDCI 161

Length = 191

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 44  YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGD 96
           YE+LG+  + + ++IK+ YR L  K+HPD A            E    + +AY +L    
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 97  LRKDY 101
            R++Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|225433 COG2878, COG2878, Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 25/79 (31%)

Query: 123 SSWKGPPRPEALFVDENACIGCRECVH-----------HASNTFVMDEATGCARVKVQYG 171
           S            +DE  CIGC +C+             A +T + D  TGC        
Sbjct: 99  SEHGEEQARMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIADLCTGC-------- 150

Query: 172 DSDQNIEVSVDSCPVNCIH 190
                 ++ V  CP +CI 
Sbjct: 151 ------DLCVAPCPTDCIE 163

Length = 198

>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 26/75 (34%)

Query: 127 GPPRPEAL-FVDENACIGCRECVH-----------HASNTFVMDEATGCARVKVQYGDSD 174
           G  RP A+  +DE  CIGC  C+               +T + D  TGC           
Sbjct: 72  GVERPRAVAVIDEQLCIGCTLCMQACPVDAIVGAPKQMHTVLADLCTGC----------- 120

Query: 175 QNIEVSVDSCPVNCI 189
              ++ V  CPV+CI
Sbjct: 121 ---DLCVPPCPVDCI 132

Length = 270

>gnl|CDD|131996 TIGR02951, DMSO_dmsB, DMSO reductase, iron-sulfur subunit

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 135 FVDENACIGCRECV--------HHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV 186
            VD++ CIGCR CV         +     VM +  GC        +        VD+CP+
Sbjct: 91  LVDQDKCIGCRYCVWACPYGAPQYDPQQGVMGKCDGC----YDRVEKGLR-PACVDACPM 145

Query: 187 NCIHWVDREEL 197
             + +   +EL
Sbjct: 146 RALDFGPIDEL 156

This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor. Length = 161

>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 17/64 (26%)

Query: 42 NYYELLGVSV--EANGQEIKEAYRKLQKKYHPD-----------IAGQKGHEHTLLLNEA 88
          +Y+ L G+    + + Q +   Y++LQ+++HPD           +A Q+       +N+A
Sbjct: 2  DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQ----AATINDA 57

Query: 89 YKVL 92
          Y+ L
Sbjct: 58 YQTL 61

Length = 171

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 44  YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG 78
            ++LGV ++A+   IK+AYRKL  + HPD A  KG
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKG 150

Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	100.0
PTZ00037	421	DnaJ_C chaperone protein; Provisional	100.0
PRK14296	372	chaperone protein DnaJ; Provisional	100.0
PRK14298	377	chaperone protein DnaJ; Provisional	100.0
PRK14282	369	chaperone protein DnaJ; Provisional	100.0
PRK14288	369	chaperone protein DnaJ; Provisional	100.0
PRK14287	371	chaperone protein DnaJ; Provisional	99.98
PRK14276	380	chaperone protein DnaJ; Provisional	99.98
PRK14280	376	chaperone protein DnaJ; Provisional	99.97
PRK14278	378	chaperone protein DnaJ; Provisional	99.97
PRK14297	380	chaperone protein DnaJ; Provisional	99.97
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.97
PRK14279	392	chaperone protein DnaJ; Provisional	99.97
PRK14291	382	chaperone protein DnaJ; Provisional	99.97
PRK14286	372	chaperone protein DnaJ; Provisional	99.97
PRK14277	386	chaperone protein DnaJ; Provisional	99.97
PRK14285	365	chaperone protein DnaJ; Provisional	99.97
PRK14294	366	chaperone protein DnaJ; Provisional	99.97
PRK14284	391	chaperone protein DnaJ; Provisional	99.97
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.97
PRK14283	378	chaperone protein DnaJ; Provisional	99.97
PRK14301	373	chaperone protein DnaJ; Provisional	99.97
PRK14290	365	chaperone protein DnaJ; Provisional	99.97
PRK10767	371	chaperone protein DnaJ; Provisional	99.97
PRK14281	397	chaperone protein DnaJ; Provisional	99.97
PRK14289	386	chaperone protein DnaJ; Provisional	99.96
PRK14295	389	chaperone protein DnaJ; Provisional	99.96
PRK14292	371	chaperone protein DnaJ; Provisional	99.96
PRK14293	374	chaperone protein DnaJ; Provisional	99.96
PRK14300	372	chaperone protein DnaJ; Provisional	99.96
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.93
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.9
PRK14299	291	chaperone protein DnaJ; Provisional	99.88
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.87
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.69
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.69
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.65
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.63
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.62
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.61
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.61
PHA03102	153	Small T antigen; Reviewed	99.59
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.59
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.57
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.51
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.48
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.48
PRK05014	171	hscB co-chaperone HscB; Provisional	99.43
PRK01356	166	hscB co-chaperone HscB; Provisional	99.42
PTZ00100	116	DnaJ chaperone protein; Provisional	99.4
PRK00294	173	hscB co-chaperone HscB; Provisional	99.37
PRK03578	176	hscB co-chaperone HscB; Provisional	99.36
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.32
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.26
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.24
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.23
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.22
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.22
PHA02624	647	large T antigen; Provisional	99.17
PRK01773	173	hscB co-chaperone HscB; Provisional	99.07
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.04
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.88
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.6
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.5
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.33
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.24
PF13370	58	Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A	98.11
PF13459	65	Fer4_15: 4Fe-4S single cluster domain	98.1
COG1141	68	Fer Ferredoxin [Energy production and conversion]	98.01
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.18
KOG0431	453	consensus Auxilin-like protein and related protein	96.44
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.25
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	95.34
PRK14300	372	chaperone protein DnaJ; Provisional	95.15
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.15
PRK14295	389	chaperone protein DnaJ; Provisional	94.87
PRK14285	365	chaperone protein DnaJ; Provisional	94.87
PRK14291	382	chaperone protein DnaJ; Provisional	94.85
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	94.82
PRK14282	369	chaperone protein DnaJ; Provisional	94.76
PRK14284	391	chaperone protein DnaJ; Provisional	94.76
PRK14278	378	chaperone protein DnaJ; Provisional	94.69
PRK14301	373	chaperone protein DnaJ; Provisional	94.26
PRK14290	365	chaperone protein DnaJ; Provisional	94.24
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	94.23
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	94.21
PRK14286	372	chaperone protein DnaJ; Provisional	94.15
PRK14281	397	chaperone protein DnaJ; Provisional	94.1
PRK14298	377	chaperone protein DnaJ; Provisional	94.0
PRK14279	392	chaperone protein DnaJ; Provisional	93.76
PRK14294	366	chaperone protein DnaJ; Provisional	93.57
PRK14297	380	chaperone protein DnaJ; Provisional	93.57
PRK14288	369	chaperone protein DnaJ; Provisional	93.51
PRK14280	376	chaperone protein DnaJ; Provisional	93.45
PRK14277	386	chaperone protein DnaJ; Provisional	93.28
PRK10767	371	chaperone protein DnaJ; Provisional	93.22
PRK14289	386	chaperone protein DnaJ; Provisional	93.2
PRK14276	380	chaperone protein DnaJ; Provisional	93.07
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	92.98
PRK14287	371	chaperone protein DnaJ; Provisional	92.36
PRK14283	378	chaperone protein DnaJ; Provisional	92.29
PRK14296	372	chaperone protein DnaJ; Provisional	92.23
PLN03165	111	chaperone protein dnaJ-related; Provisional	92.12
PF06902	64	Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro:	91.22
PTZ00037	421	DnaJ_C chaperone protein; Provisional	91.18
PRK14293	374	chaperone protein DnaJ; Provisional	90.51
PF12797	22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	90.06
PRK14292	371	chaperone protein DnaJ; Provisional	89.46
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	89.45
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	85.7
PF13446	62	RPT: A repeated domain in UCH-protein	84.8
COG0437	203	HybA Fe-S-cluster-containing hydrogenase component	82.37
KOG3256	212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	80.16

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.6e-41  Score=315.03  Aligned_cols=207  Identities=24%  Similarity=0.290  Sum_probs=162.7

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCC-C-chHHHHHHHHHHHHhhcccccccccccccccccc--ccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG-Q-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFG  113 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~-~-~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~--~~~  113 (293)
                      +..+|||+||||+++||.+|||+|||+||++||||+|+ + +++++|++|++||+||+||++|+.||+++.....  +++
T Consensus         1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g   80 (371)
T COG0484           1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG   80 (371)
T ss_pred             CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence            45789999999999999999999999999999999998 3 4788999999999999999999999999854421  222


Q ss_pred             cc---------------cCCCCCC--CCCCCCCCCCccccc-----------------cccCcCCCCCccc------ccc
Q 022733          114 TN---------------ASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHH------ASN  153 (293)
Q Consensus       114 ~~---------------~~~~~~~--~~~~gp~r~~difvd-----------------~~~CigC~~C~~~------ap~  153 (293)
                      ..               +|+|.++  ..-..+.++.|+..+                 ..+-..|..|.++      .|.
T Consensus        81 g~g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~  160 (371)
T COG0484          81 GFGFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPK  160 (371)
T ss_pred             CCCcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCC
Confidence            11               1111111  111235566666543                 2234556666655      788


Q ss_pred             eeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC-----
Q 022733          154 TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-----  218 (293)
Q Consensus       154 tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G-----  218 (293)
                      +|..|+|.|..+..++.  +..+++++|+.|.|          .|.|.+.+.+.+.|+|.||+|+.+|++|+..|     
T Consensus       161 tC~tC~G~G~v~~~~~~--g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g  238 (371)
T COG0484         161 TCPTCNGSGQVRTVQRT--GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAG  238 (371)
T ss_pred             cCCCCCCcCeEEEEEee--eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccC
Confidence            99999999999888877  77788999999998          79999999999999999999999999996444     


Q ss_pred             --CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 --WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 --~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                        ++.+||+||...+.....+++..+||+-
T Consensus       239 ~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~  268 (371)
T COG0484         239 PNGGPAGDLYVFVHVKPHPIFERDGDDLYC  268 (371)
T ss_pred             CCCCCCccEEEEEEeecCCCeEECCCceEe
Confidence              3557999999977777667777777765

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=100.00  E-value=5.2e-35  Score=281.67  Aligned_cols=209  Identities=25%  Similarity=0.249  Sum_probs=158.0

Q ss_pred             CCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccccccccccccc-c
Q 022733           34 GERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH-F  112 (293)
Q Consensus        34 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~-~  112 (293)
                      .++.+...|||+||||+++||.+|||+|||+||++||||++++  .++|++|++||++|+||.+|+.||.++.....+ .
T Consensus        21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~--~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~   98 (421)
T PTZ00037         21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD--PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE   98 (421)
T ss_pred             ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch--HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC
Confidence            3555667899999999999999999999999999999999864  589999999999999999999999987532110 0


Q ss_pred             c--------cccCCCCCCCCCCCCCCCCccccc-----------------cccCcCCCCCccc-----ccceeeeeCCcc
Q 022733          113 G--------TNASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHH-----ASNTFVMDEATG  162 (293)
Q Consensus       113 ~--------~~~~~~~~~~~~~gp~r~~difvd-----------------~~~CigC~~C~~~-----ap~tf~~c~g~G  162 (293)
                      +        ..+|++.+  ...++.++.|+.+.                 ...-+.|..|.++     .+.+|..|.|.|
T Consensus        99 ~~~d~~d~f~~~Fggg~--~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G  176 (421)
T PTZ00037         99 QPADASDLFDLIFGGGR--KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQG  176 (421)
T ss_pred             CCcchhhhHHHhhcccc--ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCC
Confidence            0        01122111  01223445555432                 2234556666554     356899999999


Q ss_pred             eEEEEEecCcccceecccccCCCc------------ceeeeeeecccceEEEEeCCCCCCCcEEecCC------CCCCCc
Q 022733          163 CARVKVQYGDSDQNIEVSVDSCPV------------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WERPAN  224 (293)
Q Consensus       163 ~~~v~~q~g~~~~~iq~ac~~Cpg------------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G------~~~~~~  224 (293)
                      ....+++.+++.++++..|+.|.|            .|.|.+++.+.+.|+|.||||+++|++|...|      ++.|||
T Consensus       177 ~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGD  256 (421)
T PTZ00037        177 IRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGN  256 (421)
T ss_pred             eEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCc
Confidence            988888888888889999999977            58888999999999999999999999996444      356889


Q ss_pred             eehhhHHHHHHHHHHhhCCCCC
Q 022733          225 VFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       225 vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      |++.........++++..||+-
T Consensus       257 Liv~I~~~ph~~F~R~G~DL~~  278 (421)
T PTZ00037        257 VVFILNEKPHDTFKREGGDLFI  278 (421)
T ss_pred             EEEEEEecCCCCcEEeCCeEEE
Confidence            9988855554455556667765

>PRK14296 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=9.4e-35  Score=276.74  Aligned_cols=208  Identities=25%  Similarity=0.312  Sum_probs=154.8

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc---c---
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---H---  111 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~---~---  111 (293)
                      +..|||+||||+++||.+|||+|||+||++||||+++++ ++++|++|++||+||+||++|+.||+++.....   +   
T Consensus         2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~   81 (372)
T PRK14296          2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSS   81 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCc
Confidence            357999999999999999999999999999999999754 678999999999999999999999998743110   1   


Q ss_pred             -ccc--c--------cCCCC--CCCCC--------CCCCCCCccccc-----------------cccCcCCCCCccc---
Q 022733          112 -FGT--N--------ASAGF--SRSSW--------KGPPRPEALFVD-----------------ENACIGCRECVHH---  150 (293)
Q Consensus       112 -~~~--~--------~~~~~--~~~~~--------~gp~r~~difvd-----------------~~~CigC~~C~~~---  150 (293)
                       ++.  .        .++++  -|+.+        ..+.++.|+.+.                 ..+.+.|..|.++   
T Consensus        82 ~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~  161 (372)
T PRK14296         82 NFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAE  161 (372)
T ss_pred             CCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccC
Confidence             010  0        00000  01111        123344555432                 2234556666654   


Q ss_pred             ---ccceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecC
Q 022733          151 ---ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGG  217 (293)
Q Consensus       151 ---ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~  217 (293)
                         .+.+|..|.|.|.....++.|++..+++.+|+.|.|          .|.+.+++.+.+.++|.||+|+++|++|...
T Consensus       162 ~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~  241 (372)
T PRK14296        162 SNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLS  241 (372)
T ss_pred             CCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEe
Confidence               356899999999999999999988888999999987          6889999999999999999999999999644


Q ss_pred             C-------CCCCCceehhhHHH-HHHHHHHhhCCCCC
Q 022733          218 G-------WERPANVFMAAKAF-NKQLQQQAAGGSNP  246 (293)
Q Consensus       218 G-------~~~~~~vf~~~~~~-~~~~~~~~~~~~~~  246 (293)
                      |       ++.+||+++..+.. +..|+|+..+|||-
T Consensus       242 g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~  278 (372)
T PRK14296        242 QKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILM  278 (372)
T ss_pred             ccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEE
Confidence            4       24578999888554 45555444567765

>PRK14298 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=6.9e-34  Score=271.26  Aligned_cols=207  Identities=21%  Similarity=0.270  Sum_probs=156.2

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc-c------
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-H------  111 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-~------  111 (293)
                      ..|||+||||+++||.+|||+|||+||++||||++++. ++++|++|++||++|+||.+|..||+++..... +      
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~   83 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI   83 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence            46999999999999999999999999999999999754 567999999999999999999999998743211 0      


Q ss_pred             ccc-----------ccCCCCCCCCCCCCCCCCccccc-----------------cccCcCCCCCcccc------cceeee
Q 022733          112 FGT-----------NASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNTFVM  157 (293)
Q Consensus       112 ~~~-----------~~~~~~~~~~~~gp~r~~difvd-----------------~~~CigC~~C~~~a------p~tf~~  157 (293)
                      |+.           .+|++.+.....++.++.|+.+.                 ....+.|..|.+.+      +.+|..
T Consensus        84 ~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~  163 (377)
T PRK14298         84 FRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPT  163 (377)
T ss_pred             cccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCC
Confidence            110           01111100001224455565533                 23456677776643      478999


Q ss_pred             eCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC-------CC
Q 022733          158 DEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WE  220 (293)
Q Consensus       158 c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G-------~~  220 (293)
                      |.|.|.....++.+.+.++++.+|+.|.|          .|.|.+++.+.+.|+|.||||+++|++|...|       ++
T Consensus       164 C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~  243 (377)
T PRK14298        164 CGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGA  243 (377)
T ss_pred             CCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCC
Confidence            99999988888776677789999999988          68999999999999999999999999996444       24


Q ss_pred             CCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          221 RPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       221 ~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      .+||||+..+......++++.+||+-
T Consensus       244 ~~GDL~i~i~v~~h~~F~R~G~DL~~  269 (377)
T PRK14298        244 PSGDLYIVLHVKEHDYFERVGDDIIS  269 (377)
T ss_pred             CCcCEEEEEEEecCCCeEEEcCcEEE
Confidence            57899998866555555566667665

>PRK14282 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2.8e-33  Score=266.59  Aligned_cols=208  Identities=21%  Similarity=0.168  Sum_probs=154.1

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccccccccccccc-----
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-----  110 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-----  110 (293)
                      ...|||+||||+++||.+|||+|||+|+++||||+++..   ++++|++|++||++|+||.+|..||.++.....     
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~   81 (369)
T PRK14282          2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQE   81 (369)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccccccccc
Confidence            357999999999999999999999999999999998642   567999999999999999999999998743211     


Q ss_pred             -----cc-cc---------------ccCCCCCC--CCCCCCCCCCccccc-----------------cccCcCCCCCccc
Q 022733          111 -----HF-GT---------------NASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHH  150 (293)
Q Consensus       111 -----~~-~~---------------~~~~~~~~--~~~~gp~r~~difvd-----------------~~~CigC~~C~~~  150 (293)
                           ++ +.               .+|++.+.  .....+.++.|+.+.                 ..+.+.|..|.++
T Consensus        82 ~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~  161 (369)
T PRK14282         82 TESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGT  161 (369)
T ss_pred             CCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCcc
Confidence                 00 00               00111000  001123344555432                 2234556666554


Q ss_pred             ------ccceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEE
Q 022733          151 ------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGV  214 (293)
Q Consensus       151 ------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I  214 (293)
                            .+.+|..|+|.|.....++.++...+.+.+|+.|.|          .|.+.+++.+.+.|+|.||||+++|++|
T Consensus       162 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i  241 (369)
T PRK14282        162 GVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVL  241 (369)
T ss_pred             CCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEE
Confidence                  357899999999999888888866777889999987          6899999999999999999999999999


Q ss_pred             ecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          215 FGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       215 ~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ...|       ++.+||||+..+......++++.+|++-
T Consensus       242 ~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~  280 (369)
T PRK14282        242 RITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIY  280 (369)
T ss_pred             EEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEE
Confidence            6444       2456899998865554455566666665

>PRK14288 chaperone protein DnaJ; Provisional

Probab=100.00  E-value=2e-33  Score=267.52  Aligned_cols=203  Identities=20%  Similarity=0.210  Sum_probs=145.8

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccccc-------
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-------  110 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-------  110 (293)
                      ..|||+||||+++||.+|||+|||+||++||||+++.  .++++|++|++||+||+||.+|..||+++.....       
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~   81 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS   81 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence            3699999999999999999999999999999999973  3678999999999999999999999998753211       


Q ss_pred             cccc------cc----CCCCCC-CCCCCCCCCCccccc-----------------cccCcCCCCCcccc-----cceeee
Q 022733          111 HFGT------NA----SAGFSR-SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA-----SNTFVM  157 (293)
Q Consensus       111 ~~~~------~~----~~~~~~-~~~~gp~r~~difvd-----------------~~~CigC~~C~~~a-----p~tf~~  157 (293)
                      +|+.      ..    |++.+. +.-..+.++.++.+.                 ..+...|..|.+++     +.+|..
T Consensus        82 ~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~  161 (369)
T PRK14288         82 DFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQ  161 (369)
T ss_pred             ccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCC
Confidence            1110      00    110000 000112344454432                 12345666666543     578999


Q ss_pred             eCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC------CCC
Q 022733          158 DEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WER  221 (293)
Q Consensus       158 c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G------~~~  221 (293)
                      |.|.|......  |.  .+++.+|+.|.|          .|.+.+++.+.+.|+|.||||+++|++|...|      ++.
T Consensus       162 C~G~G~~~~~~--g~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~  237 (369)
T PRK14288        162 CNGQGQVFMRQ--GF--MSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGK  237 (369)
T ss_pred             CCCCcEEEEEe--ce--EEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCC
Confidence            99999765433  33  356779999988          68899999999999999999999999996554      245


Q ss_pred             CCceehhhHHHHHHHHHHhhCCCCC
Q 022733          222 PANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       222 ~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ||||++..........+++.+||+-
T Consensus       238 ~GDL~v~i~v~~h~~f~R~G~DL~~  262 (369)
T PRK14288        238 RGDLYLEARVKEDEHFKREGCDLFI  262 (369)
T ss_pred             CCCEEEEEEEEECCCcEEeCCEEEE
Confidence            7899998866544445555666654

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.98  E-value=7.5e-33  Score=263.73  Aligned_cols=207  Identities=20%  Similarity=0.238  Sum_probs=152.4

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc-cc---c-
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HF---G-  113 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-~~---~-  113 (293)
                      ..|||+||||+++||.+|||+|||+|+++||||+++.+ ++++|++|++||++|+||.+|+.||+++..... ++   + 
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA   82 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence            46999999999999999999999999999999999743 567999999999999999999999998753211 01   0 


Q ss_pred             ----------cccCCCCCC-CCCCCCCCCCccccc-----------------cccCcCCCCCcccc------cceeeeeC
Q 022733          114 ----------TNASAGFSR-SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNTFVMDE  159 (293)
Q Consensus       114 ----------~~~~~~~~~-~~~~gp~r~~difvd-----------------~~~CigC~~C~~~a------p~tf~~c~  159 (293)
                                ..+|++.+. .....+.++.|+.+.                 ..+-+.|..|.+.+      +.+|..|.
T Consensus        83 ~~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~  162 (371)
T PRK14287         83 GDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCG  162 (371)
T ss_pred             ccccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCC
Confidence                      011221110 000123345555433                 12334566665543      57899999


Q ss_pred             CcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC-------CCCC
Q 022733          160 ATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WERP  222 (293)
Q Consensus       160 g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G-------~~~~  222 (293)
                      |.|.....++.++...+.+..|+.|.|          .|.+.+++.+.+.|+|.||||+++|++|...|       ++.+
T Consensus       163 G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~  242 (371)
T PRK14287        163 GSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPP  242 (371)
T ss_pred             CEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCC
Confidence            999988888888766667889999987          58888888889999999999999999996444       2457


Q ss_pred             CceehhhHHHHHHHHHHhhCCCCC
Q 022733          223 ANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       223 ~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ||+++..+......++++.+|++-
T Consensus       243 GDL~v~i~v~~h~~F~R~G~DL~~  266 (371)
T PRK14287        243 GDLYVVFNVKPHEFFERDGDDIYC  266 (371)
T ss_pred             ccEEEEEEEecCCCEEEecCCeEE
Confidence            899988855444444555666765

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.98  E-value=1.2e-32  Score=263.20  Aligned_cols=207  Identities=24%  Similarity=0.276  Sum_probs=153.7

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc-cccc---
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HFGT---  114 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-~~~~---  114 (293)
                      ..|||+||||+++||.+|||+|||+|+++||||++++. ++++|++|++||++|+||.+|..||+++..... +++.   
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~   82 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG   82 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence            47999999999999999999999999999999999754 668999999999999999999999998753211 0000   


Q ss_pred             -------------------ccCCCCCC-CCCCCCCCCCccccc-----------------cccCcCCCCCcccc------
Q 022733          115 -------------------NASAGFSR-SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------  151 (293)
Q Consensus       115 -------------------~~~~~~~~-~~~~gp~r~~difvd-----------------~~~CigC~~C~~~a------  151 (293)
                                         .+|++.+. .....+.++.|+.+.                 ...-+.|..|.+.+      
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~  162 (380)
T PRK14276         83 GFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTS  162 (380)
T ss_pred             CCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCC
Confidence                               01111000 000122344555432                 12345666666543      


Q ss_pred             cceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC---
Q 022733          152 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG---  218 (293)
Q Consensus       152 p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G---  218 (293)
                      +.+|..|.|.|.....++.++...+.+.+|+.|.|          .|.|.+++.+.+.++|.||+|+++|++|...|   
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~  242 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGE  242 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEecccc
Confidence            56899999999998888888766667889999988          58999999999999999999999999996444   


Q ss_pred             ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 ----WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 ----~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                          ++.+|||++..++.....++++.+||+-
T Consensus       243 ~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  274 (380)
T PRK14276        243 AGFNGGPYGDLYVVFRVEPSKKFERDGSTIYY  274 (380)
T ss_pred             CCCCCCCCcCEEEEEEEEECcceeeecceEEE
Confidence                2356899998866555555556666664

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.1e-32  Score=262.99  Aligned_cols=207  Identities=24%  Similarity=0.286  Sum_probs=155.0

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc-cc-----
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HF-----  112 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-~~-----  112 (293)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++++ ++++|++|++||++|+||.+|..||+++..... ++     
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~   82 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF   82 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence            46999999999999999999999999999999998754 678999999999999999999999998753211 01     


Q ss_pred             cc--------------ccCCCCCCC-CCCCCCCCCccccc-----------------cccCcCCCCCcccc------cce
Q 022733          113 GT--------------NASAGFSRS-SWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNT  154 (293)
Q Consensus       113 ~~--------------~~~~~~~~~-~~~gp~r~~difvd-----------------~~~CigC~~C~~~a------p~t  154 (293)
                      +.              .+|++.+.. ....+.++.|+.+.                 ..+-+.|..|.+++      +.+
T Consensus        83 ~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~  162 (376)
T PRK14280         83 GGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKET  162 (376)
T ss_pred             CCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCcc
Confidence            00              011110000 00122345555533                 12345666666643      578


Q ss_pred             eeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC------
Q 022733          155 FVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------  218 (293)
Q Consensus       155 f~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G------  218 (293)
                      |..|+|.|.....++.++...+++.+|+.|.|          .|.|.+.+.+.+.++|.||+|+++|++|...|      
T Consensus       163 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~  242 (376)
T PRK14280        163 CSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGV  242 (376)
T ss_pred             CCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCC
Confidence            99999999988888887766667889999988          58999999999999999999999999996554      


Q ss_pred             -CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 -WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 -~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                       .+.+||+++..+......++++.+|||-
T Consensus       243 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  271 (376)
T PRK14280        243 NGGPAGDLYVVFRVRPHEFFERDGDDIYC  271 (376)
T ss_pred             CCCCCcCEEEEEEEecCCCeEEecCCEEE
Confidence             2356899998866655556666767765

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=2.6e-32  Score=260.58  Aligned_cols=206  Identities=18%  Similarity=0.212  Sum_probs=151.8

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc------ccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------HFG  113 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~------~~~  113 (293)
                      .|||+||||+++||.+|||+|||+|+++||||+++++ ++++|++|++||++|+||.+|..||.++.....      +++
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~   82 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG   82 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence            6999999999999999999999999999999999754 567999999999999999999999998743110      111


Q ss_pred             c----------ccCCCCCCC-C-CCCCCCCCccccc-----------------cccCcCCCCCccc------ccceeeee
Q 022733          114 T----------NASAGFSRS-S-WKGPPRPEALFVD-----------------ENACIGCRECVHH------ASNTFVMD  158 (293)
Q Consensus       114 ~----------~~~~~~~~~-~-~~gp~r~~difvd-----------------~~~CigC~~C~~~------ap~tf~~c  158 (293)
                      .          .+|++.+.. . ...+.++.|+.+.                 ...-..|..|.++      .+.+|..|
T Consensus        83 ~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C  162 (378)
T PRK14278         83 GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTC  162 (378)
T ss_pred             cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCc
Confidence            0          111111100 0 0122345555533                 1234556666654      35689999


Q ss_pred             CCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC-------CCC
Q 022733          159 EATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-------WER  221 (293)
Q Consensus       159 ~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G-------~~~  221 (293)
                      .|.|.....++.++...+++.+|+.|.|          .|.|.+++.+.+.|+|.||||+++|++|...|       ++.
T Consensus       163 ~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~  242 (378)
T PRK14278        163 GGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGP  242 (378)
T ss_pred             cCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCC
Confidence            9999888777776666667889999987          68999999999999999999999999996554       245


Q ss_pred             CCceehhhHHHHHHHHHHhhCCCCC
Q 022733          222 PANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       222 ~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      +||+++..+......++++.+|++-
T Consensus       243 ~GDL~v~i~~~~h~~F~R~G~DL~~  267 (378)
T PRK14278        243 AGDLYVEVHEQPHDVFVRDGDDLHC  267 (378)
T ss_pred             CCCEEEEEEECcCCCEEEcCCCEEE
Confidence            6899998865554455556666654

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=3.6e-32  Score=259.91  Aligned_cols=207  Identities=23%  Similarity=0.260  Sum_probs=153.6

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccc-------
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-------  110 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-------  110 (293)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++..  ++++|++|++||++|+||.+|..||+++.....       
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~   82 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS   82 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence            46999999999999999999999999999999999743  668999999999999999999999998753211       


Q ss_pred             -cccc--------------ccCCCC-CCC--CCCCCCCCCccccc-----------------cccCcCCCCCccc-----
Q 022733          111 -HFGT--------------NASAGF-SRS--SWKGPPRPEALFVD-----------------ENACIGCRECVHH-----  150 (293)
Q Consensus       111 -~~~~--------------~~~~~~-~~~--~~~gp~r~~difvd-----------------~~~CigC~~C~~~-----  150 (293)
                       +++.              .+|++. +..  ....+.++.|+.+.                 ..+-..|..|.+.     
T Consensus        83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~  162 (380)
T PRK14297         83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPG  162 (380)
T ss_pred             CCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCC
Confidence             1100              011110 000  00123345555433                 1234456666554     


Q ss_pred             -ccceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC-
Q 022733          151 -ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-  218 (293)
Q Consensus       151 -ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G-  218 (293)
                       .+.+|..|.|.|.....++.++...+++..|+.|.|          .|.+.+.+.+.+.++|.||||+++|++|...| 
T Consensus       163 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~  242 (380)
T PRK14297        163 TSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQ  242 (380)
T ss_pred             CcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecC
Confidence             356899999999988888888777778899999988          58888888899999999999999999996444 


Q ss_pred             ------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 ------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 ------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                            ++.++|+|+..+......++++..||+-
T Consensus       243 G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~  276 (380)
T PRK14297        243 GEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYI  276 (380)
T ss_pred             ccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEE
Confidence                  2347899998866555555556666664

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.7e-32  Score=250.11  Aligned_cols=205  Identities=25%  Similarity=0.338  Sum_probs=152.5

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccccccccccccc--ccc--
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH--FGT--  114 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~--~~~--  114 (293)
                      .+..||+||||+++||.+|||+|||+|+++||||+|++ +.++|++|++||+||+||++|..||+++......  ++.  
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~   80 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF   80 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence            35789999999999999999999999999999999987 7789999999999999999999999998654321  111  


Q ss_pred             ----ccCCCCCCCCCCCCCCCCccccc-----------------cccCcCCCCCccccc-----ceeeeeCCcceEEEEE
Q 022733          115 ----NASAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHAS-----NTFVMDEATGCARVKV  168 (293)
Q Consensus       115 ----~~~~~~~~~~~~gp~r~~difvd-----------------~~~CigC~~C~~~ap-----~tf~~c~g~G~~~v~~  168 (293)
                          .+|+ +++...+++.++.++-.+                 ...-.-|..|.+..+     ..|..|.+.|....++
T Consensus        81 ~~f~~~F~-~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~  159 (337)
T KOG0712|consen   81 GGFSQFFG-FGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTR  159 (337)
T ss_pred             ccHHHhcc-CCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEE
Confidence                1111 222222333344444322                 223445666655433     2599999999999999


Q ss_pred             ecCc-ccceecccccCCCc------------ceeeeeeecccceEEEEeCCCCCCCcEEe--cCCCC----CCCceehhh
Q 022733          169 QYGD-SDQNIEVSVDSCPV------------NCIHWVDREELPVLEFLIQPQPKKGYGVF--GGGWE----RPANVFMAA  229 (293)
Q Consensus       169 q~g~-~~~~iq~ac~~Cpg------------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~--g~G~~----~~~~vf~~~  229 (293)
                      ++++ +.++++..|..|.|            .|++.+++++.++|+|.|++|++++++|.  +.+.+    -|+|+.+..
T Consensus       160 ~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i  239 (337)
T KOG0712|consen  160 QMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLI  239 (337)
T ss_pred             eccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEe
Confidence            9999 99999999999988            69999999999999999999999999984  44432    256655555


Q ss_pred             HHH-HHHHHHHhhCCCCC
Q 022733          230 KAF-NKQLQQQAAGGSNP  246 (293)
Q Consensus       230 ~~~-~~~~~~~~~~~~~~  246 (293)
                      ... +..|.|+ .+||..
T Consensus       240 ~~k~h~~F~Rr-g~dL~~  256 (337)
T KOG0712|consen  240 DQKEHPGFDRR-GSDLYR  256 (337)
T ss_pred             cccccccceec-ccccce
Confidence            333 4444444 433433

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=6.9e-32  Score=258.69  Aligned_cols=204  Identities=21%  Similarity=0.283  Sum_probs=146.5

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhccccccccccccccc----c--c-
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ----M--R-  109 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~----~--~-  109 (293)
                      ..+|||+||||+++|+.+|||+|||+|+++||||+++..  +.++|++|++||+||+||++|+.||+++..    .  . 
T Consensus         7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~   86 (392)
T PRK14279          7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR   86 (392)
T ss_pred             cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence            357999999999999999999999999999999999743  678999999999999999999999998631    0  0 


Q ss_pred             -----ccccc-------------ccCC--------C--CCCCCC----------CCCCCCCccccc--------------
Q 022733          110 -----FHFGT-------------NASA--------G--FSRSSW----------KGPPRPEALFVD--------------  137 (293)
Q Consensus       110 -----~~~~~-------------~~~~--------~--~~~~~~----------~gp~r~~difvd--------------  137 (293)
                           .+++.             ..|+        +  .-|+.+          ..+.++.|+.+.              
T Consensus        87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~  166 (392)
T PRK14279         87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTM  166 (392)
T ss_pred             cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEE
Confidence                 00000             0000        0  000110          112344555433              


Q ss_pred             ---cccCcCCCCCcccc------cceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccc
Q 022733          138 ---ENACIGCRECVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELP  198 (293)
Q Consensus       138 ---~~~CigC~~C~~~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k  198 (293)
                         ..+-+.|..|.+++      +.+|..|+|.|......  +.+  +++.+|+.|.|          .|.+.+++.+.+
T Consensus       167 ~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~  242 (392)
T PRK14279        167 PLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--GAF--GFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTR  242 (392)
T ss_pred             EEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--cce--EEEEecCCCCceeEEeCCcCCCCCCCeEEEEee
Confidence               22345666666543      56899999999765443  433  57799999988          689999999999


Q ss_pred             eEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          199 VLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      .++|.||||+++|++|...|       ++.+|||++..+......++++.+|++-
T Consensus       243 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~  297 (392)
T PRK14279        243 TINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTV  297 (392)
T ss_pred             eeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEE
Confidence            99999999999999996554       2346899998866555555566666664

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.3e-31  Score=256.23  Aligned_cols=203  Identities=25%  Similarity=0.331  Sum_probs=146.4

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc--------
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--------  110 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~--------  110 (293)
                      ..|||+||||+++||.+|||+|||+|+++||||+++++ ++++|++|++||++|+||.+|..||.++.....        
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~   81 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG   81 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence            36999999999999999999999999999999999754 568999999999999999999999998743210        


Q ss_pred             --cccc-----------cc---CC-CCCCCC----------CCCCCCCCccccc-----------------cccCcCCCC
Q 022733          111 --HFGT-----------NA---SA-GFSRSS----------WKGPPRPEALFVD-----------------ENACIGCRE  146 (293)
Q Consensus       111 --~~~~-----------~~---~~-~~~~~~----------~~gp~r~~difvd-----------------~~~CigC~~  146 (293)
                        +++.           .+   |+ +..+..          ...+.++.|+.+.                 ...-+.|..
T Consensus        82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~  161 (382)
T PRK14291         82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA  161 (382)
T ss_pred             ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence              1100           00   00 000000          0112345555433                 123455666


Q ss_pred             Ccccc------cceeeeeCCcceEEEEEecCcccceecccccCCCc---------ceeeeeeecccceEEEEeCCCCCCC
Q 022733          147 CVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV---------NCIHWVDREELPVLEFLIQPQPKKG  211 (293)
Q Consensus       147 C~~~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg---------~Cig~~~~~e~k~LeV~Ip~G~~~G  211 (293)
                      |.+.+      +.+|..|.|.|.....  .  +..+++.+|+.|.|         .|.+.+++.+.+.|+|.||||+++|
T Consensus       162 C~G~G~~~~~~~~~C~~C~G~G~~~~~--~--g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G  237 (382)
T PRK14291        162 CGGTGYDPGSGEKVCPTCGGSGEIYQR--G--GFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPGVDNG  237 (382)
T ss_pred             CccccCCCCCCCccCCCCCCceEEEEe--c--ceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCCCCCC
Confidence            66543      6689999999865544  2  34567889999987         6889999999999999999999999


Q ss_pred             cEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          212 YGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       212 ~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ++|...|       ++.|||||+..+......++++.+|++-
T Consensus       238 ~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~  279 (382)
T PRK14291        238 SKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYL  279 (382)
T ss_pred             CEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEE
Confidence            9996444       2468899998865554455556656654

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=6.8e-32  Score=257.24  Aligned_cols=204  Identities=25%  Similarity=0.319  Sum_probs=148.1

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccccc----cc
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF----HF  112 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~----~~  112 (293)
                      ...|||+||||+++||.+|||+|||+|+++||||+++.  .++++|++|++||+||+||.+|..||+++.....    ++
T Consensus         2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~   81 (372)
T PRK14286          2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGF   81 (372)
T ss_pred             CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCC
Confidence            35799999999999999999999999999999999974  3678999999999999999999999998743210    00


Q ss_pred             cc------------------ccCCCCC-C----CCCCCCCCCCccccc-----------------cccCcCCCCCcccc-
Q 022733          113 GT------------------NASAGFS-R----SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA-  151 (293)
Q Consensus       113 ~~------------------~~~~~~~-~----~~~~gp~r~~difvd-----------------~~~CigC~~C~~~a-  151 (293)
                      +.                  .+|++.+ .    .....+.++.|+.+.                 ..+-+.|..|.+++ 
T Consensus        82 ~~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~  161 (372)
T PRK14286         82 GQGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGA  161 (372)
T ss_pred             CCCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCc
Confidence            00                  0111110 0    000123345565533                 12345566666543 


Q ss_pred             -----cceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEec
Q 022733          152 -----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFG  216 (293)
Q Consensus       152 -----p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g  216 (293)
                           +.+|..|.|.|.....  .|.+  +++..|+.|.|          .|.+.+++.+.+.|+|.||||+++|++|..
T Consensus       162 ~~~~~~~~C~~C~G~G~v~~~--~G~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~  237 (372)
T PRK14286        162 SKGSSPTTCPDCGGSGQIRRT--QGFF--SVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKV  237 (372)
T ss_pred             CCCCCCccCCCCcCeEEEEEE--eceE--EEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEE
Confidence                 5689999999976544  2433  57789999988          599999999999999999999999999965


Q ss_pred             CC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          217 GG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       217 ~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      .|       ++.+||+|+..+......++++.+|++-
T Consensus       238 ~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~  274 (372)
T PRK14286        238 SGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLIL  274 (372)
T ss_pred             CCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEE
Confidence            54       2346899998866555555566666665

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=1.3e-31  Score=256.42  Aligned_cols=207  Identities=24%  Similarity=0.290  Sum_probs=152.3

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccc--ccc--
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFG--  113 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~--~~~--  113 (293)
                      ..|||+||||+++||.+|||+|||+|+++||||+++..  ++++|++|++||++|+||.+|..||.++.....  +++  
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~   83 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG   83 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence            46999999999999999999999999999999999743  567999999999999999999999998743210  000  


Q ss_pred             ----cc-------------------cCCCC-CC-CC--CCCCCCCCccccc-----------------cccCcCCCCCcc
Q 022733          114 ----TN-------------------ASAGF-SR-SS--WKGPPRPEALFVD-----------------ENACIGCRECVH  149 (293)
Q Consensus       114 ----~~-------------------~~~~~-~~-~~--~~gp~r~~difvd-----------------~~~CigC~~C~~  149 (293)
                          .+                   +|++. +. ..  ..++.++.|+.+.                 ..+-+.|..|.+
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G  163 (386)
T PRK14277         84 GFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKG  163 (386)
T ss_pred             CcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCC
Confidence                00                   01100 00 00  0123345555432                 123445555654


Q ss_pred             c------ccceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcE
Q 022733          150 H------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYG  213 (293)
Q Consensus       150 ~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~  213 (293)
                      .      .+.+|..|.|.|.....++.++...+.+.+|+.|.|          .|.+.+++.+.+.|+|.||||+++|++
T Consensus       164 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~  243 (386)
T PRK14277        164 SGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQM  243 (386)
T ss_pred             CCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCcE
Confidence            3      367899999999988888888766666789999988          689999999999999999999999999


Q ss_pred             EecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          214 VFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       214 I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      |...|       ++.+||+|+..+......++++.+||+-
T Consensus       244 i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  283 (386)
T PRK14277        244 ITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYL  283 (386)
T ss_pred             EEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEE
Confidence            96554       2346899998866555555566666665

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=9.8e-32  Score=255.54  Aligned_cols=202  Identities=20%  Similarity=0.253  Sum_probs=145.9

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccc---c---c
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---H---F  112 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~---~---~  112 (293)
                      .|||+||||+++||.+|||+|||+|+++||||+++..  +.++|++|++||++|+||.+|..||.++.....   +   +
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~   82 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGF   82 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCcccc
Confidence            6999999999999999999999999999999999743  568999999999999999999999998743210   0   0


Q ss_pred             ccc-----------------cCCCCCCC-CCCCCCCCCccccc-----------------cccCcCCCCCcccc------
Q 022733          113 GTN-----------------ASAGFSRS-SWKGPPRPEALFVD-----------------ENACIGCRECVHHA------  151 (293)
Q Consensus       113 ~~~-----------------~~~~~~~~-~~~gp~r~~difvd-----------------~~~CigC~~C~~~a------  151 (293)
                      ..+                 +|++.+.. .-..+.++.|+.+.                 ..+-+.|..|.+++      
T Consensus        83 ~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~  162 (365)
T PRK14285         83 SGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTS  162 (365)
T ss_pred             CCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCC
Confidence            000                 11110000 00113345555533                 12345666666653      


Q ss_pred             cceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC---
Q 022733          152 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG---  218 (293)
Q Consensus       152 p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G---  218 (293)
                      +.+|..|.|.|....  ..|.  .+++..|+.|.|          .|.+.+++.+.+.++|.||||+.+|++|...|   
T Consensus       163 ~~~C~~C~G~G~~~~--~~G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~  238 (365)
T PRK14285        163 PSICNMCNGSGRVMQ--GGGF--FRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGS  238 (365)
T ss_pred             CccCCCccCceeEEe--cCce--eEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccc
Confidence            568999999986543  2332  378999999988          68999999999999999999999999996444   


Q ss_pred             ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 ----WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 ----~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                          ++.|||+|+..+.......+++..||+.
T Consensus       239 ~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~  270 (365)
T PRK14285        239 VNPDNQQYGDLYIKILIKPHKIFKRNGKDLYA  270 (365)
T ss_pred             cCCCCCCCCCEEEEEEEecCCCeEEeccceEE
Confidence                2457899988865554455556666665

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=2.3e-31  Score=253.28  Aligned_cols=204  Identities=24%  Similarity=0.261  Sum_probs=147.0

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccc--cccc
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--HFGT  114 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~--~~~~  114 (293)
                      ...|||+||||+++||.+|||+|||+|+++||||+++..  ++++|++|++||+||+||.+|..||+++.....  +++.
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~   81 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSG   81 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCC
Confidence            457999999999999999999999999999999999743  568999999999999999999999998753211  1100


Q ss_pred             --c--------------cCC-CCCC--CCCCCCCCCCccccc-----------------cccCcCCCCCcccc------c
Q 022733          115 --N--------------ASA-GFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------S  152 (293)
Q Consensus       115 --~--------------~~~-~~~~--~~~~gp~r~~difvd-----------------~~~CigC~~C~~~a------p  152 (293)
                        +              +|+ +.+.  .....+.++.|+.+.                 ...-..|..|.+.+      +
T Consensus        82 ~~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~  161 (366)
T PRK14294         82 FSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSP  161 (366)
T ss_pred             cCccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCc
Confidence              0              111 0000  001123344555432                 22344566665543      5


Q ss_pred             ceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC----
Q 022733          153 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG----  218 (293)
Q Consensus       153 ~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G----  218 (293)
                      .+|..|.|.|....  +.|.+  +++..|+.|.|          .|.|.+++.+.+.++|.||||+++|++|...|    
T Consensus       162 ~~C~~C~G~G~~~~--~~G~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~  237 (366)
T PRK14294        162 TTCPQCGGSGQVTQ--SQGFF--SIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEA  237 (366)
T ss_pred             ccCCCcCCeEEEEE--EeeeE--EEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccC
Confidence            68999999886543  33433  57899999988          68999999999999999999999999996544    


Q ss_pred             ---CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 ---WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 ---~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                         ++.+||+++..+......++++..|++-
T Consensus       238 ~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~  268 (366)
T PRK14294        238 GVRGGPPGDLYVFLTVEPHEFFERDGNDVHC  268 (366)
T ss_pred             CCCCCCCCcEEEEEEEccCCcceecCCCEEE
Confidence               2457899888866555555566667765

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=2.9e-31  Score=254.52  Aligned_cols=202  Identities=20%  Similarity=0.249  Sum_probs=144.5

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhccccccccccccccccc---------
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR---------  109 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~---------  109 (293)
                      .|||+||||+++||.+|||+|||+|+++||||++++.  ++++|++|++||++|+||.+|+.||+++....         
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~   80 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG   80 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence            4899999999999999999999999999999999753  66799999999999999999999999874311         


Q ss_pred             ccccc------------------------ccCCCCC--CCCC---CCCCCCCccccc-----------------cccCcC
Q 022733          110 FHFGT------------------------NASAGFS--RSSW---KGPPRPEALFVD-----------------ENACIG  143 (293)
Q Consensus       110 ~~~~~------------------------~~~~~~~--~~~~---~gp~r~~difvd-----------------~~~Cig  143 (293)
                      .+++.                        .+|++.+  ++..   ..+.++.++.+.                 ...-+.
T Consensus        81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~  160 (391)
T PRK14284         81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS  160 (391)
T ss_pred             CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence            01100                        0011100  0000   112344454432                 123445


Q ss_pred             CCCCccc------ccceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCC
Q 022733          144 CRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQ  207 (293)
Q Consensus       144 C~~C~~~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G  207 (293)
                      |..|.++      .+.+|..|.|.|......  |.  .+++..|+.|.|          .|.+.+++.+.+.|+|.||||
T Consensus       161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G  236 (391)
T PRK14284        161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSR--GF--FSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAG  236 (391)
T ss_pred             CCCCcccccCCCCCCeecCccCCeeEEEEEe--ce--EEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCC
Confidence            6666543      356899999998765433  43  357789999988          689999999999999999999


Q ss_pred             CCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          208 PKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       208 ~~~G~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      +++|++|...|       ++.||||++..+......++++.+||+-
T Consensus       237 ~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  282 (391)
T PRK14284        237 VDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLIL  282 (391)
T ss_pred             CCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEE
Confidence            99999996444       3567899998866554455555656654

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.97  E-value=3.6e-31  Score=251.03  Aligned_cols=205  Identities=26%  Similarity=0.302  Sum_probs=152.5

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc--------cc
Q 022733           42 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--------HF  112 (293)
Q Consensus        42 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~--------~~  112 (293)
                      |||+||||+++|+.+|||+|||+|+++||||+++.. +.++|++|++||++|+||.+|..||.++.....        ++
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~   80 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF   80 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence            799999999999999999999999999999999743 668999999999999999999999998743211        01


Q ss_pred             cc--------------ccCCCC-CCCC--CCCCCCCCccccc-----------------cccCcCCCCCcccc------c
Q 022733          113 GT--------------NASAGF-SRSS--WKGPPRPEALFVD-----------------ENACIGCRECVHHA------S  152 (293)
Q Consensus       113 ~~--------------~~~~~~-~~~~--~~gp~r~~difvd-----------------~~~CigC~~C~~~a------p  152 (293)
                      .+              .+|++. +...  ...+.++.|+.+.                 ..+-+.|..|.+.+      +
T Consensus        81 ~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~  160 (354)
T TIGR02349        81 NGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDP  160 (354)
T ss_pred             CCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCC
Confidence            00              011110 0000  0123344555433                 22445677776654      5


Q ss_pred             ceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC--C-
Q 022733          153 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG--W-  219 (293)
Q Consensus       153 ~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G--~-  219 (293)
                      .+|..|.|.|.....++.+++..+.+..|+.|.|          .|.+.+++.+.+.|+|.||||+++|++|...|  . 
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~  240 (354)
T TIGR02349       161 KTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNA  240 (354)
T ss_pred             ccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccC
Confidence            6899999999998888888866667889999988          68999999999999999999999999996444  2 


Q ss_pred             ----CCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          220 ----ERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       220 ----~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                          +.+||+++..+.......+++.+|++-
T Consensus       241 ~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~  271 (354)
T TIGR02349       241 GENGGPNGDLYVVIRVKPHKIFERDGNDLYI  271 (354)
T ss_pred             CCCCCCCCCEEEEEEEecCcceEEecCCEEE
Confidence                346899998855554455555656665

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=4.2e-31  Score=252.45  Aligned_cols=208  Identities=24%  Similarity=0.327  Sum_probs=152.9

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC-chHHHHHHHHHHHHhhccccccccccccccccccccc----
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFG----  113 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~-~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~----  113 (293)
                      ...|||+||||+++||.+|||+|||+|+++||||++++ .++++|++|++||++|+||.+|..||+++.....+++    
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~   82 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI   82 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence            35799999999999999999999999999999999974 3678999999999999999999999998743211100    


Q ss_pred             ----------cccCCCC--CCCCC-------CCCCCCCcccccc-----------------ccCcCCCCCccc------c
Q 022733          114 ----------TNASAGF--SRSSW-------KGPPRPEALFVDE-----------------NACIGCRECVHH------A  151 (293)
Q Consensus       114 ----------~~~~~~~--~~~~~-------~gp~r~~difvd~-----------------~~CigC~~C~~~------a  151 (293)
                                .+++++.  .++.|       .++.++.++.++.                 ..-..|..|.+.      .
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~  162 (378)
T PRK14283         83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSE  162 (378)
T ss_pred             ccccCccccccccccchhhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCC
Confidence                      0000000  01111       1234555655431                 123445555543      4


Q ss_pred             cceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC---
Q 022733          152 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG---  218 (293)
Q Consensus       152 p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G---  218 (293)
                      +..|..|.|.|.....++.++...+.+..|+.|.|          .|.+.+.+.+.+.++|.||||+++|++|...|   
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~  242 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGE  242 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEecccc
Confidence            56899999999998888887755566789999988          68999999999999999999999999996544   


Q ss_pred             ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 ----WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 ----~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                          .+.+||+++..+......++++.+|++-
T Consensus       243 ~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~  274 (378)
T PRK14283        243 MGDRGGEPGDLYVVIKVKPHKIFRREGANLYY  274 (378)
T ss_pred             CCCCCCCCccEEEEEEEEcCCCEEEecCCEEE
Confidence                2457899998866555555556666654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=5.1e-31  Score=251.33  Aligned_cols=203  Identities=23%  Similarity=0.276  Sum_probs=147.1

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccc------c
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------H  111 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~------~  111 (293)
                      ..|||+||||+++||.+|||+|||+|+++||||+++..  ++++|++|++||+||+||.+|..||.++.....      +
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g   82 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG   82 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence            47999999999999999999999999999999999753  567999999999999999999999998753211      1


Q ss_pred             ccc-------------ccCCCCCC--CCCCCCCCCCccccc-----------------cccCcCCCCCcccc------cc
Q 022733          112 FGT-------------NASAGFSR--SSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SN  153 (293)
Q Consensus       112 ~~~-------------~~~~~~~~--~~~~gp~r~~difvd-----------------~~~CigC~~C~~~a------p~  153 (293)
                      |..             .+|++.+.  ..-..+.++.|+.+.                 ..+.+.|..|.+.+      +.
T Consensus        83 ~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~  162 (373)
T PRK14301         83 FSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPE  162 (373)
T ss_pred             cccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCc
Confidence            100             00110000  001123345555533                 22345666666543      56


Q ss_pred             eeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC-----
Q 022733          154 TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-----  218 (293)
Q Consensus       154 tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G-----  218 (293)
                      +|..|.|.|....  +.|.  .+++..|+.|.|          .|.|.+++.+.+.++|.||||+++|++|...|     
T Consensus       163 ~C~~C~G~G~v~~--~~G~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~  238 (373)
T PRK14301        163 TCRHCGGSGQVRQ--SQGF--FQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPG  238 (373)
T ss_pred             ccCCccCeeEEEE--Eeee--EEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCC
Confidence            8999999987653  3343  456899999987          68999999999999999999999999996444     


Q ss_pred             --CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 --WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 --~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                        ++.+||+++..+.......+++.+|++-
T Consensus       239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~  268 (373)
T PRK14301        239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVV  268 (373)
T ss_pred             CCCCCCcCEEEEEEEEECCCceeecCcEEE
Confidence              2456899998866555555566667654

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=3.7e-31  Score=251.70  Aligned_cols=206  Identities=21%  Similarity=0.255  Sum_probs=151.9

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhccccccccccccccccc----cccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR----FHFG  113 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~----~~~~  113 (293)
                      .|||+||||+++||.+|||+|||+|+++||||+++..   +.++|++|++||++|+||.+|..||.++....    .+++
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~   82 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN   82 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence            6999999999999999999999999999999998753   56799999999999999999999999875311    0111


Q ss_pred             c--------------ccCCCC-CC---CCC-CCC---CCCCccccc-----------------cccCcCCCCCcccc---
Q 022733          114 T--------------NASAGF-SR---SSW-KGP---PRPEALFVD-----------------ENACIGCRECVHHA---  151 (293)
Q Consensus       114 ~--------------~~~~~~-~~---~~~-~gp---~r~~difvd-----------------~~~CigC~~C~~~a---  151 (293)
                      .              .+|++. +.   +.+ ..+   .++.|+...                 ..+...|..|.+.+   
T Consensus        83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~  162 (365)
T PRK14290         83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN  162 (365)
T ss_pred             ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence            0              011110 00   000 001   113454432                 22345555665543   


Q ss_pred             --cceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC-
Q 022733          152 --SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG-  218 (293)
Q Consensus       152 --p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G-  218 (293)
                        +.+|..|.|.|.....++.|.+.++++..|+.|.|          .|.+.+++.+.+.|+|.||||+++|++|...| 
T Consensus       163 ~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~  242 (365)
T PRK14290        163 GKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGK  242 (365)
T ss_pred             CCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccc
Confidence              46899999999888777777777778899999987          68999999999999999999999999997555 


Q ss_pred             ----CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 ----WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 ----~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                          ++.||||++..++.....++++..|++-
T Consensus       243 G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~  274 (365)
T PRK14290        243 GQSYGGRTGDLYVVLRVNNDPNIQRINDDLYV  274 (365)
T ss_pred             cCCCCCCCCCEEEEEEEcCCCCEEEecCCEEE
Confidence                3468999998866555555566666654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=4.8e-31  Score=251.53  Aligned_cols=204  Identities=24%  Similarity=0.308  Sum_probs=146.1

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccc------
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------  110 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~------  110 (293)
                      ...|||+||||+++||.+|||+|||+|+++||||+++..  ++++|++|++||++|+||.+|..||.++.....      
T Consensus         2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~   81 (371)
T PRK10767          2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGG   81 (371)
T ss_pred             CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCC
Confidence            346999999999999999999999999999999998743  567999999999999999999999998743211      


Q ss_pred             cccc--c-------c----CCCCCCCCCCCCCCCCccccc-----------------cccCcCCCCCcccc------cce
Q 022733          111 HFGT--N-------A----SAGFSRSSWKGPPRPEALFVD-----------------ENACIGCRECVHHA------SNT  154 (293)
Q Consensus       111 ~~~~--~-------~----~~~~~~~~~~gp~r~~difvd-----------------~~~CigC~~C~~~a------p~t  154 (293)
                      +++.  +       .    |++.+......+.++.|+.+.                 ....+.|..|.+.+      +.+
T Consensus        82 ~~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~  161 (371)
T PRK10767         82 GFGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKT  161 (371)
T ss_pred             CCCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCcc
Confidence            1110  0       0    110000000123455555432                 22455666776653      458


Q ss_pred             eeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC------
Q 022733          155 FVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------  218 (293)
Q Consensus       155 f~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G------  218 (293)
                      |..|.|.|.....+  |..  +++.+|+.|.|          .|.|.+++.+.+.++|.||||+++|++|...|      
T Consensus       162 C~~C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~  237 (371)
T PRK10767        162 CPTCHGAGQVRMQQ--GFF--TVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGE  237 (371)
T ss_pred             CCCCCCeeEEEEee--ceE--EEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCC
Confidence            99999999755443  432  47789999988          58899999999999999999999999996444      


Q ss_pred             -CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 -WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 -~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                       ++.+||+|+..+......++++.+|++.
T Consensus       238 ~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  266 (371)
T PRK10767        238 RGGPAGDLYVQIHVKEHPIFERDGNDLYC  266 (371)
T ss_pred             CCCCCcCEEEEEEEeeCCCEEEecCCEEE
Confidence             2357899988855444445555656654

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.97  E-value=9.7e-31  Score=251.24  Aligned_cols=206  Identities=24%  Similarity=0.277  Sum_probs=150.2

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccc--------
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF--------  110 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~--------  110 (293)
                      .|||+||||+++|+.+|||+|||+|+++||||+++..  ++++|++|++||++|+||.+|..||.++.....        
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~   82 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG   82 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence            6999999999999999999999999999999999753  568999999999999999999999998743110        


Q ss_pred             -cccc-------------ccCCCCC---------------CCCC----CCCCCCCccccc-----------------ccc
Q 022733          111 -HFGT-------------NASAGFS---------------RSSW----KGPPRPEALFVD-----------------ENA  140 (293)
Q Consensus       111 -~~~~-------------~~~~~~~---------------~~~~----~gp~r~~difvd-----------------~~~  140 (293)
                       +++.             .+|++.+               ....    ..+.++.|+.+.                 ..+
T Consensus        83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r  162 (397)
T PRK14281         83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK  162 (397)
T ss_pred             CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence             0100             1122100               0000    011234455433                 112


Q ss_pred             CcCCCCCccc-----ccceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeC
Q 022733          141 CIGCRECVHH-----ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQ  205 (293)
Q Consensus       141 CigC~~C~~~-----ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip  205 (293)
                      -+.|..|.+.     .+.+|..|.|.|......+.++...+.+.+|+.|.|          .|.|.+++.+.+.|+|.||
T Consensus       163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip  242 (397)
T PRK14281        163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVP  242 (397)
T ss_pred             eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecC
Confidence            3344444443     356899999999888777777766666889999988          6899999999999999999


Q ss_pred             CCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          206 PQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       206 ~G~~~G~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ||+++|++|...|       ++.+||+++..+......++++.+||+-
T Consensus       243 ~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~  290 (397)
T PRK14281        243 AGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIY  290 (397)
T ss_pred             CCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEE
Confidence            9999999996544       2467899998866555555566666665

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=2.9e-30  Score=247.36  Aligned_cols=208  Identities=23%  Similarity=0.199  Sum_probs=152.0

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccc------
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF------  110 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~------  110 (293)
                      ...|||++|||+++||.+|||+|||+|+++||||+++..  ++++|++|++||++|+||.+|..||.++.....      
T Consensus         3 ~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~   82 (386)
T PRK14289          3 EKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGG   82 (386)
T ss_pred             ccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCC
Confidence            357999999999999999999999999999999999743  678999999999999999999999998643110      


Q ss_pred             cccc-c---------c---CCCC--CC------C---CCCCCCCCCccccc-----------------cccCcCCCCCcc
Q 022733          111 HFGT-N---------A---SAGF--SR------S---SWKGPPRPEALFVD-----------------ENACIGCRECVH  149 (293)
Q Consensus       111 ~~~~-~---------~---~~~~--~~------~---~~~gp~r~~difvd-----------------~~~CigC~~C~~  149 (293)
                      +++. +         +   |++.  +.      .   ....+.++.++.+.                 ..+-+.|..|.+
T Consensus        83 ~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G  162 (386)
T PRK14289         83 GFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHG  162 (386)
T ss_pred             CCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCC
Confidence            1110 0         0   1110  00      0   00112334444432                 123455666655


Q ss_pred             cc------cceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcE
Q 022733          150 HA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYG  213 (293)
Q Consensus       150 ~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~  213 (293)
                      ..      +.+|..|+|.|.....++.++...+++..|+.|.|          .|.+.+++.+.+.++|.||+|+++|++
T Consensus       163 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~  242 (386)
T PRK14289        163 TGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQ  242 (386)
T ss_pred             CCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCE
Confidence            43      56899999999998888888766677899999987          599999999999999999999999999


Q ss_pred             EecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          214 VFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       214 I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      |...|       +..+||++|..+.......+++..|++.
T Consensus       243 i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~  282 (386)
T PRK14289        243 LSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIY  282 (386)
T ss_pred             EEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeE
Confidence            97554       2357899998855444344455556665

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=2.7e-30  Score=247.46  Aligned_cols=203  Identities=21%  Similarity=0.280  Sum_probs=145.2

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhccccccccccc----ccccccc---
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDA----SIGQMRF---  110 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~----~~~~~~~---  110 (293)
                      ..|||+||||+++||.+|||+|||+|+++||||+++..  ++++|++|++||++|+||.+|..||+    ++.....   
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~   87 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP   87 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence            46999999999999999999999999999999998743  67899999999999999999999998    5532110   


Q ss_pred             ------cccc---ccCC---------CC------CCCCC-------CCCCCCCccccc-----------------cccCc
Q 022733          111 ------HFGT---NASA---------GF------SRSSW-------KGPPRPEALFVD-----------------ENACI  142 (293)
Q Consensus       111 ------~~~~---~~~~---------~~------~~~~~-------~gp~r~~difvd-----------------~~~Ci  142 (293)
                            +|+.   ..|+         ++      .|+.+       ..+.++.|+.+.                 ...-+
T Consensus        88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~  167 (389)
T PRK14295         88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQA  167 (389)
T ss_pred             CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccc
Confidence                  0100   0000         00      01111       112344555432                 12344


Q ss_pred             CCCCCcccc------cceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCC
Q 022733          143 GCRECVHHA------SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQP  206 (293)
Q Consensus       143 gC~~C~~~a------p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~  206 (293)
                      .|..|.+.+      +.+|..|.|.|......  +.+  +++.+|+.|.|          .|.+.+++.+.+.|+|.||+
T Consensus       168 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~--~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~  243 (389)
T PRK14295        168 PCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGF--SLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPA  243 (389)
T ss_pred             cCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cce--EEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCC
Confidence            566666543      57899999999765543  433  47789999988          68889999999999999999


Q ss_pred             CCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          207 QPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       207 G~~~G~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      |+++|++|...|       ++.+|||++..+......++++.+||+-
T Consensus       244 G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~  290 (389)
T PRK14295        244 GVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTV  290 (389)
T ss_pred             CCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEE
Confidence            999999996554       2456899998866555555566666665

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=7e-30  Score=243.57  Aligned_cols=207  Identities=24%  Similarity=0.307  Sum_probs=150.3

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhccccccccccccccccc------ccc
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR------FHF  112 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~------~~~  112 (293)
                      +.|||+||||+++||.+|||+|||+|+++||||++++. +.++|+.|++||++|+||.+|..||.++....      ..+
T Consensus         1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~   80 (371)
T PRK14292          1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPF   80 (371)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCccc
Confidence            46999999999999999999999999999999999754 56899999999999999999999999874321      001


Q ss_pred             cc----------ccCCCCCC--CCC-CCCCCCCccccc-----------------cccCcCCCCCcccc-------ccee
Q 022733          113 GT----------NASAGFSR--SSW-KGPPRPEALFVD-----------------ENACIGCRECVHHA-------SNTF  155 (293)
Q Consensus       113 ~~----------~~~~~~~~--~~~-~gp~r~~difvd-----------------~~~CigC~~C~~~a-------p~tf  155 (293)
                      ++          .+|++.++  ..+ .++.++.++...                 ....+.|..|.++.       +.+|
T Consensus        81 ~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C  160 (371)
T PRK14292         81 GGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTC  160 (371)
T ss_pred             CccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccC
Confidence            10          01121110  001 123344455432                 22455677776543       5689


Q ss_pred             eeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCCCC-----
Q 022733          156 VMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWE-----  220 (293)
Q Consensus       156 ~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G~~-----  220 (293)
                      ..|.|.|..+...+..+...+++..|..|.|          .|.|.+.+.+.+.++|.||+|+.+|++|...|.+     
T Consensus       161 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~  240 (371)
T PRK14292        161 PTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPG  240 (371)
T ss_pred             CCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCC
Confidence            9999999888777666655566889999987          6899999999999999999999999999655421     


Q ss_pred             CCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          221 RPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       221 ~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ..+|+|+..+.......+++.+|++.
T Consensus       241 ~~GDL~v~i~v~~h~~f~r~g~dL~~  266 (371)
T PRK14292        241 GNGDLYVHIEMEPHPELRREQEHLIY  266 (371)
T ss_pred             CCCCEEEEEEEecCCccccchhceeE
Confidence            23899998855443344455556665

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=9.8e-30  Score=242.71  Aligned_cols=206  Identities=23%  Similarity=0.300  Sum_probs=150.6

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc---ccc---
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---HFG---  113 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~---~~~---  113 (293)
                      .|||+||||+++||.+|||+|||+|+++||||++++. ++++|+.|++||++|+||.+|..||.++.....   +++   
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~   82 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMG   82 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCcc
Confidence            5999999999999999999999999999999998754 668999999999999999999999998743110   010   


Q ss_pred             ---------cccCCCCCC-C------CCCCCCCCCccccc-----------------cccCcCCCCCccc------ccce
Q 022733          114 ---------TNASAGFSR-S------SWKGPPRPEALFVD-----------------ENACIGCRECVHH------ASNT  154 (293)
Q Consensus       114 ---------~~~~~~~~~-~------~~~gp~r~~difvd-----------------~~~CigC~~C~~~------ap~t  154 (293)
                               ..+|++++. .      ...++.++.++.+.                 ....+.|..|.+.      .+.+
T Consensus        83 ~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~  162 (374)
T PRK14293         83 DMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTT  162 (374)
T ss_pred             cccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCee
Confidence                     011211000 0      01123344455432                 1234556666553      3568


Q ss_pred             eeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCCC-----
Q 022733          155 FVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGW-----  219 (293)
Q Consensus       155 f~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G~-----  219 (293)
                      |..|.|.|..+...+.++...+.+..|+.|.|          .|.+.+++.+.+.++|.||||+++|++|...|.     
T Consensus       163 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~  242 (374)
T PRK14293        163 CSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGL  242 (374)
T ss_pred             CCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCC
Confidence            99999999988888888766666789999987          688899999999999999999999999975542     


Q ss_pred             --CCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          220 --ERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       220 --~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                        ..+||+++..+.......++++.|++-
T Consensus       243 ~~~~~GDL~v~v~v~~~~~f~r~g~DL~~  271 (374)
T PRK14293        243 RGGPPGDLYVYLFVKNDPEFRRDGINILS  271 (374)
T ss_pred             CCCCCcCEEEEEEEeCCCccChhhhceEE
Confidence              346899988865554444455555554

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.96  E-value=8.1e-30  Score=243.06  Aligned_cols=202  Identities=22%  Similarity=0.293  Sum_probs=144.7

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc---------
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF---------  110 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~---------  110 (293)
                      .|||+||||+++||.+|||+|||+|+++||||++++. ++++|++|++||++|+||.+|..||.++.....         
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g   82 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG   82 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence            6999999999999999999999999999999998643 567999999999999999999999998743211         


Q ss_pred             ---ccccc-------cCCCC-CC-C--CC-CCCCCCCccccc-----------------cccCcCCCCCcccc------c
Q 022733          111 ---HFGTN-------ASAGF-SR-S--SW-KGPPRPEALFVD-----------------ENACIGCRECVHHA------S  152 (293)
Q Consensus       111 ---~~~~~-------~~~~~-~~-~--~~-~gp~r~~difvd-----------------~~~CigC~~C~~~a------p  152 (293)
                         +|+.+       +|++. +. .  .+ ..+.++.++.+.                 ..+-+.|..|.+..      +
T Consensus        83 ~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~  162 (372)
T PRK14300         83 NHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETV  162 (372)
T ss_pred             CCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCC
Confidence               00000       01000 00 0  01 112345555533                 22345666776653      5


Q ss_pred             ceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCC----
Q 022733          153 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGG----  218 (293)
Q Consensus       153 ~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G----  218 (293)
                      .+|..|.|.|..+..  .|.  .+++.+|+.|.|          .|.+.+.+.+.+.++|.||||+++|++|...|    
T Consensus       163 ~~C~~C~G~G~~~~~--~g~--~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~  238 (372)
T PRK14300        163 TTCDACSGVGATRMQ--QGF--FTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEA  238 (372)
T ss_pred             ccCCCccCeEEEEEe--ece--EEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccC
Confidence            689999999976542  342  347779999987          69999999999999999999999999997554    


Q ss_pred             ---CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          219 ---WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       219 ---~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                         ++.|+||++..+......++++..|++-
T Consensus       239 ~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~  269 (372)
T PRK14300        239 GIRGGNSGDLYVDIAIKPHDIYKVDGANLHC  269 (372)
T ss_pred             CCCCCCCCCEEEEEEECCCCCeEEecCCEEE
Confidence               2357899998855444444455656654

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.8e-26  Score=211.40  Aligned_cols=203  Identities=24%  Similarity=0.225  Sum_probs=127.4

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccccccccc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGT  114 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~  114 (293)
                      ..+.+|||+||||+++||..|||+|||+||++||||+|+++  +++.|+.|+.||+||+||++|+.||.+|.......+.
T Consensus        12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~   91 (336)
T KOG0713|consen   12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK   91 (336)
T ss_pred             hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc
Confidence            35678999999999999999999999999999999999875  6789999999999999999999999998544331110


Q ss_pred             -------------ccCCCCCC---CCC--CCCCCCCccccccccCcCCCCCcccccc--------ee-----eeeCCcce
Q 022733          115 -------------NASAGFSR---SSW--KGPPRPEALFVDENACIGCRECVHHASN--------TF-----VMDEATGC  163 (293)
Q Consensus       115 -------------~~~~~~~~---~~~--~gp~r~~difvd~~~CigC~~C~~~ap~--------tf-----~~c~g~G~  163 (293)
                                   .+|+..|+   ...  ...+.+.++.++.+.|.  ..|....+.        .+     ..|.+ -.
T Consensus        92 ~~~~g~~~~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~--~h~y~~~~~e~~r~~~v~~~~~g~~~~~~-~~  168 (336)
T KOG0713|consen   92 DGEGGGGGNDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQL--EHFYMGNFVEEVREKGVYKPAPGTRKCNC-RL  168 (336)
T ss_pred             ccccCCcccchHHHhhcccccccCCCcccCCCCCCceEEeehhhch--hhhhcccHHHHHhccCceeecCcccccCC-hh
Confidence                         11111111   000  11223334433333332  222221110        00     01111 11


Q ss_pred             EEEEEecCc-cccee-cccccCCCcceeeeeeecccceEEEEeCCCCCCCcEE--ecCC----CCCCCceehhhHHHHHH
Q 022733          164 ARVKVQYGD-SDQNI-EVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGV--FGGG----WERPANVFMAAKAFNKQ  235 (293)
Q Consensus       164 ~~v~~q~g~-~~~~i-q~ac~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~~G~~I--~g~G----~~~~~~vf~~~~~~~~~  235 (293)
                      .++.++.++ ..+++ +..|..||+    .+..-+...+++.+..|+.+|..+  .+.|    .+.|||+++-..+...-
T Consensus       169 ~~~~~~~~~g~~~~~q~~~~~~~~~----~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~  244 (336)
T KOG0713|consen  169 EMFTQQEGPGRFQMLQEAVCDECPN----VKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHP  244 (336)
T ss_pred             hheeeccCCChhhhhhhhhhccCCc----cceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEeccc
Confidence            223334343 22333 455999999    445566778999999999999987  3444    46788887777554444


Q ss_pred             HHHHhhCCCCC
Q 022733          236 LQQQAAGGSNP  246 (293)
Q Consensus       236 ~~~~~~~~~~~  246 (293)
                      ++.++..|++.
T Consensus       245 ~~~~k~~~~~~  255 (336)
T KOG0713|consen  245 RFERKGDDLYT  255 (336)
T ss_pred             ceecCccchhh
Confidence            44444444444

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2.4e-24  Score=198.34  Aligned_cols=206  Identities=20%  Similarity=0.226  Sum_probs=140.9

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhccccccccccccccccccccc
Q 022733           35 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFG  113 (293)
Q Consensus        35 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~  113 (293)
                      .......|||+||||+++|+..|||.||++|+|+||||.+.++ +.++|++|.+|||+|+|+++|..||..+.....+++
T Consensus        37 s~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~  116 (288)
T KOG0715|consen   37 SRIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFG  116 (288)
T ss_pred             cccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcccccc
Confidence            4445555999999999999999999999999999999999765 678999999999999999999999998754311111


Q ss_pred             -------cccCCC-CC--CC------CCCCC----CCCCccccc---cccCcCCC---CCcccccceeeeeCCcceEEEE
Q 022733          114 -------TNASAG-FS--RS------SWKGP----PRPEALFVD---ENACIGCR---ECVHHASNTFVMDEATGCARVK  167 (293)
Q Consensus       114 -------~~~~~~-~~--~~------~~~gp----~r~~difvd---~~~CigC~---~C~~~ap~tf~~c~g~G~~~v~  167 (293)
                             ...|++ .-  ..      .+...    .++..--+.   .+.|.+|.   .-.+.....|..|.+.|.....
T Consensus       117 g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (288)
T KOG0715|consen  117 GNPFDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNP  196 (288)
T ss_pred             CCccchHHHhhcccccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhCccccccc
Confidence                   011111 00  00      00000    000000011   12333332   2223445689999998865544


Q ss_pred             EecCcccceecccccCCCc----------ceeeeeeecccceEEEEeCCCCCCCcEEecCCCCCCCceehhhHHHHHHHH
Q 022733          168 VQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFLIQPQPKKGYGVFGGGWERPANVFMAAKAFNKQLQ  237 (293)
Q Consensus       168 ~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G~~~~~~vf~~~~~~~~~~~  237 (293)
                      .+..+...    +|..|.+          .|++.+.+...+.+.+.+|+|..++.+|...|.+.. +|||...+-....+
T Consensus       197 ~~~~f~~~----~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-~l~v~~~v~~~~~~  271 (288)
T KOG0715|consen  197 KEDPFILY----TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-DLFVRLIVAKSPSF  271 (288)
T ss_pred             ccCCccee----ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-eEEEEEEeccCccc
Confidence            44433222    7887765          588888889999999999999999999987765433 99999988777777


Q ss_pred             HHhhCCCC
Q 022733          238 QQAAGGSN  245 (293)
Q Consensus       238 ~~~~~~~~  245 (293)
                      +++..+.+
T Consensus       272 ~r~~~~i~  279 (288)
T KOG0715|consen  272 RREGKDIL  279 (288)
T ss_pred             ccccCccc
Confidence            76654444

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=2.4e-23  Score=192.57  Aligned_cols=193  Identities=22%  Similarity=0.283  Sum_probs=113.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccccc-ccccccC
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF-HFGTNAS  117 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~~-~~~~~~~  117 (293)
                      ..|||+||||+++||.+|||+|||+|+++||||++++. ++++|++|++||++|+||.+|..||.++..... ++.....
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~   82 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP   82 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence            57999999999999999999999999999999999753 668999999999999999999999998754211 1110000


Q ss_pred             CCCCCCCCCCC--CCCCccccccccCcCCCCCcccccceeeeeCCcceEEEEEecC-cc----cceecccccCCCcceee
Q 022733          118 AGFSRSSWKGP--PRPEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG-DS----DQNIEVSVDSCPVNCIH  190 (293)
Q Consensus       118 ~~~~~~~~~gp--~r~~difvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g-~~----~~~iq~ac~~Cpg~Cig  190 (293)
                      ++.+...|.+.  ....++|-...  -+.+.-.+ ....+.   ..+.   ....| +.    ...+.+++..|..    
T Consensus        83 ~~~~~~~~~~~~~~~~~d~f~~~f--gg~~~~~~-~g~~~~---~~~~---~~~~g~dl~~~l~isL~ea~~G~~~----  149 (291)
T PRK14299         83 GPPGGGDFSGFNVGDFSDFFQQLF--GGRGGFGG-FGDLFG---SVGR---RARKGRDLEAELPLTLEEAYRGGEK----  149 (291)
T ss_pred             CCCCCCCccccCcCCHHHHHHHHh--CCCCCCCC-cccccc---cccC---CCCCCCCEEEEEEecHHHHhCCCeE----
Confidence            00010111110  01113332211  01100000 000000   0000   00111 11    1123344544443    


Q ss_pred             eeeecccceEEEEeCCCCCCCcEEecCCCCC-CCceehhhHHHHHHHHHHhhCCCCC
Q 022733          191 WVDREELPVLEFLIQPQPKKGYGVFGGGWER-PANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       191 ~~~~~e~k~LeV~Ip~G~~~G~~I~g~G~~~-~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      .... ..+.++|.||||+++|++|...|.+. .||+++..........+++..|++-
T Consensus       150 ~i~l-~g~~~~V~Ip~G~~~G~~ir~~g~G~~~GDL~v~i~v~~h~~f~R~G~DL~~  205 (291)
T PRK14299        150 VVEV-AGERLSVRIPPGVREGQVIRLAGKGRQGGDLYLVVRLLPHPVFRLEGDDLYA  205 (291)
T ss_pred             EEee-CCEEEEEecCCCcCCCcEEEECCCCCCCCCEEEEEEEcCCCCeEEECCEEEE
Confidence            2222 23578999999999999997666433 3899998866555555666666665

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.87  E-value=1.1e-22  Score=189.44  Aligned_cols=67  Identities=34%  Similarity=0.605  Sum_probs=62.2

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccc
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      ..|||+||||+++||.+|||+|||+|+++||||++++. ++++|++|++||++|+||.+|..||.++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            46999999999999999999999999999999998654 67899999999999999999999999763

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.7e-18  Score=154.56  Aligned_cols=72  Identities=35%  Similarity=0.508  Sum_probs=66.5

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      .....|+|+||||+++|+.++||++||+|+++||||++++.  +.++|++||+||+||+||.+|..||.+++..
T Consensus        27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~  100 (279)
T KOG0716|consen   27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG  100 (279)
T ss_pred             ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence            34478999999999999999999999999999999999874  7889999999999999999999999997644

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.69  E-value=1.3e-17  Score=119.81  Aligned_cols=61  Identities=44%  Similarity=0.769  Sum_probs=57.0

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccccc
Q 022733           42 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYD  102 (293)
Q Consensus        42 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD  102 (293)
                      |||+||||+++++.++||++|+++++++|||+++..   +.+.|..|++||++|+||.+|..||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            689999999999999999999999999999997654   3579999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.1e-17  Score=158.38  Aligned_cols=73  Identities=40%  Similarity=0.618  Sum_probs=66.5

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhccccccccccccccccc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR  109 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~  109 (293)
                      +..++.||+||||..+|+..+||++||+|||+||||+||+.   +.+.|+.|+.||+|||||..|..||.+..+..
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil   79 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL   79 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence            45678999999999999999999999999999999999875   55799999999999999999999999876543

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=7.7e-17  Score=148.06  Aligned_cols=69  Identities=41%  Similarity=0.596  Sum_probs=64.6

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ..|||+||||+++|+..||++||+..+++||||+||++  +.+.|+.|.+||+||+|+.+|..||..+...
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~   74 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG   74 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            57999999999999999999999999999999999865  6789999999999999999999999998543

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1.5e-16  Score=150.86  Aligned_cols=71  Identities=32%  Similarity=0.464  Sum_probs=64.3

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ..+.|||.+|||+++||.+|||+|||++++.||||+..++     +++.|+.|.+|||||+||.+|.+||.+|.+.
T Consensus         6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG   81 (546)
T KOG0718|consen    6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG   81 (546)
T ss_pred             cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence            4456999999999999999999999999999999998643     5679999999999999999999999998553

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.62  E-value=3.2e-16  Score=159.96  Aligned_cols=71  Identities=32%  Similarity=0.434  Sum_probs=65.0

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ....+||+||||+++||..+||+|||+||++||||+++.. +.++|+.|++||+||+||.+|..||.+|...
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G  641 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG  641 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence            4568999999999999999999999999999999999754 5679999999999999999999999987543

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.61  E-value=1.1e-15  Score=108.06  Aligned_cols=57  Identities=47%  Similarity=0.707  Sum_probs=52.0

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC---chHHHHHHHHHHHHhhccccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDL   97 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~~~i~~Ay~vL~d~~~   97 (293)
                      .|||+||||+++++.++||++|+++++++|||+++.   .+.+.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            489999999999999999999999999999999974   256799999999999999853

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=3.8e-16  Score=136.63  Aligned_cols=71  Identities=35%  Similarity=0.539  Sum_probs=63.7

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc----hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~----~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ...+|+|+||||..+|+..+|++||++|++++|||++++.    +.+.|+.|+.||.||+|.++|+.||..|.-.
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            3445999999999999999999999999999999999643    4579999999999999999999999987543

>PHA03102 Small T antigen; Reviewed

Probab=99.59  E-value=4.6e-16  Score=130.24  Aligned_cols=66  Identities=26%  Similarity=0.300  Sum_probs=60.9

Q ss_pred             cCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           41 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        41 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ..+|+||||+++|  |..+||+|||++++++|||++++  .+.|++||+||++|+|+.+|..||.++...
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~--~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD--EEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch--hHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            4689999999999  99999999999999999999754  479999999999999999999999988654

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.59  E-value=1.9e-15  Score=105.03  Aligned_cols=53  Identities=49%  Similarity=0.806  Sum_probs=49.6

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcc
Q 022733           42 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMR   94 (293)
Q Consensus        42 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d   94 (293)
                      |||+||||+++++.++||++|+++++++|||+++.  .+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999999975  367899999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.1e-15  Score=130.86  Aligned_cols=74  Identities=32%  Similarity=0.495  Sum_probs=66.6

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhccccccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR  109 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~  109 (293)
                      ......|+||||||++++|..|||+|||+|++++|||+++++  .++.|..|++||+.|+|+..|..|..++...+
T Consensus        94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            446678999999999999999999999999999999998763  56788999999999999999999999986654

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.5e-14  Score=125.96  Aligned_cols=68  Identities=44%  Similarity=0.637  Sum_probs=62.6

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      ....+||+||||+++|+..|||++||+++++||||+++..   +.+.|..|++||++|+|+..|..||..+
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            3467999999999999999999999999999999999864   4589999999999999999999999863

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.48  E-value=2.4e-14  Score=143.57  Aligned_cols=66  Identities=42%  Similarity=0.624  Sum_probs=61.2

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      .|||+||||+++|+..+||++||+|+++||||+++.. +.++|+.|++||++|+||.+|..||.++.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~   68 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGH   68 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence            5999999999999999999999999999999998753 45689999999999999999999999864

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.48  E-value=3.5e-14  Score=131.23  Aligned_cols=71  Identities=35%  Similarity=0.582  Sum_probs=64.2

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhccccccccccccccc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      .+..+|||+||||.++|+..||.+|||+++.+||||...++     ++++|..|-.|-+||+||++|+.||..-.+
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP  465 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP  465 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence            35678999999999999999999999999999999998654     567899999999999999999999997644

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.43  E-value=1.4e-13  Score=118.01  Aligned_cols=65  Identities=26%  Similarity=0.528  Sum_probs=57.2

Q ss_pred             cCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHhhccccccccccccc
Q 022733           41 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        41 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      .|||+||||++.  ++..+|+++|+++++++|||+....       +.+.+..||+||++|+||.+|..|+..+
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l   74 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL   74 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence            489999999996  6889999999999999999997543       2347889999999999999999999764

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.42  E-value=1.3e-13  Score=117.54  Aligned_cols=65  Identities=32%  Similarity=0.469  Sum_probs=57.3

Q ss_pred             cCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCchH-----HHHHHHHHHHHhhccccccccccccc
Q 022733           41 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGH-----EHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        41 ~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~-----~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      .|||++|||++.  ++..+|+++|+++++++|||++.....     ..+..||+||++|+||.+|..|+..+
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            589999999997  789999999999999999999864322     34679999999999999999998875

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.40  E-value=3.1e-13  Score=107.79  Aligned_cols=59  Identities=31%  Similarity=0.418  Sum_probs=52.9

Q ss_pred             CCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhc
Q 022733           33 AGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM   93 (293)
Q Consensus        33 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~   93 (293)
                      ...+.++..++|+||||++++|.+|||++||+|++++|||+++  +.+.+.+|++||++|.
T Consensus        57 ~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG--s~~~~~kIneAyevL~  115 (116)
T PTZ00100         57 GFENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG--STYIASKVNEAKDLLL  115 (116)
T ss_pred             cccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHh
Confidence            4566778899999999999999999999999999999999964  4578899999999995

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.37  E-value=6.8e-13  Score=113.78  Aligned_cols=69  Identities=23%  Similarity=0.355  Sum_probs=60.1

Q ss_pred             CCccCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHhhcccccccccccccc
Q 022733           38 SKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      +...+||++|||++.  .+..+|+++||++++++|||+....       +.+.+..||+||++|+||.+|..|+..+.
T Consensus         1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~   78 (173)
T PRK00294          1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS   78 (173)
T ss_pred             CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            356799999999999  5689999999999999999998543       23478899999999999999999998753

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=8.2e-13  Score=113.65  Aligned_cols=66  Identities=27%  Similarity=0.432  Sum_probs=57.1

Q ss_pred             ccCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCch-------HHHHHHHHHHHHhhccccccccccccc
Q 022733           40 KKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        40 ~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      ..|||+||||++.  ++..+|+++|++|++++|||++....       .+.+..||+||++|+||.+|..|+..+
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l   79 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL   79 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence            4699999999996  68999999999999999999986432       224579999999999999999999764

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=8.3e-13  Score=125.56  Aligned_cols=70  Identities=26%  Similarity=0.369  Sum_probs=64.9

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhccccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      .+..|+|.+|||+++++.++||+.||++|...|||||..+ +++.|+.|+.||++|+|+++|..||.....
T Consensus       232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            4578999999999999999999999999999999999765 678999999999999999999999998754

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.8e-12  Score=115.07  Aligned_cols=67  Identities=34%  Similarity=0.607  Sum_probs=61.8

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           42 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        42 d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      |.|+||||+.+++..||.+|||+|++++|||+++++ +.+.|+.|-.||++|.|.+.|..||-...-.
T Consensus        34 nCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp  101 (329)
T KOG0722|consen   34 NCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP  101 (329)
T ss_pred             hHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence            999999999999999999999999999999999764 5579999999999999999999999876544

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=5.3e-12  Score=108.33  Aligned_cols=81  Identities=26%  Similarity=0.479  Sum_probs=74.2

Q ss_pred             hhhhhhhhhhcccCCCCCCcccceeccCCCCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHH
Q 022733            4 AMVLSYHHVSGYVNPNKSSLSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHE   80 (293)
Q Consensus         4 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~   80 (293)
                      ++|.|-++|..|++|+.+.++.                ++|+||.|.|+.+.++||+.||+|++..|||+|+++   ++.
T Consensus        32 ~vLts~~qIeRllrpgstyfnL----------------NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqk   95 (250)
T KOG1150|consen   32 SVLTSKQQIERLLRPGSTYFNL----------------NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQK   95 (250)
T ss_pred             cccCcHHHHHHHhcCCcccccc----------------ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHH
Confidence            5788999999999999999887                999999999999999999999999999999999876   567


Q ss_pred             HHHHHHHHHHhhcccccccc
Q 022733           81 HTLLLNEAYKVLMRGDLRKD  100 (293)
Q Consensus        81 ~~~~i~~Ay~vL~d~~~R~~  100 (293)
                      .|..|..||.+|-|+..|..
T Consensus        96 AFdivkKA~k~l~n~~~rkr  115 (250)
T KOG1150|consen   96 AFDIVKKAYKLLENDKIRKR  115 (250)
T ss_pred             HHHHHHHHHHHHhCHHHHHH
Confidence            89999999999999886654

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4.5e-12  Score=115.35  Aligned_cols=67  Identities=40%  Similarity=0.600  Sum_probs=61.8

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccccccccc
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      ..|||.+|+|.++|+..+|++||+++++++|||+++..   ++++|++|.+||++|+|+.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            46999999999999999999999999999999998766   44579999999999999999999999986

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=5.5e-12  Score=118.96  Aligned_cols=71  Identities=35%  Similarity=0.549  Sum_probs=64.1

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC---chHHHHHHHHHHHHhhcccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      +.++..|||.||||..+++..|||+|||++++.+|||++..   +++.+|+.+.+||.+|+||.+|..||....
T Consensus       368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d  441 (486)
T KOG0550|consen  368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD  441 (486)
T ss_pred             HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence            34668999999999999999999999999999999999853   356799999999999999999999998653

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.22  E-value=1.3e-11  Score=112.91  Aligned_cols=58  Identities=34%  Similarity=0.540  Sum_probs=51.0

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC---------chHHHHHHHHHHHHhhcc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVLMR   94 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---------~~~~~~~~i~~Ay~vL~d   94 (293)
                      .+...++|+||||++++|.+|||++||+|+++||||+...         .+.++|++|++||++|+.
T Consensus       196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            3556899999999999999999999999999999999632         145799999999999985

>PHA02624 large T antigen; Provisional

Probab=99.17  E-value=1.8e-11  Score=121.70  Aligned_cols=60  Identities=35%  Similarity=0.507  Sum_probs=55.9

Q ss_pred             ccCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccc
Q 022733           40 KKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY  101 (293)
Q Consensus        40 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~Y  101 (293)
                      ..++|++|||+++|  +..+||+|||+++++||||++++  ++.|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd--eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD--EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc--HHHHHHHHHHHHHHhcHHHhhhc
Confidence            45899999999999  99999999999999999999754  58999999999999999999888

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.07  E-value=1.6e-10  Score=99.17  Aligned_cols=67  Identities=24%  Similarity=0.365  Sum_probs=57.7

Q ss_pred             ccCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCch-------HHHHHHHHHHHHhhcccccccccccccc
Q 022733           40 KKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        40 ~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      +.|||++|||++.  .+...+++.|+.|++++|||+....+       .+....||+||.+|+||.+|..|=..+.
T Consensus         1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            4699999999999  89999999999999999999975432       2356789999999999999999976543

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.04  E-value=9.8e-11  Score=111.24  Aligned_cols=71  Identities=28%  Similarity=0.431  Sum_probs=63.0

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC---c----hHHHHHHHHHHHHhhccccccccccccccccc
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---K----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMR  109 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~---~----~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~~  109 (293)
                      +-.|+||||||+.+++..+||++||+|+.+|||||.++   +    -++.++.|++||+.|+|...|..|-.+|...+
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~  173 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS  173 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence            34699999999999999999999999999999999875   1    35688999999999999999999999875543

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.88  E-value=2e-09  Score=91.07  Aligned_cols=54  Identities=30%  Similarity=0.490  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHhhcccccccccccccc
Q 022733           53 ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        53 as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      .+..+|+++|+++++++|||+....       +...+..||+||++|+||.+|..|+..+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            4678999999999999999986432       34578899999999999999999998764

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.2e-08  Score=89.98  Aligned_cols=75  Identities=36%  Similarity=0.412  Sum_probs=63.4

Q ss_pred             CCCCCCCCCccCcccccCCCCC---CCHHHHHHHHHHHHHhhCCCCCC---Cc-hHHHHHHHHHHHHhhccccccccccc
Q 022733           31 GRAGERASKKKNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAG---QK-GHEHTLLLNEAYKVLMRGDLRKDYDA  103 (293)
Q Consensus        31 ~~~~~~~~~~~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~---~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~  103 (293)
                      ++.+.+.+...|+|.+|||+.-   +++.+|.++.++.+.+||||+..   +. ....|+.|+.||+||+|+.+|..||.
T Consensus        33 ~~~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS  112 (379)
T COG5269          33 TREDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS  112 (379)
T ss_pred             HhhhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence            3445666777999999999876   88999999999999999999962   22 24689999999999999999999997


Q ss_pred             cc
Q 022733          104 SI  105 (293)
Q Consensus       104 ~~  105 (293)
                      .-
T Consensus       113 ~d  114 (379)
T COG5269         113 ND  114 (379)
T ss_pred             cc
Confidence            53

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.8e-07  Score=72.73  Aligned_cols=67  Identities=25%  Similarity=0.264  Sum_probs=57.8

Q ss_pred             eeccCCCCCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccc
Q 022733           27 RCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG   95 (293)
Q Consensus        27 ~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~   95 (293)
                      +....+.+.+.|+.+..-.||||+++++.+.||+|+|+++...|||+++.+  -.-.+||||+++|...
T Consensus        42 ~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   42 GAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--YLASKINEAKDLLEGT  108 (112)
T ss_pred             hhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--HHHHHHHHHHHHHhcc
Confidence            344566678889999999999999999999999999999999999999877  3345699999999754

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=2.6e-07  Score=81.45  Aligned_cols=57  Identities=30%  Similarity=0.585  Sum_probs=50.8

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHH-hhcc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYK-VLMR   94 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~-vL~d   94 (293)
                      -.-+.+|.||||...|+.++++.||..|++++|||.+.+. ..+.|.+|.+||. ||+.
T Consensus        44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999999999999999998766 4679999999999 7764

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.3e-06  Score=90.65  Aligned_cols=59  Identities=31%  Similarity=0.436  Sum_probs=50.2

Q ss_pred             CCCCCccCcccccCCCCC----CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcc
Q 022733           35 ERASKKKNYYELLGVSVE----ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR   94 (293)
Q Consensus        35 ~~~~~~~d~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d   94 (293)
                      ...++..+.|+||.|+-+    -..+.||++|++|+.+||||||| ++.++|..+|+|||.|..
T Consensus      1275 P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHHHHH
Confidence            444667889999998866    24588999999999999999996 567899999999999984

>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A

Probab=98.11  E-value=2.5e-07  Score=65.25  Aligned_cols=56  Identities=34%  Similarity=0.570  Sum_probs=41.7

Q ss_pred             cccccCcCCCCCcccccceeeeeCCcceEEEEEecCc--ccceecccccCCCcceeee
Q 022733          136 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD--SDQNIEVSVDSCPVNCIHW  191 (293)
Q Consensus       136 vd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~--~~~~iq~ac~~Cpg~Cig~  191 (293)
                      ||.+.|++|+.|...+|+.|.+++..|...+..+..+  ....+..+...||+.+|++
T Consensus         1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v   58 (58)
T PF13370_consen    1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV   58 (58)
T ss_dssp             E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred             CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence            4678999999999999999999999888888777765  4467889999999999864

...

>PF13459 Fer4_15: 4Fe-4S single cluster domain

Probab=98.10  E-value=9.9e-07  Score=63.50  Aligned_cols=57  Identities=35%  Similarity=0.763  Sum_probs=46.7

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEEEEe--------cCcccceecccccCCCcceeee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQ--------YGDSDQNIEVSVDSCPVNCIHW  191 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q--------~g~~~~~iq~ac~~Cpg~Cig~  191 (293)
                      +++|.+.|+||+.|...+|+.|.+++. |.++++..        .......++.+...||++||.+
T Consensus         1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v   65 (65)
T PF13459_consen    1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV   65 (65)
T ss_pred             CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence            467889999999999999999999988 87766643        1225567889999999999964

>COG1141 Fer Ferredoxin [Energy production and conversion]

Probab=98.01  E-value=1.5e-06  Score=63.10  Aligned_cols=58  Identities=29%  Similarity=0.647  Sum_probs=45.6

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEE------EEecCc-ccceecccccCCCcceeeee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARV------KVQYGD-SDQNIEVSVDSCPVNCIHWV  192 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v------~~q~g~-~~~~iq~ac~~Cpg~Cig~~  192 (293)
                      +++|.++|++|+.|...+|++|.+.+. |.+++      ..+.++ ....++.|..+||+.||++.
T Consensus         3 v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~   67 (68)
T COG1141           3 VIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVE   67 (68)
T ss_pred             EEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEec
Confidence            467889999999999999999999988 65533      222332 34678899999999999764

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.00027  Score=58.99  Aligned_cols=68  Identities=26%  Similarity=0.518  Sum_probs=54.5

Q ss_pred             CCccCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHhhccccccccccccc
Q 022733           38 SKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      ....+||.++|....  ..+..++.-|.-.+++.|||+....       +.+....||+||.+|.||-.|+.|=..+
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl   81 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL   81 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            445789999975554  5677777799999999999995422       4456789999999999999999997654

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.44  E-value=0.0055  Score=60.32  Aligned_cols=44  Identities=32%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhhCCCCCCCch---------HHHHHHHHHHHHhh
Q 022733           49 VSVEANGQEIKEAYRKLQKKYHPDIAGQKG---------HEHTLLLNEAYKVL   92 (293)
Q Consensus        49 v~~~as~~eIk~ayr~l~~~~HPD~~~~~~---------~~~~~~i~~Ay~vL   92 (293)
                      +..-.+.++||++|||..+..||||.+...         ++.|-.+++||...
T Consensus       396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            333458999999999999999999986541         23445556666543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.0021  Score=55.27  Aligned_cols=52  Identities=38%  Similarity=0.583  Sum_probs=44.3

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---------hHHHHHHHHHHHHhh
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---------GHEHTLLLNEAYKVL   92 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---------~~~~~~~i~~Ay~vL   92 (293)
                      .+.|.+||+.+.+...+|+++|+++....|||+....         ..+.++.|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999986321         345778889998754

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=95.34  E-value=0.023  Score=40.88  Aligned_cols=39  Identities=10%  Similarity=0.067  Sum_probs=31.5

Q ss_pred             ccccceeeeeCCcceEEEEEecCcccceecccccCCCcc
Q 022733          149 HHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVN  187 (293)
Q Consensus       149 ~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~  187 (293)
                      ...+.+|..|.|.|....+++.+++.++++.+|+.|.|.
T Consensus        12 ~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~   50 (66)
T PF00684_consen   12 GKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGT   50 (66)
T ss_dssp             TTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSS
T ss_pred             CCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcce
Confidence            345679999999999999988777999999999999983

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=95.15  E-value=0.047  Score=52.48  Aligned_cols=34  Identities=6%  Similarity=0.002  Sum_probs=26.0

Q ss_pred             ceEEEEeCCCCCCCcEEecCCC-------CCCCceehhhHH
Q 022733          198 PVLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAKA  231 (293)
Q Consensus       198 k~LeV~Ip~G~~~G~~I~g~G~-------~~~~~vf~~~~~  231 (293)
                      ..++|.||+|+++|+.|.+.|.       ..+||+||..++
T Consensus       292 ~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v  332 (372)
T PRK14300        292 GKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHV  332 (372)
T ss_pred             CEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            5799999999999999975552       235788876633

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.0093  Score=51.25  Aligned_cols=64  Identities=30%  Similarity=0.497  Sum_probs=48.9

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCch-------HHHHHHHHHHHHhhccccccccccccc
Q 022733           42 NYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        42 d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      +++.++|.++..  ..+.++..|+.+++.+|||+....+       ...+..+|.||.+|.||-+|..|=...
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal   74 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLAL   74 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence            345555655553  4566899999999999999986542       236778999999999999999986544

>PRK14295 chaperone protein DnaJ; Provisional

Probab=94.87  E-value=0.068  Score=51.70  Aligned_cols=34  Identities=12%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             cceEEEEeCCCCCCCcEEecCCCC------CCCceehhhH
Q 022733          197 LPVLEFLIQPQPKKGYGVFGGGWE------RPANVFMAAK  230 (293)
Q Consensus       197 ~k~LeV~Ip~G~~~G~~I~g~G~~------~~~~vf~~~~  230 (293)
                      -..++|.||+|+.+|+.|.++|.+      ..||+||...
T Consensus       312 G~~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~  351 (389)
T PRK14295        312 GPPVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVE  351 (389)
T ss_pred             CCEEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEE
Confidence            347899999999999999766643      3478877653

>PRK14285 chaperone protein DnaJ; Provisional

Probab=94.87  E-value=0.068  Score=51.25  Aligned_cols=32  Identities=6%  Similarity=-0.019  Sum_probs=24.5

Q ss_pred             ceEEEEeCCCCCCCcEEecCCCCC-------CCceehhh
Q 022733          198 PVLEFLIQPQPKKGYGVFGGGWER-------PANVFMAA  229 (293)
Q Consensus       198 k~LeV~Ip~G~~~G~~I~g~G~~~-------~~~vf~~~  229 (293)
                      ..++|.||+|+.+|+.|.++|.+-       .||+||..
T Consensus       293 ~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~  331 (365)
T PRK14285        293 KKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILII  331 (365)
T ss_pred             CEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEE
Confidence            478999999999999997655332       37777765

>PRK14291 chaperone protein DnaJ; Provisional

Probab=94.85  E-value=0.067  Score=51.60  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=26.7

Q ss_pred             ccceEEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022733          196 ELPVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       196 e~k~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      +-..++|.||+|+++|+.|...|.+       ..||+||..++
T Consensus       300 dG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V  342 (382)
T PRK14291        300 DGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHI  342 (382)
T ss_pred             CCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            3457899999999999998655532       34788887643

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=94.82  E-value=0.051  Score=44.34  Aligned_cols=57  Identities=21%  Similarity=0.202  Sum_probs=38.8

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG   95 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~   95 (293)
                      .++-.....||||++..+.++|.+.|.+|-...+|++++..-  .--+|..|.+.|..+
T Consensus        54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY--LQSKV~rAKErl~~E  110 (127)
T PF03656_consen   54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY--LQSKVFRAKERLEQE  110 (127)
T ss_dssp             ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH--HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH--HHHHHHHHHHHHHHH
Confidence            466667789999999999999999999999999999886542  223577788887644

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PRK14282 chaperone protein DnaJ; Provisional

Probab=94.76  E-value=0.08  Score=50.84  Aligned_cols=35  Identities=14%  Similarity=0.046  Sum_probs=26.2

Q ss_pred             ccceEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022733          196 ELPVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  230 (293)
Q Consensus       196 e~k~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~  230 (293)
                      +-..++|.||+|+.+|+.|.++|.+       ..||+||...
T Consensus       301 dG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~  342 (369)
T PRK14282        301 EGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVH  342 (369)
T ss_pred             CCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            3356899999999999998755522       3478888763

>PRK14284 chaperone protein DnaJ; Provisional

Probab=94.76  E-value=0.06  Score=52.09  Aligned_cols=33  Identities=9%  Similarity=0.020  Sum_probs=25.4

Q ss_pred             ceEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022733          198 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  230 (293)
Q Consensus       198 k~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~  230 (293)
                      ..++|.||+|+.+|+.|.++|.|       ..||+||...
T Consensus       306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~  345 (391)
T PRK14284        306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRIS  345 (391)
T ss_pred             cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEE
Confidence            47899999999999998755532       3478887653

>PRK14278 chaperone protein DnaJ; Provisional

Probab=94.69  E-value=0.076  Score=51.19  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=25.3

Q ss_pred             ceEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022733          198 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  230 (293)
Q Consensus       198 k~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~  230 (293)
                      ..++|.||+|+.+|+.+.++|.|       ..||+||..+
T Consensus       290 ~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~  329 (378)
T PRK14278        290 GPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVE  329 (378)
T ss_pred             CeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            56899999999999998755533       3478887653

>PRK14301 chaperone protein DnaJ; Provisional

Probab=94.26  E-value=0.092  Score=50.53  Aligned_cols=32  Identities=9%  Similarity=0.078  Sum_probs=24.6

Q ss_pred             EEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022733          200 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      ++|.||+|+++|+.|.++|.|       ..||+||...+
T Consensus       292 i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V  330 (373)
T PRK14301        292 VTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSV  330 (373)
T ss_pred             EEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEE
Confidence            899999999999999765533       34788876644

>PRK14290 chaperone protein DnaJ; Provisional

Probab=94.24  E-value=0.11  Score=49.73  Aligned_cols=33  Identities=9%  Similarity=0.048  Sum_probs=24.9

Q ss_pred             ceEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022733          198 PVLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  230 (293)
Q Consensus       198 k~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~  230 (293)
                      ..++|.||+|++.|+.|.+.|.+       .+||+||..+
T Consensus       296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~  335 (365)
T PRK14290        296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRIN  335 (365)
T ss_pred             ceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            35899999999999999755532       3578777663

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.11  Score=49.83  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=25.1

Q ss_pred             EEEEeCCCCCCCcEEecCCCCCC-------CceehhhHH
Q 022733          200 LEFLIQPQPKKGYGVFGGGWERP-------ANVFMAAKA  231 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~~~~-------~~vf~~~~~  231 (293)
                      ++|.||+|...|..+.++|.+-|       ||+||...+
T Consensus       292 ~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v  330 (371)
T COG0484         292 VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKV  330 (371)
T ss_pred             EEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEE
Confidence            89999999999999876664433       788876643

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=94.21  E-value=0.0094  Score=61.39  Aligned_cols=55  Identities=13%  Similarity=0.076  Sum_probs=40.4

Q ss_pred             eeecccceEEEEeCCCCCCCcEEecCC--C---CCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          192 VDREELPVLEFLIQPQPKKGYGVFGGG--W---ERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       192 ~~~~e~k~LeV~Ip~G~~~G~~I~g~G--~---~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ..+.+.+.|+|.||+|+++|++|+..|  .   +.+|||++..+.....+++|+.+|||-
T Consensus       691 ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~GDLyVvIkVKPHp~FrRdGdDL~~  750 (871)
T TIGR03835       691 STTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGCGDLKVVFKVIPSNFFQIKNDGLHV  750 (871)
T ss_pred             ceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCCCCEEEEEEEcCCCCeEEECCeEEE
Confidence            345667799999999999999996444  1   224899988866555556667767765

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK14286 chaperone protein DnaJ; Provisional

Probab=94.15  E-value=0.12  Score=49.70  Aligned_cols=33  Identities=9%  Similarity=-0.056  Sum_probs=24.6

Q ss_pred             cceEEEEeCCCCCCCcEEecCCCCC-------CCceehhh
Q 022733          197 LPVLEFLIQPQPKKGYGVFGGGWER-------PANVFMAA  229 (293)
Q Consensus       197 ~k~LeV~Ip~G~~~G~~I~g~G~~~-------~~~vf~~~  229 (293)
                      -..++|.||+|+..|+.+.++|.|.       .||+||..
T Consensus       296 G~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~~  335 (372)
T PRK14286        296 GKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVIV  335 (372)
T ss_pred             CCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEEE
Confidence            3468999999999999987665433       36777665

>PRK14281 chaperone protein DnaJ; Provisional

Probab=94.10  E-value=0.11  Score=50.47  Aligned_cols=32  Identities=6%  Similarity=0.017  Sum_probs=24.5

Q ss_pred             EEEEeCCCCCCCcEEecCCCCC-------CCceehhhHH
Q 022733          200 LEFLIQPQPKKGYGVFGGGWER-------PANVFMAAKA  231 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~~~-------~~~vf~~~~~  231 (293)
                      ++|.||+|+.+|+.+.++|.|-       .||+||..++
T Consensus       314 i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V  352 (397)
T PRK14281        314 VKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNV  352 (397)
T ss_pred             EEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEE
Confidence            7999999999999987655332       3788887643

>PRK14298 chaperone protein DnaJ; Provisional

Probab=94.00  E-value=0.11  Score=49.94  Aligned_cols=31  Identities=6%  Similarity=-0.050  Sum_probs=24.1

Q ss_pred             EEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022733          200 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  230 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~  230 (293)
                      ++|.||+|+..|+.+.++|.|       ..||+||...
T Consensus       293 i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~  330 (377)
T PRK14298        293 VKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVI  330 (377)
T ss_pred             EEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEE
Confidence            799999999999998766533       2478888763

>PRK14279 chaperone protein DnaJ; Provisional

Probab=93.76  E-value=0.15  Score=49.41  Aligned_cols=32  Identities=9%  Similarity=0.103  Sum_probs=24.5

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC------CCCceehhhH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE------RPANVFMAAK  230 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~------~~~~vf~~~~  230 (293)
                      .++|.||+|+++|+.|.++|.+      ..||+||..+
T Consensus       320 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~GDL~I~~~  357 (392)
T PRK14279        320 PVGVKVPAGTADGRILRVRGRGVPKRSGGAGDLLVTVK  357 (392)
T ss_pred             eEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
Confidence            3799999999999999766633      3478877653

>PRK14294 chaperone protein DnaJ; Provisional

Probab=93.57  E-value=0.17  Score=48.57  Aligned_cols=32  Identities=13%  Similarity=0.012  Sum_probs=24.5

Q ss_pred             EEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022733          200 LEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      ++|.||+|+.+|+.|...|.|       ..||+||...+
T Consensus       292 ~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v  330 (366)
T PRK14294        292 RELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEV  330 (366)
T ss_pred             EEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            599999999999998755532       35788887643

>PRK14297 chaperone protein DnaJ; Provisional

Probab=93.57  E-value=0.15  Score=49.23  Aligned_cols=33  Identities=9%  Similarity=0.083  Sum_probs=24.7

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      .++|.||+|+.+|+.+.++|.|       ..||+||...+
T Consensus       299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v  338 (380)
T PRK14297        299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIV  338 (380)
T ss_pred             cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEE
Confidence            3799999999999998755533       34788876533

>PRK14288 chaperone protein DnaJ; Provisional

Probab=93.51  E-value=0.2  Score=48.21  Aligned_cols=33  Identities=9%  Similarity=-0.014  Sum_probs=24.9

Q ss_pred             ceEEEEeCCCCCCCcEEecCCCCC-------CCceehhhH
Q 022733          198 PVLEFLIQPQPKKGYGVFGGGWER-------PANVFMAAK  230 (293)
Q Consensus       198 k~LeV~Ip~G~~~G~~I~g~G~~~-------~~~vf~~~~  230 (293)
                      ..++|.||+|+..|+.+.+.|.|-       -||+||..+
T Consensus       285 ~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~  324 (369)
T PRK14288        285 DELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVELQ  324 (369)
T ss_pred             CEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEE
Confidence            458999999999999987555332       278888763

>PRK14280 chaperone protein DnaJ; Provisional

Probab=93.45  E-value=0.18  Score=48.58  Aligned_cols=31  Identities=10%  Similarity=0.113  Sum_probs=23.5

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC-------CCCceehhh
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAA  229 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~  229 (293)
                      .++|.||+|+..|+.+.+.|.|       ..||+||..
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~  331 (376)
T PRK14280        294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVV  331 (376)
T ss_pred             eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEE
Confidence            3799999999999998755533       247887765

>PRK14277 chaperone protein DnaJ; Provisional

Probab=93.28  E-value=0.2  Score=48.38  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=24.2

Q ss_pred             EEEEeCCCCCCCcEEecCCCCCC-------CceehhhHH
Q 022733          200 LEFLIQPQPKKGYGVFGGGWERP-------ANVFMAAKA  231 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~~~~-------~~vf~~~~~  231 (293)
                      ++|.||+|+..|+.+.++|.|.|       ||+||..++
T Consensus       307 ~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V  345 (386)
T PRK14277        307 VKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYI  345 (386)
T ss_pred             EEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            79999999999999976664433       677776533

>PRK10767 chaperone protein DnaJ; Provisional

Probab=93.22  E-value=0.2  Score=48.16  Aligned_cols=33  Identities=9%  Similarity=0.046  Sum_probs=25.2

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      .++|.||+|+..|+.+.+.|.|       ..||+||...+
T Consensus       289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v  328 (371)
T PRK10767        289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVV  328 (371)
T ss_pred             cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEE
Confidence            5899999999999998655522       34888887633

>PRK14289 chaperone protein DnaJ; Provisional

Probab=93.20  E-value=0.17  Score=48.89  Aligned_cols=33  Identities=6%  Similarity=0.003  Sum_probs=24.8

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      .++|.||+|+++|+.+++.|.|       ..||+||..++
T Consensus       305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v  344 (386)
T PRK14289        305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSV  344 (386)
T ss_pred             eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEE
Confidence            4799999999999998755533       35788776643

>PRK14276 chaperone protein DnaJ; Provisional

Probab=93.07  E-value=0.21  Score=48.18  Aligned_cols=33  Identities=12%  Similarity=0.062  Sum_probs=24.6

Q ss_pred             eEEEEeCCCCCCCcEEecCCC-------CCCCceehhhHH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAKA  231 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~-------~~~~~vf~~~~~  231 (293)
                      .++|.||+|+++|+.+.++|.       +..||+||...+
T Consensus       297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v  336 (380)
T PRK14276        297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNI  336 (380)
T ss_pred             cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEE
Confidence            379999999999999865552       235788877533

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=92.98  E-value=0.24  Score=47.20  Aligned_cols=33  Identities=12%  Similarity=0.104  Sum_probs=25.1

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      .++|.||+|+.+|+.+..+|.|       ..||+||...+
T Consensus       294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v  333 (354)
T TIGR02349       294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKV  333 (354)
T ss_pred             eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEE
Confidence            5899999999999998755532       35788876643

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=92.36  E-value=0.28  Score=47.18  Aligned_cols=32  Identities=9%  Similarity=0.096  Sum_probs=24.4

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC-------CCCceehhhH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAK  230 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~  230 (293)
                      .++|.||+|+..|+.+.+.|.|       ..||+||...
T Consensus       289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~  327 (371)
T PRK14287        289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVR  327 (371)
T ss_pred             CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEE
Confidence            3799999999999998755532       3488888763

>PRK14283 chaperone protein DnaJ; Provisional

Probab=92.29  E-value=0.34  Score=46.65  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=25.2

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC-------CCCceehhhHH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      .++|.||+|++.|+.|.++|.|       ..||+||....
T Consensus       297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v  336 (378)
T PRK14283        297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKV  336 (378)
T ss_pred             eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            6899999999999998766533       23788876643

>PRK14296 chaperone protein DnaJ; Provisional

Probab=92.23  E-value=0.33  Score=46.68  Aligned_cols=32  Identities=0%  Similarity=-0.005  Sum_probs=24.7

Q ss_pred             EEEEeCCCCCCCcEEecCCCCCC--------CceehhhHH
Q 022733          200 LEFLIQPQPKKGYGVFGGGWERP--------ANVFMAAKA  231 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~~~~--------~~vf~~~~~  231 (293)
                      ++|.||+++..|+.+.++|.|-|        ||+||..++
T Consensus       302 ~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V  341 (372)
T PRK14296        302 IKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNI  341 (372)
T ss_pred             EEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEE
Confidence            79999999999999976665433        677776644

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=92.12  E-value=0.18  Score=40.16  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             cCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCc
Q 022733          140 ACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV  186 (293)
Q Consensus       140 ~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg  186 (293)
                      .-..|..|.+....+|..|+|.|......  ++ .++++..|+.|.|
T Consensus        40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~g-~~q~~~~C~~C~G   83 (111)
T PLN03165         40 NTQPCFPCSGTGAQVCRFCVGSGNVTVEL--GG-GEKEVSKCINCDG   83 (111)
T ss_pred             cCCCCCCCCCCCCcCCCCCcCcCeEEEEe--CC-cEEEEEECCCCCC
Confidence            34577777777778999999999876443  32 3567888999988

>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues

Probab=91.22  E-value=0.062  Score=38.57  Aligned_cols=55  Identities=24%  Similarity=0.451  Sum_probs=43.3

Q ss_pred             ccccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceeee
Q 022733          133 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW  191 (293)
Q Consensus       133 difvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~  191 (293)
                      +++.+..+|++-+.|+...|.+|...+. |-.   ...+.....+..++..||..++..
T Consensus         7 ~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v---~~d~a~~~~v~~~v~~CPSGAL~~   61 (64)
T PF06902_consen    7 TVTWDRERCIHAGFCVRGAPEVFDQDDE-PWV---SPDEASAEEVREAVDRCPSGALSY   61 (64)
T ss_pred             EEEECcCcccchhhhhcCCCCcccCCCC-CcC---CcCccCHHHHHHHHHcCCccCcEE
Confidence            4666788999999999999999998887 654   333335677889999999977643

These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=91.18  E-value=0.52  Score=46.15  Aligned_cols=33  Identities=15%  Similarity=0.059  Sum_probs=24.0

Q ss_pred             ceEEEEeCCC--CCCCcEEecCCCC--------CCCceehhhH
Q 022733          198 PVLEFLIQPQ--PKKGYGVFGGGWE--------RPANVFMAAK  230 (293)
Q Consensus       198 k~LeV~Ip~G--~~~G~~I~g~G~~--------~~~~vf~~~~  230 (293)
                      ..|+|.||+|  +..|+.+.++|.|        .-||+||..+
T Consensus       301 ~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~  343 (421)
T PTZ00037        301 RKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFE  343 (421)
T ss_pred             CeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEE
Confidence            4689999999  8999988655522        2378887663

>PRK14293 chaperone protein DnaJ; Provisional

Probab=90.51  E-value=0.63  Score=44.77  Aligned_cols=31  Identities=10%  Similarity=0.040  Sum_probs=23.7

Q ss_pred             EEEEeCCCCCCCcEEecCCCC--------CCCceehhhH
Q 022733          200 LEFLIQPQPKKGYGVFGGGWE--------RPANVFMAAK  230 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~~--------~~~~vf~~~~  230 (293)
                      ++|.||+|++.|+++.+.|.|        .-||+||...
T Consensus       295 ~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~  333 (374)
T PRK14293        295 VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVK  333 (374)
T ss_pred             EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEE
Confidence            689999999999998755532        2378887763

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters

Probab=90.06  E-value=0.089  Score=29.61  Aligned_cols=19  Identities=32%  Similarity=0.850  Sum_probs=15.6

Q ss_pred             cccccccCcCCCCCccccc
Q 022733          134 LFVDENACIGCRECVHHAS  152 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap  152 (293)
                      +++|.++|+||+.|....|
T Consensus         3 ~~iD~~rCiGC~~C~~AC~   21 (22)
T PF12797_consen    3 MVIDLERCIGCGACEVACP   21 (22)
T ss_pred             eEEccccccCchhHHHhhC
Confidence            6789999999999986443

Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding

>PRK14292 chaperone protein DnaJ; Provisional

Probab=89.46  E-value=0.89  Score=43.65  Aligned_cols=32  Identities=9%  Similarity=0.057  Sum_probs=23.9

Q ss_pred             EEEEeCCCCCCCcEEecCCC-------CCCCceehhhHH
Q 022733          200 LEFLIQPQPKKGYGVFGGGW-------ERPANVFMAAKA  231 (293)
Q Consensus       200 LeV~Ip~G~~~G~~I~g~G~-------~~~~~vf~~~~~  231 (293)
                      .+|.||+|+.+|+.+...|.       ..+||+||..++
T Consensus       290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v  328 (371)
T PRK14292        290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEI  328 (371)
T ss_pred             EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEE
Confidence            47999999999999865552       235788877643

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=89.45  E-value=0.33  Score=42.20  Aligned_cols=52  Identities=10%  Similarity=-0.130  Sum_probs=34.5

Q ss_pred             ceeeeeCCcceEEEEEecCcccceecccccCCCcceeeeeeecccceEEEEeCCCCCCCcEEecCCC
Q 022733          153 NTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGGW  219 (293)
Q Consensus       153 ~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G~  219 (293)
                      .+|..|.|.|....          -...|+.|+|    .+.+...+.+.+.+ .|+.+|++|...-+
T Consensus       100 ~~C~~C~G~G~~i~----------~~~~C~~C~G----~G~v~~~~~~~~k~-~g~~~g~~it~~~~  151 (186)
T TIGR02642       100 CKCPRCRGTGLIQR----------RQRECDTCAG----TGRFRPTVEDLLKS-FGVDSGAAIVLKDN  151 (186)
T ss_pred             CcCCCCCCeeEEec----------CCCCCCCCCC----ccEEeeeEEEEEEe-eeccCCceeeHHHh
Confidence            45666667775321          0144666655    45566666778888 99999999987654

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=85.70  E-value=1.7  Score=38.10  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=31.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcc
Q 022733           50 SVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR   94 (293)
Q Consensus        50 ~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d   94 (293)
                      +++||.+||.+|+.++..+|--|      ++....|..||+.+.=
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd------~~~~~~IEaAYD~ILM   39 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD------EKSREAIEAAYDAILM   39 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHH
Confidence            57999999999999999999322      3566779999997653

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=84.80  E-value=1.6  Score=30.68  Aligned_cols=45  Identities=24%  Similarity=0.429  Sum_probs=33.0

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR   94 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d   94 (293)
                      .+.|++|||+++.+.+.|-.+|+.... -.|        .....+.+|..++.+
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P--------~~~~~~r~AL~~Ia~   49 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP--------SQKDTLREALRVIAE   49 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh--------HhHHHHHHHHHHHHH
Confidence            467999999999999999999998777 112        233445666666653

>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]

Probab=82.37  E-value=0.39  Score=42.31  Aligned_cols=57  Identities=21%  Similarity=0.509  Sum_probs=36.7

Q ss_pred             cccccccCcCCCCCcccccc-------------eeeeeCCcceEEEEEecCcccceecccccCCCcceeeeeeecccceE
Q 022733          134 LFVDENACIGCRECVHHASN-------------TFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDREELPVL  200 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~-------------tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~~~~~e~k~L  200 (293)
                      +.+|.+.||||+.|...+|-             .|++|-...      ..|    ....-...||++++.++..++....
T Consensus        95 V~vd~d~CIGC~yCi~ACPyga~~~~~~~~~~~KCt~C~~ri------~~g----~~PaCV~~CP~~A~~fG~~~d~~~~  164 (203)
T COG0437          95 VLVDKDLCIGCGYCIAACPYGAPQFNPDKGVVDKCTFCVDRV------AVG----KLPACVEACPTGALIFGDIDDPKSK  164 (203)
T ss_pred             EEecCCcccCchHHHhhCCCCCceeCcccCcccccCcchhhH------hcC----CCCcccccCCcccccccchhhcchh
Confidence            44678899999999977663             233332110      001    2234468899999999988886554

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]

Probab=80.16  E-value=0.93  Score=38.56  Aligned_cols=69  Identities=20%  Similarity=0.350  Sum_probs=41.4

Q ss_pred             CCCCCCCCccccccccCcCCCCCcccccceee----eeCCcceEEEEEecCccccee--cccccCCCcceeeeee
Q 022733          125 WKGPPRPEALFVDENACIGCRECVHHASNTFV----MDEATGCARVKVQYGDSDQNI--EVSVDSCPVNCIHWVD  193 (293)
Q Consensus       125 ~~gp~r~~difvd~~~CigC~~C~~~ap~tf~----~c~g~G~~~v~~q~g~~~~~i--q~ac~~Cpg~Cig~~~  193 (293)
                      |+|.-...-+...+++|+.|..|...+|..-.    -....|..+.++-..+|-.-|  .--.+.||++||..+.
T Consensus        97 FRGehalrRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaivegp  171 (212)
T KOG3256|consen   97 FRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP  171 (212)
T ss_pred             cccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCccceeccC
Confidence            33333333455668899999999988886321    122336666666655543322  1223578999997663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	293
1fxr_A	64	Crystal Structure Of The Ferredoxin I From Desulfov		1e-08
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-08
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		4e-08
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		3e-07
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-06
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		1e-06
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-06
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-06
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-06
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-06
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-06
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		4e-06
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		9e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		1e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		2e-05
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		5e-05
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		1e-04
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-04
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		2e-04
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		2e-04

>pdb|1FXR|A Chain A, Crystal Structure Of The Ferredoxin I From Desulfovibrio Africanus At 2.3 Angstroms Resolution Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVD 193
            +VD++ CI C  CV  A   F MD     A VK   G S + +E ++D+CPV CIHW D
Sbjct: 4   FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63
Query: 194 R 194
Sbjct: 64  E 64

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--IAGQKGHEHTLLLNEAYKVLMRGDLR 98
           +N+Y LLGVS  A+ +EI++A++KL  K HPD        H   L +N AY+VL   DLR
Sbjct: 21  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 99  KDYD 102
           K YD
Sbjct: 81  KKYD 84

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI--AGQKGHEHTLLLNEAYKVLMRGDLR 98
           +N+Y LLGVS  A+ +EI++A++KL  K HPD        H   L +N AY+VL   DLR
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 99  KDYD 102
           K YD
Sbjct: 62  KKYD 65

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRK 99
           +YY++LGV   A+ +EIK+AY +L KKYHPD      K  E    L EAY+VL     RK
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 100 DYDASIGQMRFHFGTNASAG 119
            YDA        +G+  S+G
Sbjct: 68  QYDA--------YGSGPSSG 79

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLRKD 100
           +YYE+LGVS  A+ +++K+AYR+L  K+HPD     G       +  AY VL   + RK 
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 101 YDASIGQMRFHFGTNASAG 119
           YD         FG+  S+G
Sbjct: 68  YD--------QFGSGPSSG 78

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPD---IAGQKGHEHTLLLNEAYKVLMRGDLR 98
           NYYE+LGV   A+ ++IK+AYRKL  ++HPD      ++  +   L++EAY+VL     R
Sbjct: 10  NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 99  KDYD 102
             YD
Sbjct: 70  SLYD 73

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 97
           K++YYE+LGVS  A  +EI++AY++L  KYHPD   G K  E     + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 98  RKDYD 102
           R  YD
Sbjct: 62  RAAYD 66

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 97
           K++YYE+LGVS  A  +EI++AY++L  KYHPD   G K  E     + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 98  RKDYD 102
           R  YD
Sbjct: 62  RAAYD 66

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 37  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRG 95
           A + K+YY +LGV    + + IK AYR+L +KYHPD++ +   E     L EA++VL   
Sbjct: 24  AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDE 83
Query: 96  DLRKDYD 102
             R +YD
Sbjct: 84  QRRAEYD 90

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTLL-LNEAYKVLMRGDL 97
           K++YYE+LGVS  A  +EI++AY++L  KYHPD   G K  E     + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61
Query: 98  RKDYD 102
           R  YD
Sbjct: 62  RAAYD 66

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 98
           K+  YY++LGV   A  +E+K+AYRKL  KYHPD    +G E    +++AY+VL     R
Sbjct: 4   KETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG-EKFKQISQAYEVLSDAKKR 62
Query: 99  KDYD 102
           + YD
Sbjct: 63  ELYD 66

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 9/77 (11%)
Query: 44  YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKDYD 102
           Y +LGVS  A+  +IK+AY+KL +++HPD     G E   + +++AY++L   + R +YD
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
Query: 103 ASIGQMRFHFGTNASAG 119
                   H+G+  S+G
Sbjct: 80  --------HYGSGPSSG 88

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 43  YYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRKDY 101
           YY++LGV   A+ ++IK+A+ KL  KYHPD       E     + EAY+ L   + RK+Y
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 102 DASIGQMRFHFGTNAS 117
           D ++G   F  G   S
Sbjct: 69  D-TLGHSAFTSGKGQS 83

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 98
           K+  YY++LGV  +A+  E+K+AYRK+  K+HPD     G E    +++AY+VL     R
Sbjct: 6   KETGYYDVLGVKPDASDNELKKAYRKMALKFHPD-KNPDGAEQFKQISQAYEVLSDEKKR 64
Query: 99  KDYD 102
           + YD
Sbjct: 65  QIYD 68

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 37  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRG 95
            S+ K+YY ++GV    + + IK AYR+L +KYHPD++ +   E     + EA++VL   
Sbjct: 1   GSELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDE 60
Query: 96  DLRKDYD 102
             R +YD
Sbjct: 61  QRRAEYD 67

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 98
           K+   Y+LLGVS  AN QE+K+ YRK   KYHPD       E    ++EA+++L     R
Sbjct: 6   KETKLYDLLGVSPSANEQELKKGYRKAALKYHPD-KPTGDTEKFKEISEAFEILNDPQKR 64
Query: 99  KDYD 102
           + YD
Sbjct: 65  EIYD 68

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 42  NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLN---EAYKVLMRGDLR 98
           +YYE+L V  +A+ + IK+AYRKL  K+HPD   +   E         EAY+VL     R
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69
Query: 99  KDYDASIGQMRFHFGTNASAG 119
             YD         +G+  S+G
Sbjct: 70  DIYD--------RYGSGPSSG 82

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLL-LNEAYKVLMRGDLRK 99
           K+YY+ LG++  A+ +EIK AYR+   +YHPD   + G E     + EAY VL     R+
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 100 DYD 102
            +D
Sbjct: 63  IFD 65

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 36  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD 72
           + S+K++YY++LGV   A  QEI +AYRKL  ++HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 36  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD 72
           + S+K++YY++LGV   A  QEI +AYRKL  ++HPD
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	293
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	3e-27
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	3e-26
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	3e-20
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-18
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-18
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	8e-18
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	1e-16
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-16
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-16
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-16
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-16
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-16
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-16
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-16
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-16
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	5e-16
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	6e-16
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	9e-16
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-15
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-15
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-15
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-15
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	5e-15
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	7e-15
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	8e-15
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	8e-15
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	1e-14
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	4e-14
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	6e-13
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	6e-13
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	7e-13
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	9e-13
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	1e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-10
2guz_A	71	Mitochondrial import inner membrane translocase su	9e-10
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	6e-09
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	1e-07
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	9e-04

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A Length = 64

 Score = 99.8 bits (249), Expect = 3e-27
 Identities = 26/61 (42%), Positives = 34/61 (55%)

Query: 133 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWV 192
             +VD++ CI C  CV  A   F MD     A VK   G S + +E ++D+CPV CIHW 
Sbjct: 3   KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE 62

Query: 193 D 193
           D
Sbjct: 63  D 63

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 Length = 59

 Score = 97.1 bits (242), Expect = 3e-26
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 133 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW 191
            + +D   CIGC  CV      F M +    A V      ++   + ++D+CPV  I  
Sbjct: 1   TIVIDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAEC-AQDAIDACPVEAISK 58

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A Length = 58

 Score = 81.4 bits (201), Expect = 3e-20
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 135 FVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH 190
               + C+ C  CV    + F M+E    A V     D D  +E ++DSCP   I 
Sbjct: 2   IEVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDC-VEEAIDSCPAEAIV 56

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 23/135 (17%)

Query: 36  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--------IAGQKGHEHTLLLNE 87
               KK++Y +LG    AN  ++K+ Y+KL   YHPD           ++  +  + +++
Sbjct: 5   EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQ 64

Query: 88  AYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALF------------ 135
           A+K+L   + +++YD    +          A              + +            
Sbjct: 65  AWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVS 124

Query: 136 ---VDENACIGCREC 147
               +E + I C  C
Sbjct: 125 KDEAEEVSLISCDTC 139

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 80.3 bits (198), Expect = 1e-18
 Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 6/119 (5%)

Query: 38  SKKKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 95
            +     +LLG+   A  N   +++AY K  K++HPD  G    E    +N  YK +  G
Sbjct: 8   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDG 65

Query: 96  DLRKDYDA--SIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHAS 152
                             F ++ + G      K  P           C+ C   + H +
Sbjct: 66  VKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQWPECVKKMSTNCICLLCLLRMKHEN 124

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 75.5 bits (186), Expect = 8e-18
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 9/90 (10%)

Query: 31  GRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAY 89
           G     ++   + Y +LGVS  A+  +IK+AY+KL +++HPD     G E     +++AY
Sbjct: 7   GILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAY 66

Query: 90  KVLMRGDLRKDYDASIGQMRFHFGTNASAG 119
           ++L   + R +YD        H+G+  S+G
Sbjct: 67  EILSNEEKRTNYD--------HYGSGPSSG 88

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 7/67 (10%)

Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI---AGQKGHEHTLLLNEAYKVLMRG 95
           K+  YY++LGV  +A+  E+K+AYRK+  K+HPD      ++  +    +++AY+VL   
Sbjct: 6   KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQ----ISQAYEVLSDE 61

Query: 96  DLRKDYD 102
             R+ YD
Sbjct: 62  KKRQIYD 68

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 72.3 bits (178), Expect = 1e-16
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLR 98
             +YYE+LGVS  A+ +++K+AYR+L  K+HPD     G       +  AY VL   + R
Sbjct: 6   SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65

Query: 99  KDYD 102
           K YD
Sbjct: 66  KQYD 69

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 72.4 bits (178), Expect = 1e-16
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 35  ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYKVLM 93
            R    K+ +++LGV   A+  E+ +AYRKL    HPD     G  +    +  A   L+
Sbjct: 21  RRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALL 80

Query: 94  RGDLRKDYDA 103
           +         
Sbjct: 81  KNIKSGPSSG 90

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-----AGQKGHEHTLLLNEAYKVLM 93
           + K+YY +LGV    + + IK AYR+L +KYHPD+     A  K  +    L EA++VL 
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKD----LAEAWEVLK 81

Query: 94  RGDLRKDYDASIGQMRFHFGTNASAGFSRSSWKG 127
               R +YD  + Q R   G          S+  
Sbjct: 82  DEQRRAEYDQ-LWQHRNDPGFGRQRQTHEQSYSQ 114

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 72.9 bits (179), Expect = 2e-16
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 38  SKKKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 95
            +     +LLG+   A  N   +++AY K  K++HPD  G +  E    +N  YK +  G
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE--EKMKKMNTLYKKMEDG 62

Query: 96  DLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDE 138
                     G                  W      E LF  E
Sbjct: 63  VKYAHQP-DFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSE 104

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 72.1 bits (177), Expect = 2e-16
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 16/99 (16%)

Query: 29  CNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD--------IAGQKGHE 80
            +       + KK++Y +LG    AN  ++K+ Y+KL   YHPD           ++  +
Sbjct: 4   GSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQ 63

Query: 81  HTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAG 119
             + +++A+K+L   + +K YD           +  S+G
Sbjct: 64  KFIEIDQAWKILGNEETKKKYDL--------QRSGPSSG 94

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 10/72 (13%)

Query: 37  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYK 90
           +    +YY++LGV   A+ +EIK+AY +L KKYHPD       A +K  +    L EAY+
Sbjct: 3   SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQ----LAEAYE 58

Query: 91  VLMRGDLRKDYD 102
           VL     RK YD
Sbjct: 59  VLSDEVKRKQYD 70

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 71.6 bits (176), Expect = 3e-16
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLR 98
             +YY++LGV   A+ ++IK+A+ KL  KYHPD       E     + EAY+ L   + R
Sbjct: 6   SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRR 65

Query: 99  KDYDASIGQMRF-HFGTNASAGFS 121
           K+YD         H    +  G S
Sbjct: 66  KEYD------TLGHSAFTSGKGQS 83

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 71.7 bits (176), Expect = 4e-16
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 40  KKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDI-----AGQKGHEHTLLLNEAYKVLM 93
            +N Y++L V+ E  + Q++ +AYR L +K+HPD            E   ++  AY+ L 
Sbjct: 14  LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73

Query: 94  RGDLRKDYD---ASIGQMRFHF 112
             + + +YD       Q  +++
Sbjct: 74  DDEAKTNYDYYLDHPDQRFYNY 95

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 71.3 bits (175), Expect = 5e-16
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 31  GRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLL 84
           G  G+ +  +   Y+LLGV   A   +IK AY +    YHPD       A ++       
Sbjct: 7   GSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTR---- 62

Query: 85  LNEAYKVLMRGDLRKDYD 102
           +++AY VL    LR+ YD
Sbjct: 63  ISQAYVVLGSATLRRKYD 80

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 71.3 bits (175), Expect = 6e-16
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 36  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAY 89
           R+   ++YY LLG    ++ ++I   ++    + HPD       A +   +    L +A 
Sbjct: 15  RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQK----LQKAK 70

Query: 90  KVLMRGDLRKDYD---ASIGQMRFHFGTNASAGFSRSS 124
           ++L   + R  YD    S   M F      +     S 
Sbjct: 71  EILTNEESRARYDHWRRSQMSMPFQQWEALNDSVKTSG 108

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 70.7 bits (174), Expect = 9e-16
 Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKGHEHTL-LLNEAYKVLMRGDL 97
           K++YYE+LGVS  A  +EI++AY++L  KYHPD   G K  E     + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 98  RKDYD-----ASIGQMRFHFGTNASAGFS 121
           R  YD     A         G    A FS
Sbjct: 62  RAAYDQYGHAAFEQGGMGGGGFGGGADFS 90

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTL-LLNEAYKVLMRGDLR 98
            K+YY+ LG++  A+ +EIK AYR+   +YHPD   + G E     + EAY VL     R
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 99  KDYD 102
           + +D
Sbjct: 62  EIFD 65

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 7/67 (10%)

Query: 39  KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI---AGQKGHEHTLLLNEAYKVLMRG 95
           K+   Y+LLGVS  AN QE+K+ YRK   KYHPD      +K  E    ++EA+++L   
Sbjct: 6   KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKE----ISEAFEILNDP 61

Query: 96  DLRKDYD 102
             R+ YD
Sbjct: 62  QKREIYD 68

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 74.8 bits (183), Expect = 3e-15
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 37  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG--QKGHEHTLLLNEAYKVLMR 94
               +N+Y LLGVS  A+ +EI++A++KL  K HPD        H   L +N AY+VL  
Sbjct: 17  GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD 76

Query: 95  GDLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDENACIGCRECVHHASNT 154
            DLRK YD    +            +S   +      +   +           V+     
Sbjct: 77  EDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELW 136

Query: 155 FVMDEATGC 163
           FV   + G 
Sbjct: 137 FVNFYSPGS 145

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 71.4 bits (175), Expect = 5e-15
 Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 41  KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-AGQKG-HEHTLLLNEAYKVLMRGDLR 98
           +N+Y LLGVS  A+ +EI++A++KL  K HPD        H   L +N AY+VL   DLR
Sbjct: 2   QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61

Query: 99  KDYDASIGQMRF-HFGTNASAGFSRSSWKG 127
           K YD      ++   G   + G    SW  
Sbjct: 62  KKYD------KYGEKGLEDNQGGQYESWSY 85

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 69.0 bits (169), Expect = 5e-15
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI------AGQKGHEHTLLLNEAYKVLM 93
            ++ Y +LG+   A   +IK++YRKL  KYHPD       A  K  E    +N A+ +L 
Sbjct: 16  GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKE----INNAHAILT 71

Query: 94  RGDLRKDYDASIGQMRF-HFGTNASAGFS 121
               R  YD      ++   G   +  F 
Sbjct: 72  DATKRNIYD------KYGSLGLYVAEQFG 94

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 67.7 bits (166), Expect = 7e-15
 Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 18/96 (18%)

Query: 37  ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD-------IAGQKGHEHTLLLNEAY 89
           +S   NYYE+LGV   A+ ++IK+AYRKL  ++HPD        A +K       ++EAY
Sbjct: 5   SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKL----VSEAY 60

Query: 90  KVLMRGDLRKDYDASIGQMRF-HFGTNASAGFSRSS 124
           +VL     R  YD      R       A  G S  S
Sbjct: 61  EVLSDSKKRSLYD------RAGCDSWRAGGGASGPS 90

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 67.3 bits (165), Expect = 8e-15
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 11/75 (14%)

Query: 35  ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDI-------AGQKGHEHTLLLNE 87
             +S   +YYE+L V  +A+ + IK+AYRKL  K+HPD        A ++  +    + E
Sbjct: 3   SGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQ----VAE 58

Query: 88  AYKVLMRGDLRKDYD 102
           AY+VL     R  YD
Sbjct: 59  AYEVLSDAKKRDIYD 73

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A Length = 60

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 135 FVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVD 193
            VD +ACIGC  C +   + F + +  G A+V     D     + + DSCP   I   +
Sbjct: 4   RVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLPCAKD-AADSCPTGAISVEE 60

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 68.5 bits (167), Expect = 4e-14
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 38  SKKKNYYELLGVSV-------EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYK 90
                +YEL   +          +   +++ YR+LQ ++HPD+A Q   E +  LN+AY 
Sbjct: 8   RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQG-SEQSSTLNQAYH 66

Query: 91  VLMRGDLRKDYDASIGQ 107
            L     R  Y   + +
Sbjct: 67  TLKDPLRRSQYMLKLLR 83

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 62.4 bits (152), Expect = 6e-13
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 35  ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD-------IAGQKGHEHTLLLNE 87
            R S  K    ++  + +    E K+  R+L  K+HPD       IA +        L  
Sbjct: 10  PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKH----LQN 65

Query: 88  AYKVLMRGDLRKDYD 102
               L +   +   D
Sbjct: 66  EINRLEK---QAFLD 77

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 62.7 bits (153), Expect = 6e-13
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 18/101 (17%)

Query: 43  YYELLGVSVEANGQEIKEAYRKLQKKYHPD-------IAGQKGHEHTLLLNEAYKVLMRG 95
           YYE+L V   A+  +IK+AYR+   ++HPD        A +K  E    + EAY+VL   
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKE----VAEAYEVLSDK 59

Query: 96  DLRKDYDASIGQMRF-HFGTNASAGFSRSSWKGPPRPEALF 135
             R+ YD      R+   G   +      +  G   P    
Sbjct: 60  HKREIYD------RYGREGLTGTGTGPSRAEAGSGGPGLEH 94

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 64.6 bits (157), Expect = 7e-13
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 42  NYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVL 92
           +Y+ L G+        Q +   ++ LQ++YHPD              + +  +N+A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 93  MRGDLRKDYDASI 105
               +R +Y  S+
Sbjct: 62  RHPLMRAEYLLSL 74

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 61.9 bits (150), Expect = 9e-13
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 38  SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 95
           + K+   ELL +  +  G    +++AY++     HPD  G   H     LN  +      
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTE 65

Query: 96  DLRKDYDAS 104
                 +  
Sbjct: 66  VYNLRMNLG 74

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A Length = 66

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 135 FVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEV---SVDSCPVNCIHW 191
            VD++ CIG   C     + F M++  G A+ KV+  + ++       ++++CPV+ I  
Sbjct: 5   SVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITI 63

Query: 192 VD 193
            +
Sbjct: 64  EE 65

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 38  SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIA---GQKGHEHTLL--LNEAYKVL 92
           S+K++YY++LGV   A  QEI +AYRKL  ++HPD      +K         +  A +VL
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

Query: 93  MRGDLRKDYDA 103
              ++RK +D 
Sbjct: 439 SDPEMRKKFDD 449

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 53.1 bits (128), Expect = 9e-10
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 40 KKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLR 98
           K   ++L ++      +++KE +RK+    HPD  G         +NEA   L +  + 
Sbjct: 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--SPFLATKINEAKDFLEKRGIS 70

Query: 99 K 99
          K
Sbjct: 71 K 71

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 54.0 bits (129), Expect = 6e-09
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 28  CCNGRAGERASKKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKG------- 78
           C   RA +     ++Y+ L+  +        +++  Y++LQ+  HPD   Q+        
Sbjct: 30  CPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFS 89

Query: 79  HEHTLLLNEAYKVLMRGDLRKDYD 102
            +H+ L+N+AYK L+    R  Y 
Sbjct: 90  EKHSTLVNDAYKTLLAPLSRGLYL 113

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* Length = 81

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 131 PEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEV--------SVD 182
           P+   VD+  CI C  C   A + +  DE  G A V +        +          + +
Sbjct: 1   PKYTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFE 59

Query: 183 SCPVNCIHWVD 193
            CP + I   D
Sbjct: 60  GCPTDSIKVAD 70

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 44  YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHT-----LLLNEAYKVLMRGDLR 98
           ++ +G++     +++K+ YRK     HPD A  + +E       + LN+A+        +
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179

Query: 99  KDY 101
             Y
Sbjct: 180 PLY 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 91/237 (38%)

Query: 35  ERASKKKNYYELLGVSVEA-----NGQEIKEAYRK-LQKKYHPDIAGQKGH-EHTLLL-- 85
           E    +  Y ++L V  +A     + +++++  +  L K+    I   K     TL L  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 86  ------NEAYKVLMRGDLRKDYDASIGQMRFHFGTNASAGFSRSSW----KGPPRPEALF 135
                  E  +  +   LR +Y                  F  S      + P     ++
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYK-----------------FLMSPIKTEQRQPSMMTRMY 112

Query: 136 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVDRE 195
           ++       R+ +++ +  F                               N    V R 
Sbjct: 113 IE------QRDRLYNDNQVFA----------------------------KYN----VSRL 134

Query: 196 ELPVLEF---LIQPQPKKG---YGVFGGG--WERPANVFMAAKA-FNKQLQQQAAGG 243
           + P L+    L++ +P K     GV G G  W       +A     + ++Q +    
Sbjct: 135 Q-PYLKLRQALLELRPAKNVLIDGVLGSGKTW-------VALDVCLSYKVQCKMDFK 183

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 36.9 bits (85), Expect = 9e-04
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 44 YELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHT-----LLLNEAYKVL 92
          ++ +G++     +++K+ YRK     HP  A  + +E       + LN+A+   
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEF 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.9
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.82
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.82
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.81
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.81
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.81
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.8
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.8
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.8
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.8
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.79
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.79
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.79
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.77
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.76
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.75
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.72
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.72
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.72
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.69
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.67
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.67
2guz_A	71	Mitochondrial import inner membrane translocase su	99.67
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.66
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.66
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.66
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.64
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.63
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.61
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.6
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.59
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.57
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.47
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	99.25
2guz_B	65	Mitochondrial import inner membrane translocase su	98.99
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.91
3agx_A	181	DNAJ homolog subfamily B member 1; chaperone; 1.85	97.8
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.02
2q2g_A	180	HSP40 protein, heat shock 40 kDa protein, putative	96.66
1c3g_A	170	Heat shock protein 40; beta sheets, short helices,	96.56
1dax_A	64	Ferredoxin I; electron transport, electron-transfe	94.5
1iqz_A	81	Ferredoxin; iron-sulfer protein, ultlahigh resolut	93.74
1dwl_A	59	Ferredoxin I; electron transfer, model, heteronucl	93.73
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	91.08
1sj1_A	66	Ferredoxin; thermostability, iron-sulfur cluster,	90.82
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	90.0
1f2g_A	58	Ferredoxin II; electron transport, FDII desulfovib	89.47
1rof_A	60	Ferredoxin; electron transport, iron-sulfur; NMR {	88.11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	86.73
3i38_A	109	Putative chaperone DNAJ; structural genomics, prot	85.19

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.90  E-value=3.4e-26  Score=213.39  Aligned_cols=72  Identities=36%  Similarity=0.593  Sum_probs=0.0

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccc
Q 022733           35 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        35 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      ++.+...|||+||||+++||.+|||+|||+|+++||||+++++ ++++|++|++||++|+||.+|..||.++.
T Consensus        22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            3446778999999999999999999999999999999998754 56799999999999999999999999853

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=9.8e-21  Score=140.94  Aligned_cols=73  Identities=42%  Similarity=0.605  Sum_probs=65.9

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      +++...|||+||||+++++.++||++|++|++++|||+++.  .+.+.|+.|++||++|+||.+|..||.++...
T Consensus         2 s~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            2 SSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             CSSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            45667899999999999999999999999999999999874  35789999999999999999999999986543

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=6.8e-21  Score=141.52  Aligned_cols=73  Identities=36%  Similarity=0.552  Sum_probs=66.2

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ++....|||+||||+++++.++||++|++|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus         2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            446678999999999999999999999999999999999764 5679999999999999999999999987544

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-20  Score=141.38  Aligned_cols=72  Identities=36%  Similarity=0.510  Sum_probs=64.9

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhccccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      ++....|||+||||+++++.++||+||++|++++|||+++..   +.+.|+.|++||++|+||.+|..||..+..
T Consensus         4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A            4 GSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             CCSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            345678999999999999999999999999999999999763   457999999999999999999999998643

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.3e-20  Score=143.30  Aligned_cols=73  Identities=33%  Similarity=0.541  Sum_probs=66.1

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ++....|||+||||+++++.++||++||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..||..+...
T Consensus         2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            2 SSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             CSCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            346678999999999999999999999999999999999754 5679999999999999999999999987543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-20  Score=146.64  Aligned_cols=74  Identities=32%  Similarity=0.506  Sum_probs=66.6

Q ss_pred             CCCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhccccccccccccccc
Q 022733           34 GERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        34 ~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      ..+.+...|||+||||+++|+.++||+|||+|+++||||+++.  .+.+.|+.|++||++|+||.+|..||..+..
T Consensus        10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            3556778999999999999999999999999999999999964  2567999999999999999999999997643

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.80  E-value=2.5e-20  Score=138.15  Aligned_cols=68  Identities=35%  Similarity=0.527  Sum_probs=62.9

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      .|||+||||+++++.++||+||++|++++|||+++.+ +.+.|+.|++||++|+||.+|..||.++...
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            6899999999999999999999999999999999754 6789999999999999999999999987544

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.80  E-value=1.4e-20  Score=144.68  Aligned_cols=73  Identities=29%  Similarity=0.508  Sum_probs=65.3

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--------chHHHHHHHHHHHHhhcccccccccccccc
Q 022733           35 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--------KGHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        35 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--------~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      ...+...|||+||||+++++.++||+||++|+++||||+++.        .+.+.|+.|++||++|+||.+|..||..+.
T Consensus        10 ~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             CSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            344667899999999999999999999999999999999863        245799999999999999999999999875


Q ss_pred             c
Q 022733          107 Q  107 (293)
Q Consensus       107 ~  107 (293)
                      .
T Consensus        90 ~   90 (94)
T 1wjz_A           90 G   90 (94)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=2.9e-20  Score=142.44  Aligned_cols=73  Identities=38%  Similarity=0.581  Sum_probs=65.7

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ++....|||+||||+++++.++||++|++|+++||||+++..   +.+.|+.|++||++|+||.+|..||..+...
T Consensus         4 ~~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   79 (92)
T 2dmx_A            4 GSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS   79 (92)
T ss_dssp             CCCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred             CCCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            345578999999999999999999999999999999999763   4679999999999999999999999987554

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=3.8e-20  Score=140.73  Aligned_cols=71  Identities=30%  Similarity=0.518  Sum_probs=64.6

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ....|||+||||+++++.++||++||+|++++|||+++.+ +.+.|+.|++||++|+||.+|..||.++...
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            3467999999999999999999999999999999999764 6689999999999999999999999987543

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.79  E-value=3.7e-20  Score=135.85  Aligned_cols=68  Identities=37%  Similarity=0.603  Sum_probs=61.7

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      ....|||+||||+++++.++||++|++|++++|||+++.. .+.|+.|++||++|+||.+|..||.+|.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            3457999999999999999999999999999999998653 6799999999999999999999999763

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.79  E-value=4.7e-20  Score=141.34  Aligned_cols=69  Identities=39%  Similarity=0.536  Sum_probs=63.1

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      ....|||+||||+++++.++||++|++|++++|||+++.. .+.|+.|++||++|+||.+|..||.++..
T Consensus         5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   73 (92)
T 2o37_A            5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-TEKFKEISEAFEILNDPQKREIYDQYGLE   73 (92)
T ss_dssp             CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred             ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence            3567999999999999999999999999999999998644 57999999999999999999999998753

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.79  E-value=4.5e-20  Score=143.37  Aligned_cols=69  Identities=32%  Similarity=0.472  Sum_probs=62.8

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      +.|||+||||+++++.++||+||++|++++|||+++..   +.+.|+.|++||++|+||.+|..||..+...
T Consensus         1 M~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A            1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             CCCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            36999999999999999999999999999999999764   5679999999999999999999999987544

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.8e-19  Score=143.04  Aligned_cols=71  Identities=24%  Similarity=0.355  Sum_probs=64.8

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhccccccccccccccc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      .....|||+||||+++|+.++||+|||+|++++|||+++.  .+.+.|+.|++||++|+||.+|..||..+..
T Consensus        16 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   88 (112)
T 2ctq_A           16 SEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS   88 (112)
T ss_dssp             CCCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence            3557899999999999999999999999999999999974  3678999999999999999999999998754

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=4.2e-19  Score=140.23  Aligned_cols=71  Identities=30%  Similarity=0.473  Sum_probs=64.5

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhccccccccccccccc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      +....|||+||||+++|+.++||++|++|++++|||+++..  +.+.|+.|++||++|+||.+|..||.++..
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   85 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL   85 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccc
Confidence            35568999999999999999999999999999999999753  567999999999999999999999998743

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.75  E-value=2.7e-19  Score=139.90  Aligned_cols=69  Identities=39%  Similarity=0.623  Sum_probs=63.4

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ..|||+||||+++++.++||++||+|++++|||+++.  .+.+.|+.|++||++|+||.+|..||..+...
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence            4699999999999999999999999999999999974  35689999999999999999999999988654

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=1.8e-18  Score=144.75  Aligned_cols=72  Identities=28%  Similarity=0.523  Sum_probs=64.8

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------hHHHHHHHHHHHHhhccccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--------GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      +.+...|||+||||+++++.++||+|||+|++++|||+++..        +.+.|+.|++||++|+||.+|..||..+..
T Consensus         5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~   84 (155)
T 2l6l_A            5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE   84 (155)
T ss_dssp             CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred             ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence            346678999999999999999999999999999999998754        247999999999999999999999987743

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=3.9e-18  Score=130.16  Aligned_cols=62  Identities=26%  Similarity=0.370  Sum_probs=57.2

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccc
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKD  100 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~  100 (293)
                      ...|||+||||+++++.++||+|||+|+++||||+++.. +.+.|+.|++||++|+||.+|..
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            357999999999999999999999999999999999764 67799999999999999999875

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.72  E-value=1.6e-18  Score=136.83  Aligned_cols=71  Identities=28%  Similarity=0.481  Sum_probs=63.9

Q ss_pred             CCccCcccccCCCCCC-CHHHHHHHHHHHHHhhCCCCCCC-----chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQ-----KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPD~~~~-----~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ....|||+||||+++| +.++||+|||+|++++|||+++.     .+.+.|+.|++||++|+||.+|..||..+...
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            3467999999999999 99999999999999999999875     24579999999999999999999999987543

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.69  E-value=2.2e-18  Score=137.10  Aligned_cols=65  Identities=29%  Similarity=0.394  Sum_probs=60.3

Q ss_pred             ccCcccccCCCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcccccccccccccc
Q 022733           40 KKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      ..+||+||||+++|+.  ++||+|||+|++++|||++++  .++|++|++||++|+||.+|..||.++.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4689999999999999  999999999999999999876  4799999999999999999999998653

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.67  E-value=2e-17  Score=125.66  Aligned_cols=66  Identities=21%  Similarity=0.221  Sum_probs=59.2

Q ss_pred             CCCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhcccccccc
Q 022733           35 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKD  100 (293)
Q Consensus        35 ~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~  100 (293)
                      .......++|+||||+++|+.+|||+|||+|+++||||+++..   +.+.|+.|++||++|+|...|..
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~   78 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ   78 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccccc
Confidence            4556778999999999999999999999999999999999864   56899999999999999887743

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.67  E-value=2.4e-17  Score=143.13  Aligned_cols=68  Identities=44%  Similarity=0.673  Sum_probs=62.5

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      .|||+||||+++|+.++||+|||+|++++|||+++.  .+.+.|+.|++||++|+||.+|..||.++...
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~   71 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   71 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence            589999999999999999999999999999999864  36679999999999999999999999987543

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.67  E-value=3.2e-17  Score=119.60  Aligned_cols=64  Identities=23%  Similarity=0.296  Sum_probs=56.6

Q ss_pred             CCCCCCccCcccccCCCC-CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccc
Q 022733           34 GERASKKKNYYELLGVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK   99 (293)
Q Consensus        34 ~~~~~~~~d~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~   99 (293)
                      ....++..++|+||||++ +++.++||++||+|++++|||++++  .+.|++|++||++|+|+..|+
T Consensus         7 ~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~--~~~f~~i~~Aye~L~~~~~rk   71 (71)
T 2guz_A            7 FDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS--PFLATKINEAKDFLEKRGISK   71 (71)
T ss_dssp             CCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC--HHHHHHHHHHHHHHHHHCCCC
T ss_pred             CCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHhhhhhcC
Confidence            345577789999999999 7999999999999999999999753  479999999999999987763

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.66  E-value=4.3e-18  Score=144.48  Aligned_cols=66  Identities=27%  Similarity=0.342  Sum_probs=58.5

Q ss_pred             CccCcccccCCCCCCC--HHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcccccccccccccc
Q 022733           39 KKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      ...|||+||||+++|+  .++||+|||++++++|||+++++  +.|++|++||++|+||.+|..||.++.
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~--e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE--EKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC--TTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH--HHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            3579999999999998  69999999999999999998764  789999999999999999999999874

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.66  E-value=2.3e-17  Score=122.86  Aligned_cols=61  Identities=21%  Similarity=0.306  Sum_probs=55.8

Q ss_pred             CccCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccc
Q 022733           39 KKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY  101 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~Y  101 (293)
                      ...++|+||||+++  ++.++||+|||+|++++|||++++  .+.|++|++||++|+|+.+|..+
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~--~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHhhHHHHHHH
Confidence            34689999999999  999999999999999999999864  58999999999999999988873

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.64  E-value=9.3e-17  Score=140.38  Aligned_cols=81  Identities=26%  Similarity=0.473  Sum_probs=65.2

Q ss_pred             cceeccCCCCCCCCCccCcccccCCCCC--CCHHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHhhccc
Q 022733           25 VIRCCNGRAGERASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRG   95 (293)
Q Consensus        25 ~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~~~i~~Ay~vL~d~   95 (293)
                      .+.|..-..-+......|||+||||+++  ++..+||++||+|+++||||+++..       +.+.|+.||+||++|+||
T Consensus        27 ~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp  106 (207)
T 3bvo_A           27 RFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAP  106 (207)
T ss_dssp             CCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred             ccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCH
Confidence            3444332222334456799999999987  7999999999999999999998753       235789999999999999


Q ss_pred             cccccccccc
Q 022733           96 DLRKDYDASI  105 (293)
Q Consensus        96 ~~R~~YD~~~  105 (293)
                      .+|..||..+
T Consensus       107 ~~R~~Yd~~l  116 (207)
T 3bvo_A          107 LSRGLYLLKL  116 (207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999764

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.63  E-value=5.7e-17  Score=137.77  Aligned_cols=66  Identities=24%  Similarity=0.502  Sum_probs=60.0

Q ss_pred             cCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCch-------HHHHHHHHHHHHhhcccccccccccccc
Q 022733           41 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        41 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~-------~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      .|||+||||++++  +..+||++||+|+++||||+++...       .+.|..||+||++|+||.+|..||..+.
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            3899999999999  9999999999999999999987542       3589999999999999999999999753

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.61  E-value=2.1e-16  Score=134.97  Aligned_cols=61  Identities=21%  Similarity=0.317  Sum_probs=57.1

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhccccccccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY  101 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d~~~R~~Y  101 (293)
                      .|||+||||+++|+.++||+|||++++++|||+++..     +.+.|+.|++||++|+||.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            6999999999999999999999999999999998654     467999999999999999999987

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.60  E-value=1.4e-16  Score=136.47  Aligned_cols=68  Identities=31%  Similarity=0.548  Sum_probs=61.4

Q ss_pred             CCCccCccccc------CCCC-CCCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccccccc
Q 022733           37 ASKKKNYYELL------GVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        37 ~~~~~d~Y~iL------gv~~-~as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      +....|||+||      |+++ +++..+||++||+|++++|||+++. +.+.|+.|++||++|+||.+|..||..+
T Consensus         7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            35567999999      4665 8999999999999999999999976 6678999999999999999999999975

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.59  E-value=3.7e-16  Score=119.28  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=49.6

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhcc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMR   94 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d   94 (293)
                      .++|++|||+++||.+|||+|||+++++||||++++.     +++.|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999998753     46799999999999975

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.57  E-value=4.2e-16  Score=122.32  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=51.1

Q ss_pred             CccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---------hHHHHHHHHHHHHhhccccc
Q 022733           39 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---------GHEHTLLLNEAYKVLMRGDL   97 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---------~~~~~~~i~~Ay~vL~d~~~   97 (293)
                      ...|||+|||++. ||.++||+|||+++++||||+++..         +.+.|+.|++||++|+|+..
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~  105 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP  105 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence            3479999999996 9999999999999999999997531         36799999999999999863

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.47  E-value=4e-15  Score=152.36  Aligned_cols=73  Identities=41%  Similarity=0.635  Sum_probs=40.8

Q ss_pred             CCCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCC--chHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           36 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        36 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~--~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      ......|||+||||+++||.++||+|||+|+++||||+++.  .+.+.|+.|++||++|+||.+|..||.++...
T Consensus        16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~   90 (780)
T 3apo_A           16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKG   90 (780)
T ss_dssp             -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence            34556899999999999999999999999999999999853  35679999999999999999999999988543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=99.25  E-value=6.4e-13  Score=119.12  Aligned_cols=106  Identities=20%  Similarity=0.220  Sum_probs=85.0

Q ss_pred             CcCCCCCcccc-----cceeeeeCCcceEEEEEecCcccceecccccCCCc------------ceeeeeeecccceEEEE
Q 022733          141 CIGCRECVHHA-----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV------------NCIHWVDREELPVLEFL  203 (293)
Q Consensus       141 CigC~~C~~~a-----p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg------------~Cig~~~~~e~k~LeV~  203 (293)
                      -..|..|.+++     +.+|..|.|.|.....++.+++.++++.+|+.|.|            .|.|.+.+.+.+.|+|.
T Consensus        38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~  117 (248)
T 1nlt_A           38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVH  117 (248)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEE
T ss_pred             EEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEEE
Confidence            34555555543     57899999999999889999988889999999987            58888899999999999


Q ss_pred             eCCCCCCCcEEecCC------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          204 IQPQPKKGYGVFGGG------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       204 Ip~G~~~G~~I~g~G------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ||||+++|++|...|      ++.|+|||+..+.....+++++.+||+-
T Consensus       118 Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~  166 (248)
T 1nlt_A          118 VEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVY  166 (248)
T ss_dssp             ECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred             ECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEE
Confidence            999999999997555      2467899999866555556666666664

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.99  E-value=2.2e-10  Score=81.68  Aligned_cols=53  Identities=13%  Similarity=0.083  Sum_probs=46.5

Q ss_pred             ccCcccccCCCCC---CCHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhcc
Q 022733           40 KKNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR   94 (293)
Q Consensus        40 ~~d~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d   94 (293)
                      ....|.||||+++   ++.++|+++||+|+..+|||++++.  .....|++|++.|..
T Consensus         3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~--yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF--YLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHHHHH
Confidence            3467899999999   9999999999999999999998665  556779999999964

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.91  E-value=7.2e-10  Score=103.22  Aligned_cols=65  Identities=37%  Similarity=0.631  Sum_probs=54.5

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhcccccccccccc
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDAS  104 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d~~~R~~YD~~  104 (293)
                      ..++|.+||+..+++.++|+++|+++++++|||+.+.+     +.+.|+.|++||++|+||++|..||.+
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            34899999999999999999999999999999998754     456999999999999999999999973

>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A

Probab=97.80  E-value=7.4e-07  Score=75.90  Aligned_cols=65  Identities=12%  Similarity=-0.026  Sum_probs=47.2

Q ss_pred             cccccCCCcceeeeeeecccceEEEEeCCCCCCCcEEecCC------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          178 EVSVDSCPVNCIHWVDREELPVLEFLIQPQPKKGYGVFGGG------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       178 q~ac~~Cpg~Cig~~~~~e~k~LeV~Ip~G~~~G~~I~g~G------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      ...|..|.|    .+.+.+.+.|+|.||+|+++|++|...|      ++.|||+|+..+......++++.+|++-
T Consensus        27 ~~~c~~c~G----~g~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i~~~~h~~F~R~G~DL~~   97 (181)
T 3agx_A           27 SHKRLNPDG----KSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIY   97 (181)
T ss_dssp             EEEEECTTS----SCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEEEECCCSSCEEETTEEEE
T ss_pred             ecccCCCCC----ceEEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEEEEeccccceeeCCcEEE
Confidence            344666665    4566777899999999999999997554      2467899998866555555666666654

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.02  E-value=0.00045  Score=53.13  Aligned_cols=61  Identities=10%  Similarity=0.083  Sum_probs=43.5

Q ss_pred             cCcCCCCCccc------ccceeeeeCCcceEEEEEecCcccceecccccCCCc----------ceeeeeeecccceEEEE
Q 022733          140 ACIGCRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV----------NCIHWVDREELPVLEFL  203 (293)
Q Consensus       140 ~CigC~~C~~~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg----------~Cig~~~~~e~k~LeV~  203 (293)
                      .-..|..|.+.      .+.+|..|.|.|...+..  |+  .+++.+|+.|.|          .|.+.+.+.+.+.|+|.
T Consensus        27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~--~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~k~l~V~  102 (104)
T 2ctt_A           27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GP--FVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS  102 (104)
T ss_dssp             CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TT--EEEEEECSSSSSSSEECSSCCSSSSSCSEECCCCSSCCS
T ss_pred             eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CC--EEEEEECCcCCCcceECCCcCCCCCCeeEEEEEEEEEEE
Confidence            34455555543      357899999999765543  54  346778998877          58888888888888886


Q ss_pred             e
Q 022733          204 I  204 (293)
Q Consensus       204 I  204 (293)
                      +
T Consensus       103 ~  103 (104)
T 2ctt_A          103 S  103 (104)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}

Probab=96.66  E-value=0.00011  Score=62.18  Aligned_cols=55  Identities=16%  Similarity=0.111  Sum_probs=40.6

Q ss_pred             eeecccceEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          192 VDREELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       192 ~~~~e~k~LeV~Ip~G~~~G~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      +.+.+.+.|+|.||||+++|++|...|       ++.+||+|+..+......++++.+|++-
T Consensus        36 g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~   97 (180)
T 2q2g_A           36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIM   97 (180)
T ss_dssp             EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEE
T ss_pred             ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEE
Confidence            455667899999999999999997544       2356899998866555555666666654

>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A

Probab=96.56  E-value=0.00011  Score=61.72  Aligned_cols=51  Identities=10%  Similarity=0.019  Sum_probs=38.4

Q ss_pred             ccceEEEEeCCCCCCCcEEecCC-------CCCCCceehhhHHHHHHHHHHhhCCCCC
Q 022733          196 ELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAAKAFNKQLQQQAAGGSNP  246 (293)
Q Consensus       196 e~k~LeV~Ip~G~~~G~~I~g~G-------~~~~~~vf~~~~~~~~~~~~~~~~~~~~  246 (293)
                      +.+.|+|.||||+++|++|...|       ++.+||+|+..+......++++.+|++-
T Consensus        34 ~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~   91 (170)
T 1c3g_A           34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIY   91 (170)
T ss_dssp             EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEE
T ss_pred             EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeE
Confidence            66799999999999999996544       2457899999866555555666656654

>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A

Probab=94.50  E-value=0.0064  Score=41.50  Aligned_cols=59  Identities=42%  Similarity=0.894  Sum_probs=36.7

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceeeee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWV  192 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~~  192 (293)
                      +.++.+.|++|+.|....|..+.+.+..|...+.......-.........||.++|...
T Consensus         4 ~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~   62 (64)
T 1dax_A            4 FYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE   62 (64)
T ss_dssp             CEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECC
T ss_pred             EEEccccCCCchHHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeee
Confidence            56788899999999999998777765435544332101111112334567888888653

>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*

Probab=93.74  E-value=0.0067  Score=43.70  Aligned_cols=58  Identities=28%  Similarity=0.548  Sum_probs=38.0

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEEEEecC-------c-ccceecccccCCCcceeeee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYG-------D-SDQNIEVSVDSCPVNCIHWV  192 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g-------~-~~~~iq~ac~~Cpg~Cig~~  192 (293)
                      ++++.++|++|+.|...+|..|.+.+. |...+..+..       . .-.........||.++|...
T Consensus         4 v~vd~~~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~   69 (81)
T 1iqz_A            4 TIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVA   69 (81)
T ss_dssp             EEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEE
T ss_pred             EEEecccCcccChhhHhCchheeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEe
Confidence            567889999999999999988887643 5544322100       0 01123345677999998665

>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1

Probab=93.73  E-value=0.062  Score=35.40  Aligned_cols=57  Identities=28%  Similarity=0.605  Sum_probs=33.4

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceeee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW  191 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~  191 (293)
                      +.++.+.|++|+.|....|..+.+.+..|...+. .....-.....-...||.++|.+
T Consensus         2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~~~~~~~-~~~~~c~~C~~C~~~CP~~Ai~~   58 (59)
T 1dwl_A            2 IVIDHEECIGCESCVELCPEVFAMIDGEEKAMVT-APDSTAECAQDAIDACPVEAISK   58 (59)
T ss_dssp             EEESSCCCSSCCGGGGTSTTTEEEEECSSCEEES-CTTCCCGGGGTGGGGSTTCCEEE
T ss_pred             eEEChhhCcChhHHHHHCCHHheecCCCCcEEEe-cChhhhhHHHHHHHhCCHhhEEc
Confidence            4567889999999999999777662233443321 01111111233346678877753

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=91.08  E-value=0.28  Score=43.17  Aligned_cols=34  Identities=18%  Similarity=0.061  Sum_probs=25.6

Q ss_pred             ceEEEEeCCC--CCCCcEEecCCCC-------CCCceehhhHH
Q 022733          198 PVLEFLIQPQ--PKKGYGVFGGGWE-------RPANVFMAAKA  231 (293)
Q Consensus       198 k~LeV~Ip~G--~~~G~~I~g~G~~-------~~~~vf~~~~~  231 (293)
                      ..++|.||+|  +..|+.+.++|.|       ..||+||..++
T Consensus       189 ~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V  231 (248)
T 1nlt_A          189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTI  231 (248)
T ss_dssp             CEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEE
T ss_pred             CEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEE
Confidence            4689999999  9999998766533       23788887644

>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A

Probab=90.82  E-value=0.039  Score=37.34  Aligned_cols=58  Identities=28%  Similarity=0.555  Sum_probs=35.1

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcc-c--ceecccccCCCcceeeee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDS-D--QNIEVSVDSCPVNCIHWV  192 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~-~--~~iq~ac~~Cpg~Cig~~  192 (293)
                      +.++.+.|++|+.|....|..+.+... |...++....+. .  .....-...||.++|...
T Consensus         4 ~~id~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~   64 (66)
T 1sj1_A            4 VSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIE   64 (66)
T ss_dssp             EEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             EEECcccCcCchHHHHhCCceEEECCC-CceeecccCCCcHHHHHHHHHHHhhCCHhhEEEe
Confidence            567888999999999999987776532 544332211111 1  112233467888887653

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=90.00  E-value=0.16  Score=36.31  Aligned_cols=31  Identities=16%  Similarity=0.252  Sum_probs=22.6

Q ss_pred             cceeeeeCCcceEEEEEecCcccceecccccCCCc
Q 022733          152 SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV  186 (293)
Q Consensus       152 p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg  186 (293)
                      +.+|..|.|.|..... + +++  +++..|+.|.|
T Consensus        28 ~~~C~~C~G~G~~~~~-~-g~~--~~~~~C~~C~G   58 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMR-Q-GFF--AVQQTCPHCQG   58 (79)
T ss_dssp             CEECTTTTTSSEEEEE-E-TTE--EEEEECTTTTT
T ss_pred             CCCCCCCcCeEEEEEE-c-CCC--EEeeECcCCCC
Confidence            4689999999976543 3 433  46778999988

>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A

Probab=89.47  E-value=0.072  Score=35.16  Aligned_cols=55  Identities=29%  Similarity=0.629  Sum_probs=32.0

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIH  190 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig  190 (293)
                      +.++ +.|++|+.|....|..+.+.+. |...++......-.....-...||.++|.
T Consensus         2 v~id-~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~   56 (58)
T 1f2g_A            2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIV   56 (58)
T ss_dssp             CBCT-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCB
T ss_pred             cEEC-CcCccchHHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEE
Confidence            4577 8999999999999987666443 43333221011111122334567887764

>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A

Probab=88.11  E-value=0.1  Score=34.45  Aligned_cols=26  Identities=35%  Similarity=0.834  Sum_probs=20.8

Q ss_pred             cccccccCcCCCCCcccccceeeeeC
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDE  159 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~  159 (293)
                      +.++.+.|++|+.|....|..+.+.+
T Consensus         3 ~~i~~~~C~~C~~C~~~Cp~~~~~~~   28 (60)
T 1rof_A            3 VRVDADACIGCGVCENLCPDVFQLGD   28 (60)
T ss_dssp             SEECTTTCCSCCSSTTTCTTTBCCCS
T ss_pred             EEEchhhCCCChHHHHhCcHHHeECC
Confidence            45778899999999999997665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=86.73  E-value=0.38  Score=47.91  Aligned_cols=48  Identities=21%  Similarity=0.329  Sum_probs=37.5

Q ss_pred             CCccCcccccCCCCCCCH--HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHh
Q 022733           38 SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKV   91 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~v   91 (293)
                      ...+|||.+||++.+...  .+|+++||++++..+++      .+++..|..|+.|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHhccc
Confidence            445569999999777655  77999999999977655      3678888888775

>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}

Probab=85.19  E-value=0.73  Score=35.28  Aligned_cols=32  Identities=16%  Similarity=0.251  Sum_probs=24.9

Q ss_pred             eEEEEeCCCCCCCcEEecCCCC-----CCCceehhhH
Q 022733          199 VLEFLIQPQPKKGYGVFGGGWE-----RPANVFMAAK  230 (293)
Q Consensus       199 ~LeV~Ip~G~~~G~~I~g~G~~-----~~~~vf~~~~  230 (293)
                      .++|.||+|+..|+.+..+|.|     ..||+||...
T Consensus        39 ~~~v~ip~g~~~G~~~rl~G~G~p~~~~~GDL~v~~~   75 (109)
T 3i38_A           39 SILLTVPPGSQAGQRLRIKGKGLVSKTHTGDLFAVIK   75 (109)
T ss_dssp             CEEEEECTTCCTTCEEEETTCSCBCSSCBCCEEEEEE
T ss_pred             CEEEeeCCCcCcCeEEEECCccCCCCCCCcCEEEEEE
Confidence            5899999999999999766643     3468777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	293
d1fxra_	64	d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacte	4e-14
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	6e-13
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-12
d1iqza_	81	d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyt	5e-12
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-11
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-11
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-11
d1fxda_	58	d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [T	8e-11
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	2e-10
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-09
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	6e-09
d1sj1a_	66	d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus	1e-08
d1vjwa_	59	d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [T	3e-06
d3c8ya3	83	d.58.1.5 (A:127-209) Fe-only hydrogenase, second d	0.002

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

 Score = 64.0 bits (155), Expect = 4e-14
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 133 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWV 192
             +VD++ CI C  CV  A   F MD     A VK   G S + +E ++D+CPV CIHW 
Sbjct: 3   KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWE 62

Query: 193 DR 194
           D 
Sbjct: 63  DE 64

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (149), Expect = 6e-13
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)

Query: 36  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYH--------PDIAGQKGHEHTLLLNE 87
             + KK++Y +LG    AN  ++K+ Y+KL   YH        P    ++  +  + +++
Sbjct: 11  EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQ 70

Query: 88  AYKVLMRGDLRKDYDA 103
           A+K+L   + +K YD 
Sbjct: 71  AWKILGNEETKKKYDL 86

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 59.8 bits (144), Expect = 4e-12
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 5/103 (4%)

Query: 38  SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 95
            +     +LLG+   A G    +++AY K  K++HPD       E    +N  YK +  G
Sbjct: 5   EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDK--GGDEEKMKKMNTLYKKMEDG 62

Query: 96  DLRKDYDASIGQMRFHFGTNASAGFSRSSWKGPPRPEALFVDE 138
                     G                  W      E LF  E
Sbjct: 63  VKYAHQP-DFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSE 104

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

 Score = 58.6 bits (141), Expect = 5e-12
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 131 PEALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNI--------EVSVD 182
           P+   VD+  CI C  C   A + +  DE  G A V +        +          + +
Sbjct: 1   PKYTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFE 59

Query: 183 SCPVNCIHWVDR 194
            CP + I   D 
Sbjct: 60  GCPTDSIKVADE 71

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGH--EHTLLLNEAYKVLMRGDL 97
           K++YYE+LGVS  A  +EI++AY++L  KYHPD              + EAY+VL     
Sbjct: 2   KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQK 61

Query: 98  RKDYD 102
           R  YD
Sbjct: 62  RAAYD 66

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 57.0 bits (137), Expect = 2e-11
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 42  NYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVL 92
           +Y+ L G+        Q +   ++ LQ++YHPD              + +  +N+A++ L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 93  MRGDLRKDYDASI 105
               +R +Y  S+
Sbjct: 62  RHPLMRAEYLLSL 74

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 38  SKKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRG 95
           + K+   ELL +  +  G    +++AY++     HPD  G   H     LN  +      
Sbjct: 8   ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTE 65

Query: 96  DLRKDYDA 103
                 + 
Sbjct: 66  VYNLRMNL 73

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} Length = 58

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

 Score = 54.6 bits (131), Expect = 8e-11
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 136 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCI 189
              + C+ C  CV    + F M+E    A V     D D  +E ++DSCP   I
Sbjct: 3   EVNDDCMACEACVEICPDVFEMNEEGDKAVVINPDSDLDC-VEEAIDSCPAEAI 55

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 36  RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHT---LLLNEAYKVL 92
           R S  K    ++  + +    E K+  R+L  K+HPD   +           L      L
Sbjct: 11  RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

Query: 93  MRGDLRKDYDASIGQMRF 110
            +            +  F
Sbjct: 71  EKQAFLDQNADRASRRTF 88

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPD-----IAGQKGHEHTLLLNEAYKVLMR 94
            +  ++ +G++     +++K+ YRK     HPD        Q      + LN+A+     
Sbjct: 32  GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 95  GDLRKDY 101
              +  Y
Sbjct: 92  QGQKPLY 98

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 6e-09
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 40  KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKG-HEHTLLLNEAYKVLMRGDLR 98
            K+YY+ LG++  A+ +EIK AYR+   +YHPD   + G  E    + EAY VL     R
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61

Query: 99  KDYD 102
           + +D
Sbjct: 62  EIFD 65

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 136 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEV--SVDSCPVNCIHWVD 193
           VD++ CIG   C     + F M++            D +       ++++CPV+ I   +
Sbjct: 6   VDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} Length = 59

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.8 bits (97), Expect = 3e-06
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 136 VDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW 191
           VD +ACIGC  C +   + F + +  G A+V     D     + + DSCP   I  
Sbjct: 5   VDADACIGCGVCENLCPDVFQLGD-DGKAKVLQPETDLPCAKD-AADSCPTGAISV 58

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 10/68 (14%)

Query: 132 EALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVS----------V 181
           ++L VD   C+ C  CV+               +       ++                +
Sbjct: 12  KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCI 71

Query: 182 DSCPVNCI 189
            +CPV  +
Sbjct: 72  IACPVAAL 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	293
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.85
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.79
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.79
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.71
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.65
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.6
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1fxra_	64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	98.47
d1fxda_	58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	97.48
d1iqza_	81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	97.44
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.09
d1sj1a_	66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	96.89
d1vjwa_	59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	96.87
d1c3ga1	80	Heat shock protein 40 Sis1 {Baker's yeast (Sacchar	96.41
d1nlta1	74	Mitochondrial protein import protein mas5 (Hsp40,	96.06
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	92.09
d3c8ya3	83	Fe-only hydrogenase, second domain {Clostridium pa	83.84

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.3e-22  Score=146.02  Aligned_cols=68  Identities=40%  Similarity=0.632  Sum_probs=62.3

Q ss_pred             ccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--hHHHHHHHHHHHHhhccccccccccccccc
Q 022733           40 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        40 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      .+|||+||||+++||.+|||+||+++++++|||+++..  ..+.|..|++||+||+||.+|..||.+|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            57999999999999999999999999999999998653  457899999999999999999999998643

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.3e-21  Score=141.28  Aligned_cols=68  Identities=35%  Similarity=0.527  Sum_probs=63.0

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHhhcccccccccccccccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM  108 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~~  108 (293)
                      +|||+||||+++||.++|++||+++++++|||+++.+ +.+.|..|++||+||+||.+|..||+++...
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~   71 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            5999999999999999999999999999999998764 5678999999999999999999999987654

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.2e-20  Score=141.90  Aligned_cols=69  Identities=30%  Similarity=0.551  Sum_probs=61.7

Q ss_pred             CCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------hHHHHHHHHHHHHhhcccccccccccccc
Q 022733           38 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--------GHEHTLLLNEAYKVLMRGDLRKDYDASIG  106 (293)
Q Consensus        38 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~--------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~  106 (293)
                      ....|||+||||+++|+.++||+||++|+++||||+++..        +++.|+.|++||+||+||.+|..||....
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            3457999999999999999999999999999999998643        34679999999999999999999998753

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.79  E-value=1.3e-20  Score=148.21  Aligned_cols=66  Identities=29%  Similarity=0.360  Sum_probs=60.3

Q ss_pred             ccCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccccccccc
Q 022733           40 KKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ  107 (293)
Q Consensus        40 ~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~~~  107 (293)
                      ..+||+||||+++|  +.++||+|||+|++++|||+++++  +.|+.|++||+||+||.+|..||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~--e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE--EKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT--TTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            35899999999999  788999999999999999998754  6899999999999999999999987643

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.71  E-value=1.2e-18  Score=127.69  Aligned_cols=65  Identities=20%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             CccCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHhhccccccccccccc
Q 022733           39 KKKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        39 ~~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~~~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      ...+||+||||++++  +.++||+||+++++++|||++++  .+.|++||+||++|+|+.+|..||..+
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~--~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC--HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            346899999999998  99999999999999999999865  478999999999999999999999864

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.8e-17  Score=120.74  Aligned_cols=65  Identities=25%  Similarity=0.517  Sum_probs=56.4

Q ss_pred             cCcccccCCCCCC--CHHHHHHHHHHHHHhhCCCCCCCc-------hHHHHHHHHHHHHhhccccccccccccc
Q 022733           41 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        41 ~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPD~~~~~-------~~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      .|||+||||++++  +.++||++|+++++++|||+....       +.+.|..|++||+||+||.+|..|+..+
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l   74 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL   74 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            3899999999964  589999999999999999997542       2357889999999999999999998754

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.8e-16  Score=118.43  Aligned_cols=66  Identities=21%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             CCCccCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc---hHHHHHHHHHHHHhhccccccccccccc
Q 022733           37 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASI  105 (293)
Q Consensus        37 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~---~~~~~~~i~~Ay~vL~d~~~R~~YD~~~  105 (293)
                      .....++|+||||+.+||.+|||+|||+|+++||||+++..   +.+.|+.|++||++|++   +..||...
T Consensus        12 ~~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~   80 (88)
T d1iura_          12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNA   80 (88)
T ss_dssp             SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSS
T ss_pred             hhHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccc
Confidence            34457999999999999999999999999999999999764   46789999999999985   45555543

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=2.1e-16  Score=120.50  Aligned_cols=61  Identities=21%  Similarity=0.317  Sum_probs=56.0

Q ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHhhCCCCCCCc-----hHHHHHHHHHHHHhhccccccccc
Q 022733           41 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY  101 (293)
Q Consensus        41 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPD~~~~~-----~~~~~~~i~~Ay~vL~d~~~R~~Y  101 (293)
                      .++|++|||++.+|.++||+||+++++.+|||+++..     +.+.|+.|++||++|+||.+|..|
T Consensus        33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            4679999999999999999999999999999987654     356899999999999999999988

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]

Probab=98.47  E-value=8.4e-09  Score=71.35  Aligned_cols=62  Identities=42%  Similarity=0.876  Sum_probs=54.6

Q ss_pred             CccccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceeeeee
Q 022733          132 EALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHWVD  193 (293)
Q Consensus       132 ~difvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~~~  193 (293)
                      ..+|||.+.|++|+.|...+|..|.+.+..|..++..+........+.+.+.||++||++..
T Consensus         2 ~~~~VD~~~CigCg~C~~~cP~~f~~~~~~~~~~~~~~~~~~c~~c~~c~~~CP~~aI~~~e   63 (64)
T d1fxra_           2 RKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED   63 (64)
T ss_dssp             CEEEECTTTCCCCCHHHHHCTTTEEEETTTTEEEESCTTSSCHHHHHHHHHHCTTCCEEEEC
T ss_pred             CeEEEchhhCccCCCccccCcCeEEEecCCCeeeeeccCCCcchhHHHHHhcCCcccEEEEe
Confidence            46899999999999999999999999998899888777766666788999999999998764

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin I
species: Desulfovibrio gigas [TaxId: 879]

Probab=97.48  E-value=6.6e-06  Score=55.18  Aligned_cols=56  Identities=29%  Similarity=0.608  Sum_probs=42.7

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceeee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW  191 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~  191 (293)
                      +|++ +.|++|+.|...+|..|.+.+. |...++.........+..+.+.||+++|..
T Consensus         2 v~v~-e~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~c~~c~~~CP~~AIs~   57 (58)
T d1fxda_           2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIVR   57 (58)
T ss_dssp             EEEC-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCCHHHHHHHHHCTTCCEEE
T ss_pred             eeEC-ccCcChhhHHHHcChhheEcCC-CCEEEEecCCCCcHHHHHHhhcCChhcEEC
Confidence            4566 6899999999999999998877 444444444444455778899999999864

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin
species: Bacillus thermoproteolyticus [TaxId: 1427]

Probab=97.44  E-value=6.7e-06  Score=58.94  Aligned_cols=61  Identities=26%  Similarity=0.516  Sum_probs=46.3

Q ss_pred             ccccccccCcCCCCCcccccceeeeeCCcceEEEEEecCc--------ccceecccccCCCcceeeeeee
Q 022733          133 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD--------SDQNIEVSVDSCPVNCIHWVDR  194 (293)
Q Consensus       133 difvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~--------~~~~iq~ac~~Cpg~Cig~~~~  194 (293)
                      -++||.++|++|+.|...+|..|.+.+. |.+.+......        ....++.+...||++||.....
T Consensus         3 ~v~VD~~~CigCg~C~~~cP~~f~~~~d-g~~~~~~~~~~~~~~v~~~~~~~~~~aa~~CP~~AI~v~d~   71 (81)
T d1iqza_           3 YTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE   71 (81)
T ss_dssp             EEEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred             EEEEeHHHCcCcChHhHhCchheeEcCC-CeEEEeecCCcCcccCCHHHHHHHHHHHHhCCcccEEEEeC
Confidence            4678999999999999999999998765 77766543322        1234567889999999966543

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00011  Score=51.44  Aligned_cols=44  Identities=23%  Similarity=0.319  Sum_probs=36.9

Q ss_pred             CCCCCcccc-----cceeeeeCCcceEEEEEecCcccceecccccCCCc
Q 022733          143 GCRECVHHA-----SNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV  186 (293)
Q Consensus       143 gC~~C~~~a-----p~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg  186 (293)
                      .|..|.+++     +.+|..|.|.|....+++.+++.++++..|+.|.|
T Consensus         4 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G   52 (74)
T d1nlta3           4 LCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHG   52 (74)
T ss_dssp             ECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSS
T ss_pred             CCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCcc
Confidence            455565543     56899999999999999999988889999999988

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Fe3S4-ferredoxin PF1909
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.89  E-value=5.6e-05  Score=51.50  Aligned_cols=59  Identities=27%  Similarity=0.497  Sum_probs=42.7

Q ss_pred             ccccccccCcCCCCCcccccceeeeeCCcceEEEEEecCc---ccceecccccCCCcceeeee
Q 022733          133 ALFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGD---SDQNIEVSVDSCPVNCIHWV  192 (293)
Q Consensus       133 difvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~---~~~~iq~ac~~Cpg~Cig~~  192 (293)
                      .+.+|.++|++|+.|...+|..|.+.+. |......+...   ...........||++||...
T Consensus         3 ki~vD~~~Ci~Cg~C~~~CP~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~c~~~CP~~AI~i~   64 (66)
T d1sj1a_           3 KVSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIE   64 (66)
T ss_dssp             EEEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             EEEEeHHHCCCcChhhhhCCceEEEccc-CceEeeccccCChHHHhhhCHhhccCCcccEEEE
Confidence            3668899999999999999999998766 55544433322   12234566788999999754

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Single 4Fe-4S cluster ferredoxin
domain: Ferredoxin A
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=6.5e-05  Score=50.13  Aligned_cols=56  Identities=32%  Similarity=0.566  Sum_probs=43.3

Q ss_pred             cccccccCcCCCCCcccccceeeeeCCcceEEEEEecCcccceecccccCCCcceeee
Q 022733          134 LFVDENACIGCRECVHHASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPVNCIHW  191 (293)
Q Consensus       134 ifvd~~~CigC~~C~~~ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg~Cig~  191 (293)
                      +.+|.++|++|+.|...+|..|.+.+. |...+..+... ..........||++||.+
T Consensus         3 v~iD~~~C~~Cg~C~~~cP~~~~~~~~-g~~~~~~~~~~-c~~c~~c~~~CP~~AI~i   58 (59)
T d1vjwa_           3 VRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETD-LPCAKDAADSCPTGAISV   58 (59)
T ss_dssp             CEECTTTCCCCCHHHHHCTTTEEECTT-SSEEESCSBCC-CTHHHHHHHHCTTCCEEC
T ss_pred             EEEeHHHCCCCCCChHhCchheEEccc-eeeEEecChHH-CcCcCcccCccCcccEEe
Confidence            567889999999999999999988765 77776554432 334566788899999864

>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.0011  Score=46.61  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=27.0

Q ss_pred             ccceEEEEeCCCCCCCcEEecCC-------CCCCCceehhh
Q 022733          196 ELPVLEFLIQPQPKKGYGVFGGG-------WERPANVFMAA  229 (293)
Q Consensus       196 e~k~LeV~Ip~G~~~G~~I~g~G-------~~~~~~vf~~~  229 (293)
                      +.+.|+|.||||+++|++|...|       ++.+||+++..
T Consensus        34 ~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i   74 (80)
T d1c3ga1          34 EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVI   74 (80)
T ss_dssp             EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEE
T ss_pred             ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEE
Confidence            45689999999999999996444       35678988765

>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0023  Score=44.30  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=27.6

Q ss_pred             ccceEEEEeCCCCCCCcEEecCC------CCCCCceehhhH
Q 022733          196 ELPVLEFLIQPQPKKGYGVFGGG------WERPANVFMAAK  230 (293)
Q Consensus       196 e~k~LeV~Ip~G~~~G~~I~g~G------~~~~~~vf~~~~  230 (293)
                      ..+.++|.||+|+.+|++|..+|      ++.+||+++..+
T Consensus        29 ~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~~~~GDl~v~i~   69 (74)
T d1nlta1          29 NRKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVS   69 (74)
T ss_dssp             EEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEE
T ss_pred             cCccEEEEecccccCCeEEEecCCcCCCCCCCCCCEEEEEE
Confidence            44689999999999999997555      345789887653

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.029  Score=38.93  Aligned_cols=43  Identities=14%  Similarity=0.238  Sum_probs=28.2

Q ss_pred             cCcCCCCCccc------ccceeeeeCCcceEEEEEecCcccceecccccCCCc
Q 022733          140 ACIGCRECVHH------ASNTFVMDEATGCARVKVQYGDSDQNIEVSVDSCPV  186 (293)
Q Consensus       140 ~CigC~~C~~~------ap~tf~~c~g~G~~~v~~q~g~~~~~iq~ac~~Cpg  186 (293)
                      +-..|..|.+.      .+.+|..|+|.|..+  .+.++  .+++++|+.|.|
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~--~~~g~--~~~~~~C~~C~G   58 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQ--MRQGF--FAVQQTCPHCQG   58 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEE--EEETT--EEEEEECTTTTT
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeEEE--Eeccc--ceeeEECcccCc
Confidence            34445555543      456899999999653  33343  356678999988

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: 4Fe-4S ferredoxins
family: Ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, second domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.84  E-value=0.15  Score=35.03  Aligned_cols=22  Identities=32%  Similarity=0.765  Sum_probs=18.8

Q ss_pred             CccccccccCcCCCCCcccccc
Q 022733          132 EALFVDENACIGCRECVHHASN  153 (293)
Q Consensus       132 ~difvd~~~CigC~~C~~~ap~  153 (293)
                      ..+.+|.++|++|+.|....|.
T Consensus        12 ~~i~iD~~kCI~C~~Cv~aCp~   33 (83)
T d3c8ya3          12 KSLTVDRTKCLLCGRCVNACGK   33 (83)
T ss_dssp             SSEEEEGGGCCCCCHHHHHHHH
T ss_pred             CCEEEchhHCCCCchHHHhhcc
Confidence            4578899999999999988774